Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22092.t1 | KEH33766.1 | 77.8 | 54 | 12 | 0 | 60 | 113 | 4 | 57 | 6.60E-15 | 90.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22092.t1 | Q9LND4 | 29.4 | 153 | 66 | 3 | 3 | 116 | 380 | 529 | 3.0e-08 | 60.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22092.t1 | A0A072UWF9 | 77.8 | 54 | 12 | 0 | 60 | 113 | 4 | 57 | 4.7e-15 | 90.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056552 | MS.gene22092 | 0.80206 | 6.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22092.t1 | MTR_3g452410 | 77.778 | 54 | 12 | 0 | 60 | 113 | 4 | 57 | 8.88e-25 | 92.8 |
| MS.gene22092.t1 | MTR_3g452410 | 77.778 | 54 | 12 | 0 | 60 | 113 | 4 | 57 | 2.22e-24 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCTAATGGTGAGGGATTA+AGG | 0.257367 | 3.4:-43722852 | MS.gene22092:CDS |
| TTCAACGGTCTCAAATCTTT+TGG | 0.264016 | 3.4:+43722578 | None:intergenic |
| TACTCTATTGTTTGTTCAAA+TGG | 0.318581 | 3.4:-43723123 | MS.gene22092:CDS |
| TGCACACGTTTCCTATGGTT+GGG | 0.323318 | 3.4:-43721548 | MS.gene22092:CDS |
| AGATTTGAGACCGTTGAAAA+AGG | 0.326177 | 3.4:-43722573 | MS.gene22092:intron |
| CAGATCATGTGCTATGGCCT+TGG | 0.337263 | 3.4:-43721616 | MS.gene22092:CDS |
| GTAACAAACGTGAATGAATC+AGG | 0.345317 | 3.4:+43723143 | None:intergenic |
| GTGCTATGGCCTTGGGAGTC+AGG | 0.371801 | 3.4:-43721608 | MS.gene22092:CDS |
| AGATCATGTGCTATGGCCTT+GGG | 0.409945 | 3.4:-43721615 | MS.gene22092:CDS |
| TCAGGTTGCTTCTTGCTTGA+AGG | 0.415111 | 3.4:-43721590 | MS.gene22092:CDS |
| GTGCACACGTTTCCTATGGT+TGG | 0.431910 | 3.4:-43721549 | MS.gene22092:CDS |
| CTCCTTAATCCCTCACCATT+AGG | 0.442519 | 3.4:+43722850 | None:intergenic |
| TGCACACAACGGTATGTTTG+AGG | 0.443354 | 3.4:-43723210 | MS.gene22092:CDS |
| TCCTATGGTTGGGGTAATGA+TGG | 0.447462 | 3.4:-43721538 | MS.gene22092:CDS |
| TGAAACCAAATAAAATTACT+TGG | 0.461663 | 3.4:-43722942 | MS.gene22092:CDS |
| AATTGTGCACACGTTTCCTA+TGG | 0.481870 | 3.4:-43721553 | MS.gene22092:CDS |
| GCAAACACTAAATTGCCTAA+TGG | 0.498664 | 3.4:-43722865 | MS.gene22092:CDS |
| GGCCTCCTTCCTTTCATCCG+TGG | 0.514138 | 3.4:+43722599 | None:intergenic |
| GAAACCAAATAAAATTACTT+GGG | 0.518117 | 3.4:-43722941 | MS.gene22092:CDS |
| CACTAAATTGCCTAATGGTG+AGG | 0.524531 | 3.4:-43722860 | MS.gene22092:CDS |
| GTTGCTTTCGTGTGTTGACA+TGG | 0.526458 | 3.4:-43722914 | MS.gene22092:CDS |
| GGCATGAACTGACCATCACT+CGG | 0.526907 | 3.4:+43722620 | None:intergenic |
| GCACACGTTTCCTATGGTTG+GGG | 0.527316 | 3.4:-43721547 | MS.gene22092:CDS |
| AATGGTGGATGCTTCTTCGA+AGG | 0.527573 | 3.4:-43723105 | MS.gene22092:intron |
| CAGTTCATGCCACGGATGAA+AGG | 0.533808 | 3.4:-43722608 | MS.gene22092:CDS |
| GCCCTTCAGATCATGTGCTA+TGG | 0.544681 | 3.4:-43721622 | MS.gene22092:intron |
| TCTATTGTTTGTTCAAATGG+TGG | 0.550094 | 3.4:-43723120 | MS.gene22092:CDS |
| GCAATCCTTTCCCCGAGTGA+TGG | 0.556379 | 3.4:-43722632 | MS.gene22092:CDS |
| ACTAAATTGCCTAATGGTGA+GGG | 0.565960 | 3.4:-43722859 | MS.gene22092:CDS |
| TTGCTTGAAGGAAATCTGCA+TGG | 0.578808 | 3.4:-43721578 | MS.gene22092:CDS |
| GATTGCGCAACATATATCGC+AGG | 0.585465 | 3.4:-43722828 | MS.gene22092:intron |
| TCATGCCACGGATGAAAGGA+AGG | 0.587608 | 3.4:-43722604 | MS.gene22092:CDS |
| ACTGACCATCACTCGGGGAA+AGG | 0.587693 | 3.4:+43722627 | None:intergenic |
| TAACAAACGTGAATGAATCA+GGG | 0.593003 | 3.4:+43723144 | None:intergenic |
| GCATGAACTGACCATCACTC+GGG | 0.599634 | 3.4:+43722621 | None:intergenic |
| AAGAAGCAACCTGACTCCCA+AGG | 0.609216 | 3.4:+43721599 | None:intergenic |
| AAACCAAATAAAATTACTTG+GGG | 0.636802 | 3.4:-43722940 | MS.gene22092:CDS |
| ACCATCATTACCCCAACCAT+AGG | 0.648112 | 3.4:+43721537 | None:intergenic |
| GTGATGGTCAGTTCATGCCA+CGG | 0.650338 | 3.4:-43722616 | MS.gene22092:CDS |
| AACAAACGTGAATGAATCAG+GGG | 0.687019 | 3.4:+43723145 | None:intergenic |
| CATGAACTGACCATCACTCG+GGG | 0.698036 | 3.4:+43722622 | None:intergenic |
| TGCCACGGATGAAAGGAAGG+AGG | 0.706826 | 3.4:-43722601 | MS.gene22092:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATGTGCATATTATTATT+AGG | + | chr3.4:43722086-43722105 | None:intergenic | 15.0% |
| !! | AAACCAAATAAAATTACTTG+GGG | - | chr3.4:43721827-43721846 | MS.gene22092:intron | 20.0% |
| !! | GAAACCAAATAAAATTACTT+GGG | - | chr3.4:43721826-43721845 | MS.gene22092:intron | 20.0% |
| !! | TGAAACCAAATAAAATTACT+TGG | - | chr3.4:43721825-43721844 | MS.gene22092:intron | 20.0% |
| !!! | AAATTTTATTCTCAACAGAT+TGG | - | chr3.4:43722104-43722123 | MS.gene22092:intron | 20.0% |
| !!! | AATTTTATTCTCAACAGATT+GGG | - | chr3.4:43722105-43722124 | MS.gene22092:intron | 20.0% |
| !!! | ATTTTTTCAATTTAAACCCT+AGG | + | chr3.4:43723116-43723135 | None:intergenic | 20.0% |
| !!! | TTTTTTCAATTTAAACCCTA+GGG | + | chr3.4:43723115-43723134 | None:intergenic | 20.0% |
| ! | AAATGTGATAAATAAACCCT+AGG | + | chr3.4:43723052-43723071 | None:intergenic | 25.0% |
| ! | AACTTCAGTGTTAGATTATA+TGG | - | chr3.4:43722434-43722453 | MS.gene22092:intron | 25.0% |
| ! | AAGTCAAATGGAAATCTAAA+TGG | + | chr3.4:43722892-43722911 | None:intergenic | 25.0% |
| ! | AATGTGATAAATAAACCCTA+GGG | + | chr3.4:43723051-43723070 | None:intergenic | 25.0% |
| ! | ATACTGGAACTAAAACTAAT+TGG | - | chr3.4:43722809-43722828 | MS.gene22092:intron | 25.0% |
| ! | TACTCTATTGTTTGTTCAAA+TGG | - | chr3.4:43721644-43721663 | MS.gene22092:intron | 25.0% |
| ! | TACTGGAACTAAAACTAATT+GGG | - | chr3.4:43722810-43722829 | MS.gene22092:intron | 25.0% |
| !! | TGCACAAAATCTTTTTACTA+CGG | + | chr3.4:43722632-43722651 | None:intergenic | 25.0% |
| !!! | ATTAGTTTTAGTTCCAGTAT+AGG | + | chr3.4:43722809-43722828 | None:intergenic | 25.0% |
| !!! | ATTTGCTACATTTTCAAATC+TGG | + | chr3.4:43722976-43722995 | None:intergenic | 25.0% |
| !!! | CTGAACTATTTTCTAAAACT+CGG | + | chr3.4:43722528-43722547 | None:intergenic | 25.0% |
| !!! | TTAGTTTTAGTTCCAGTATA+GGG | + | chr3.4:43722808-43722827 | None:intergenic | 25.0% |
| AATGAGTATGATTGTACTTG+AGG | - | chr3.4:43722668-43722687 | MS.gene22092:intron | 30.0% | |
| ACCAATATGGTGACTTTATT+TGG | - | chr3.4:43721746-43721765 | MS.gene22092:intron | 30.0% | |
| CACTTATGTATCAAGTCAAA+TGG | + | chr3.4:43722904-43722923 | None:intergenic | 30.0% | |
| CTATTTAGCTATAAACCCTA+GGG | - | chr3.4:43723033-43723052 | MS.gene22092:intron | 30.0% | |
| TAACAAACGTGAATGAATCA+GGG | + | chr3.4:43721626-43721645 | None:intergenic | 30.0% | |
| TAGTTAACTATACCAACAGA+TGG | + | chr3.4:43722328-43722347 | None:intergenic | 30.0% | |
| TATCTATCATGAAAAAGCCA+TGG | - | chr3.4:43721964-43721983 | MS.gene22092:intron | 30.0% | |
| TCTATTGTTTGTTCAAATGG+TGG | - | chr3.4:43721647-43721666 | MS.gene22092:intron | 30.0% | |
| TTACCTTCACCAAAAAAACT+GGG | + | chr3.4:43723012-43723031 | None:intergenic | 30.0% | |
| TTTCACACTCAAACTATTTG+AGG | + | chr3.4:43722370-43722389 | None:intergenic | 30.0% | |
| ! | AATATGGTGACTTTATTTGG+GGG | - | chr3.4:43721749-43721768 | MS.gene22092:intron | 30.0% |
| ! | CAATATGGTGACTTTATTTG+GGG | - | chr3.4:43721748-43721767 | MS.gene22092:intron | 30.0% |
| ! | CCAATATGGTGACTTTATTT+GGG | - | chr3.4:43721747-43721766 | MS.gene22092:intron | 30.0% |
| !! | CGCTTGATTTTGATAAATTG+TGG | - | chr3.4:43722056-43722075 | MS.gene22092:intron | 30.0% |
| !!! | AAGGTTTTGAGCTATTCAAT+CGG | - | chr3.4:43721681-43721700 | MS.gene22092:intron | 30.0% |
| !!! | AGACAATGTTTTTAGAGACT+CGG | + | chr3.4:43722733-43722752 | None:intergenic | 30.0% |
| !!! | TATTGTTGTTTTCCCTATAC+TGG | - | chr3.4:43722793-43722812 | MS.gene22092:intron | 30.0% |
| !!! | TCACATTTACCCAGTTTTTT+TGG | - | chr3.4:43723000-43723019 | MS.gene22092:intron | 30.0% |
| AACAAACGTGAATGAATCAG+GGG | + | chr3.4:43721625-43721644 | None:intergenic | 35.0% | |
| ACTAAATTGCCTAATGGTGA+GGG | - | chr3.4:43721908-43721927 | MS.gene22092:intron | 35.0% | |
| AGACGCCAAAATCGAATATA+TGG | + | chr3.4:43722464-43722483 | None:intergenic | 35.0% | |
| AGCTACCTACACAGTAATTA+GGG | - | chr3.4:43722284-43722303 | MS.gene22092:intron | 35.0% | |
| CAGAATCTTCGAAATTTCCA+TGG | + | chr3.4:43721984-43722003 | None:intergenic | 35.0% | |
| CAGTAACATATGGCCAATTA+TGG | + | chr3.4:43722563-43722582 | None:intergenic | 35.0% | |
| CATGGAAATTTCGAAGATTC+TGG | - | chr3.4:43721982-43722001 | MS.gene22092:intron | 35.0% | |
| CCAATACAAAATTCACGAAC+AGG | - | chr3.4:43722848-43722867 | MS.gene22092:CDS | 35.0% | |
| CCCAAATAAAGTCACCATAT+TGG | + | chr3.4:43721750-43721769 | None:intergenic | 35.0% | |
| CTTACCTTCACCAAAAAAAC+TGG | + | chr3.4:43723013-43723032 | None:intergenic | 35.0% | |
| GACGCCAAAATCGAATATAT+GGG | + | chr3.4:43722463-43722482 | None:intergenic | 35.0% | |
| GCAAACACTAAATTGCCTAA+TGG | - | chr3.4:43721902-43721921 | MS.gene22092:intron | 35.0% | |
| GCTATTTAGCTATAAACCCT+AGG | - | chr3.4:43723032-43723051 | MS.gene22092:intron | 35.0% | |
| GTAACAAACGTGAATGAATC+AGG | + | chr3.4:43721627-43721646 | None:intergenic | 35.0% | |
| TAGCTCAGATGGTGAATTAA+GGG | + | chr3.4:43722269-43722288 | None:intergenic | 35.0% | |
| TGTTAGACATCACACCAATA+TGG | - | chr3.4:43721733-43721752 | MS.gene22092:intron | 35.0% | |
| TTGGTGTGATGTCTAACATT+AGG | + | chr3.4:43721731-43721750 | None:intergenic | 35.0% | |
| TTTACAATCTGACCATCTGT+TGG | - | chr3.4:43722313-43722332 | MS.gene22092:intron | 35.0% | |
| TTTCATCCTAAAAACTCCTC+TGG | - | chr3.4:43722240-43722259 | MS.gene22092:intron | 35.0% | |
| ! | AGATTTGAGACCGTTGAAAA+AGG | - | chr3.4:43722194-43722213 | MS.gene22092:intron | 35.0% |
| ! | CCTGTTCGTGAATTTTGTAT+TGG | + | chr3.4:43722851-43722870 | None:intergenic | 35.0% |
| ! | GACTCCCATATATTCGATTT+TGG | - | chr3.4:43722456-43722475 | MS.gene22092:intron | 35.0% |
| ! | GAGTCTCTAAAAACATTGTC+TGG | - | chr3.4:43722732-43722751 | MS.gene22092:intron | 35.0% |
| ! | GCTCCCCAAGTAATTTTATT+TGG | + | chr3.4:43721833-43721852 | None:intergenic | 35.0% |
| ! | TTCAACGGTCTCAAATCTTT+TGG | + | chr3.4:43722192-43722211 | None:intergenic | 35.0% |
| ! | TTTGGTGTGCTAAATCACTT+GGG | - | chr3.4:43722602-43722621 | MS.gene22092:CDS | 35.0% |
| !! | AATCGGATGCAAACTGATTT+TGG | - | chr3.4:43721698-43721717 | MS.gene22092:intron | 35.0% |
| !! | TTTTGGTGTGCTAAATCACT+TGG | - | chr3.4:43722601-43722620 | MS.gene22092:CDS | 35.0% |
| !!! | TAATGCTCCACCTTTTTCAA+CGG | + | chr3.4:43722207-43722226 | None:intergenic | 35.0% |
| !!! | TTACCCAGTTTTTTTGGTGA+AGG | - | chr3.4:43723006-43723025 | MS.gene22092:intron | 35.0% |
| AAAATAGTTCAGTGTGCTGC+TGG | - | chr3.4:43722536-43722555 | MS.gene22092:intron | 40.0% | |
| AATTGTGCACACGTTTCCTA+TGG | - | chr3.4:43723214-43723233 | MS.gene22092:CDS | 40.0% | |
| CAAAACATTCATCCATGCAG+AGG | + | chr3.4:43722586-43722605 | None:intergenic | 40.0% | |
| CACTAAATTGCCTAATGGTG+AGG | - | chr3.4:43721907-43721926 | MS.gene22092:intron | 40.0% | |
| CTAACCCCTAATTACTGTGT+AGG | + | chr3.4:43722292-43722311 | None:intergenic | 40.0% | |
| GAGCTACCTACACAGTAATT+AGG | - | chr3.4:43722283-43722302 | MS.gene22092:intron | 40.0% | |
| GCTACCTACACAGTAATTAG+GGG | - | chr3.4:43722285-43722304 | MS.gene22092:intron | 40.0% | |
| GTAGCTCAGATGGTGAATTA+AGG | + | chr3.4:43722270-43722289 | None:intergenic | 40.0% | |
| TTGCTTGAAGGAAATCTGCA+TGG | - | chr3.4:43723189-43723208 | MS.gene22092:CDS | 40.0% | |
| TTGGTGTGCTAAATCACTTG+GGG | - | chr3.4:43722603-43722622 | MS.gene22092:CDS | 40.0% | |
| TTGTGCAAGTCTTGCATAGA+AGG | - | chr3.4:43722645-43722664 | MS.gene22092:CDS | 40.0% | |
| ! | CTCTGCATGGATGAATGTTT+TGG | - | chr3.4:43722584-43722603 | MS.gene22092:CDS | 40.0% |
| ! | TTTGAGACCGTTGAAAAAGG+TGG | - | chr3.4:43722197-43722216 | MS.gene22092:intron | 40.0% |
| !! | ATTCGATTTTGGCGTCTAGT+GGG | - | chr3.4:43722467-43722486 | MS.gene22092:intron | 40.0% |
| !! | TATTCGATTTTGGCGTCTAG+TGG | - | chr3.4:43722466-43722485 | MS.gene22092:intron | 40.0% |
| ACCATCATTACCCCAACCAT+AGG | + | chr3.4:43723233-43723252 | None:intergenic | 45.0% | |
| AGATCATGTGCTATGGCCTT+GGG | - | chr3.4:43723152-43723171 | MS.gene22092:CDS | 45.0% | |
| CACATCAGAGATGACACAAG+AGG | + | chr3.4:43722412-43722431 | None:intergenic | 45.0% | |
| CATATGTTACTGCCTCTGCA+TGG | - | chr3.4:43722571-43722590 | MS.gene22092:intron | 45.0% | |
| CATGCAGAGGCAGTAACATA+TGG | + | chr3.4:43722573-43722592 | None:intergenic | 45.0% | |
| CTCCTTAATCCCTCACCATT+AGG | + | chr3.4:43721920-43721939 | None:intergenic | 45.0% | |
| GATTGCGCAACATATATCGC+AGG | - | chr3.4:43721939-43721958 | MS.gene22092:intron | 45.0% | |
| GCCATAGCACATGATCTGAA+GGG | + | chr3.4:43723149-43723168 | None:intergenic | 45.0% | |
| TACTGTGTAGGTAGCTCAGA+TGG | + | chr3.4:43722280-43722299 | None:intergenic | 45.0% | |
| TCCTATGGTTGGGGTAATGA+TGG | - | chr3.4:43723229-43723248 | MS.gene22092:CDS | 45.0% | |
| TGCACACAACGGTATGTTTG+AGG | - | chr3.4:43721557-43721576 | MS.gene22092:CDS | 45.0% | |
| TGCACACGTTTCCTATGGTT+GGG | - | chr3.4:43723219-43723238 | MS.gene22092:CDS | 45.0% | |
| TGCCTAATGGTGAGGGATTA+AGG | - | chr3.4:43721915-43721934 | MS.gene22092:intron | 45.0% | |
| ! | GTTGCTTTCGTGTGTTGACA+TGG | - | chr3.4:43721853-43721872 | MS.gene22092:intron | 45.0% |
| ! | TCAGGTTGCTTCTTGCTTGA+AGG | - | chr3.4:43723177-43723196 | MS.gene22092:CDS | 45.0% |
| !! | AATGGTGGATGCTTCTTCGA+AGG | - | chr3.4:43721662-43721681 | MS.gene22092:intron | 45.0% |
| !! | CTGACTGCTTTTGCACACAA+CGG | - | chr3.4:43721546-43721565 | MS.gene22092:CDS | 45.0% |
| !! | TTCGATTTTGGCGTCTAGTG+GGG | - | chr3.4:43722468-43722487 | MS.gene22092:intron | 45.0% |
| AAGAAGCAACCTGACTCCCA+AGG | + | chr3.4:43723171-43723190 | None:intergenic | 50.0% | |
| CAGATCATGTGCTATGGCCT+TGG | - | chr3.4:43723151-43723170 | MS.gene22092:CDS | 50.0% | |
| CAGTTCATGCCACGGATGAA+AGG | - | chr3.4:43722159-43722178 | MS.gene22092:intron | 50.0% | |
| CATGAACTGACCATCACTCG+GGG | + | chr3.4:43722148-43722167 | None:intergenic | 50.0% | |
| GCACACGTTTCCTATGGTTG+GGG | - | chr3.4:43723220-43723239 | MS.gene22092:CDS | 50.0% | |
| GCATGAACTGACCATCACTC+GGG | + | chr3.4:43722149-43722168 | None:intergenic | 50.0% | |
| GCCCTTCAGATCATGTGCTA+TGG | - | chr3.4:43723145-43723164 | MS.gene22092:CDS | 50.0% | |
| GGCATGAACTGACCATCACT+CGG | + | chr3.4:43722150-43722169 | None:intergenic | 50.0% | |
| GGCCATAGCACATGATCTGA+AGG | + | chr3.4:43723150-43723169 | None:intergenic | 50.0% | |
| GGTGAATTAAGGGACACCAG+AGG | + | chr3.4:43722259-43722278 | None:intergenic | 50.0% | |
| GTGATGGTCAGTTCATGCCA+CGG | - | chr3.4:43722151-43722170 | MS.gene22092:intron | 50.0% | |
| GTGCACACGTTTCCTATGGT+TGG | - | chr3.4:43723218-43723237 | MS.gene22092:CDS | 50.0% | |
| TACCACACTAGTTCCAGCTC+TGG | + | chr3.4:43722013-43722032 | None:intergenic | 50.0% | |
| TCATGCCACGGATGAAAGGA+AGG | - | chr3.4:43722163-43722182 | MS.gene22092:intron | 50.0% | |
| ! | GGGACACCAGAGGAGTTTTT+AGG | + | chr3.4:43722249-43722268 | None:intergenic | 50.0% |
| ! | GTGTGCTGCTGGTCCATAAT+TGG | - | chr3.4:43722547-43722566 | MS.gene22092:intron | 50.0% |
| ACTGACCATCACTCGGGGAA+AGG | + | chr3.4:43722143-43722162 | None:intergenic | 55.0% | |
| GACCAGAGCTGGAACTAGTG+TGG | - | chr3.4:43722008-43722027 | MS.gene22092:intron | 55.0% | |
| GATTCTGGACAGACCAGAGC+TGG | - | chr3.4:43721997-43722016 | MS.gene22092:intron | 55.0% | |
| GCAATCCTTTCCCCGAGTGA+TGG | - | chr3.4:43722135-43722154 | MS.gene22092:intron | 55.0% | |
| TGCCACGGATGAAAGGAAGG+AGG | - | chr3.4:43722166-43722185 | MS.gene22092:intron | 55.0% | |
| GGCCTCCTTCCTTTCATCCG+TGG | + | chr3.4:43722171-43722190 | None:intergenic | 60.0% | |
| ! | GTGCTATGGCCTTGGGAGTC+AGG | - | chr3.4:43723159-43723178 | MS.gene22092:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 43721525 | 43723264 | 43721525 | ID=MS.gene22092 |
| chr3.4 | mRNA | 43721525 | 43723264 | 43721525 | ID=MS.gene22092.t1;Parent=MS.gene22092 |
| chr3.4 | exon | 43723106 | 43723264 | 43723106 | ID=MS.gene22092.t1.exon1;Parent=MS.gene22092.t1 |
| chr3.4 | CDS | 43723106 | 43723264 | 43723106 | ID=cds.MS.gene22092.t1;Parent=MS.gene22092.t1 |
| chr3.4 | exon | 43722829 | 43723010 | 43722829 | ID=MS.gene22092.t1.exon2;Parent=MS.gene22092.t1 |
| chr3.4 | CDS | 43722829 | 43723010 | 43722829 | ID=cds.MS.gene22092.t1;Parent=MS.gene22092.t1 |
| chr3.4 | exon | 43722574 | 43722667 | 43722574 | ID=MS.gene22092.t1.exon3;Parent=MS.gene22092.t1 |
| chr3.4 | CDS | 43722574 | 43722667 | 43722574 | ID=cds.MS.gene22092.t1;Parent=MS.gene22092.t1 |
| chr3.4 | exon | 43721525 | 43721635 | 43721525 | ID=MS.gene22092.t1.exon4;Parent=MS.gene22092.t1 |
| chr3.4 | CDS | 43721525 | 43721635 | 43721525 | ID=cds.MS.gene22092.t1;Parent=MS.gene22092.t1 |
| Gene Sequence |
| Protein sequence |
