Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23648.t1 | XP_024629174.1 | 95.9 | 1189 | 48 | 1 | 1 | 1188 | 1 | 1189 | 0.00E+00 | 2083.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23648.t1 | F4K1G2 | 55.3 | 1057 | 434 | 9 | 143 | 1181 | 2 | 1037 | 1.5e-270 | 934.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23648.t1 | G7LCR6 | 95.7 | 1189 | 50 | 1 | 1 | 1188 | 1 | 1189 | 0.0e+00 | 2082.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene08876 | MS.gene23648 | PPI |
MS.gene23648 | MS.gene065345 | PPI |
MS.gene23648 | MS.gene025293 | PPI |
MS.gene037122 | MS.gene23648 | PPI |
MS.gene23648 | MS.gene057442 | PPI |
MS.gene23648 | MS.gene08628 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23648.t1 | MTR_8g035620 | 95.542 | 1189 | 52 | 1 | 1 | 1188 | 1 | 1189 | 0.0 | 2315 |
MS.gene23648.t1 | MTR_4g011790 | 22.954 | 501 | 328 | 15 | 146 | 618 | 118 | 588 | 9.03e-19 | 92.4 |
MS.gene23648.t1 | MTR_4g011790 | 23.016 | 504 | 330 | 15 | 146 | 621 | 118 | 591 | 1.72e-18 | 91.3 |
MS.gene23648.t1 | MTR_4g011790 | 22.612 | 513 | 330 | 16 | 146 | 621 | 118 | 600 | 3.62e-18 | 90.5 |
MS.gene23648.t1 | MTR_2g105570 | 23.827 | 533 | 337 | 18 | 111 | 616 | 46 | 536 | 2.05e-17 | 87.8 |
MS.gene23648.t1 | MTR_4g013210 | 21.713 | 502 | 302 | 16 | 146 | 621 | 113 | 549 | 1.65e-16 | 84.7 |
MS.gene23648.t1 | MTR_4g013210 | 22.083 | 480 | 312 | 15 | 146 | 593 | 113 | 562 | 1.14e-14 | 79.0 |
MS.gene23648.t1 | MTR_4g013210 | 23.797 | 395 | 242 | 13 | 256 | 621 | 74 | 438 | 2.80e-14 | 77.0 |
MS.gene23648.t1 | MTR_1g090737 | 22.500 | 520 | 347 | 11 | 117 | 622 | 82 | 559 | 3.96e-12 | 70.9 |
MS.gene23648.t1 | MTR_4g013210 | 22.506 | 391 | 215 | 14 | 254 | 621 | 72 | 397 | 1.27e-11 | 68.6 |
MS.gene23648.t1 | MTR_5g007640 | 24.291 | 494 | 316 | 20 | 142 | 616 | 120 | 574 | 1.36e-11 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23648.t1 | AT5G35930 | 50.168 | 1192 | 502 | 12 | 8 | 1181 | 12 | 1129 | 0.0 | 1141 |
MS.gene23648.t1 | AT5G35930 | 52.980 | 1057 | 458 | 9 | 143 | 1181 | 2 | 1037 | 0.0 | 1097 |
MS.gene23648.t1 | AT5G35930 | 51.908 | 917 | 410 | 8 | 283 | 1181 | 1 | 904 | 0.0 | 937 |
MS.gene23648.t1 | AT5G35930 | 51.908 | 917 | 410 | 8 | 283 | 1181 | 1 | 904 | 0.0 | 937 |
MS.gene23648.t1 | AT3G16170 | 23.168 | 505 | 328 | 16 | 146 | 624 | 133 | 603 | 2.71e-19 | 94.0 |
MS.gene23648.t1 | AT1G51680 | 23.791 | 517 | 321 | 17 | 145 | 637 | 92 | 559 | 1.04e-12 | 72.8 |
MS.gene23648.t1 | AT3G48990 | 20.980 | 510 | 354 | 14 | 124 | 622 | 36 | 507 | 8.30e-12 | 69.7 |
MS.gene23648.t1 | AT1G20510 | 22.798 | 386 | 243 | 10 | 256 | 625 | 194 | 540 | 5.27e-11 | 67.4 |
MS.gene23648.t1 | AT3G21240 | 22.449 | 490 | 324 | 17 | 145 | 616 | 90 | 541 | 5.65e-11 | 67.0 |
MS.gene23648.t1 | AT1G30520 | 20.500 | 400 | 272 | 10 | 242 | 619 | 168 | 543 | 5.89e-11 | 67.0 |
MS.gene23648.t1 | AT1G30520 | 20.500 | 400 | 272 | 10 | 242 | 619 | 168 | 543 | 5.89e-11 | 67.0 |
Find 257 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGACGATGATTTCTTTATTA+TGG | 0.141918 | 8.1:+67426333 | MS.gene23648:CDS |
TGCACATGTTGCTCACAATT+TGG | 0.144000 | 8.1:+67426375 | MS.gene23648:CDS |
TCAAATGTTGATCTCATTAT+AGG | 0.163314 | 8.1:+67421513 | MS.gene23648:CDS |
GTAAAATTGCCTCAAAATTA+TGG | 0.179906 | 8.1:+67424823 | MS.gene23648:CDS |
CAAAACATCAACTTTATCTT+TGG | 0.189693 | 8.1:-67426590 | None:intergenic |
TCTTCTGCAACTTATTAAAA+AGG | 0.202078 | 8.1:+67425308 | MS.gene23648:CDS |
TCCCTTCTAAGCGCTTAAAA+AGG | 0.228455 | 8.1:+67426614 | MS.gene23648:CDS |
AACTGCAATGTAGTGCTTAT+TGG | 0.245488 | 8.1:+67424703 | MS.gene23648:CDS |
ATATAAATTCCCACTATCTT+TGG | 0.247268 | 8.1:-67421375 | None:intergenic |
TGTTATCTGATGTATACTTC+TGG | 0.251820 | 8.1:+67421708 | MS.gene23648:CDS |
ACTACATTGCAGTTAGTAAT+TGG | 0.256218 | 8.1:-67424694 | None:intergenic |
ATCCTTTCGTTTGGCCAAAA+AGG | 0.259106 | 8.1:-67421471 | None:intergenic |
ACAACAACTGGGTGAGTTAT+TGG | 0.265149 | 8.1:+67425104 | MS.gene23648:CDS |
TTCTCTTCGCCTTTGATGAT+TGG | 0.269906 | 8.1:+67432212 | MS.gene23648:CDS |
GACGATGATTTCTTTATTAT+GGG | 0.271108 | 8.1:+67426334 | MS.gene23648:CDS |
CAACGTTGTATTCCCATATT+AGG | 0.271890 | 8.1:-67431909 | None:intergenic |
AGTTAGGGGAAGTAGAATTT+TGG | 0.273186 | 8.1:-67419717 | None:intergenic |
TGGGGAAGCCTTCTTGCCTT+TGG | 0.281399 | 8.1:+67421446 | MS.gene23648:CDS |
AGGAAAAGGGAGACCTAATA+TGG | 0.289445 | 8.1:+67431896 | MS.gene23648:intron |
GTGAAGTCTTGGTTGGAGTT+AGG | 0.289600 | 8.1:-67419733 | None:intergenic |
AGAGCCATACAAAGCTTAAA+AGG | 0.296937 | 8.1:-67426433 | None:intergenic |
GCACATGTTGCTCACAATTT+GGG | 0.301184 | 8.1:+67426376 | MS.gene23648:CDS |
CATGTTGCTTTGGAATTTCA+AGG | 0.306316 | 8.1:-67432283 | None:intergenic |
GATCGTGCTCTTTGCATAAT+AGG | 0.309303 | 8.1:+67426470 | MS.gene23648:CDS |
TCATGTGGAGGCAGTATATA+CGG | 0.309480 | 8.1:+67429777 | MS.gene23648:CDS |
ACATAAGCAGATGCAGTAAT+TGG | 0.315627 | 8.1:-67431937 | None:intergenic |
ATTTGCGTTTGTTCTAGTTC+TGG | 0.322067 | 8.1:+67432086 | MS.gene23648:CDS |
TTATAACGAACCTTGAGATT+TGG | 0.322110 | 8.1:-67419911 | None:intergenic |
TGCAACAAGGTGTTGTATAA+AGG | 0.322942 | 8.1:+67426721 | MS.gene23648:CDS |
ACAAATTCTCAACTTCTTCC+AGG | 0.326568 | 8.1:-67424984 | None:intergenic |
TCAGATTTGTATTTATTCAT+TGG | 0.326978 | 8.1:+67426883 | MS.gene23648:CDS |
CGTCTAAGCTCTATCCTTCA+TGG | 0.330397 | 8.1:+67419862 | MS.gene23648:CDS |
GATATTTCACGATGCTTTGC+TGG | 0.330880 | 8.1:+67426294 | MS.gene23648:intron |
TTAGTAATTGGTAAACCTAT+TGG | 0.335883 | 8.1:-67424682 | None:intergenic |
AGTTCCCGTGTTTGGTTCTC+TGG | 0.337364 | 8.1:+67430723 | MS.gene23648:CDS |
GAGGTCACATGAAGAGCTTT+TGG | 0.337985 | 8.1:+67426806 | MS.gene23648:CDS |
AATGAAGATGATGACAATAT+TGG | 0.341854 | 8.1:-67426691 | None:intergenic |
ATCATCCAACTTCTGATTGC+AGG | 0.344242 | 8.1:-67425129 | None:intergenic |
ATGTAGTTCTTCAACAGATT+TGG | 0.344307 | 8.1:+67421650 | MS.gene23648:CDS |
TGCAGGCTTATTCTGTTAAT+AGG | 0.351603 | 8.1:+67423450 | MS.gene23648:intron |
AAAACATCAACTTTATCTTT+GGG | 0.352795 | 8.1:-67426589 | None:intergenic |
ATCCCAACGGATCCATAGTT+TGG | 0.353140 | 8.1:+67430888 | MS.gene23648:CDS |
ATTGAAGGACAAACAACAAC+TGG | 0.358221 | 8.1:+67425092 | MS.gene23648:CDS |
ACTTCATACCTTCCAAACTA+TGG | 0.360142 | 8.1:-67430900 | None:intergenic |
TTCTCTGCATACATGTTAGA+AGG | 0.367259 | 8.1:+67426923 | MS.gene23648:CDS |
TTCTAAAGTATAATTCGCTT+TGG | 0.368841 | 8.1:-67424870 | None:intergenic |
ATATCGATACCGCAGTTATA+CGG | 0.368924 | 8.1:-67429949 | None:intergenic |
TGAAGTCTTGGTTGGAGTTA+GGG | 0.369997 | 8.1:-67419732 | None:intergenic |
GTTTGCAAAACTTAAGTTGC+CGG | 0.372347 | 8.1:+67432181 | MS.gene23648:CDS |
AAGTTCAAGATTGATGTCTT+TGG | 0.375075 | 8.1:-67423620 | None:intergenic |
ACATCAATCTTGAACTTATA+CGG | 0.377822 | 8.1:+67423626 | MS.gene23648:CDS |
CATTGGCTGACCAAGTTGTT+TGG | 0.379165 | 8.1:-67426768 | None:intergenic |
AAATGAACTTTCAGTATGAT+TGG | 0.379983 | 8.1:-67426545 | None:intergenic |
CAAATGTTGATCTCATTATA+GGG | 0.383247 | 8.1:+67421514 | MS.gene23648:CDS |
ATGTATACTTCTGGATCATC+TGG | 0.385691 | 8.1:+67421717 | MS.gene23648:CDS |
ACAGCAGCATCATTTATATC+TGG | 0.385749 | 8.1:-67425018 | None:intergenic |
ATGCACGGCCCAGCAAATAT+TGG | 0.386740 | 8.1:-67431017 | None:intergenic |
ATGTGACCTCTGCTTCCTCT+TGG | 0.387104 | 8.1:-67426793 | None:intergenic |
AGTAGCCACAGTATACTAAA+TGG | 0.387924 | 8.1:-67430691 | None:intergenic |
CTTTGGCTTATACTCTTCAA+TGG | 0.391590 | 8.1:-67421358 | None:intergenic |
AGAAGTTGAGAATTTGTTAA+GGG | 0.393739 | 8.1:+67424990 | MS.gene23648:CDS |
ATCGCCGTCATCCACGCTTC+CGG | 0.394712 | 8.1:+67419676 | MS.gene23648:CDS |
AAATAGAGCTGAGAAATTCT+TGG | 0.400519 | 8.1:-67423219 | None:intergenic |
TGAAGCCTTTATAATATTGA+AGG | 0.403942 | 8.1:+67425077 | MS.gene23648:CDS |
TAAGGTTAATTATGAGTTGT+TGG | 0.407349 | 8.1:+67425224 | MS.gene23648:CDS |
GTATTTCTGTAGGTGGTTGT+TGG | 0.407551 | 8.1:+67428003 | MS.gene23648:intron |
TTGCTAACAAGTGTTCCAAT+AGG | 0.408051 | 8.1:+67424667 | MS.gene23648:CDS |
CGCCTTTGATGATTGGTGGC+CGG | 0.416074 | 8.1:+67432219 | MS.gene23648:CDS |
GAATTAGAAGTTCCCGTGTT+TGG | 0.417682 | 8.1:+67430715 | MS.gene23648:CDS |
TCTGAACCGCTCCCTCTTCA+CGG | 0.418987 | 8.1:-67421284 | None:intergenic |
TTTGTCCTTCAATATTATAA+AGG | 0.420000 | 8.1:-67425082 | None:intergenic |
TCAGCGTGAGTTTGCAATAC+AGG | 0.420809 | 8.1:-67423509 | None:intergenic |
ACTGACAGTATCCTTTCGTT+TGG | 0.422407 | 8.1:-67421480 | None:intergenic |
TTTGTAATCGAGAGCGTATA+AGG | 0.422883 | 8.1:-67429730 | None:intergenic |
ACTGGTGGTCCAATATTTGC+TGG | 0.430984 | 8.1:+67431008 | MS.gene23648:CDS |
TTCATTTAGTAAAAGTAACT+TGG | 0.433523 | 8.1:+67421545 | MS.gene23648:CDS |
AGCGAATTATACTTTAGAAC+TGG | 0.434992 | 8.1:+67424874 | MS.gene23648:CDS |
AAGAAGTTGAGAATTTGTTA+AGG | 0.435328 | 8.1:+67424989 | MS.gene23648:CDS |
GCAACAAGGTGTTGTATAAA+GGG | 0.443268 | 8.1:+67426722 | MS.gene23648:CDS |
TGTCTGCATGCGTCTACAAC+TGG | 0.445144 | 8.1:-67428615 | None:intergenic |
GGTTCTAACGATGTTACGTT+AGG | 0.445197 | 8.1:+67426637 | MS.gene23648:CDS |
CCCTACAACCAACGAAAATC+CGG | 0.446019 | 8.1:-67432238 | None:intergenic |
TTATTCTGTTAATAGGCTTA+CGG | 0.446273 | 8.1:+67423457 | MS.gene23648:CDS |
TCTGCTTCCTCTTGGAACAT+TGG | 0.446930 | 8.1:-67426785 | None:intergenic |
CTTGAGATTTGGCTGTGATC+AGG | 0.447470 | 8.1:-67419900 | None:intergenic |
AGAACGGCGGGGAGGTGGAT+TGG | 0.448060 | 8.1:-67419777 | None:intergenic |
GGTGGTTCTTGCATATTTAG+TGG | 0.448224 | 8.1:+67424763 | MS.gene23648:CDS |
TCCCGTGTCTTCTAGTGGTA+AGG | 0.451450 | 8.1:+67425206 | MS.gene23648:CDS |
GTAATATGTTGCTTGGTAGA+TGG | 0.451515 | 8.1:+67430848 | MS.gene23648:intron |
GTGGTAGAACGGCGGGGAGG+TGG | 0.455587 | 8.1:-67419782 | None:intergenic |
TCAATGGAGTATCTCAAAAC+AGG | 0.455889 | 8.1:-67421612 | None:intergenic |
GACTAAGAGTGTCAAGGATA+AGG | 0.456371 | 8.1:+67425263 | MS.gene23648:CDS |
TTGGGCTTGCGGTGGCTGTT+CGG | 0.458325 | 8.1:-67419648 | None:intergenic |
TTGCCATTCTCTCAGTATTG+AGG | 0.460068 | 8.1:+67421421 | MS.gene23648:CDS |
TTGCTTTATGTGGCCTCTAC+CGG | 0.463044 | 8.1:+67429923 | MS.gene23648:CDS |
GTGCTTGTATGCTGCAGAAA+TGG | 0.463373 | 8.1:+67431322 | MS.gene23648:CDS |
TAAAGGGCAAACTTCTGTAA+TGG | 0.469032 | 8.1:+67426738 | MS.gene23648:CDS |
TTCTCTCAGTATTGAGGTGT+GGG | 0.469575 | 8.1:+67421427 | MS.gene23648:CDS |
AGAGTATAAGCCAAAGATAG+TGG | 0.470385 | 8.1:+67421365 | MS.gene23648:CDS |
TCTGTAAAGATGAAACGGTT+GGG | 0.471349 | 8.1:-67425177 | None:intergenic |
TCTTCGCCTTTGATGATTGG+TGG | 0.471373 | 8.1:+67432215 | MS.gene23648:CDS |
TAATGTTTCATGTAGGTTCG+TGG | 0.472657 | 8.1:+67429899 | MS.gene23648:intron |
AATTCTTCCTTTAAAACCAA+TGG | 0.473960 | 8.1:-67424646 | None:intergenic |
GCGGGAAAGGTTGGCGACGC+CGG | 0.479474 | 8.1:-67419695 | None:intergenic |
CAAGGAATGTATCCTTTGAC+AGG | 0.480885 | 8.1:+67423148 | MS.gene23648:CDS |
GGTTCGTGGCTTGCTTTATG+TGG | 0.481622 | 8.1:+67429913 | MS.gene23648:intron |
TCAGTGCCACACACTCCTTT+AGG | 0.482344 | 8.1:-67421744 | None:intergenic |
GGGGAGATGAACCGTTTCCT+TGG | 0.483990 | 8.1:+67426659 | MS.gene23648:CDS |
CTGAAATTGCTTGTGCTAAG+TGG | 0.484593 | 8.1:+67423551 | MS.gene23648:CDS |
GACCGTATTGTAAAAGTCCA+TGG | 0.487416 | 8.1:+67424949 | MS.gene23648:CDS |
ATACAAAGCTTAAAAGGAGT+TGG | 0.488182 | 8.1:-67426427 | None:intergenic |
CGGCTGTTCCATCACTAATA+CGG | 0.492230 | 8.1:+67423477 | MS.gene23648:CDS |
GTGGTTGTTGGATGTTACAT+TGG | 0.492700 | 8.1:+67428015 | MS.gene23648:CDS |
CTTCCAAACTATGGATCCGT+TGG | 0.496439 | 8.1:-67430891 | None:intergenic |
TTGGATCAACACCAGGAAAA+GGG | 0.497594 | 8.1:+67431883 | MS.gene23648:intron |
CAAATTCTCAACTTCTTCCA+GGG | 0.501763 | 8.1:-67424983 | None:intergenic |
AGTTATACGGCCACCGGTAG+AGG | 0.502569 | 8.1:-67429936 | None:intergenic |
ATGATTCTGTAAAGATGAAA+CGG | 0.503789 | 8.1:-67425182 | None:intergenic |
AATAATATATTCAACAGAAG+GGG | 0.504147 | 8.1:-67421400 | None:intergenic |
AAATTCACCTCATCAATTGC+AGG | 0.504489 | 8.1:-67429804 | None:intergenic |
GTGCTCTTTGCATAATAGGT+TGG | 0.507192 | 8.1:+67426474 | MS.gene23648:CDS |
TTTGGAATGGACACATCTGT+TGG | 0.508610 | 8.1:+67428058 | MS.gene23648:CDS |
TTCTGTAAAGATGAAACGGT+TGG | 0.512342 | 8.1:-67425178 | None:intergenic |
ACACCTCAATACTGAGAGAA+TGG | 0.515767 | 8.1:-67421424 | None:intergenic |
GCAATAATATATTCAACAGA+AGG | 0.517361 | 8.1:-67421402 | None:intergenic |
GTTTAGTGGTTCTATGCAGT+GGG | 0.519242 | 8.1:+67427515 | MS.gene23648:intron |
GCTTGATGAATCGCATTGGC+TGG | 0.519654 | 8.1:+67421572 | MS.gene23648:CDS |
TGGATACACACCAAACAACT+TGG | 0.519846 | 8.1:+67426758 | MS.gene23648:CDS |
CACATGTTGCTCACAATTTG+GGG | 0.523615 | 8.1:+67426377 | MS.gene23648:CDS |
GGTCACCGTGGTAGAACGGC+GGG | 0.524528 | 8.1:-67419789 | None:intergenic |
AATGTATCCTTTGACAGGGC+AGG | 0.525337 | 8.1:+67423153 | MS.gene23648:CDS |
GTACATACTTTGATTGCAAG+AGG | 0.526605 | 8.1:+67424620 | MS.gene23648:CDS |
GTTCTAACGATGTTACGTTA+GGG | 0.531874 | 8.1:+67426638 | MS.gene23648:CDS |
AGCTGAGAAATTCTTGGAGG+TGG | 0.531962 | 8.1:-67423213 | None:intergenic |
TTTGCAAAACTTAAGTTGCC+GGG | 0.532524 | 8.1:+67432182 | MS.gene23648:CDS |
TTCCAAACTATGGATCCGTT+GGG | 0.532594 | 8.1:-67430890 | None:intergenic |
CAGTGGGAGATCAAACTAGA+AGG | 0.532734 | 8.1:+67427531 | MS.gene23648:CDS |
GCCAATGCGATTCATCAAGC+TGG | 0.532840 | 8.1:-67421569 | None:intergenic |
ACGCATGCAGACAATTGATC+TGG | 0.532852 | 8.1:+67428625 | MS.gene23648:CDS |
GGATCATCTGGAAAGCCTAA+AGG | 0.534315 | 8.1:+67421729 | MS.gene23648:CDS |
GGAAGGGAATGCCAAGGAAA+CGG | 0.535679 | 8.1:-67426670 | None:intergenic |
CCATGGGCAACGTATTGCCC+TGG | 0.537977 | 8.1:+67424966 | MS.gene23648:CDS |
TGGTTGTTGGATGTTACATT+GGG | 0.538352 | 8.1:+67428016 | MS.gene23648:CDS |
CAATAATATATTCAACAGAA+GGG | 0.539671 | 8.1:-67421401 | None:intergenic |
GGTTTAGTGGTTCTATGCAG+TGG | 0.546050 | 8.1:+67427514 | MS.gene23648:intron |
AGATGGAGATGTTCTTGCAT+TGG | 0.547170 | 8.1:+67430865 | MS.gene23648:CDS |
GGTTGGCGACGCCGGAAGCG+TGG | 0.549572 | 8.1:-67419687 | None:intergenic |
GTAAGAGCGTGGTGAAGTCT+TGG | 0.551534 | 8.1:-67419744 | None:intergenic |
TGCGTTTGTTCTAGTTCTGG+AGG | 0.552984 | 8.1:+67432089 | MS.gene23648:CDS |
GATGGTGTCCACCGTGAAGA+GGG | 0.553102 | 8.1:+67421273 | MS.gene23648:CDS |
ATTCTCTCAGTATTGAGGTG+TGG | 0.553141 | 8.1:+67421426 | MS.gene23648:CDS |
TGGTACCTGCAATCAGAAGT+TGG | 0.554293 | 8.1:+67425124 | MS.gene23648:CDS |
AATAGCTCCTGCCCTGTCAA+AGG | 0.554736 | 8.1:-67423160 | None:intergenic |
GTTCTTCAACAGATTTGGCA+TGG | 0.556731 | 8.1:+67421655 | MS.gene23648:CDS |
AGCGTCTCCCACAAGGTGAA+AGG | 0.558893 | 8.1:-67423584 | None:intergenic |
ATGTTGCTTTGGAATTTCAA+GGG | 0.559770 | 8.1:-67432282 | None:intergenic |
AAGATGATGACAATATTGGA+AGG | 0.559883 | 8.1:-67426687 | None:intergenic |
TTGTGTTGATGCTTCACCCA+TGG | 0.560130 | 8.1:+67426846 | MS.gene23648:CDS |
GAAGTCTTGGTTGGAGTTAG+GGG | 0.561063 | 8.1:-67419731 | None:intergenic |
TTCATTTAGCCGCTGCAACA+AGG | 0.562852 | 8.1:+67426708 | MS.gene23648:CDS |
GAGCGTGGTGAAGTCTTGGT+TGG | 0.563403 | 8.1:-67419740 | None:intergenic |
CTTTATGTGGCCTCTACCGG+TGG | 0.564776 | 8.1:+67429926 | MS.gene23648:CDS |
GTTGAGAGTAAGTGAAAGAA+CGG | 0.565053 | 8.1:-67419810 | None:intergenic |
GGAGTGTGTGGCACTGAACA+AGG | 0.565087 | 8.1:+67421750 | MS.gene23648:CDS |
TGATTGCAAGAGGATACCAT+TGG | 0.565883 | 8.1:+67424630 | MS.gene23648:CDS |
CTGTAAAGATGAAACGGTTG+GGG | 0.566117 | 8.1:-67425176 | None:intergenic |
AAGTGTGTACTCATTCAAAC+TGG | 0.566453 | 8.1:+67431345 | MS.gene23648:CDS |
ATACGGTGTTTCTGAGGTCA+TGG | 0.566949 | 8.1:-67419602 | None:intergenic |
AGAATTGTCCGTATTAGTGA+TGG | 0.567722 | 8.1:-67423485 | None:intergenic |
GTTCATTTCCTCTCGAGTCA+AGG | 0.568276 | 8.1:+67426560 | MS.gene23648:CDS |
AAAAGGATCCAAAGGCAAGA+AGG | 0.568328 | 8.1:-67421454 | None:intergenic |
GATGATTTCTTTATTATGGG+TGG | 0.568908 | 8.1:+67426337 | MS.gene23648:CDS |
ATGCCTCTCACACTTCAGAC+AGG | 0.569394 | 8.1:+67431986 | MS.gene23648:CDS |
TCGTGTGAAATGCAGCAATA+CGG | 0.569742 | 8.1:-67419619 | None:intergenic |
GAACGGTCACCGTGGTAGAA+CGG | 0.570410 | 8.1:-67419793 | None:intergenic |
ATCAAAGTATGTACAATCGC+CGG | 0.570437 | 8.1:-67424611 | None:intergenic |
GTAGTGCTTATTGGTGAAAA+CGG | 0.570737 | 8.1:+67424712 | MS.gene23648:CDS |
CAACGGATCCATAGTTTGGA+AGG | 0.570864 | 8.1:+67430892 | MS.gene23648:CDS |
TAGAGCTGAGAAATTCTTGG+AGG | 0.571658 | 8.1:-67423216 | None:intergenic |
CTGGTGGTCCAATATTTGCT+GGG | 0.574719 | 8.1:+67431009 | MS.gene23648:CDS |
GGAAAAGGGAGACCTAATAT+GGG | 0.576972 | 8.1:+67431897 | MS.gene23648:intron |
CGATGGTGTCCACCGTGAAG+AGG | 0.577409 | 8.1:+67421272 | MS.gene23648:CDS |
AAGAGTGTCAAGGATAAGGT+TGG | 0.581057 | 8.1:+67425267 | MS.gene23648:CDS |
ATGGCTCTTCTCCATAAAAG+AGG | 0.582942 | 8.1:+67426448 | MS.gene23648:CDS |
TCTTTGAGCTCGCTGAAAGG+AGG | 0.589038 | 8.1:-67423265 | None:intergenic |
TCATTTCCCGTGTCTTCTAG+TGG | 0.590784 | 8.1:+67425201 | MS.gene23648:CDS |
TTGTGCAGTAATATGTTGCT+TGG | 0.591644 | 8.1:+67430841 | MS.gene23648:intron |
GGAATCATCCTTGACTCGAG+AGG | 0.592302 | 8.1:-67426568 | None:intergenic |
TGAAAACGGTGCGCTAAATG+AGG | 0.592456 | 8.1:+67424726 | MS.gene23648:CDS |
ATCCGGCCACCAATCATCAA+AGG | 0.593741 | 8.1:-67432221 | None:intergenic |
ACCTCCCCGCCGTTCTACCA+CGG | 0.597727 | 8.1:+67419784 | MS.gene23648:CDS |
GACGCCGGAAGCGTGGATGA+CGG | 0.598375 | 8.1:-67419680 | None:intergenic |
GAGTATAAGCCAAAGATAGT+GGG | 0.601040 | 8.1:+67421366 | MS.gene23648:CDS |
AACCTTACCACTAGAAGACA+CGG | 0.602059 | 8.1:-67425208 | None:intergenic |
ACCGTATTGTAAAAGTCCAT+GGG | 0.602878 | 8.1:+67424950 | MS.gene23648:CDS |
GCGGGTCATGAGCACCATGA+AGG | 0.603683 | 8.1:-67419876 | None:intergenic |
CATGTGGAGGCAGTATATAC+GGG | 0.604056 | 8.1:+67429778 | MS.gene23648:CDS |
AATGTTCCAAGAGGAAGCAG+AGG | 0.604714 | 8.1:+67426787 | MS.gene23648:CDS |
TTTGTTCAGAAAACAACTGG+TGG | 0.604920 | 8.1:+67430993 | MS.gene23648:intron |
ATTTGGCTGTGATCAGGTGC+GGG | 0.605125 | 8.1:-67419894 | None:intergenic |
ACGAGAATTAAGAGAACGAA+CGG | 0.608045 | 8.1:-67419842 | None:intergenic |
TAACCTGTCTGAAGTGTGAG+AGG | 0.608810 | 8.1:-67431989 | None:intergenic |
TGTCCACCGTGAAGAGGGAG+CGG | 0.608970 | 8.1:+67421278 | MS.gene23648:CDS |
CCAGGGCAATACGTTGCCCA+TGG | 0.610138 | 8.1:-67424966 | None:intergenic |
CTGATCACAGCCAAATCTCA+AGG | 0.613104 | 8.1:+67419901 | MS.gene23648:CDS |
TTCTAACGATGTTACGTTAG+GGG | 0.613562 | 8.1:+67426639 | MS.gene23648:CDS |
GGCGAAGAGAAAATATCCCC+CGG | 0.613716 | 8.1:-67432200 | None:intergenic |
GACAGCCAGAGAACCAAACA+CGG | 0.614344 | 8.1:-67430728 | None:intergenic |
TCTAACGATGTTACGTTAGG+GGG | 0.616118 | 8.1:+67426640 | MS.gene23648:CDS |
ACCAGCTTGATGAATCGCAT+TGG | 0.617253 | 8.1:+67421568 | MS.gene23648:CDS |
AGATGATGACAATATTGGAA+GGG | 0.621321 | 8.1:-67426686 | None:intergenic |
GGGAGATCAAACTAGAAGGT+CGG | 0.621823 | 8.1:+67427535 | MS.gene23648:CDS |
AGAGAATAATGTACCTCATG+AGG | 0.626171 | 8.1:-67431053 | None:intergenic |
GAATCTGATATAATGTCCGA+AGG | 0.627899 | 8.1:+67424796 | MS.gene23648:CDS |
GCAGCAATACGGTGTTTCTG+AGG | 0.628535 | 8.1:-67419608 | None:intergenic |
TATTCTACTGTAGGTAACGA+TGG | 0.629199 | 8.1:+67421255 | MS.gene23648:intron |
GATTTGGCTGTGATCAGGTG+CGG | 0.629708 | 8.1:-67419895 | None:intergenic |
AGTTGAAAGCGTCTCCCACA+AGG | 0.630165 | 8.1:-67423591 | None:intergenic |
ATTATTGACTAAGAGTGTCA+AGG | 0.632202 | 8.1:+67425257 | MS.gene23648:CDS |
GTCTATAAGCTATCATGTGG+AGG | 0.632709 | 8.1:+67429765 | MS.gene23648:CDS |
ATAATATATTCAACAGAAGG+GGG | 0.634098 | 8.1:-67421399 | None:intergenic |
CGGGTCACCTGCAATTGATG+AGG | 0.635477 | 8.1:+67429797 | MS.gene23648:CDS |
CTAATATGGGAATACAACGT+TGG | 0.637142 | 8.1:+67431910 | MS.gene23648:CDS |
TTGCAAAACTTAAGTTGCCG+GGG | 0.638621 | 8.1:+67432183 | MS.gene23648:CDS |
GTTCTTGCATTGGATCCCAA+CGG | 0.640693 | 8.1:+67430875 | MS.gene23648:CDS |
ACCTTCTGTTAGTCCTCATG+AGG | 0.642499 | 8.1:+67431040 | MS.gene23648:CDS |
GGAAAGCCTAAAGGAGTGTG+TGG | 0.643239 | 8.1:+67421738 | MS.gene23648:CDS |
TACCGCAGTTATACGGCCAC+CGG | 0.643513 | 8.1:-67429942 | None:intergenic |
TATACAACACCTTGTTGCAG+CGG | 0.644162 | 8.1:-67426717 | None:intergenic |
GAGGGTGAGCTATATGTTGG+TGG | 0.646643 | 8.1:+67424745 | MS.gene23648:CDS |
AAGAATATAAAATCACCACT+TGG | 0.654911 | 8.1:-67424916 | None:intergenic |
CGGTTGGGGAGTAAAACTGA+TGG | 0.660612 | 8.1:-67425162 | None:intergenic |
TTGAAGGACAAACAACAACT+GGG | 0.662725 | 8.1:+67425093 | MS.gene23648:CDS |
TTAGTCAAACAGTTGCCAAG+TGG | 0.664188 | 8.1:+67424901 | MS.gene23648:CDS |
ACCTCATGAGGACTAACAGA+AGG | 0.664502 | 8.1:-67431041 | None:intergenic |
AATGAGGGTGAGCTATATGT+TGG | 0.665072 | 8.1:+67424742 | MS.gene23648:CDS |
GAGTCTTTAGACACAACCAT+GGG | 0.666464 | 8.1:-67426862 | None:intergenic |
AATATTGGAAGGGAATGCCA+AGG | 0.667029 | 8.1:-67426676 | None:intergenic |
TGCAAAACTTAAGTTGCCGG+GGG | 0.670331 | 8.1:+67432184 | MS.gene23648:CDS |
GGACTAACAGAAGGTATGCA+CGG | 0.676125 | 8.1:-67431032 | None:intergenic |
GTTCGCCATTTAGTATACTG+TGG | 0.677406 | 8.1:+67430686 | MS.gene23648:CDS |
AAGGAATGTATCCTTTGACA+GGG | 0.682866 | 8.1:+67423149 | MS.gene23648:CDS |
ACCGTGGTAGAACGGCGGGG+AGG | 0.687530 | 8.1:-67419785 | None:intergenic |
ACCTTACCACTAGAAGACAC+GGG | 0.691861 | 8.1:-67425207 | None:intergenic |
ACAGCCAGAGAACCAAACAC+GGG | 0.692734 | 8.1:-67430727 | None:intergenic |
TGGTCAGCCAATGTTCCAAG+AGG | 0.693641 | 8.1:+67426778 | MS.gene23648:CDS |
TGAGTCTTTAGACACAACCA+TGG | 0.694311 | 8.1:-67426863 | None:intergenic |
TGTGTCTATAAGCTATCATG+TGG | 0.697084 | 8.1:+67429762 | MS.gene23648:CDS |
TACCGGTGGCCGTATAACTG+CGG | 0.697265 | 8.1:+67429940 | MS.gene23648:CDS |
CGGTCACCGTGGTAGAACGG+CGG | 0.697355 | 8.1:-67419790 | None:intergenic |
TCTCTCAGTATTGAGGTGTG+GGG | 0.700726 | 8.1:+67421428 | MS.gene23648:CDS |
GACGCGCTGTTGTAAGAGCG+TGG | 0.700772 | 8.1:-67419755 | None:intergenic |
GAACCGCTCCCTCTTCACGG+TGG | 0.705972 | 8.1:-67421281 | None:intergenic |
GTCACCGTGGTAGAACGGCG+GGG | 0.709304 | 8.1:-67419788 | None:intergenic |
GAACTTATACGGAAGTACCG+AGG | 0.710928 | 8.1:+67423637 | MS.gene23648:CDS |
GAAAACGGTGCGCTAAATGA+GGG | 0.717819 | 8.1:+67424727 | MS.gene23648:CDS |
AAGTGAAAGAACGGTCACCG+TGG | 0.752740 | 8.1:-67419801 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 67419604 | 67432313 | 67419604 | ID=MS.gene23648 |
chr8.1 | mRNA | 67419604 | 67432313 | 67419604 | ID=MS.gene23648.t1;Parent=MS.gene23648 |
chr8.1 | exon | 67419604 | 67419922 | 67419604 | ID=MS.gene23648.t1.exon1;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67419604 | 67419922 | 67419604 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67421268 | 67421771 | 67421268 | ID=MS.gene23648.t1.exon2;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67421268 | 67421771 | 67421268 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67423122 | 67423318 | 67423122 | ID=MS.gene23648.t1.exon3;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67423122 | 67423318 | 67423122 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67423455 | 67423658 | 67423455 | ID=MS.gene23648.t1.exon4;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67423455 | 67423658 | 67423455 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67424607 | 67425329 | 67424607 | ID=MS.gene23648.t1.exon5;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67424607 | 67425329 | 67424607 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67426295 | 67426944 | 67426295 | ID=MS.gene23648.t1.exon6;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67426295 | 67426944 | 67426295 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67427521 | 67427596 | 67427521 | ID=MS.gene23648.t1.exon7;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67427521 | 67427596 | 67427521 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67428015 | 67428101 | 67428015 | ID=MS.gene23648.t1.exon8;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67428015 | 67428101 | 67428015 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67428603 | 67428646 | 67428603 | ID=MS.gene23648.t1.exon9;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67428603 | 67428646 | 67428603 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67429710 | 67429818 | 67429710 | ID=MS.gene23648.t1.exon10;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67429710 | 67429818 | 67429710 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67429914 | 67429973 | 67429914 | ID=MS.gene23648.t1.exon11;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67429914 | 67429973 | 67429914 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67430685 | 67430766 | 67430685 | ID=MS.gene23648.t1.exon12;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67430685 | 67430766 | 67430685 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67430849 | 67430913 | 67430849 | ID=MS.gene23648.t1.exon13;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67430849 | 67430913 | 67430849 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67431002 | 67431061 | 67431002 | ID=MS.gene23648.t1.exon14;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67431002 | 67431061 | 67431002 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67431322 | 67431366 | 67431322 | ID=MS.gene23648.t1.exon15;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67431322 | 67431366 | 67431322 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67431898 | 67432007 | 67431898 | ID=MS.gene23648.t1.exon16;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67431898 | 67432007 | 67431898 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
chr8.1 | exon | 67432082 | 67432313 | 67432082 | ID=MS.gene23648.t1.exon17;Parent=MS.gene23648.t1 |
chr8.1 | CDS | 67432082 | 67432313 | 67432082 | ID=cds.MS.gene23648.t1;Parent=MS.gene23648.t1 |
Gene Sequence |
Protein sequence |