Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23169.t1 | XP_003622734.2 | 99.2 | 509 | 4 | 0 | 53 | 561 | 48 | 556 | 1.8e-308 | 1067.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23169.t1 | Q9SU40 | 69.5 | 512 | 153 | 3 | 53 | 561 | 44 | 555 | 3.8e-219 | 762.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23169.t1 | G7KX02 | 99.2 | 509 | 4 | 0 | 53 | 561 | 48 | 556 | 1.3e-308 | 1067.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051248 | MS.gene23169 | 0.882622 | 8.92E-71 | -1.69E-46 |
MS.gene051251 | MS.gene23169 | 0.820049 | 8.42E-53 | -1.69E-46 |
MS.gene056228 | MS.gene23169 | 0.819306 | 1.24E-52 | -1.69E-46 |
MS.gene059154 | MS.gene23169 | 0.826238 | 3.03E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23169.t1 | MTR_7g051440 | 99.214 | 509 | 4 | 0 | 53 | 561 | 48 | 556 | 0.0 | 1041 |
MS.gene23169.t1 | MTR_4g101650 | 70.508 | 512 | 148 | 3 | 53 | 561 | 46 | 557 | 0.0 | 740 |
MS.gene23169.t1 | MTR_3g008580 | 64.453 | 512 | 179 | 3 | 53 | 561 | 48 | 559 | 0.0 | 696 |
MS.gene23169.t1 | MTR_3g115050 | 52.165 | 508 | 217 | 9 | 55 | 557 | 51 | 537 | 1.93e-174 | 504 |
MS.gene23169.t1 | MTR_4g049390 | 49.405 | 504 | 235 | 7 | 53 | 554 | 46 | 531 | 1.28e-165 | 482 |
MS.gene23169.t1 | MTR_1g026410 | 50.690 | 507 | 224 | 9 | 53 | 554 | 48 | 533 | 4.71e-165 | 480 |
MS.gene23169.t1 | MTR_4g075690 | 49.206 | 504 | 235 | 8 | 53 | 554 | 49 | 533 | 3.96e-163 | 475 |
MS.gene23169.t1 | MTR_8g479390 | 49.412 | 510 | 231 | 8 | 53 | 557 | 50 | 537 | 7.11e-163 | 475 |
MS.gene23169.t1 | MTR_5g018270 | 50.895 | 503 | 225 | 8 | 53 | 554 | 50 | 531 | 9.32e-163 | 474 |
MS.gene23169.t1 | MTR_1g090707 | 49.901 | 505 | 238 | 9 | 54 | 554 | 44 | 537 | 1.06e-160 | 471 |
MS.gene23169.t1 | MTR_4g048350 | 48.810 | 504 | 237 | 8 | 53 | 554 | 46 | 530 | 3.00e-159 | 465 |
MS.gene23169.t1 | MTR_2g088080 | 49.703 | 505 | 232 | 8 | 53 | 554 | 49 | 534 | 1.65e-158 | 463 |
MS.gene23169.t1 | MTR_4g083190 | 48.162 | 517 | 243 | 10 | 53 | 561 | 46 | 545 | 5.16e-157 | 460 |
MS.gene23169.t1 | MTR_8g479380 | 47.461 | 512 | 242 | 9 | 55 | 561 | 50 | 539 | 9.76e-156 | 456 |
MS.gene23169.t1 | MTR_4g132320 | 48.915 | 507 | 239 | 8 | 53 | 557 | 50 | 538 | 1.78e-153 | 451 |
MS.gene23169.t1 | MTR_4g083210 | 46.887 | 514 | 246 | 10 | 55 | 561 | 46 | 539 | 1.52e-147 | 436 |
MS.gene23169.t1 | MTR_2g088080 | 49.153 | 472 | 218 | 8 | 86 | 554 | 1 | 453 | 1.04e-145 | 428 |
MS.gene23169.t1 | MTR_3g083430 | 45.437 | 515 | 260 | 9 | 53 | 561 | 44 | 543 | 3.97e-145 | 430 |
MS.gene23169.t1 | MTR_3g083390 | 45.243 | 515 | 261 | 9 | 53 | 561 | 44 | 543 | 9.44e-145 | 429 |
MS.gene23169.t1 | MTR_3g083440 | 45.068 | 517 | 259 | 8 | 53 | 561 | 44 | 543 | 1.29e-144 | 428 |
MS.gene23169.t1 | MTR_3g083450 | 45.455 | 517 | 257 | 8 | 53 | 561 | 45 | 544 | 2.37e-144 | 428 |
MS.gene23169.t1 | MTR_3g083410 | 44.595 | 518 | 266 | 9 | 50 | 561 | 5 | 507 | 1.17e-143 | 425 |
MS.gene23169.t1 | MTR_3g083400 | 44.874 | 517 | 260 | 8 | 53 | 561 | 44 | 543 | 3.91e-143 | 424 |
MS.gene23169.t1 | MTR_4g075690 | 49.043 | 418 | 193 | 7 | 53 | 469 | 49 | 447 | 1.43e-130 | 389 |
MS.gene23169.t1 | MTR_5g020600 | 29.006 | 493 | 308 | 17 | 54 | 519 | 54 | 531 | 1.53e-51 | 186 |
MS.gene23169.t1 | MTR_3g078740 | 27.304 | 575 | 337 | 21 | 45 | 559 | 37 | 590 | 3.16e-50 | 182 |
MS.gene23169.t1 | MTR_5g020620 | 29.472 | 492 | 306 | 15 | 54 | 519 | 50 | 526 | 1.17e-49 | 180 |
MS.gene23169.t1 | MTR_8g091390 | 28.918 | 536 | 325 | 17 | 54 | 554 | 54 | 568 | 6.68e-44 | 164 |
MS.gene23169.t1 | MTR_5g069680 | 27.553 | 519 | 336 | 17 | 54 | 547 | 47 | 550 | 5.29e-42 | 159 |
MS.gene23169.t1 | MTR_4g015120 | 25.787 | 508 | 306 | 16 | 54 | 519 | 44 | 522 | 8.96e-42 | 158 |
MS.gene23169.t1 | MTR_4g133150 | 42.222 | 225 | 94 | 7 | 138 | 360 | 21 | 211 | 1.61e-41 | 149 |
MS.gene23169.t1 | MTR_7g062250 | 27.256 | 554 | 325 | 22 | 21 | 519 | 13 | 543 | 1.73e-41 | 158 |
MS.gene23169.t1 | MTR_3g078700 | 26.354 | 554 | 310 | 21 | 45 | 554 | 37 | 536 | 6.22e-41 | 155 |
MS.gene23169.t1 | MTR_3g462760 | 26.346 | 520 | 340 | 16 | 54 | 547 | 46 | 548 | 8.67e-41 | 155 |
MS.gene23169.t1 | MTR_8g027375 | 27.639 | 521 | 302 | 20 | 54 | 527 | 54 | 546 | 3.59e-39 | 151 |
MS.gene23169.t1 | MTR_5g081810 | 26.275 | 510 | 296 | 19 | 55 | 519 | 20 | 494 | 1.03e-38 | 149 |
MS.gene23169.t1 | MTR_7g060460 | 28.244 | 524 | 323 | 23 | 44 | 526 | 44 | 555 | 9.85e-38 | 147 |
MS.gene23169.t1 | MTR_5g073210 | 28.711 | 512 | 322 | 21 | 46 | 527 | 37 | 535 | 1.89e-37 | 146 |
MS.gene23169.t1 | MTR_4g064530 | 26.426 | 526 | 315 | 19 | 40 | 519 | 51 | 550 | 4.01e-37 | 145 |
MS.gene23169.t1 | MTR_7g458880 | 26.706 | 513 | 327 | 20 | 53 | 526 | 52 | 554 | 7.97e-37 | 144 |
MS.gene23169.t1 | MTR_7g058690 | 27.239 | 547 | 336 | 24 | 23 | 526 | 27 | 554 | 2.54e-36 | 143 |
MS.gene23169.t1 | MTR_4g064530 | 26.554 | 531 | 316 | 20 | 40 | 522 | 51 | 555 | 1.01e-35 | 141 |
MS.gene23169.t1 | MTR_3g078730 | 25.824 | 546 | 315 | 20 | 54 | 559 | 45 | 540 | 2.03e-35 | 140 |
MS.gene23169.t1 | MTR_5g083360 | 26.493 | 536 | 335 | 18 | 23 | 519 | 17 | 532 | 2.46e-35 | 140 |
MS.gene23169.t1 | MTR_3g071890 | 27.713 | 516 | 314 | 18 | 50 | 527 | 49 | 543 | 4.12e-34 | 136 |
MS.gene23169.t1 | MTR_7g065980 | 26.937 | 542 | 339 | 20 | 31 | 526 | 15 | 545 | 1.06e-32 | 132 |
MS.gene23169.t1 | MTR_7g065970 | 26.493 | 536 | 336 | 20 | 42 | 536 | 34 | 552 | 2.98e-32 | 131 |
MS.gene23169.t1 | MTR_3g101640 | 25.869 | 518 | 335 | 18 | 54 | 536 | 50 | 553 | 8.06e-31 | 127 |
MS.gene23169.t1 | MTR_2g008330 | 26.008 | 496 | 328 | 15 | 54 | 519 | 58 | 544 | 1.08e-30 | 126 |
MS.gene23169.t1 | MTR_7g062310 | 25.192 | 520 | 337 | 17 | 54 | 533 | 67 | 574 | 1.01e-29 | 124 |
MS.gene23169.t1 | MTR_4g019225 | 25.749 | 501 | 318 | 18 | 54 | 514 | 46 | 532 | 1.11e-29 | 123 |
MS.gene23169.t1 | MTR_3g101635 | 25.185 | 540 | 356 | 17 | 28 | 536 | 26 | 548 | 1.65e-29 | 123 |
MS.gene23169.t1 | MTR_4g133160 | 35.354 | 99 | 50 | 2 | 436 | 534 | 1 | 85 | 9.30e-13 | 64.7 |
MS.gene23169.t1 | MTR_5g018290 | 50.000 | 60 | 29 | 1 | 496 | 554 | 5 | 64 | 1.68e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23169.t1 | AT5G48450 | 77.104 | 511 | 107 | 3 | 53 | 561 | 48 | 550 | 0.0 | 811 |
MS.gene23169.t1 | AT5G48450 | 77.104 | 511 | 107 | 3 | 53 | 561 | 48 | 550 | 0.0 | 810 |
MS.gene23169.t1 | AT4G12420 | 69.531 | 512 | 153 | 3 | 53 | 561 | 44 | 555 | 0.0 | 746 |
MS.gene23169.t1 | AT4G12420 | 69.531 | 512 | 153 | 3 | 53 | 561 | 44 | 555 | 0.0 | 746 |
MS.gene23169.t1 | AT5G51480 | 61.988 | 513 | 190 | 5 | 53 | 561 | 47 | 558 | 0.0 | 691 |
MS.gene23169.t1 | AT4G25240 | 63.281 | 512 | 184 | 4 | 53 | 561 | 48 | 558 | 0.0 | 686 |
MS.gene23169.t1 | AT4G25240 | 63.281 | 512 | 184 | 4 | 53 | 561 | 48 | 558 | 0.0 | 686 |
MS.gene23169.t1 | AT1G21860 | 49.130 | 517 | 229 | 11 | 53 | 561 | 48 | 538 | 7.76e-167 | 485 |
MS.gene23169.t1 | AT1G21850 | 48.718 | 507 | 232 | 9 | 53 | 554 | 48 | 531 | 1.35e-164 | 479 |
MS.gene23169.t1 | AT1G76160 | 48.235 | 510 | 237 | 9 | 53 | 557 | 47 | 534 | 3.05e-160 | 468 |
MS.gene23169.t1 | AT4G22010 | 49.902 | 509 | 226 | 9 | 53 | 554 | 45 | 531 | 3.33e-159 | 465 |
MS.gene23169.t1 | AT1G55570 | 46.575 | 511 | 253 | 8 | 53 | 557 | 48 | 544 | 1.70e-158 | 464 |
MS.gene23169.t1 | AT1G41830 | 48.718 | 507 | 233 | 10 | 53 | 554 | 48 | 532 | 2.19e-157 | 461 |
MS.gene23169.t1 | AT4G38420 | 48.134 | 509 | 242 | 7 | 55 | 557 | 51 | 543 | 6.22e-157 | 460 |
MS.gene23169.t1 | AT5G66920 | 47.619 | 504 | 242 | 7 | 53 | 554 | 56 | 539 | 2.61e-156 | 458 |
MS.gene23169.t1 | AT3G13390 | 47.276 | 514 | 245 | 9 | 53 | 557 | 47 | 543 | 2.97e-156 | 458 |
MS.gene23169.t1 | AT4G28090 | 48.249 | 514 | 231 | 11 | 55 | 557 | 49 | 538 | 6.39e-155 | 455 |
MS.gene23169.t1 | AT1G75790 | 46.435 | 519 | 239 | 11 | 53 | 554 | 46 | 542 | 3.26e-152 | 447 |
MS.gene23169.t1 | AT1G55560 | 46.214 | 515 | 252 | 9 | 53 | 559 | 45 | 542 | 4.98e-152 | 447 |
MS.gene23169.t1 | AT3G13400 | 46.214 | 515 | 252 | 9 | 53 | 559 | 46 | 543 | 4.33e-150 | 442 |
MS.gene23169.t1 | AT3G13400 | 46.214 | 515 | 252 | 9 | 53 | 559 | 46 | 543 | 4.33e-150 | 442 |
MS.gene23169.t1 | AT4G37160 | 47.327 | 505 | 244 | 9 | 53 | 554 | 50 | 535 | 8.97e-146 | 431 |
MS.gene23169.t1 | AT2G23630 | 46.825 | 504 | 247 | 8 | 53 | 554 | 49 | 533 | 8.88e-139 | 413 |
MS.gene23169.t1 | AT2G23630 | 46.825 | 504 | 247 | 8 | 53 | 554 | 54 | 538 | 1.47e-138 | 413 |
MS.gene23169.t1 | AT4G38420 | 48.098 | 447 | 211 | 6 | 55 | 496 | 51 | 481 | 2.18e-135 | 403 |
MS.gene23169.t1 | AT4G38420 | 48.095 | 420 | 197 | 6 | 55 | 469 | 51 | 454 | 4.45e-125 | 375 |
MS.gene23169.t1 | AT4G37160 | 47.255 | 419 | 200 | 8 | 53 | 469 | 50 | 449 | 3.00e-119 | 360 |
MS.gene23169.t1 | AT4G39830 | 28.676 | 544 | 324 | 19 | 54 | 554 | 56 | 578 | 4.41e-53 | 190 |
MS.gene23169.t1 | AT5G21105 | 28.757 | 539 | 328 | 18 | 54 | 555 | 58 | 577 | 3.72e-51 | 185 |
MS.gene23169.t1 | AT5G21105 | 29.032 | 496 | 300 | 17 | 54 | 512 | 58 | 538 | 5.13e-46 | 170 |
MS.gene23169.t1 | AT5G21100 | 26.277 | 548 | 329 | 17 | 54 | 555 | 44 | 562 | 1.72e-44 | 166 |
MS.gene23169.t1 | AT4G39830 | 28.169 | 497 | 294 | 18 | 100 | 554 | 6 | 481 | 2.20e-43 | 161 |
MS.gene23169.t1 | AT4G39830 | 28.169 | 497 | 294 | 18 | 100 | 554 | 8 | 483 | 2.46e-43 | 161 |
MS.gene23169.t1 | AT2G30210 | 26.531 | 539 | 340 | 18 | 23 | 519 | 11 | 535 | 1.13e-41 | 158 |
MS.gene23169.t1 | AT5G03260 | 28.659 | 492 | 310 | 17 | 54 | 519 | 46 | 522 | 3.63e-41 | 157 |
MS.gene23169.t1 | AT5G58910 | 27.110 | 557 | 344 | 20 | 30 | 550 | 31 | 561 | 2.63e-40 | 154 |
MS.gene23169.t1 | AT5G48100 | 27.462 | 528 | 323 | 19 | 30 | 519 | 23 | 528 | 2.89e-40 | 154 |
MS.gene23169.t1 | AT1G18140 | 25.954 | 524 | 324 | 17 | 53 | 527 | 48 | 556 | 3.07e-40 | 154 |
MS.gene23169.t1 | AT5G58910 | 27.205 | 533 | 332 | 19 | 54 | 550 | 50 | 562 | 8.46e-40 | 153 |
MS.gene23169.t1 | AT2G46570 | 27.621 | 496 | 318 | 18 | 53 | 519 | 51 | 534 | 9.14e-39 | 150 |
MS.gene23169.t1 | AT4G39830 | 27.364 | 497 | 285 | 18 | 100 | 554 | 8 | 470 | 9.46e-39 | 148 |
MS.gene23169.t1 | AT5G58910 | 27.400 | 500 | 305 | 18 | 54 | 519 | 13 | 488 | 3.68e-37 | 145 |
MS.gene23169.t1 | AT5G01190 | 26.465 | 495 | 321 | 18 | 53 | 519 | 44 | 523 | 5.45e-36 | 142 |
MS.gene23169.t1 | AT5G01190 | 25.528 | 521 | 344 | 19 | 27 | 519 | 5 | 509 | 6.76e-36 | 141 |
MS.gene23169.t1 | AT5G09360 | 25.688 | 545 | 360 | 15 | 8 | 519 | 2 | 534 | 1.14e-35 | 141 |
MS.gene23169.t1 | AT2G38080 | 24.597 | 496 | 323 | 15 | 55 | 519 | 48 | 523 | 3.87e-35 | 139 |
MS.gene23169.t1 | AT5G60020 | 27.168 | 519 | 320 | 20 | 54 | 526 | 13 | 519 | 9.07e-35 | 138 |
MS.gene23169.t1 | AT5G60020 | 27.168 | 519 | 320 | 20 | 54 | 526 | 45 | 551 | 1.16e-34 | 138 |
MS.gene23169.t1 | AT2G29130 | 24.952 | 517 | 317 | 14 | 50 | 519 | 46 | 538 | 4.27e-34 | 136 |
MS.gene23169.t1 | AT5G05390 | 25.379 | 528 | 348 | 14 | 31 | 519 | 10 | 530 | 3.64e-33 | 134 |
MS.gene23169.t1 | AT5G60020 | 27.075 | 506 | 313 | 19 | 54 | 515 | 45 | 538 | 7.53e-33 | 132 |
MS.gene23169.t1 | AT3G09220 | 25.400 | 500 | 319 | 15 | 53 | 514 | 44 | 527 | 2.70e-32 | 131 |
MS.gene23169.t1 | AT5G21105 | 29.014 | 355 | 216 | 11 | 220 | 555 | 49 | 386 | 3.21e-31 | 125 |
MS.gene23169.t1 | AT2G40370 | 25.641 | 546 | 320 | 19 | 30 | 519 | 30 | 545 | 7.67e-31 | 127 |
MS.gene23169.t1 | AT5G07130 | 24.909 | 550 | 366 | 16 | 23 | 538 | 17 | 553 | 1.09e-30 | 126 |
MS.gene23169.t1 | AT2G46570 | 27.332 | 461 | 294 | 18 | 88 | 519 | 1 | 449 | 2.06e-30 | 124 |
MS.gene23169.t1 | AT5G01040 | 25.651 | 538 | 331 | 18 | 53 | 547 | 46 | 557 | 2.61e-30 | 125 |
MS.gene23169.t1 | AT5G01050 | 26.226 | 530 | 331 | 20 | 57 | 547 | 51 | 559 | 1.56e-29 | 123 |
MS.gene23169.t1 | AT3G09220 | 24.324 | 444 | 284 | 13 | 107 | 514 | 3 | 430 | 1.42e-22 | 101 |
MS.gene23169.t1 | AT5G07130 | 24.580 | 476 | 316 | 15 | 97 | 538 | 2 | 468 | 3.53e-20 | 94.4 |
MS.gene23169.t1 | AT5G07130 | 24.580 | 476 | 316 | 15 | 97 | 538 | 2 | 468 | 3.53e-20 | 94.4 |
Find 159 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTATTTCTATTTCAGGTAAT+TGG | 0.140932 | 7.2:+51013373 | MS.gene23169:intron |
CTGAATTGTAGCATGGATTT+TGG | 0.148435 | 7.2:+51016773 | MS.gene23169:intron |
TCTCAACAAGCTTGAATTTC+AGG | 0.151787 | 7.2:+51015742 | MS.gene23169:CDS |
CTGTCTCTTTAGGTCTTTCC+TGG | 0.176907 | 7.2:+51019478 | MS.gene23169:intron |
CCGCAAGGTTCCTTCAAATA+TGG | 0.204674 | 7.2:+51016349 | MS.gene23169:CDS |
CAGGTTCCACATTTATTATT+TGG | 0.217288 | 7.2:-51014054 | None:intergenic |
GTTGATGTCTCTCTCATTAA+TGG | 0.231586 | 7.2:+51016565 | MS.gene23169:CDS |
CAACTTGAAGATAAGATTCT+TGG | 0.239119 | 7.2:-51019585 | None:intergenic |
GGCCTGTTCATCCATCTATT+TGG | 0.241957 | 7.2:-51016535 | None:intergenic |
GATTCTGAGCTCTTTCTAAA+TGG | 0.245386 | 7.2:+51012649 | MS.gene23169:CDS |
CTAAACTTCCAGAGAGCTTC+TGG | 0.250978 | 7.2:+51013717 | MS.gene23169:CDS |
ATTTGGTAAGTTATGCCATT+TGG | 0.292435 | 7.2:-51014037 | None:intergenic |
TTGAAGGAACCTTGCGGGTT+TGG | 0.295134 | 7.2:-51016343 | None:intergenic |
TTTAGGTCTTTCCTGGGGCT+TGG | 0.295657 | 7.2:+51019485 | MS.gene23169:intron |
ACCTGGCAAGACGGAGTTTC+AGG | 0.310758 | 7.2:+51013606 | MS.gene23169:CDS |
AATCCTGTATATAAAGAAAA+TGG | 0.311190 | 7.2:+51012753 | MS.gene23169:CDS |
CCACAGTATATTGCATTATC+AGG | 0.312549 | 7.2:-51019643 | None:intergenic |
CAGAGAGCTTCTGGAGGATA+TGG | 0.316696 | 7.2:+51013726 | MS.gene23169:CDS |
AAGTGGCGAACTACCCTTAA+TGG | 0.317844 | 7.2:+51016433 | MS.gene23169:CDS |
GTAAATACGATATACCATTA+AGG | 0.323807 | 7.2:-51016447 | None:intergenic |
CAATTCCAGCCGGCTGGAAT+TGG | 0.326836 | 7.2:-51013639 | None:intergenic |
CAATTCCAGCCGGCTGGAAT+TGG | 0.326836 | 7.2:+51013640 | MS.gene23169:CDS |
AATTCTCAGGGTCCTGCTTC+AGG | 0.329832 | 7.2:+51015978 | MS.gene23169:CDS |
GGTGTTCTTATCAATGGATT+TGG | 0.349689 | 7.2:+51013986 | MS.gene23169:CDS |
TTTGGTAAGTTATGCCATTT+GGG | 0.355633 | 7.2:-51014036 | None:intergenic |
GGGATCAATAAGCAATTTCC+TGG | 0.358463 | 7.2:+51013394 | MS.gene23169:CDS |
CACTTTCCGTTTATAAGCTC+TGG | 0.359937 | 7.2:-51016415 | None:intergenic |
CTCAGGAAGGATGTGGAAAA+TGG | 0.363410 | 7.2:+51013941 | MS.gene23169:CDS |
GATATGCATTCTTTGTTGTT+GGG | 0.369756 | 7.2:+51016659 | MS.gene23169:CDS |
CCTGATGGTGTTCTTATCAA+TGG | 0.371085 | 7.2:+51013980 | MS.gene23169:CDS |
CCATCTAACTTTCTTTATGA+TGG | 0.375024 | 7.2:+51012720 | MS.gene23169:CDS |
TTTGCACTACGCTAATTCTC+AGG | 0.376438 | 7.2:+51015965 | MS.gene23169:CDS |
GGATATGCATTCTTTGTTGT+TGG | 0.378228 | 7.2:+51016658 | MS.gene23169:CDS |
CTCTTGACAATGCTGGCATT+TGG | 0.381859 | 7.2:+51019524 | MS.gene23169:CDS |
CGCAACATTATAAAATTCTC+GGG | 0.382792 | 7.2:+51016494 | MS.gene23169:CDS |
GCAGTTATTCCTGTTCCGTT+TGG | 0.384313 | 7.2:+51013771 | MS.gene23169:CDS |
TATTTCTATTTCAGGTAATT+GGG | 0.386004 | 7.2:+51013374 | MS.gene23169:intron |
TTTCAAGTTAAAGATCAGAT+AGG | 0.391734 | 7.2:+51013672 | MS.gene23169:CDS |
TTCCAAATAGATGGATGAAC+AGG | 0.391905 | 7.2:+51016533 | MS.gene23169:CDS |
TTCTAAATGTCACCACAAAC+TGG | 0.393931 | 7.2:+51013422 | MS.gene23169:CDS |
CATATTTGAAGGAACCTTGC+GGG | 0.394706 | 7.2:-51016348 | None:intergenic |
CGCAAGGTTCCTTCAAATAT+GGG | 0.395338 | 7.2:+51016350 | MS.gene23169:CDS |
TAAGGAACTCTTACCTTTGA+AGG | 0.397795 | 7.2:-51019678 | None:intergenic |
GCGCAACATTATAAAATTCT+CGG | 0.405379 | 7.2:+51016493 | MS.gene23169:CDS |
CTCGGTTTGTTAATTCATCA+TGG | 0.407907 | 7.2:+51015919 | MS.gene23169:CDS |
CACTGTCCAGTCCTACCATT+TGG | 0.410601 | 7.2:+51016633 | MS.gene23169:CDS |
GTGGAAAATGGCGTTGATCT+TGG | 0.416391 | 7.2:+51013953 | MS.gene23169:CDS |
TGTCTCTTTAGGTCTTTCCT+GGG | 0.417536 | 7.2:+51019479 | MS.gene23169:intron |
AGAATTAGCGTAGTGCAAAA+TGG | 0.421537 | 7.2:-51015961 | None:intergenic |
GTGTTACCAATGCAGAAGTA+AGG | 0.423358 | 7.2:-51013482 | None:intergenic |
GCAGAAGTACTTACAATAAG+TGG | 0.423526 | 7.2:+51016813 | MS.gene23169:CDS |
AGAGAGACATCAACTTTAGA+AGG | 0.425069 | 7.2:-51016556 | None:intergenic |
CATATCCTCCAGAAGCTCTC+TGG | 0.426816 | 7.2:-51013725 | None:intergenic |
GATGGACCCGTAGGCCCAAT+AGG | 0.428752 | 7.2:-51012702 | None:intergenic |
CTGGACTGTGTATGATCCTT+CGG | 0.430254 | 7.2:-51015796 | None:intergenic |
AACCTCAACTCCTGGTATCT+AGG | 0.437891 | 7.2:+51019562 | MS.gene23169:CDS |
ATTGTCAAGAGATACTAAAA+TGG | 0.438940 | 7.2:-51019512 | None:intergenic |
GACAACCACATTCCAGTTTG+TGG | 0.439624 | 7.2:-51013434 | None:intergenic |
TCCTGAAACTCCGTCTTGCC+AGG | 0.441958 | 7.2:-51013607 | None:intergenic |
CGGCAAGACCTTGTGACTCT+TGG | 0.447025 | 7.2:-51013838 | None:intergenic |
GCCGGCTGGAATTGGACAAT+TGG | 0.449552 | 7.2:-51013631 | None:intergenic |
TTTGTGGTGACATTTAGAAT+TGG | 0.455070 | 7.2:-51013418 | None:intergenic |
CCATCATAAAGAAAGTTAGA+TGG | 0.459496 | 7.2:-51012720 | None:intergenic |
TTAGTATCTCTTGACAATGC+TGG | 0.464781 | 7.2:+51019517 | MS.gene23169:CDS |
ATGAACCCTTACTTCTGCAT+TGG | 0.466031 | 7.2:+51013476 | MS.gene23169:CDS |
TCTGGCAATCCAAACGGAAC+AGG | 0.467476 | 7.2:-51013780 | None:intergenic |
TTTAGGTCGCACAAGCTGAT+TGG | 0.468010 | 7.2:-51012674 | None:intergenic |
TAAATACGATATACCATTAA+GGG | 0.469026 | 7.2:-51016446 | None:intergenic |
TCATCATGGACTAGAGCTAC+TGG | 0.469718 | 7.2:+51015933 | MS.gene23169:CDS |
ATACCAGGAGTTGAGGTTCT+CGG | 0.471199 | 7.2:-51019557 | None:intergenic |
CTTTCTTTATGATGGCGAAT+CGG | 0.472234 | 7.2:+51012728 | MS.gene23169:CDS |
TAAAGAAAATGGAGCACAAA+GGG | 0.472612 | 7.2:+51012764 | MS.gene23169:CDS |
ACCTTTGAAGGGAGGAAAGT+AGG | 0.478906 | 7.2:-51019666 | None:intergenic |
ATCCATCCAAATGGTAGGAC+TGG | 0.480355 | 7.2:-51016639 | None:intergenic |
TTATAATATTTCTCAGTGAC+TGG | 0.483609 | 7.2:+51013811 | MS.gene23169:CDS |
CGGGTTTGGACGTGCAGCAC+CGG | 0.485660 | 7.2:-51016329 | None:intergenic |
AGACCTCCAGAGCTTATAAA+CGG | 0.490187 | 7.2:+51016409 | MS.gene23169:CDS |
TATGTCCAATTCCAGCCGGC+TGG | 0.494748 | 7.2:-51013645 | None:intergenic |
GCTTGATTTATAGAGAAAGA+AGG | 0.497123 | 7.2:-51016032 | None:intergenic |
ATATTGTGAAACAGGATCTC+AGG | 0.497669 | 7.2:+51013924 | MS.gene23169:intron |
ATTGTCCAATTCCAGCCGGC+TGG | 0.498333 | 7.2:+51013634 | MS.gene23169:CDS |
ACTACATTGTTGCCAGTCCT+CGG | 0.498976 | 7.2:+51015901 | MS.gene23169:CDS |
AATATTATAACATCACCATC+TGG | 0.504823 | 7.2:-51013798 | None:intergenic |
AGTAATGTCCCCATATTTGA+AGG | 0.510105 | 7.2:-51016359 | None:intergenic |
TTCAAGTTAAAGATCAGATA+GGG | 0.510141 | 7.2:+51013673 | MS.gene23169:CDS |
AAATCACAACTTACTTCTAG+TGG | 0.511161 | 7.2:+51015770 | MS.gene23169:CDS |
GCCTACTTTCCTCCCTTCAA+AGG | 0.512657 | 7.2:+51019665 | MS.gene23169:CDS |
AAAAGAGCCTATTGGGCCTA+CGG | 0.513131 | 7.2:+51012695 | MS.gene23169:CDS |
CAGGGAAAACATATCGCATA+CGG | 0.515730 | 7.2:+51015703 | MS.gene23169:intron |
TGAATTAACAAACCGAGGAC+TGG | 0.523363 | 7.2:-51015913 | None:intergenic |
GCAAGCGTCAAAGGTGTTGA+AGG | 0.524650 | 7.2:-51016472 | None:intergenic |
AAGGAACTCTTACCTTTGAA+GGG | 0.533882 | 7.2:-51019677 | None:intergenic |
AGTGTGTCATCGTAGCGATA+AGG | 0.537764 | 7.2:-51014010 | None:intergenic |
AAAGAGCCTATTGGGCCTAC+GGG | 0.537790 | 7.2:+51012696 | MS.gene23169:CDS |
AAGGATTATCTTGATCAGAA+AGG | 0.538276 | 7.2:-51016013 | None:intergenic |
AGAATGCATATCCATCCAAA+TGG | 0.541106 | 7.2:-51016648 | None:intergenic |
TAAATCAAGCAAGATCAGTA+AGG | 0.541371 | 7.2:+51016045 | MS.gene23169:CDS |
TAATGTTGCGCAAGCGTCAA+AGG | 0.542306 | 7.2:-51016481 | None:intergenic |
CCATTGATAAGAACACCATC+AGG | 0.542478 | 7.2:-51013980 | None:intergenic |
GATGACACACTTGTCCCAAA+TGG | 0.543811 | 7.2:+51014022 | MS.gene23169:CDS |
CTAGGAAGAGGACCTGAAGC+AGG | 0.544422 | 7.2:-51015990 | None:intergenic |
AATGGAGCACAAAGGGTACC+AGG | 0.546443 | 7.2:+51012771 | MS.gene23169:CDS |
GTGCCGAGAACCTCAACTCC+TGG | 0.548498 | 7.2:+51019554 | MS.gene23169:CDS |
TCACCATCTGGCAATCCAAA+CGG | 0.548952 | 7.2:-51013786 | None:intergenic |
ACAGGATCTCAGGAAGGATG+TGG | 0.550891 | 7.2:+51013934 | MS.gene23169:intron |
AGATTCTTGGCCTAGATACC+AGG | 0.550935 | 7.2:-51019572 | None:intergenic |
GGCCTAGATACCAGGAGTTG+AGG | 0.554344 | 7.2:-51019564 | None:intergenic |
GTGACATTTAGAATTGGTCC+AGG | 0.557116 | 7.2:-51013412 | None:intergenic |
GCAGGAATGGTGTACAACAT+AGG | 0.561728 | 7.2:+51013577 | MS.gene23169:intron |
GTCCAGTCCTACCATTTGGA+TGG | 0.562113 | 7.2:+51016637 | MS.gene23169:CDS |
CTCATTAATGGCACTTACAG+AGG | 0.565264 | 7.2:+51016577 | MS.gene23169:CDS |
AAAATGGCTGTCCAAGCCCC+AGG | 0.567280 | 7.2:-51019496 | None:intergenic |
TGTTACCAATGCAGAAGTAA+GGG | 0.569094 | 7.2:-51013481 | None:intergenic |
CGCATACGGGTTCACAATGT+CGG | 0.569442 | 7.2:+51015717 | MS.gene23169:CDS |
CAGAGCTTATAAACGGAAAG+TGG | 0.569942 | 7.2:+51016416 | MS.gene23169:CDS |
CTCGTATGTCCAATTCCAGC+CGG | 0.572292 | 7.2:-51013649 | None:intergenic |
TTGCACTACGCTAATTCTCA+GGG | 0.573914 | 7.2:+51015966 | MS.gene23169:CDS |
ATATTCATTCTTAGTTACGA+TGG | 0.577316 | 7.2:+51015857 | MS.gene23169:CDS |
ACCAATTGTCCAATTCCAGC+CGG | 0.577858 | 7.2:+51013630 | MS.gene23169:CDS |
CAAATAATAAATGTGGAACC+TGG | 0.578834 | 7.2:+51014055 | MS.gene23169:CDS |
AACTTACCAAATAATAAATG+TGG | 0.579691 | 7.2:+51014048 | MS.gene23169:CDS |
GTCTCTTTAGGTCTTTCCTG+GGG | 0.581453 | 7.2:+51019480 | MS.gene23169:intron |
TGATCAGAAAGGCTAGGAAG+AGG | 0.584268 | 7.2:-51016002 | None:intergenic |
GTTCCGTTTGGATTGCCAGA+TGG | 0.588154 | 7.2:+51013783 | MS.gene23169:CDS |
AAAGAGCTCAGAATCATCAC+AGG | 0.593204 | 7.2:-51012641 | None:intergenic |
TTTCCGTTTATAAGCTCTGG+AGG | 0.593886 | 7.2:-51016412 | None:intergenic |
CTCTCTGGAAGTTTAGCGAA+GGG | 0.598645 | 7.2:-51013710 | None:intergenic |
CCAGCAAAACTACACAAACA+TGG | 0.601044 | 7.2:+51015815 | MS.gene23169:CDS |
TTATCTTGATCAGAAAGGCT+AGG | 0.602716 | 7.2:-51016008 | None:intergenic |
TGCATATCCATCCAAATGGT+AGG | 0.603792 | 7.2:-51016644 | None:intergenic |
CAGAAGTACTTACAATAAGT+GGG | 0.604253 | 7.2:+51016814 | MS.gene23169:CDS |
AGGGAAAACATATCGCATAC+GGG | 0.607468 | 7.2:+51015704 | MS.gene23169:intron |
TGTGGCTCGCTGCACGACAC+AGG | 0.611173 | 7.2:+51016841 | MS.gene23169:CDS |
GTTGATCTTGGAATTCCTGA+TGG | 0.614204 | 7.2:+51013965 | MS.gene23169:CDS |
AGAGCTTCTGGAGGATATGG+AGG | 0.615958 | 7.2:+51013729 | MS.gene23169:CDS |
ACAAACATGGACATTCATGT+TGG | 0.617151 | 7.2:+51015828 | MS.gene23169:CDS |
GCTCTCTGGAAGTTTAGCGA+AGG | 0.619959 | 7.2:-51013711 | None:intergenic |
GAACTCTTACCTTTGAAGGG+AGG | 0.622552 | 7.2:-51019674 | None:intergenic |
AGGAAAGACACCTGGCAAGA+CGG | 0.625522 | 7.2:+51013597 | MS.gene23169:CDS |
CCATATTTGAAGGAACCTTG+CGG | 0.637958 | 7.2:-51016349 | None:intergenic |
TTACAATAAGTGGGACGGTG+TGG | 0.639857 | 7.2:+51016823 | MS.gene23169:CDS |
GCTGCACGTCCAAACCCGCA+AGG | 0.640936 | 7.2:+51016334 | MS.gene23169:CDS |
TATAGGTGGAATGTGTCTGC+CGG | 0.642960 | 7.2:+51016310 | MS.gene23169:intron |
ATAAAGAAAATGGAGCACAA+AGG | 0.649473 | 7.2:+51012763 | MS.gene23169:CDS |
AGCGTCAAAGGTGTTGAAGG+TGG | 0.651691 | 7.2:-51016469 | None:intergenic |
TGTGAAACAGGATCTCAGGA+AGG | 0.654880 | 7.2:+51013928 | MS.gene23169:intron |
AACTTCCAGAGAGCTTCTGG+AGG | 0.657834 | 7.2:+51013720 | MS.gene23169:CDS |
CATGATGAATTAACAAACCG+AGG | 0.657882 | 7.2:-51015918 | None:intergenic |
GCAAGGTTCCTTCAAATATG+GGG | 0.659359 | 7.2:+51016351 | MS.gene23169:CDS |
AGTTGAGGTTCTCGGCACGA+AGG | 0.671541 | 7.2:-51019549 | None:intergenic |
AGAAAGTTAGATGGACCCGT+AGG | 0.671940 | 7.2:-51012711 | None:intergenic |
TGTCACCACAAACTGGAATG+TGG | 0.674206 | 7.2:+51013429 | MS.gene23169:CDS |
AGTACTTACAATAAGTGGGA+CGG | 0.675300 | 7.2:+51016818 | MS.gene23169:CDS |
CTGGTACACCAAGAGTCACA+AGG | 0.678015 | 7.2:+51013830 | MS.gene23169:CDS |
TTACTTCTAGTGGAGACCGA+AGG | 0.690875 | 7.2:+51015780 | MS.gene23169:CDS |
CCTGATAATGCAATATACTG+TGG | 0.696580 | 7.2:+51019643 | MS.gene23169:CDS |
TACAACATAGGAAAGACACC+TGG | 0.697094 | 7.2:+51013589 | MS.gene23169:CDS |
GCAACATTATAAAATTCTCG+GGG | 0.701564 | 7.2:+51016495 | MS.gene23169:CDS |
CAAATGGTAGGACTGGACAG+TGG | 0.746166 | 7.2:-51016632 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 51012242 | 51019690 | 51012242 | ID=MS.gene23169 |
chr7.2 | mRNA | 51012242 | 51019690 | 51012242 | ID=MS.gene23169.t1;Parent=MS.gene23169 |
chr7.2 | exon | 51012242 | 51012244 | 51012242 | ID=MS.gene23169.t1.exon1;Parent=MS.gene23169.t1 |
chr7.2 | CDS | 51012242 | 51012244 | 51012242 | ID=cds.MS.gene23169.t1;Parent=MS.gene23169.t1 |
chr7.2 | exon | 51012637 | 51012792 | 51012637 | ID=MS.gene23169.t1.exon2;Parent=MS.gene23169.t1 |
chr7.2 | CDS | 51012637 | 51012792 | 51012637 | ID=cds.MS.gene23169.t1;Parent=MS.gene23169.t1 |
chr7.2 | exon | 51013388 | 51013497 | 51013388 | ID=MS.gene23169.t1.exon3;Parent=MS.gene23169.t1 |
chr7.2 | CDS | 51013388 | 51013497 | 51013388 | ID=cds.MS.gene23169.t1;Parent=MS.gene23169.t1 |
chr7.2 | exon | 51013581 | 51013851 | 51013581 | ID=MS.gene23169.t1.exon4;Parent=MS.gene23169.t1 |
chr7.2 | CDS | 51013581 | 51013851 | 51013581 | ID=cds.MS.gene23169.t1;Parent=MS.gene23169.t1 |
chr7.2 | exon | 51013938 | 51014076 | 51013938 | ID=MS.gene23169.t1.exon5;Parent=MS.gene23169.t1 |
chr7.2 | CDS | 51013938 | 51014076 | 51013938 | ID=cds.MS.gene23169.t1;Parent=MS.gene23169.t1 |
chr7.2 | exon | 51015706 | 51016066 | 51015706 | ID=MS.gene23169.t1.exon6;Parent=MS.gene23169.t1 |
chr7.2 | CDS | 51015706 | 51016066 | 51015706 | ID=cds.MS.gene23169.t1;Parent=MS.gene23169.t1 |
chr7.2 | exon | 51016315 | 51016680 | 51016315 | ID=MS.gene23169.t1.exon7;Parent=MS.gene23169.t1 |
chr7.2 | CDS | 51016315 | 51016680 | 51016315 | ID=cds.MS.gene23169.t1;Parent=MS.gene23169.t1 |
chr7.2 | exon | 51016784 | 51016862 | 51016784 | ID=MS.gene23169.t1.exon8;Parent=MS.gene23169.t1 |
chr7.2 | CDS | 51016784 | 51016862 | 51016784 | ID=cds.MS.gene23169.t1;Parent=MS.gene23169.t1 |
chr7.2 | exon | 51019490 | 51019690 | 51019490 | ID=MS.gene23169.t1.exon9;Parent=MS.gene23169.t1 |
chr7.2 | CDS | 51019490 | 51019690 | 51019490 | ID=cds.MS.gene23169.t1;Parent=MS.gene23169.t1 |
Gene Sequence |
Protein sequence |