Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23362.t1 | XP_003607085.1 | 94.7 | 569 | 28 | 2 | 1 | 567 | 1 | 569 | 7.00E-305 | 1055.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23362.t1 | Q9SI61 | 76.2 | 572 | 111 | 7 | 1 | 553 | 1 | 566 | 9.4e-242 | 837.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23362.t1 | G7JL07 | 94.7 | 569 | 28 | 2 | 1 | 567 | 1 | 569 | 5.0e-305 | 1055.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074158 | MS.gene23362 | PPI |
| MS.gene33554 | MS.gene23362 | PPI |
| MS.gene47076 | MS.gene23362 | PPI |
| MS.gene55438 | MS.gene23362 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23362.t1 | MTR_4g072110 | 98.067 | 569 | 9 | 2 | 1 | 567 | 1 | 569 | 0.0 | 1134 |
| MS.gene23362.t1 | MTR_3g117590 | 77.228 | 404 | 61 | 2 | 128 | 531 | 27 | 399 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23362.t1 | AT4G34740 | 81.944 | 504 | 81 | 2 | 51 | 553 | 67 | 561 | 0.0 | 847 |
| MS.gene23362.t1 | AT2G16570 | 82.863 | 496 | 83 | 2 | 60 | 553 | 71 | 566 | 0.0 | 845 |
| MS.gene23362.t1 | AT4G38880 | 70.942 | 499 | 135 | 5 | 31 | 526 | 34 | 525 | 0.0 | 713 |
Find 151 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATAGCTGTTCCTGATTC+TGG | 0.178498 | 4.4:+37009305 | MS.gene23362:CDS |
| AGAGAAGGGAGAGAGGGTTT+TGG | 0.224365 | 4.4:-37008327 | None:intergenic |
| GGATGAGTGTTGAAGAAATA+AGG | 0.235614 | 4.4:+37009669 | MS.gene23362:CDS |
| GGGTTTAGGCCTTTGGTTAT+GGG | 0.237862 | 4.4:+37008999 | MS.gene23362:CDS |
| TGGGTTTAGGCCTTTGGTTA+TGG | 0.266896 | 4.4:+37008998 | MS.gene23362:CDS |
| GAGAGGATGATGTCGGAAAT+TGG | 0.268968 | 4.4:-37008393 | None:intergenic |
| ATTATTGGTTCTTGTTACTA+TGG | 0.269970 | 4.4:+37009608 | MS.gene23362:CDS |
| ATTGCAAGTCCACCAATTAT+TGG | 0.272119 | 4.4:+37009593 | MS.gene23362:CDS |
| TGACGATCCCGGCGCCTTCT+TGG | 0.277743 | 4.4:-37008557 | None:intergenic |
| GTGCTGTGCTTGAAGGTAAA+AGG | 0.278979 | 4.4:+37009474 | MS.gene23362:CDS |
| TCAACAATTCTCAAAATAAA+AGG | 0.280388 | 4.4:-37008897 | None:intergenic |
| TGAGGGATCCGTTTGGGTTT+AGG | 0.298862 | 4.4:+37008985 | MS.gene23362:CDS |
| TCCGTTTGGGTTTAGGCCTT+TGG | 0.309909 | 4.4:+37008992 | MS.gene23362:CDS |
| GTGATTGTGGTTGATAATAA+TGG | 0.317436 | 4.4:+37009116 | MS.gene23362:CDS |
| TGCGGAGTTGTTGGAATCTA+TGG | 0.322709 | 4.4:+37008477 | MS.gene23362:CDS |
| AGAGCTAAGCTTGAAGATAA+AGG | 0.329947 | 4.4:+37008807 | MS.gene23362:CDS |
| CTCTTAACCTTGAGCTCTCT+TGG | 0.333802 | 4.4:-37009809 | None:intergenic |
| GAGAAGGGAGGGTTTGGTTA+GGG | 0.337767 | 4.4:-37008268 | None:intergenic |
| GGGAGGGAGAAGGGAGGGTT+TGG | 0.340461 | 4.4:-37008274 | None:intergenic |
| TGATGGTTTGAATGGGAGTT+TGG | 0.341680 | 4.4:+37009850 | MS.gene23362:CDS |
| TTGAGCCGTCTCAGAAGATT+AGG | 0.349524 | 4.4:+37009417 | MS.gene23362:CDS |
| TTGAGCTCTCTTGGTTCAAC+AGG | 0.352244 | 4.4:-37009800 | None:intergenic |
| TGGCCGATGGCTAAGCTTCC+GGG | 0.363060 | 4.4:-37008663 | None:intergenic |
| CGCCTTCTTGGCCGCGGTGT+TGG | 0.365653 | 4.4:-37008545 | None:intergenic |
| TTTGTTGCTGGGTACCGTTT+TGG | 0.372205 | 4.4:+37008735 | MS.gene23362:CDS |
| CCGGTCCGTGCTGTGCTTGA+AGG | 0.375757 | 4.4:+37009467 | MS.gene23362:CDS |
| AGAGGATGATGTCGGAAATT+GGG | 0.376272 | 4.4:-37008392 | None:intergenic |
| GTTGTTGGGAGGGAGAAGGG+AGG | 0.382000 | 4.4:-37008280 | None:intergenic |
| GTTGGTGACTTTGTTGATGA+TGG | 0.383115 | 4.4:+37009833 | MS.gene23362:CDS |
| TAGTAACAAGAACCAATAAT+TGG | 0.384192 | 4.4:-37009605 | None:intergenic |
| CAGAGGAGTTGATATCTAAT+AGG | 0.384260 | 4.4:+37009648 | MS.gene23362:CDS |
| GATTCAATCGCTCTGTTTGA+TGG | 0.385949 | 4.4:+37009139 | MS.gene23362:CDS |
| GGAGAAGGGAGGGTTTGGTT+AGG | 0.391252 | 4.4:-37008269 | None:intergenic |
| CTAATCAACCCTTGTTGAAA+AGG | 0.394989 | 4.4:-37009368 | None:intergenic |
| GTAGCAGTATTAACCTCTTT+CGG | 0.395870 | 4.4:-37009911 | None:intergenic |
| GAAGATTGTGAGGTTGCTTA+AGG | 0.403149 | 4.4:+37009541 | MS.gene23362:CDS |
| CGTGAAGAGTGCGGAGTTGT+TGG | 0.409849 | 4.4:+37008468 | MS.gene23362:CDS |
| TTTGTTGATGATGGTTTGAA+TGG | 0.415105 | 4.4:+37009842 | MS.gene23362:CDS |
| GTTGTTGTTGGGAGGGAGAA+GGG | 0.418316 | 4.4:-37008283 | None:intergenic |
| ATGGCCGATGGCTAAGCTTC+CGG | 0.422840 | 4.4:-37008664 | None:intergenic |
| CAAGAGAGCTCAAGGTTAAG+AGG | 0.423035 | 4.4:+37009810 | MS.gene23362:CDS |
| GTCGGAGAGAGAAGGGAGAG+AGG | 0.429052 | 4.4:-37008334 | None:intergenic |
| GATGAGTGTTGAAGAAATAA+GGG | 0.433460 | 4.4:+37009670 | MS.gene23362:CDS |
| GCAGCCACAACACCAGAATC+AGG | 0.436019 | 4.4:-37009317 | None:intergenic |
| TTGAAGAAGCGGTTGTTGTT+GGG | 0.436751 | 4.4:-37008294 | None:intergenic |
| TTGCTGTGAGGGATCCGTTT+GGG | 0.437418 | 4.4:+37008979 | MS.gene23362:CDS |
| CAATAGCTTGCATAGTATGC+TGG | 0.442432 | 4.4:+37009730 | MS.gene23362:CDS |
| TTTGGAGGAAGTGAGGAAAA+GGG | 0.443047 | 4.4:-37008367 | None:intergenic |
| GGTTGTTGTTGGGAGGGAGA+AGG | 0.446068 | 4.4:-37008284 | None:intergenic |
| GTTGAAGAAGCGGTTGTTGT+TGG | 0.450569 | 4.4:-37008295 | None:intergenic |
| GGAACAAATTGATGGTGGTT+GGG | 0.451957 | 4.4:+37009871 | MS.gene23362:CDS |
| TTGTTGGGAGGGAGAAGGGA+GGG | 0.453317 | 4.4:-37008279 | None:intergenic |
| TGATTGTGGTTGATAATAAT+GGG | 0.454958 | 4.4:+37009117 | MS.gene23362:CDS |
| TCTGGTGTTGTGGCTGCGCT+TGG | 0.458740 | 4.4:+37009323 | MS.gene23362:CDS |
| TATGAATCACGTAGGCGATT+TGG | 0.462036 | 4.4:+37009242 | MS.gene23362:CDS |
| ATACTATGCAAGCTATTGAT+TGG | 0.463311 | 4.4:-37009725 | None:intergenic |
| ATCACAACATCACAATCAAC+AGG | 0.467162 | 4.4:-37009287 | None:intergenic |
| TTTGTTATGCTTGTTTCTCT+GGG | 0.472388 | 4.4:+37009771 | MS.gene23362:CDS |
| CTTGGTTATGCTGCGAAAGC+CGG | 0.474447 | 4.4:+37009341 | MS.gene23362:CDS |
| GGGAGTTTGGAACAAATTGA+TGG | 0.485386 | 4.4:+37009863 | MS.gene23362:CDS |
| CATGTTCGTTATTCTACTGC+TGG | 0.487415 | 4.4:+37008684 | MS.gene23362:CDS |
| TTGAAGAACGTTGTTGTTAA+CGG | 0.487917 | 4.4:-37008580 | None:intergenic |
| GTTGCTGTGAGGGATCCGTT+TGG | 0.488507 | 4.4:+37008978 | MS.gene23362:CDS |
| GTTGTTAACGGTGACGATCC+CGG | 0.488654 | 4.4:-37008568 | None:intergenic |
| ACCGCGGCCAAGAAGGCGCC+GGG | 0.491418 | 4.4:+37008550 | MS.gene23362:CDS |
| GGAAAACATCCTCGTCTTGT+GGG | 0.492354 | 4.4:-37008428 | None:intergenic |
| CTCCAACACCGCGGCCAAGA+AGG | 0.497456 | 4.4:+37008543 | MS.gene23362:CDS |
| CTTCAATCCATCACCGGTGT+TGG | 0.497665 | 4.4:+37008597 | MS.gene23362:CDS |
| GGTTTAGGCCTTTGGTTATG+GGG | 0.500914 | 4.4:+37009000 | MS.gene23362:CDS |
| TGAGCCGTCTCAGAAGATTA+GGG | 0.501845 | 4.4:+37009418 | MS.gene23362:CDS |
| GACAAGACCAACACCGGTGA+TGG | 0.504668 | 4.4:-37008604 | None:intergenic |
| TGCTCAAAGATACACTGCTT+CGG | 0.506723 | 4.4:-37009173 | None:intergenic |
| TGGAACAAATTGATGGTGGT+TGG | 0.506884 | 4.4:+37009870 | MS.gene23362:CDS |
| GAGCTCAAGGTTAAGAGGGT+TGG | 0.509152 | 4.4:+37009815 | MS.gene23362:CDS |
| TTTGTTGGAGAGGATGATGT+CGG | 0.510776 | 4.4:-37008400 | None:intergenic |
| TTCTATTGTGTTTGTTACCG+AGG | 0.517084 | 4.4:+37008947 | MS.gene23362:CDS |
| TTGGAGGAAGTGAGGAAAAG+GGG | 0.517107 | 4.4:-37008366 | None:intergenic |
| AAAGAGGTTAATACTGCTAC+TGG | 0.518771 | 4.4:+37009914 | MS.gene23362:CDS |
| CACCGCGGCCAAGAAGGCGC+CGG | 0.518932 | 4.4:+37008549 | MS.gene23362:CDS |
| CACGAGGCTTGTCGTCGTTG+AGG | 0.520175 | 4.4:-37008449 | None:intergenic |
| GTGAGGTTGCTTAAGGAAGC+TGG | 0.520822 | 4.4:+37009548 | MS.gene23362:CDS |
| TTTCGGGTGTCGGAGAGAGA+AGG | 0.521313 | 4.4:-37008342 | None:intergenic |
| AAACGGTACCCAGCAACAAA+AGG | 0.521430 | 4.4:-37008732 | None:intergenic |
| TCGGAGAGAGAAGGGAGAGA+GGG | 0.522057 | 4.4:-37008333 | None:intergenic |
| TCTCAGAAGATTAGGGACTT+TGG | 0.526450 | 4.4:+37009425 | MS.gene23362:CDS |
| AGGAAAACATCCTCGTCTTG+TGG | 0.526596 | 4.4:-37008429 | None:intergenic |
| TTGTTGATGATGGTTTGAAT+GGG | 0.530340 | 4.4:+37009843 | MS.gene23362:CDS |
| GGATAAGCTTGTTGCTGTGA+GGG | 0.531703 | 4.4:+37008968 | MS.gene23362:CDS |
| TCCCGGCGCCTTCTTGGCCG+CGG | 0.532251 | 4.4:-37008551 | None:intergenic |
| AAGAAGCGGTTGTTGTTGGG+AGG | 0.533885 | 4.4:-37008291 | None:intergenic |
| GGAGGGCTAAGTAGCAGAGA+CGG | 0.535500 | 4.4:-37008515 | None:intergenic |
| TGTTCCTGATTCTGGTGTTG+TGG | 0.536036 | 4.4:+37009313 | MS.gene23362:CDS |
| AATAGCTTGCATAGTATGCT+GGG | 0.536251 | 4.4:+37009731 | MS.gene23362:CDS |
| ACAAAACTCGATCAGTTACC+CGG | 0.539167 | 4.4:+37008645 | MS.gene23362:CDS |
| TTTCCCTGGTGAGGTGATTG+TGG | 0.539786 | 4.4:+37009103 | MS.gene23362:CDS |
| TGGTTCTTGTTACTATGGTG+TGG | 0.539936 | 4.4:+37009613 | MS.gene23362:CDS |
| GATATCAACTCCTCTGAGCT+AGG | 0.540111 | 4.4:-37009641 | None:intergenic |
| AAGATACACTGCTTCGGCTG+CGG | 0.540981 | 4.4:-37009167 | None:intergenic |
| AGCTAACAGAAATCCGAAAG+AGG | 0.542756 | 4.4:+37009898 | MS.gene23362:CDS |
| AGAAGCGGTTGTTGTTGGGA+GGG | 0.543704 | 4.4:-37008290 | None:intergenic |
| GAGGGCTAAGTAGCAGAGAC+GGG | 0.544400 | 4.4:-37008514 | None:intergenic |
| TCAACCACAATCACCTCACC+AGG | 0.547964 | 4.4:-37009107 | None:intergenic |
| GGCCGCGGTGTTGGAGAGCG+TGG | 0.550054 | 4.4:-37008536 | None:intergenic |
| ACCAAAGGCCTAAACCCAAA+CGG | 0.556825 | 4.4:-37008993 | None:intergenic |
| GATTGAAGCTACTTATGAGA+GGG | 0.557263 | 4.4:+37009076 | MS.gene23362:CDS |
| TGCTGTGCTTGAAGGTAAAA+GGG | 0.558567 | 4.4:+37009475 | MS.gene23362:CDS |
| TAACAAGAACCAATAATTGG+TGG | 0.560555 | 4.4:-37009602 | None:intergenic |
| GCGGTGTTGGAGAGCGTGGA+GGG | 0.560878 | 4.4:-37008532 | None:intergenic |
| CCCTTGTTGAAAAGGAACAC+CGG | 0.561790 | 4.4:-37009360 | None:intergenic |
| TTCGGGTGTCGGAGAGAGAA+GGG | 0.564516 | 4.4:-37008341 | None:intergenic |
| TTAGGCCTTTGGTTATGGGG+AGG | 0.567193 | 4.4:+37009003 | MS.gene23362:CDS |
| CACAGCAACAAGCTTATCCT+CGG | 0.568347 | 4.4:-37008964 | None:intergenic |
| GATGCATGTGAGAAGCTTGA+AGG | 0.569398 | 4.4:+37008918 | MS.gene23362:CDS |
| CAACACCCACAGAACCAAAA+CGG | 0.569611 | 4.4:-37008749 | None:intergenic |
| TTGATTAGGTCACACTATGT+AGG | 0.570960 | 4.4:+37009383 | MS.gene23362:CDS |
| GGAGGTTTGTGTTGAAGAAG+CGG | 0.572584 | 4.4:-37008305 | None:intergenic |
| CCTTCAAGCACAGCACGGAC+CGG | 0.573470 | 4.4:-37009467 | None:intergenic |
| TGTGAAGTTGAAGCTTTCAC+CGG | 0.573769 | 4.4:+37009448 | MS.gene23362:CDS |
| AAGAGAGCTCAAGGTTAAGA+GGG | 0.575571 | 4.4:+37009811 | MS.gene23362:CDS |
| TTGTTGATGATTCAATTGTG+AGG | 0.577918 | 4.4:+37009504 | MS.gene23362:CDS |
| AACGTTCTTCAATCCATCAC+CGG | 0.584401 | 4.4:+37008591 | MS.gene23362:CDS |
| TGTTGATGATTCAATTGTGA+GGG | 0.586634 | 4.4:+37009505 | MS.gene23362:CDS |
| TGAAGCTACTTATGAGAGGG+AGG | 0.587839 | 4.4:+37009079 | MS.gene23362:CDS |
| TGATTGAAGCTACTTATGAG+AGG | 0.590354 | 4.4:+37009075 | MS.gene23362:CDS |
| GTTATGGGGAGGAGAAGTAA+TGG | 0.595209 | 4.4:+37009014 | MS.gene23362:CDS |
| TGTTGAACCAAGAGAGCTCA+AGG | 0.596313 | 4.4:+37009802 | MS.gene23362:CDS |
| AAACATCCTCGTCTTGTGGG+TGG | 0.606526 | 4.4:-37008425 | None:intergenic |
| ATCGGAGACAAGACCAACAC+CGG | 0.609069 | 4.4:-37008610 | None:intergenic |
| CGCGGTGTTGGAGAGCGTGG+AGG | 0.613758 | 4.4:-37008533 | None:intergenic |
| CAGCAGTAGAATAACGAACA+TGG | 0.626295 | 4.4:-37008683 | None:intergenic |
| AGGATAAGCTTGTTGCTGTG+AGG | 0.627037 | 4.4:+37008967 | MS.gene23362:CDS |
| CAACATCGTCGAAGATTGTG+AGG | 0.634583 | 4.4:+37009531 | MS.gene23362:CDS |
| TCTGTGGGTGTTGCTCATAA+CGG | 0.634744 | 4.4:+37008759 | MS.gene23362:CDS |
| AGAAGAGAGAGTTTGAGCTG+CGG | 0.634768 | 4.4:-37008244 | None:intergenic |
| CTTCTCCTCCCCATAACCAA+AGG | 0.635089 | 4.4:-37009008 | None:intergenic |
| AAGTCCCTAATCTTCTGAGA+CGG | 0.638630 | 4.4:-37009422 | None:intergenic |
| ATCACGTAGGCGATTTGGTG+AGG | 0.640246 | 4.4:+37009247 | MS.gene23362:CDS |
| TTAGGTCACACTATGTAGGA+AGG | 0.643224 | 4.4:+37009387 | MS.gene23362:CDS |
| TGAGCTCTCTTGGTTCAACA+GGG | 0.647432 | 4.4:-37009799 | None:intergenic |
| AGTTTGGAACAAATTGATGG+TGG | 0.649376 | 4.4:+37009866 | MS.gene23362:CDS |
| ACAACTCCGCACTCTTCACG+AGG | 0.650501 | 4.4:-37008465 | None:intergenic |
| TTACCCGGAAGCTTAGCCAT+CGG | 0.652209 | 4.4:+37008660 | MS.gene23362:CDS |
| GACAAGCCTCGTGAAGAGTG+CGG | 0.664911 | 4.4:+37008459 | MS.gene23362:CDS |
| AGAATAACGAACATGGCCGA+TGG | 0.666671 | 4.4:-37008676 | None:intergenic |
| GTGCAAAAGAAGTTCACATG+AGG | 0.670165 | 4.4:+37009570 | MS.gene23362:CDS |
| GTTGATGATTCAATTGTGAG+GGG | 0.670311 | 4.4:+37009506 | MS.gene23362:CDS |
| GGCTAAGTAGCAGAGACGGG+AGG | 0.683072 | 4.4:-37008511 | None:intergenic |
| TGTGGATACACCTAGCTCAG+AGG | 0.694828 | 4.4:+37009631 | MS.gene23362:CDS |
| GGTCTGTGTATGAATCACGT+AGG | 0.739465 | 4.4:+37009234 | MS.gene23362:CDS |
| CAACCACAATCACCTCACCA+GGG | 0.745503 | 4.4:-37009106 | None:intergenic |
| CTCCACGCTCTCCAACACCG+CGG | 0.815634 | 4.4:+37008534 | MS.gene23362:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAGCATAACAAAAATT+AGG | - | chr4.4:37009767-37009786 | None:intergenic | 20.0% |
| !! | TCAACAATTCTCAAAATAAA+AGG | - | chr4.4:37008900-37008919 | None:intergenic | 20.0% |
| ! | TAGTAACAAGAACCAATAAT+TGG | - | chr4.4:37009608-37009627 | None:intergenic | 25.0% |
| !! | GAAGAAATAAGGGATTTTAT+TGG | + | chr4.4:37009680-37009699 | MS.gene23362:CDS | 25.0% |
| !!! | ATTATTGGTTCTTGTTACTA+TGG | + | chr4.4:37009608-37009627 | MS.gene23362:CDS | 25.0% |
| !!! | TGATTGTGGTTGATAATAAT+GGG | + | chr4.4:37009117-37009136 | MS.gene23362:CDS | 25.0% |
| !!! | TTTTGTTTCGTTGAATACAT+CGG | - | chr4.4:37008631-37008650 | None:intergenic | 25.0% |
| ATACTATGCAAGCTATTGAT+TGG | - | chr4.4:37009728-37009747 | None:intergenic | 30.0% | |
| CTACCAAAAACAACAGAATT+AGG | - | chr4.4:37009215-37009234 | None:intergenic | 30.0% | |
| TAACAAGAACCAATAATTGG+TGG | - | chr4.4:37009605-37009624 | None:intergenic | 30.0% | |
| ! | TTGAAGAACGTTGTTGTTAA+CGG | - | chr4.4:37008583-37008602 | None:intergenic | 30.0% |
| ! | TTTGTTATGCTTGTTTCTCT+GGG | + | chr4.4:37009771-37009790 | MS.gene23362:CDS | 30.0% |
| !! | GATGAGTGTTGAAGAAATAA+GGG | + | chr4.4:37009670-37009689 | MS.gene23362:CDS | 30.0% |
| !! | GTGATTGTGGTTGATAATAA+TGG | + | chr4.4:37009116-37009135 | MS.gene23362:CDS | 30.0% |
| !! | TGTTGATGATTCAATTGTGA+GGG | + | chr4.4:37009505-37009524 | MS.gene23362:CDS | 30.0% |
| !! | TTGTTGATGATGGTTTGAAT+GGG | + | chr4.4:37009843-37009862 | MS.gene23362:CDS | 30.0% |
| !! | TTGTTGATGATTCAATTGTG+AGG | + | chr4.4:37009504-37009523 | MS.gene23362:CDS | 30.0% |
| !! | TTTGTTGATGATGGTTTGAA+TGG | + | chr4.4:37009842-37009861 | MS.gene23362:CDS | 30.0% |
| !! | TTTTGTTATGCTTGTTTCTC+TGG | + | chr4.4:37009770-37009789 | MS.gene23362:CDS | 30.0% |
| !!! | CTAATTCTGTTGTTTTTGGT+AGG | + | chr4.4:37009213-37009232 | MS.gene23362:CDS | 30.0% |
| !!! | TTGCCTAATTCTGTTGTTTT+TGG | + | chr4.4:37009209-37009228 | MS.gene23362:CDS | 30.0% |
| AAAGAGGTTAATACTGCTAC+TGG | + | chr4.4:37009914-37009933 | MS.gene23362:CDS | 35.0% | |
| AGAGCTAAGCTTGAAGATAA+AGG | + | chr4.4:37008807-37008826 | MS.gene23362:CDS | 35.0% | |
| ATCACAACATCACAATCAAC+AGG | - | chr4.4:37009290-37009309 | None:intergenic | 35.0% | |
| ATTGCAAGTCCACCAATTAT+TGG | + | chr4.4:37009593-37009612 | MS.gene23362:CDS | 35.0% | |
| CTAATCAACCCTTGTTGAAA+AGG | - | chr4.4:37009371-37009390 | None:intergenic | 35.0% | |
| GATTGAAGCTACTTATGAGA+GGG | + | chr4.4:37009076-37009095 | MS.gene23362:CDS | 35.0% | |
| GTAGCAGTATTAACCTCTTT+CGG | - | chr4.4:37009914-37009933 | None:intergenic | 35.0% | |
| TGATTGAAGCTACTTATGAG+AGG | + | chr4.4:37009075-37009094 | MS.gene23362:CDS | 35.0% | |
| TTGATTAGGTCACACTATGT+AGG | + | chr4.4:37009383-37009402 | MS.gene23362:CDS | 35.0% | |
| ! | AATAGCTTGCATAGTATGCT+GGG | + | chr4.4:37009731-37009750 | MS.gene23362:CDS | 35.0% |
| ! | AATGTTCAACCTTTTGTTGC+TGG | + | chr4.4:37008723-37008742 | MS.gene23362:CDS | 35.0% |
| ! | AGTTTGGAACAAATTGATGG+TGG | + | chr4.4:37009866-37009885 | MS.gene23362:CDS | 35.0% |
| ! | ATGTTCAACCTTTTGTTGCT+GGG | + | chr4.4:37008724-37008743 | MS.gene23362:CDS | 35.0% |
| ! | TTCTATTGTGTTTGTTACCG+AGG | + | chr4.4:37008947-37008966 | MS.gene23362:CDS | 35.0% |
| !! | CAGAGGAGTTGATATCTAAT+AGG | + | chr4.4:37009648-37009667 | MS.gene23362:CDS | 35.0% |
| !! | CTTTTCAACAAGGGTTGATT+AGG | + | chr4.4:37009369-37009388 | MS.gene23362:CDS | 35.0% |
| !! | GGATGAGTGTTGAAGAAATA+AGG | + | chr4.4:37009669-37009688 | MS.gene23362:CDS | 35.0% |
| !! | GTTGATGATTCAATTGTGAG+GGG | + | chr4.4:37009506-37009525 | MS.gene23362:CDS | 35.0% |
| AACGTTCTTCAATCCATCAC+CGG | + | chr4.4:37008591-37008610 | MS.gene23362:CDS | 40.0% | |
| AAGAGAGCTCAAGGTTAAGA+GGG | + | chr4.4:37009811-37009830 | MS.gene23362:CDS | 40.0% | |
| ACAAAACTCGATCAGTTACC+CGG | + | chr4.4:37008645-37008664 | MS.gene23362:CDS | 40.0% | |
| AGAGGATGATGTCGGAAATT+GGG | - | chr4.4:37008395-37008414 | None:intergenic | 40.0% | |
| AGCTAACAGAAATCCGAAAG+AGG | + | chr4.4:37009898-37009917 | MS.gene23362:CDS | 40.0% | |
| CAGCAGTAGAATAACGAACA+TGG | - | chr4.4:37008686-37008705 | None:intergenic | 40.0% | |
| CATGTTCGTTATTCTACTGC+TGG | + | chr4.4:37008684-37008703 | MS.gene23362:CDS | 40.0% | |
| GAAGATTGTGAGGTTGCTTA+AGG | + | chr4.4:37009541-37009560 | MS.gene23362:CDS | 40.0% | |
| GATTCAATCGCTCTGTTTGA+TGG | + | chr4.4:37009139-37009158 | MS.gene23362:CDS | 40.0% | |
| GTGCAAAAGAAGTTCACATG+AGG | + | chr4.4:37009570-37009589 | MS.gene23362:CDS | 40.0% | |
| TATGAATCACGTAGGCGATT+TGG | + | chr4.4:37009242-37009261 | MS.gene23362:CDS | 40.0% | |
| TCTCAGAAGATTAGGGACTT+TGG | + | chr4.4:37009425-37009444 | MS.gene23362:CDS | 40.0% | |
| TGATGGTTTGAATGGGAGTT+TGG | + | chr4.4:37009850-37009869 | MS.gene23362:CDS | 40.0% | |
| TGCTCAAAGATACACTGCTT+CGG | - | chr4.4:37009176-37009195 | None:intergenic | 40.0% | |
| TGCTGTGCTTGAAGGTAAAA+GGG | + | chr4.4:37009475-37009494 | MS.gene23362:CDS | 40.0% | |
| TGGTTCTTGTTACTATGGTG+TGG | + | chr4.4:37009613-37009632 | MS.gene23362:CDS | 40.0% | |
| TGTGAAGTTGAAGCTTTCAC+CGG | + | chr4.4:37009448-37009467 | MS.gene23362:CDS | 40.0% | |
| TTAGGTCACACTATGTAGGA+AGG | + | chr4.4:37009387-37009406 | MS.gene23362:CDS | 40.0% | |
| TTTGGAGGAAGTGAGGAAAA+GGG | - | chr4.4:37008370-37008389 | None:intergenic | 40.0% | |
| TTTGTTGGAGAGGATGATGT+CGG | - | chr4.4:37008403-37008422 | None:intergenic | 40.0% | |
| ! | AAGTCCCTAATCTTCTGAGA+CGG | - | chr4.4:37009425-37009444 | None:intergenic | 40.0% |
| ! | AAGTGAGGAAAAGGGGTTTT+CGG | - | chr4.4:37008362-37008381 | None:intergenic | 40.0% |
| ! | CAATAGCTTGCATAGTATGC+TGG | + | chr4.4:37009730-37009749 | MS.gene23362:CDS | 40.0% |
| ! | GATGTCGGAAATTGGGTTTT+TGG | - | chr4.4:37008388-37008407 | None:intergenic | 40.0% |
| ! | GGGAGTTTGGAACAAATTGA+TGG | + | chr4.4:37009863-37009882 | MS.gene23362:CDS | 40.0% |
| ! | TTGAAGAAGCGGTTGTTGTT+GGG | - | chr4.4:37008297-37008316 | None:intergenic | 40.0% |
| ! | TTTTACCTTCAAGCACAGCA+CGG | - | chr4.4:37009475-37009494 | None:intergenic | 40.0% |
| !! | GGAACAAATTGATGGTGGTT+GGG | + | chr4.4:37009871-37009890 | MS.gene23362:CDS | 40.0% |
| !! | GTTGGTGACTTTGTTGATGA+TGG | + | chr4.4:37009833-37009852 | MS.gene23362:CDS | 40.0% |
| !! | TGGAACAAATTGATGGTGGT+TGG | + | chr4.4:37009870-37009889 | MS.gene23362:CDS | 40.0% |
| !! | TTTTGGAGGAAGTGAGGAAA+AGG | - | chr4.4:37008371-37008390 | None:intergenic | 40.0% |
| AAACGGTACCCAGCAACAAA+AGG | - | chr4.4:37008735-37008754 | None:intergenic | 45.0% | |
| ACCAAAGGCCTAAACCCAAA+CGG | - | chr4.4:37008996-37009015 | None:intergenic | 45.0% | |
| AGAAGAGAGAGTTTGAGCTG+CGG | - | chr4.4:37008247-37008266 | None:intergenic | 45.0% | |
| AGAATAACGAACATGGCCGA+TGG | - | chr4.4:37008679-37008698 | None:intergenic | 45.0% | |
| AGGAAAACATCCTCGTCTTG+TGG | - | chr4.4:37008432-37008451 | None:intergenic | 45.0% | |
| CAACACCCACAGAACCAAAA+CGG | - | chr4.4:37008752-37008771 | None:intergenic | 45.0% | |
| CAACATCGTCGAAGATTGTG+AGG | + | chr4.4:37009531-37009550 | MS.gene23362:CDS | 45.0% | |
| CAAGAGAGCTCAAGGTTAAG+AGG | + | chr4.4:37009810-37009829 | MS.gene23362:CDS | 45.0% | |
| CACAGCAACAAGCTTATCCT+CGG | - | chr4.4:37008967-37008986 | None:intergenic | 45.0% | |
| CCCTTGTTGAAAAGGAACAC+CGG | - | chr4.4:37009363-37009382 | None:intergenic | 45.0% | |
| CTCTTAACCTTGAGCTCTCT+TGG | - | chr4.4:37009812-37009831 | None:intergenic | 45.0% | |
| GAGAGGATGATGTCGGAAAT+TGG | - | chr4.4:37008396-37008415 | None:intergenic | 45.0% | |
| GATATCAACTCCTCTGAGCT+AGG | - | chr4.4:37009644-37009663 | None:intergenic | 45.0% | |
| GATGCATGTGAGAAGCTTGA+AGG | + | chr4.4:37008918-37008937 | MS.gene23362:CDS | 45.0% | |
| GGAAAACATCCTCGTCTTGT+GGG | - | chr4.4:37008431-37008450 | None:intergenic | 45.0% | |
| GGAGGTTTGTGTTGAAGAAG+CGG | - | chr4.4:37008308-37008327 | None:intergenic | 45.0% | |
| GGGTTTAGGCCTTTGGTTAT+GGG | + | chr4.4:37008999-37009018 | MS.gene23362:CDS | 45.0% | |
| GGTCTGTGTATGAATCACGT+AGG | + | chr4.4:37009234-37009253 | MS.gene23362:CDS | 45.0% | |
| GGTTTAGGCCTTTGGTTATG+GGG | + | chr4.4:37009000-37009019 | MS.gene23362:CDS | 45.0% | |
| GTGATAGCTGTTCCTGATTC+TGG | + | chr4.4:37009305-37009324 | MS.gene23362:CDS | 45.0% | |
| GTGCTGTGCTTGAAGGTAAA+AGG | + | chr4.4:37009474-37009493 | MS.gene23362:CDS | 45.0% | |
| GTTATGGGGAGGAGAAGTAA+TGG | + | chr4.4:37009014-37009033 | MS.gene23362:CDS | 45.0% | |
| GTTGAAGAAGCGGTTGTTGT+TGG | - | chr4.4:37008298-37008317 | None:intergenic | 45.0% | |
| TGAAGCTACTTATGAGAGGG+AGG | + | chr4.4:37009079-37009098 | MS.gene23362:CDS | 45.0% | |
| TGAGCCGTCTCAGAAGATTA+GGG | + | chr4.4:37009418-37009437 | MS.gene23362:CDS | 45.0% | |
| TGAGCTCTCTTGGTTCAACA+GGG | - | chr4.4:37009802-37009821 | None:intergenic | 45.0% | |
| TGCGGAGTTGTTGGAATCTA+TGG | + | chr4.4:37008477-37008496 | MS.gene23362:CDS | 45.0% | |
| TGGGTTTAGGCCTTTGGTTA+TGG | + | chr4.4:37008998-37009017 | MS.gene23362:CDS | 45.0% | |
| TGTTGAACCAAGAGAGCTCA+AGG | + | chr4.4:37009802-37009821 | MS.gene23362:CDS | 45.0% | |
| TTGAGCCGTCTCAGAAGATT+AGG | + | chr4.4:37009417-37009436 | MS.gene23362:CDS | 45.0% | |
| TTGAGCTCTCTTGGTTCAAC+AGG | - | chr4.4:37009803-37009822 | None:intergenic | 45.0% | |
| TTGGAGGAAGTGAGGAAAAG+GGG | - | chr4.4:37008369-37008388 | None:intergenic | 45.0% | |
| ! | AGTGAGGAAAAGGGGTTTTC+GGG | - | chr4.4:37008361-37008380 | None:intergenic | 45.0% |
| ! | CCGGTGTTCCTTTTCAACAA+GGG | + | chr4.4:37009360-37009379 | MS.gene23362:CDS | 45.0% |
| ! | GTCTTGTGGGTGGTTTTTGT+TGG | - | chr4.4:37008418-37008437 | None:intergenic | 45.0% |
| ! | TGTTCCTGATTCTGGTGTTG+TGG | + | chr4.4:37009313-37009332 | MS.gene23362:CDS | 45.0% |
| !! | AGGATAAGCTTGTTGCTGTG+AGG | + | chr4.4:37008967-37008986 | MS.gene23362:CDS | 45.0% |
| !! | GGATAAGCTTGTTGCTGTGA+GGG | + | chr4.4:37008968-37008987 | MS.gene23362:CDS | 45.0% |
| !! | GTCGGAAATTGGGTTTTTGG+AGG | - | chr4.4:37008385-37008404 | None:intergenic | 45.0% |
| !! | TCTGTGGGTGTTGCTCATAA+CGG | + | chr4.4:37008759-37008778 | MS.gene23362:CDS | 45.0% |
| !! | TTGGGTTTTTGGAGGAAGTG+AGG | - | chr4.4:37008377-37008396 | None:intergenic | 45.0% |
| !! | TTTGTTGCTGGGTACCGTTT+TGG | + | chr4.4:37008735-37008754 | MS.gene23362:CDS | 45.0% |
| AAACATCCTCGTCTTGTGGG+TGG | - | chr4.4:37008428-37008447 | None:intergenic | 50.0% | |
| AAGATACACTGCTTCGGCTG+CGG | - | chr4.4:37009170-37009189 | None:intergenic | 50.0% | |
| ATCGGAGACAAGACCAACAC+CGG | - | chr4.4:37008613-37008632 | None:intergenic | 50.0% | |
| CAAAAACCACCCACAAGACG+AGG | + | chr4.4:37008419-37008438 | MS.gene23362:CDS | 50.0% | |
| CAACCACAATCACCTCACCA+GGG | - | chr4.4:37009109-37009128 | None:intergenic | 50.0% | |
| CTTCAATCCATCACCGGTGT+TGG | + | chr4.4:37008597-37008616 | MS.gene23362:CDS | 50.0% | |
| CTTCTCCTCCCCATAACCAA+AGG | - | chr4.4:37009011-37009030 | None:intergenic | 50.0% | |
| CTTGGTTATGCTGCGAAAGC+CGG | + | chr4.4:37009341-37009360 | MS.gene23362:CDS | 50.0% | |
| GAGCTCAAGGTTAAGAGGGT+TGG | + | chr4.4:37009815-37009834 | MS.gene23362:CDS | 50.0% | |
| GTGAGGTTGCTTAAGGAAGC+TGG | + | chr4.4:37009548-37009567 | MS.gene23362:CDS | 50.0% | |
| GTTGTTAACGGTGACGATCC+CGG | - | chr4.4:37008571-37008590 | None:intergenic | 50.0% | |
| TCAACCACAATCACCTCACC+AGG | - | chr4.4:37009110-37009129 | None:intergenic | 50.0% | |
| TGTGGATACACCTAGCTCAG+AGG | + | chr4.4:37009631-37009650 | MS.gene23362:CDS | 50.0% | |
| TTACCCGGAAGCTTAGCCAT+CGG | + | chr4.4:37008660-37008679 | MS.gene23362:CDS | 50.0% | |
| TTAGGCCTTTGGTTATGGGG+AGG | + | chr4.4:37009003-37009022 | MS.gene23362:CDS | 50.0% | |
| TTGCTGTGAGGGATCCGTTT+GGG | + | chr4.4:37008979-37008998 | MS.gene23362:CDS | 50.0% | |
| TTTCCCTGGTGAGGTGATTG+TGG | + | chr4.4:37009103-37009122 | MS.gene23362:CDS | 50.0% | |
| ! | AAGAAGCGGTTGTTGTTGGG+AGG | - | chr4.4:37008294-37008313 | None:intergenic | 50.0% |
| ! | AGAAGCGGTTGTTGTTGGGA+GGG | - | chr4.4:37008293-37008312 | None:intergenic | 50.0% |
| ! | AGAGAAGGGAGAGAGGGTTT+TGG | - | chr4.4:37008330-37008349 | None:intergenic | 50.0% |
| ! | GAGAAGGGAGAGAGGGTTTT+GGG | - | chr4.4:37008329-37008348 | None:intergenic | 50.0% |
| ! | GAGAAGGGAGGGTTTGGTTA+GGG | - | chr4.4:37008271-37008290 | None:intergenic | 50.0% |
| ! | GCCGGTGTTCCTTTTCAACA+AGG | + | chr4.4:37009359-37009378 | MS.gene23362:CDS | 50.0% |
| ! | GTGGGTGGTTTTTGTTGGAG+AGG | - | chr4.4:37008413-37008432 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGAGGGAGAA+GGG | - | chr4.4:37008286-37008305 | None:intergenic | 50.0% |
| ! | TATGAGAGGGAGGTTTTCCC+TGG | + | chr4.4:37009089-37009108 | MS.gene23362:CDS | 50.0% |
| ! | TCCGTTTGGGTTTAGGCCTT+TGG | + | chr4.4:37008992-37009011 | MS.gene23362:CDS | 50.0% |
| ! | TGAGGGATCCGTTTGGGTTT+AGG | + | chr4.4:37008985-37009004 | MS.gene23362:CDS | 50.0% |
| !! | ATCACGTAGGCGATTTGGTG+AGG | + | chr4.4:37009247-37009266 | MS.gene23362:CDS | 50.0% |
| !!! | GAAAAGGGGTTTTCGGGTGT+CGG | - | chr4.4:37008355-37008374 | None:intergenic | 50.0% |
| !!! | GGGTACCGTTTTGGTTCTGT+GGG | + | chr4.4:37008744-37008763 | MS.gene23362:CDS | 50.0% |
| !!! | TGGGTACCGTTTTGGTTCTG+TGG | + | chr4.4:37008743-37008762 | MS.gene23362:CDS | 50.0% |
| ACAACTCCGCACTCTTCACG+AGG | - | chr4.4:37008468-37008487 | None:intergenic | 55.0% | |
| ATGGCCGATGGCTAAGCTTC+CGG | - | chr4.4:37008667-37008686 | None:intergenic | 55.0% | |
| GACAAGACCAACACCGGTGA+TGG | - | chr4.4:37008607-37008626 | None:intergenic | 55.0% | |
| GACAAGCCTCGTGAAGAGTG+CGG | + | chr4.4:37008459-37008478 | MS.gene23362:CDS | 55.0% | |
| GAGGGCTAAGTAGCAGAGAC+GGG | - | chr4.4:37008517-37008536 | None:intergenic | 55.0% | |
| GCAGCCACAACACCAGAATC+AGG | - | chr4.4:37009320-37009339 | None:intergenic | 55.0% | |
| GGAGGGCTAAGTAGCAGAGA+CGG | - | chr4.4:37008518-37008537 | None:intergenic | 55.0% | |
| GTTGCTGTGAGGGATCCGTT+TGG | + | chr4.4:37008978-37008997 | MS.gene23362:CDS | 55.0% | |
| TCGGAGAGAGAAGGGAGAGA+GGG | - | chr4.4:37008336-37008355 | None:intergenic | 55.0% | |
| TTGTTGGGAGGGAGAAGGGA+GGG | - | chr4.4:37008282-37008301 | None:intergenic | 55.0% | |
| ! | CGTGAAGAGTGCGGAGTTGT+TGG | + | chr4.4:37008468-37008487 | MS.gene23362:CDS | 55.0% |
| ! | GGAGAAGGGAGGGTTTGGTT+AGG | - | chr4.4:37008272-37008291 | None:intergenic | 55.0% |
| ! | GGTTGTTGTTGGGAGGGAGA+AGG | - | chr4.4:37008287-37008306 | None:intergenic | 55.0% |
| !! | TTCGGGTGTCGGAGAGAGAA+GGG | - | chr4.4:37008344-37008363 | None:intergenic | 55.0% |
| !! | TTTCGGGTGTCGGAGAGAGA+AGG | - | chr4.4:37008345-37008364 | None:intergenic | 55.0% |
| !!! | AAGGGAGAGAGGGTTTTGGG+AGG | - | chr4.4:37008326-37008345 | None:intergenic | 55.0% |
| CACGAGGCTTGTCGTCGTTG+AGG | - | chr4.4:37008452-37008471 | None:intergenic | 60.0% | |
| CCTTCAAGCACAGCACGGAC+CGG | - | chr4.4:37009470-37009489 | None:intergenic | 60.0% | |
| GGCTAAGTAGCAGAGACGGG+AGG | - | chr4.4:37008514-37008533 | None:intergenic | 60.0% | |
| GTCGGAGAGAGAAGGGAGAG+AGG | - | chr4.4:37008337-37008356 | None:intergenic | 60.0% | |
| GTTGTTGGGAGGGAGAAGGG+AGG | - | chr4.4:37008283-37008302 | None:intergenic | 60.0% | |
| TGGCCGATGGCTAAGCTTCC+GGG | - | chr4.4:37008666-37008685 | None:intergenic | 60.0% | |
| ! | GAGGGAGGTTTTCCCTGGTG+AGG | + | chr4.4:37009094-37009113 | MS.gene23362:CDS | 60.0% |
| !! | TCTGGTGTTGTGGCTGCGCT+TGG | + | chr4.4:37009323-37009342 | MS.gene23362:CDS | 60.0% |
| CCGGTCCGTGCTGTGCTTGA+AGG | + | chr4.4:37009467-37009486 | MS.gene23362:CDS | 65.0% | |
| CTCCAACACCGCGGCCAAGA+AGG | + | chr4.4:37008543-37008562 | MS.gene23362:CDS | 65.0% | |
| CTCCACGCTCTCCAACACCG+CGG | + | chr4.4:37008534-37008553 | MS.gene23362:CDS | 65.0% | |
| GGGAGGGAGAAGGGAGGGTT+TGG | - | chr4.4:37008277-37008296 | None:intergenic | 65.0% | |
| TGACGATCCCGGCGCCTTCT+TGG | - | chr4.4:37008560-37008579 | None:intergenic | 65.0% | |
| ! | GCGGTGTTGGAGAGCGTGGA+GGG | - | chr4.4:37008535-37008554 | None:intergenic | 65.0% |
| CGCCTTCTTGGCCGCGGTGT+TGG | - | chr4.4:37008548-37008567 | None:intergenic | 70.0% | |
| ! | CGCGGTGTTGGAGAGCGTGG+AGG | - | chr4.4:37008536-37008555 | None:intergenic | 70.0% |
| TCCCGGCGCCTTCTTGGCCG+CGG | - | chr4.4:37008554-37008573 | None:intergenic | 75.0% | |
| ! | CACCGCGGCCAAGAAGGCGC+CGG | + | chr4.4:37008549-37008568 | MS.gene23362:CDS | 75.0% |
| ! | GGCCGCGGTGTTGGAGAGCG+TGG | - | chr4.4:37008539-37008558 | None:intergenic | 75.0% |
| !! | ACCGCGGCCAAGAAGGCGCC+GGG | + | chr4.4:37008550-37008569 | MS.gene23362:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 37008240 | 37009943 | 37008240 | ID=MS.gene23362 |
| chr4.4 | mRNA | 37008240 | 37009943 | 37008240 | ID=MS.gene23362.t1;Parent=MS.gene23362 |
| chr4.4 | exon | 37008240 | 37009943 | 37008240 | ID=MS.gene23362.t1.exon1;Parent=MS.gene23362.t1 |
| chr4.4 | CDS | 37008240 | 37009943 | 37008240 | ID=cds.MS.gene23362.t1;Parent=MS.gene23362.t1 |
| Gene Sequence |
| Protein sequence |
