AlfalfaGEDB | MS.gene22143

M. sativa cultivar XinJiangDaYe / MS.gene22143

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22143.t1	XP_003599843.1	97.4	496	13	0	1	496	9	504	4.30E-274	953.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22143.t1	Q9SJG2	72.0	490	123	5	2	483	10	493	1.2e-197	690.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22143.t1	G7IXW6	97.4	496	13	0	1	496	9	504	3.1e-274	953.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006974	MS.gene22143	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22143.t1	MTR_3g047890	97.379	496	13	0	1	496	9	504	0.0	994
MS.gene22143.t1	MTR_5g091380	77.273	506	93	7	1	495	9	503	0.0	761
MS.gene22143.t1	MTR_7g111690	69.593	467	124	6	2	451	8	473	0.0	643
MS.gene22143.t1	MTR_4g123880	67.300	474	138	8	3	467	9	474	0.0	627
MS.gene22143.t1	MTR_4g123880	67.615	457	132	7	3	451	9	457	0.0	611
MS.gene22143.t1	MTR_2g046130	66.462	489	150	9	3	482	9	492	0.0	611
MS.gene22143.t1	MTR_7g111690	66.344	413	118	7	2	394	8	419	0.0	523
MS.gene22143.t1	MTR_8g028695	57.112	457	153	7	2	456	12	427	1.03e-167	482
MS.gene22143.t1	MTR_7g078730	53.763	465	193	3	2	466	12	454	1.60e-166	479
MS.gene22143.t1	MTR_5g017080	52.008	498	218	6	2	495	12	492	2.19e-164	474

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene22143.t1	AT3G59110	72.070	512	116	9	2	496	10	511	734
MS.gene22143.t1	AT2G42960	72.857	490	119	5	2	483	10	493	714
MS.gene22143.t1	AT2G42960	72.857	490	119	5	2	483	10	493	714
MS.gene22143.t1	AT2G42960	72.857	490	119	5	2	483	10	493	714
MS.gene22143.t1	AT2G42960	72.857	490	119	5	2	483	10	493	714
MS.gene22143.t1	AT1G56720	66.814	452	146	4	2	451	8	457	605
MS.gene22143.t1	AT1G56720	66.814	452	146	4	2	451	8	457	605
MS.gene22143.t1	AT1G56720	66.814	452	146	4	2	451	8	457	605
MS.gene22143.t1	AT1G56720	66.814	452	146	4	2	451	8	457	605
MS.gene22143.t1	AT1G09440	64.773	440	145	4	11	449	3	433	570

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Find 108 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTTCCCATTACTCTGG+TGG	0.608607	3.4:-42584831	None:intergenic
AACTGTTAAGAAGCAGTATA+TGG	0.401520	3.4:+42583653	MS.gene22143:CDS
AACTTAGAACAATGGTTACA+TGG	0.469294	3.4:+42584286	MS.gene22143:CDS
AAGAGTGATATTTACAGCTT+TGG	0.354743	3.4:+42584980	MS.gene22143:CDS
AAGATTGATCAATGGATCTG+AGG	0.638451	3.4:+42583824	MS.gene22143:CDS
AAGCCAGTATTAGCGTATTC+TGG	0.457184	3.4:-42584947	None:intergenic
AAGGAGAGCTGAGGAAGTCG+TGG	0.589520	3.4:+42585195	MS.gene22143:CDS
AATGCAAAGGTTTCTGATTT+TGG	0.093968	3.4:+42584770	MS.gene22143:CDS
AATGGTTACATGGGGCAATG+AGG	0.632832	3.4:+42584296	MS.gene22143:CDS
ACAAGCAGAGAAAGAATTCA+GGG	0.569784	3.4:+42583985	MS.gene22143:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTAATCATGAAACAGGG+AGG	-	chr3.4:42584215-42584234	None:intergenic	30.0%
AACTGTTAAGAAGCAGTATA+TGG	+	chr3.4:42583653-42583672	MS.gene22143:CDS	30.0%
AACTTAGAACAATGGTTACA+TGG	+	chr3.4:42584286-42584305	MS.gene22143:CDS	30.0%
AAGAGTGATATTTACAGCTT+TGG	+	chr3.4:42584980-42584999	MS.gene22143:CDS	30.0%
AATTAAATGCTACGAAGCAT+TGG	+	chr3.4:42585532-42585551	MS.gene22143:intron	30.0%
ACAATGGTAACTTAGAACAA+TGG	+	chr3.4:42584278-42584297	MS.gene22143:CDS	30.0%
ACTTAGAACAATGGTTACAT+GGG	+	chr3.4:42584287-42584306	MS.gene22143:CDS	30.0%
AGACTTCTTAACAACTTGTA+AGG	+	chr3.4:42583858-42583877	MS.gene22143:intron	30.0%
ATTAAGTTTAATGTCAGCAG+AGG	+	chr3.4:42583617-42583636	MS.gene22143:CDS	30.0%
CATGACAAGTGATAAGAATT+CGG	+	chr3.4:42583512-42583531	MS.gene22143:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	42583255	42586186	42583255	ID=MS.gene22143
chr3.4	mRNA	42583255	42586186	42583255	ID=MS.gene22143.t1;Parent=MS.gene22143
chr3.4	exon	42583255	42583874	42583255	ID=MS.gene22143.t1.exon1;Parent=MS.gene22143.t1
chr3.4	CDS	42583255	42583874	42583255	ID=cds.MS.gene22143.t1;Parent=MS.gene22143.t1
chr3.4	exon	42583982	42584086	42583982	ID=MS.gene22143.t1.exon2;Parent=MS.gene22143.t1
chr3.4	CDS	42583982	42584086	42583982	ID=cds.MS.gene22143.t1;Parent=MS.gene22143.t1
chr3.4	exon	42584255	42584377	42584255	ID=MS.gene22143.t1.exon3;Parent=MS.gene22143.t1
chr3.4	CDS	42584255	42584377	42584255	ID=cds.MS.gene22143.t1;Parent=MS.gene22143.t1
chr3.4	exon	42584685	42584855	42584685	ID=MS.gene22143.t1.exon4;Parent=MS.gene22143.t1
chr3.4	CDS	42584685	42584855	42584685	ID=cds.MS.gene22143.t1;Parent=MS.gene22143.t1
chr3.4	exon	42584937	42585066	42584937	ID=MS.gene22143.t1.exon5;Parent=MS.gene22143.t1
chr3.4	CDS	42584937	42585066	42584937	ID=cds.MS.gene22143.t1;Parent=MS.gene22143.t1
chr3.4	exon	42585157	42585366	42585157	ID=MS.gene22143.t1.exon6;Parent=MS.gene22143.t1
chr3.4	CDS	42585157	42585366	42585157	ID=cds.MS.gene22143.t1;Parent=MS.gene22143.t1
chr3.4	exon	42586052	42586186	42586052	ID=MS.gene22143.t1.exon7;Parent=MS.gene22143.t1
chr3.4	CDS	42586052	42586186	42586052	ID=cds.MS.gene22143.t1;Parent=MS.gene22143.t1

Gene Sequence

>MS.gene22143

ATGGAATTGTCGAAGAAGACTTCATTTTTGGGTTTGAGATTATGGGTTTTGATAGGAATTGGTGTTTTTGCATTTATAGTTCTGATTCTTTGTTTGTTATCTATATGGATAACGTTTCGGAGAAAAACAAGGAGGTCTGTAGACAAGTACTCGTTATCTCAAATACCGCACGTCTCGAAGGATATTAAAGTTGACAAGGTTGAAGTGCAACCTTCTAACGATCAAGTAGATAGTGTGTCTATTCATGTCCACGACAACATGACAAGTGATAAGAATTCGGATAAGTTGTTTGTTCATTTGAGCAAATCCAGTGATCCTGATAATATCAGTCAGTGTAGTTCGATTTATCACCACGAGAGAGGATTAAGTTTAATGTCAGCAGAGGATGGAAACTTTGGAACTGTTAAGAAGCAGTATATGGTAACTGCATCTCCTCTGGTTGGCTTGCCTGAAGGTTCTCATCTTGGATGGGGTCATTGGTTCACACTTAGAGATCTTGAACTTTCTACTAACCGTTTCTCGGCTGAGAATGTGATTGGTGAGGGCGGATATGGAGTTGTTTATAAGGGAAGATTGATCAATGGATCTGAGGTCGCGGTGAAGAGACTTCTTAACAACTTGTAAGGGCACTTTAGGGTTTGATTGATACCCTTTTTAGTTTTCTCTTGTGGCACTTATCTTATTGAGATTATTTCATTCTTCAACAATGTCCTTTATTTCTTTATAGGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTCGAGGCTATAGGTCATGTCAGACATAAAAATCTTGTGCGCTTACTTGGATTTTGCGTAGAAGGAGTTCACAGGTAACCTTTGTCTTCGTTAAATGTATCGAAATTGCTACTCGATAACGTTTCAAACTTTGCGTTTGTGACAATCTTTTCTGTTGGTAAATTTTTAACAGATGCTCTTCTGTTTATTATATTATATGCCTCCCTGTTTCATGATTAATTTAGTTTCTAACTGATTTTCAGGTTGCTTGTGTATGAGTATGTGAACAATGGTAACTTAGAACAATGGTTACATGGGGCAATGAGGCAACATGGAATACTTACGTGGGAAGCTCGAATGAAAGTTATTCTCGGCACAGCGAAAGCGTAAGTTCAATTTGAAAAATTGGAAACATGAACGATGTCAATCATTTCCATTGCTGTCTTGTGCAAAATTGATTTGTTAAATCACGATCGTCTGAATTTCATGTTCCATAGTTTAAGATGTTTATGATATGCTTATCGAAGTCCTGTGTCCTGTCATTTGAGAGTTTATGTCGATAATTGTTAAGTTTTTTCCTATACGTCCTCAAATTTGTTGAAGTTATTTCGTATGTACTTGCTATGTTAGTTTCAGATTTAGACCTAAATTTCTGAGTAATTAAAATCCCCATTTTACCGTGACTTGTGACAGGCTTGCTTATTTTCATGAAGCAATAGAACCAAAAGTTGTTCACCGAGATATAAAGTCAAGCAACATTTTAATTGATAGCGAGTTCAATGCAAAGGTTTCTGATTTTGGTTTAGCCAAACTTTTGGATTCCGGAGAAAGTCACATAACCACCAGAGTAATGGGAACATTTGGGTATGCTGAAATTTTTCATTATTTTTCAAATTTATTTGAAAGATTTAACAAATGGAAACTAACTTCTGTTTTCCATTTCAGTTACGTTGCACCAGAATACGCTAATACTGGCTTGTTAAACGAAAAGAGTGATATTTACAGCTTTGGTGTTCTCCTACTAGAAGCGATTACCGGAAGGGACCCTGTAGACTATACACGTCCTGCCAATGAGGTTTCAAATATGCGTCTCTGTTTTCCATCGAAAGCGATGATACAATTGCCTTTCATATAGCTGATAAGATTTTTATTATTCTGATGACAGGTGAATCTTGTTGAGTGGCTGAAGATGATGGTGGGCTCAAGGAGAGCTGAGGAAGTCGTGGACTCTAGCCTTGAAGTGAAACCACCAACACGTGCTTTAAAGCGTGCCCTTCTTGTTGCATTTAGGTGTGTTGATCCTGATTCAGAGAAGAGACCCAAAATGAGTCAGGTTGTGAGGATGCTTGAAGCTGATGAATATCCATTCAGAGAGGTTCCTTTCATTATCTTATCTTGTCTATCGATTCCTTGCTTTTGTTATGCTACATCACTGCGAATGCATACTTTTTACATAGCTTTTCTGTGCATGACATTCTAATGTGAGTGATATGAAGAGCTATTGTATTGGTATGTCTTCATCGTTGAGTATTGAGGATGGAATTAAATGCTACGAAGCATTGGCAATGACACCGACACTACATTAACACCGACACCGGACATGACACCTACACTGACAGATACACCTGTAATAATTTGATAAAATAGATGTGATTGTATTTAATCACAAGTGTTAGTATGGTGTTGCTGTCAGACACCGACACATGTCAGTTACTCGAACGTGCCTTGAATCTCGAATGTAGGTGCCACATAGATTGAATGTGCCTTCATGAGTAGTTAGTCACGCTTTACAGTCATCCAAAATAGTAAATGATAGTATAATGATTGTCATATTACAAAAAGAATGCTAGATTTCATTTTAATGTTTGTTGTGTTATGCTTCCATTTGTGTGGAGTTATTGATGAACTTGAAAGACTAATATGATGATGGCTAACCCGTTTTGCTTTCGCAAAACTCATCCTTTGAAGCAGTATGCATGACTTTTTTCATAATTTATATGAACTAAATATTCATCTCTTAACCTAATTTAAGTTAAACATGTCATTGGTATCCCTTTCAGGATCGAAGGAATAGAAAAAGCCGCACCGCCAGCATGGACATTGTTGAATCTCTGAAGGATATCTCTGGTCCTTCTGATACTGCTGATAAGACGAAAGGTTTTGAAGAATGCGCACCTGAGACAACTCAAGGGTAG

Protein sequence

>MS.gene22143.t1

MELSKKTSFLGLRLWVLIGIGVFAFIVLILCLLSIWITFRRKTRRSVDKYSLSQIPHVSKDIKVDKVEVQPSNDQVDSVSIHVHDNMTSDKNSDKLFVHLSKSSDPDNISQCSSIYHHERGLSLMSAEDGNFGTVKKQYMVTASPLVGLPEGSHLGWGHWFTLRDLELSTNRFSAENVIGEGGYGVVYKGRLINGSEVAVKRLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGFCVEGVHRLLVYEYVNNGNLEQWLHGAMRQHGILTWEARMKVILGTAKALAYFHEAIEPKVVHRDIKSSNILIDSEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYTRPANEVNLVEWLKMMVGSRRAEEVVDSSLEVKPPTRALKRALLVAFRCVDPDSEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMDIVESLKDISGPSDTADKTKGFEECAPETTQG