Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23939.t1 | RHN65795.1 | 77.5 | 386 | 87 | 0 | 1 | 386 | 54 | 439 | 1.10E-163 | 586.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23939.t1 | Q9S7T8 | 55.1 | 390 | 171 | 4 | 1 | 386 | 1 | 390 | 1.5e-118 | 427.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23939.t1 | G7IW05 | 77.5 | 386 | 87 | 0 | 1 | 386 | 1 | 386 | 7.7e-164 | 586.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene23939 | PPI |
| MS.gene23939 | MS.gene045585 | PPI |
| MS.gene031697 | MS.gene23939 | PPI |
| MS.gene23939 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene23939 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23939.t1 | MTR_3g018740 | 77.461 | 386 | 87 | 0 | 1 | 386 | 1 | 386 | 0.0 | 602 |
| MS.gene23939.t1 | MTR_3g101010 | 76.154 | 390 | 90 | 2 | 1 | 388 | 1 | 389 | 0.0 | 575 |
| MS.gene23939.t1 | MTR_2g045980 | 70.000 | 390 | 109 | 3 | 1 | 386 | 1 | 386 | 0.0 | 530 |
| MS.gene23939.t1 | MTR_4g045707 | 69.091 | 385 | 118 | 1 | 4 | 388 | 5 | 388 | 0.0 | 528 |
| MS.gene23939.t1 | MTR_2g046030 | 68.974 | 390 | 113 | 3 | 1 | 386 | 1 | 386 | 0.0 | 526 |
| MS.gene23939.t1 | MTR_8g027395 | 68.135 | 386 | 120 | 2 | 3 | 388 | 15 | 397 | 0.0 | 526 |
| MS.gene23939.t1 | MTR_3g101030 | 67.419 | 399 | 107 | 5 | 10 | 388 | 34 | 429 | 0.0 | 521 |
| MS.gene23939.t1 | MTR_8g461160 | 68.557 | 388 | 115 | 3 | 5 | 386 | 6 | 392 | 0.0 | 508 |
| MS.gene23939.t1 | MTR_3g101180 | 66.244 | 394 | 120 | 4 | 5 | 386 | 6 | 398 | 2.56e-180 | 507 |
| MS.gene23939.t1 | MTR_3g048000 | 67.363 | 383 | 103 | 5 | 6 | 386 | 28 | 390 | 6.89e-179 | 503 |
| MS.gene23939.t1 | MTR_8g027420 | 66.062 | 386 | 117 | 3 | 3 | 388 | 4 | 375 | 8.92e-179 | 502 |
| MS.gene23939.t1 | MTR_7g451890 | 63.520 | 392 | 136 | 3 | 3 | 388 | 12 | 402 | 2.93e-176 | 496 |
| MS.gene23939.t1 | MTR_7g050810 | 64.975 | 394 | 127 | 4 | 3 | 388 | 14 | 404 | 7.70e-176 | 496 |
| MS.gene23939.t1 | MTR_7g050750 | 63.265 | 392 | 137 | 3 | 3 | 388 | 6 | 396 | 7.49e-175 | 493 |
| MS.gene23939.t1 | MTR_7g047780 | 64.031 | 392 | 134 | 3 | 3 | 388 | 12 | 402 | 1.89e-173 | 489 |
| MS.gene23939.t1 | MTR_3g101130 | 63.706 | 394 | 132 | 4 | 1 | 388 | 1 | 389 | 1.04e-172 | 487 |
| MS.gene23939.t1 | MTR_4g088525 | 66.758 | 364 | 118 | 2 | 24 | 387 | 8 | 368 | 1.67e-171 | 483 |
| MS.gene23939.t1 | MTR_4g088535 | 66.227 | 379 | 109 | 4 | 5 | 383 | 7 | 366 | 2.76e-167 | 473 |
| MS.gene23939.t1 | MTR_3g015620 | 64.691 | 388 | 106 | 4 | 5 | 386 | 16 | 378 | 8.08e-162 | 459 |
| MS.gene23939.t1 | MTR_3g101050 | 64.508 | 386 | 109 | 6 | 8 | 386 | 32 | 396 | 5.68e-161 | 457 |
| MS.gene23939.t1 | MTR_3g102920 | 59.474 | 380 | 113 | 7 | 12 | 386 | 65 | 408 | 5.16e-142 | 410 |
| MS.gene23939.t1 | MTR_3g101190 | 55.928 | 388 | 95 | 7 | 1 | 388 | 1 | 312 | 3.14e-134 | 386 |
| MS.gene23939.t1 | MTR_3g018747 | 74.903 | 259 | 50 | 2 | 129 | 386 | 9 | 253 | 6.71e-134 | 384 |
| MS.gene23939.t1 | MTR_3g101200 | 55.412 | 388 | 143 | 4 | 3 | 386 | 29 | 390 | 5.86e-131 | 381 |
| MS.gene23939.t1 | MTR_3g111160 | 89.423 | 208 | 22 | 0 | 181 | 388 | 13 | 220 | 7.74e-128 | 367 |
| MS.gene23939.t1 | MTR_3g100995 | 68.898 | 254 | 75 | 2 | 136 | 388 | 14 | 264 | 7.05e-124 | 358 |
| MS.gene23939.t1 | MTR_7g050830 | 58.228 | 316 | 99 | 3 | 3 | 296 | 14 | 318 | 5.75e-120 | 351 |
| MS.gene23939.t1 | MTR_3g100010 | 58.387 | 310 | 81 | 4 | 30 | 306 | 42 | 336 | 1.73e-117 | 345 |
| MS.gene23939.t1 | MTR_3g015760 | 65.134 | 261 | 84 | 3 | 129 | 386 | 23 | 279 | 8.04e-107 | 316 |
| MS.gene23939.t1 | MTR_3g100520 | 63.182 | 220 | 69 | 2 | 170 | 388 | 1 | 209 | 1.02e-90 | 272 |
| MS.gene23939.t1 | MTR_3g111150 | 76.836 | 177 | 17 | 2 | 7 | 183 | 1 | 153 | 7.55e-88 | 263 |
| MS.gene23939.t1 | MTR_2g046410 | 67.317 | 205 | 62 | 2 | 186 | 386 | 144 | 347 | 2.08e-87 | 268 |
| MS.gene23939.t1 | MTR_3g101110 | 58.475 | 236 | 67 | 2 | 132 | 362 | 71 | 280 | 3.87e-84 | 258 |
| MS.gene23939.t1 | MTR_3g099970 | 63.500 | 200 | 55 | 2 | 126 | 325 | 17 | 198 | 2.33e-83 | 253 |
| MS.gene23939.t1 | MTR_3g114310 | 38.539 | 397 | 224 | 11 | 6 | 388 | 20 | 410 | 2.24e-78 | 248 |
| MS.gene23939.t1 | MTR_3g101020 | 58.289 | 187 | 50 | 2 | 203 | 388 | 1 | 160 | 1.95e-65 | 206 |
| MS.gene23939.t1 | MTR_3g102870 | 64.744 | 156 | 54 | 1 | 192 | 347 | 1 | 155 | 6.15e-65 | 205 |
| MS.gene23939.t1 | MTR_3g101150 | 63.291 | 158 | 51 | 3 | 235 | 386 | 1 | 157 | 1.11e-58 | 188 |
| MS.gene23939.t1 | MTR_3g100990 | 58.442 | 154 | 63 | 1 | 1 | 154 | 1 | 153 | 1.37e-50 | 177 |
| MS.gene23939.t1 | MTR_4g093550 | 66.667 | 87 | 29 | 0 | 2 | 88 | 3 | 89 | 3.79e-31 | 114 |
| MS.gene23939.t1 | MTR_6g046890 | 61.905 | 84 | 29 | 1 | 13 | 96 | 7 | 87 | 4.79e-25 | 99.8 |
| MS.gene23939.t1 | MTR_3g101140 | 61.842 | 76 | 25 | 2 | 316 | 388 | 42 | 116 | 2.45e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23939.t1 | AT1G47710 | 55.128 | 390 | 171 | 4 | 1 | 386 | 1 | 390 | 2.09e-153 | 438 |
| MS.gene23939.t1 | AT1G47710 | 55.128 | 390 | 171 | 4 | 1 | 386 | 28 | 417 | 1.56e-152 | 437 |
| MS.gene23939.t1 | AT3G45220 | 49.239 | 394 | 187 | 5 | 1 | 385 | 1 | 390 | 4.03e-129 | 377 |
| MS.gene23939.t1 | AT2G25240 | 49.614 | 389 | 185 | 6 | 1 | 385 | 1 | 382 | 3.50e-126 | 369 |
| MS.gene23939.t1 | AT2G26390 | 49.875 | 401 | 170 | 8 | 1 | 385 | 1 | 386 | 6.83e-126 | 368 |
| MS.gene23939.t1 | AT1G64030 | 45.178 | 394 | 184 | 7 | 1 | 385 | 1 | 371 | 3.09e-105 | 315 |
| MS.gene23939.t1 | AT2G14540 | 44.133 | 392 | 189 | 6 | 1 | 385 | 29 | 397 | 1.67e-103 | 312 |
| MS.gene23939.t1 | AT1G62170 | 42.278 | 395 | 193 | 6 | 1 | 385 | 62 | 431 | 6.67e-100 | 303 |
| MS.gene23939.t1 | AT2G35580 | 44.110 | 399 | 181 | 11 | 1 | 385 | 1 | 371 | 5.69e-99 | 299 |
| MS.gene23939.t1 | AT1G62170 | 39.019 | 428 | 193 | 7 | 1 | 385 | 62 | 464 | 3.18e-93 | 287 |
| MS.gene23939.t1 | AT1G64010 | 47.926 | 217 | 90 | 2 | 170 | 385 | 1 | 195 | 3.79e-65 | 206 |
| MS.gene23939.t1 | AT1G64010 | 47.030 | 202 | 84 | 2 | 185 | 385 | 2 | 181 | 1.67e-57 | 186 |
| MS.gene23939.t1 | AT1G63280 | 55.932 | 118 | 48 | 2 | 126 | 241 | 5 | 120 | 1.64e-37 | 132 |
| MS.gene23939.t1 | AT1G62160 | 42.000 | 200 | 87 | 4 | 192 | 385 | 42 | 218 | 4.06e-34 | 126 |
| MS.gene23939.t1 | AT1G51330 | 56.989 | 93 | 40 | 0 | 130 | 222 | 32 | 124 | 4.19e-29 | 112 |
| MS.gene23939.t1 | AT1G64020 | 33.929 | 112 | 71 | 3 | 10 | 119 | 10 | 120 | 1.31e-13 | 67.4 |
Find 78 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCATTGTACTTTAG+AGG | 0.228573 | 3.1:+88789788 | MS.gene23939:CDS |
| TTCACTTCCTTACGCACTTC+TGG | 0.250709 | 3.1:-88789680 | None:intergenic |
| TGAAGTCACGTACTTCCTTT+TGG | 0.264521 | 3.1:-88790090 | None:intergenic |
| TTATCTTCACCTTTCTTATA+AGG | 0.278181 | 3.1:-88789956 | None:intergenic |
| GTCTGACTATAAGGCCTCTT+TGG | 0.314575 | 3.1:+88789030 | MS.gene23939:CDS |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.316269 | 3.1:-88789730 | None:intergenic |
| GTTGAGATGATCAGTTGATT+TGG | 0.329351 | 3.1:-88788873 | None:intergenic |
| AATCGTGTCGTCTGACTATA+AGG | 0.332269 | 3.1:+88789021 | MS.gene23939:CDS |
| TTCTGAGTGAAACTCTTGTT+TGG | 0.381738 | 3.1:-88788715 | None:intergenic |
| CAGGTGCTCAATCCACTTAC+CGG | 0.382564 | 3.1:+88790430 | MS.gene23939:CDS |
| ACCGGAACAATCATCTTTGT+TGG | 0.389749 | 3.1:+88790406 | MS.gene23939:CDS |
| CTTCGTCTTCCTTATAAGAA+AGG | 0.393399 | 3.1:+88789947 | MS.gene23939:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.393434 | 3.1:+88790001 | MS.gene23939:CDS |
| CTTCTTATTGCTTGTCATGA+AGG | 0.402863 | 3.1:-88789891 | None:intergenic |
| TTCCGTTGATTTCATATTCA+AGG | 0.404811 | 3.1:+88789054 | MS.gene23939:CDS |
| TGACTGAGCTGCCATTTAGA+AGG | 0.423575 | 3.1:-88789862 | None:intergenic |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.426729 | 3.1:-88788994 | None:intergenic |
| TCTCCTTCGTCGATGGTGTA+TGG | 0.430979 | 3.1:+88788960 | MS.gene23939:CDS |
| GTGTAGGAACTCAGATTTAG+AGG | 0.438792 | 3.1:-88790050 | None:intergenic |
| GATGATCAGTTGATTTGGAT+TGG | 0.440085 | 3.1:-88788868 | None:intergenic |
| AACAATCATCTTTGTTGGAC+AGG | 0.440935 | 3.1:+88790411 | MS.gene23939:CDS |
| TGCGTAAGGAAGTGAACATA+TGG | 0.443212 | 3.1:+88789687 | MS.gene23939:CDS |
| CAACCTTTGTCTTTCCCAAA+AGG | 0.447489 | 3.1:+88790075 | MS.gene23939:CDS |
| CTCTCCGACGCTGCTCCTGC+CGG | 0.451849 | 3.1:+88788926 | MS.gene23939:CDS |
| TCCAACAAAGATGATTGTTC+CGG | 0.452329 | 3.1:-88790407 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.1:+88790271 | MS.gene23939:CDS |
| GTAAAACCTCCAGCTGAGAA+AGG | 0.471088 | 3.1:-88790184 | None:intergenic |
| GTGCTCAGCATGATCGCTGC+TGG | 0.475334 | 3.1:+88788806 | MS.gene23939:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.477583 | 3.1:-88788993 | None:intergenic |
| GAGTGAAACTCTTGTTTGGT+TGG | 0.477610 | 3.1:-88788711 | None:intergenic |
| CACCAAGATCACCCGGTAAG+TGG | 0.479483 | 3.1:-88790442 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3.1:-88790376 | None:intergenic |
| ATTAAAGAACTTCTTCCTCC+AGG | 0.485712 | 3.1:+88789734 | MS.gene23939:CDS |
| TTTGGTTGGTGATTGACTCA+TGG | 0.489862 | 3.1:-88788697 | None:intergenic |
| TTCTTATTGCTTGTCATGAA+GGG | 0.490256 | 3.1:-88789890 | None:intergenic |
| AGACGACACGATTTGCTTGA+AGG | 0.492806 | 3.1:-88789011 | None:intergenic |
| ATGATCGCTGCTGGCTCTGA+TGG | 0.495156 | 3.1:+88788815 | MS.gene23939:CDS |
| GTTAAGCTATCAACTGATCC+TGG | 0.502275 | 3.1:-88789752 | None:intergenic |
| TTTGGGAAAGACAAAGGTTG+TGG | 0.502972 | 3.1:-88790072 | None:intergenic |
| GAGAGTCGAGGTCCACCGGC+AGG | 0.505461 | 3.1:-88788941 | None:intergenic |
| ATGGTGGACTCTTCTCTTGT+GGG | 0.507953 | 3.1:+88790211 | MS.gene23939:CDS |
| GAAATATGTAAGTTACAGAA+AGG | 0.511718 | 3.1:-88790240 | None:intergenic |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3.1:-88790375 | None:intergenic |
| CTGATTAGAGAAGATTTGAC+CGG | 0.517828 | 3.1:+88790388 | MS.gene23939:CDS |
| CACTGCTGCAATATTATCCA+AGG | 0.518182 | 3.1:+88790312 | MS.gene23939:CDS |
| CCTCGACTCTCCTTCGTCGA+TGG | 0.525076 | 3.1:+88788953 | MS.gene23939:CDS |
| AGATGGAAAGCTAAAGCCCT+TGG | 0.532842 | 3.1:-88790329 | None:intergenic |
| GAAGGAGAGTCGAGGTCCAC+CGG | 0.533066 | 3.1:-88788945 | None:intergenic |
| TGAAACTTCTCGTATGCTAA+AGG | 0.534292 | 3.1:+88790144 | MS.gene23939:CDS |
| AGCACAACTTGCAGCGACAA+TGG | 0.534900 | 3.1:-88788788 | None:intergenic |
| GCTACAAAGTCTAGTTGAGA+TGG | 0.536062 | 3.1:-88790346 | None:intergenic |
| AAAGACAAAGGTTGTGGTGT+AGG | 0.536971 | 3.1:-88790066 | None:intergenic |
| AATGGTGGACTCTTCTCTTG+TGG | 0.543680 | 3.1:+88790210 | MS.gene23939:CDS |
| CATTGTACTTTAGAGGAGCA+TGG | 0.546324 | 3.1:+88789795 | MS.gene23939:CDS |
| GACACGATTTGCTTGAAGGA+AGG | 0.561491 | 3.1:-88789007 | None:intergenic |
| TCTCGTATGCTAAAGGAGCT+AGG | 0.570961 | 3.1:+88790151 | MS.gene23939:CDS |
| GATCAGTTGATTTGGATTGG+AGG | 0.573373 | 3.1:-88788865 | None:intergenic |
| TCCGACGCTGCTCCTGCCGG+TGG | 0.579915 | 3.1:+88788929 | MS.gene23939:CDS |
| TTAGGCTCCAGAAGTGCGTA+AGG | 0.581412 | 3.1:+88789673 | MS.gene23939:intron |
| TACCTTGAATATGAAATCAA+CGG | 0.585355 | 3.1:-88789056 | None:intergenic |
| TCTAAATGGCAGCTCAGTCA+AGG | 0.587482 | 3.1:+88789865 | MS.gene23939:CDS |
| CTTGGATAATATTGCAGCAG+TGG | 0.588147 | 3.1:-88790311 | None:intergenic |
| TCCACCGGCAGGAGCAGCGT+CGG | 0.589894 | 3.1:-88788930 | None:intergenic |
| GAAATCAACGGAAGCCAAAG+AGG | 0.593112 | 3.1:-88789044 | None:intergenic |
| GCGTAAGGAAGTGAACATAT+GGG | 0.600391 | 3.1:+88789688 | MS.gene23939:CDS |
| TCGAGAAGTTGCTGTCGTGT+AGG | 0.602586 | 3.1:-88788839 | None:intergenic |
| AGGTGCTCAATCCACTTACC+GGG | 0.607771 | 3.1:+88790431 | MS.gene23939:CDS |
| AGAAGGCGTTGAAGCTGCTG+CGG | 0.611204 | 3.1:+88790288 | MS.gene23939:CDS |
| CAGAAACAAGCTGTGAGGCG+AGG | 0.626579 | 3.1:-88788898 | None:intergenic |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3.1:-88790372 | None:intergenic |
| ACAATGCATTAGCAAAGATG+AGG | 0.643645 | 3.1:-88789778 | None:intergenic |
| TAGCGATCACCAAGATCACC+CGG | 0.654012 | 3.1:-88790449 | None:intergenic |
| ACTGCTGCAATATTATCCAA+GGG | 0.662517 | 3.1:+88790313 | MS.gene23939:CDS |
| TATCCATACACCATCGACGA+AGG | 0.669317 | 3.1:-88788963 | None:intergenic |
| AACAGCAGAAACAAGCTGTG+AGG | 0.672139 | 3.1:-88788903 | None:intergenic |
| TATGCTAAAGGAGCTAGGAG+TGG | 0.687565 | 3.1:+88790156 | MS.gene23939:CDS |
| AAGCTATCAACTGATCCTGG+AGG | 0.720518 | 3.1:-88789749 | None:intergenic |
| CCATCGACGAAGGAGAGTCG+AGG | 0.723381 | 3.1:-88788953 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATGTTAATTAACTAA+AGG | + | chr3.1:88789183-88789202 | MS.gene23939:intron | 15.0% |
| !!! | ATAATTACTGTTTTATTAGA+AGG | - | chr3.1:88789403-88789422 | None:intergenic | 15.0% |
| !!! | ATTGATTTTTGAATTTGATA+TGG | + | chr3.1:88789646-88789665 | MS.gene23939:intron | 15.0% |
| !!! | TCAAAAGAAATTTTGAATTT+CGG | - | chr3.1:88790121-88790140 | None:intergenic | 15.0% |
| !! | ATAACACGAAATAAAAATAG+CGG | - | chr3.1:88789121-88789140 | None:intergenic | 20.0% |
| !! | ATGAAATATATATGCAAAGT+CGG | - | chr3.1:88789170-88789189 | None:intergenic | 20.0% |
| !! | GAAAAAAATACATAGAGAAT+CGG | - | chr3.1:88789985-88790004 | None:intergenic | 20.0% |
| !! | TAAAAACTAATTGTTTGTGA+TGG | - | chr3.1:88789214-88789233 | None:intergenic | 20.0% |
| !!! | ACTCTATAAAATTTTTGAAG+AGG | - | chr3.1:88789492-88789511 | None:intergenic | 20.0% |
| !!! | TGAATTTGATATGGTTTTTT+AGG | + | chr3.1:88789655-88789674 | MS.gene23939:intron | 20.0% |
| !!! | TTATTTCGTGTTATTATTTG+TGG | + | chr3.1:88789127-88789146 | MS.gene23939:intron | 20.0% |
| !!! | TTTTATTTCATTAGCCAATT+TGG | + | chr3.1:88789240-88789259 | MS.gene23939:intron | 20.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | - | chr3.1:88790378-88790397 | None:intergenic | 25.0% |
| ! | GAAATATGTAAGTTACAGAA+AGG | - | chr3.1:88790243-88790262 | None:intergenic | 25.0% |
| ! | TACCTTGAATATGAAATCAA+CGG | - | chr3.1:88789059-88789078 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.1:88790379-88790398 | None:intergenic | 25.0% |
| ! | TGAAATATATATGCAAAGTC+GGG | - | chr3.1:88789169-88789188 | None:intergenic | 25.0% |
| ! | TGTTATTATTTGTGGTGTTT+CGG | + | chr3.1:88789135-88789154 | MS.gene23939:intron | 25.0% |
| ! | TTATCTTCACCTTTCTTATA+AGG | - | chr3.1:88789959-88789978 | None:intergenic | 25.0% |
| ! | TTATGCAAATAGATCATATG+AGG | - | chr3.1:88789627-88789646 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.1:88790271-88790290 | MS.gene23939:CDS | 25.0% |
| !! | AGATCTATCTTTAGAAACAT+TGG | - | chr3.1:88789368-88789387 | None:intergenic | 25.0% |
| !! | ATTGATTTCAGCACAAAATA+GGG | + | chr3.1:88789425-88789444 | MS.gene23939:intron | 25.0% |
| !! | TATGATTTTCACCTTCTAAA+TGG | + | chr3.1:88789851-88789870 | MS.gene23939:CDS | 25.0% |
| !!! | AAATCATTTTTGCTCCAAAT+TGG | - | chr3.1:88789257-88789276 | None:intergenic | 25.0% |
| !!! | TATTGATTTCAGCACAAAAT+AGG | + | chr3.1:88789424-88789443 | MS.gene23939:intron | 25.0% |
| !!! | TTGTTTTGAGAACAAATGTT+TGG | - | chr3.1:88788744-88788763 | None:intergenic | 25.0% |
| CTTGAAACATATTTCTTGAG+TGG | + | chr3.1:88789330-88789349 | MS.gene23939:intron | 30.0% | |
| GAAATATATATGCAAAGTCG+GGG | - | chr3.1:88789168-88789187 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.1:88789733-88789752 | None:intergenic | 30.0% | |
| GTTATTATTTGTGGTGTTTC+GGG | + | chr3.1:88789136-88789155 | MS.gene23939:intron | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | - | chr3.1:88790375-88790394 | None:intergenic | 30.0% | |
| TTCTTATTGCTTGTCATGAA+GGG | - | chr3.1:88789893-88789912 | None:intergenic | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.1:88790001-88790020 | MS.gene23939:CDS | 30.0% | |
| TTTCTTGATCCTTTAGCATA+TGG | + | chr3.1:88789528-88789547 | MS.gene23939:intron | 30.0% | |
| ! | GTCAGCTTTAATTGAAAAAG+TGG | + | chr3.1:88790027-88790046 | MS.gene23939:CDS | 30.0% |
| !! | AAAAATAGCGGATAGATTGT+AGG | - | chr3.1:88789109-88789128 | None:intergenic | 30.0% |
| !! | AAAATAGCGGATAGATTGTA+GGG | - | chr3.1:88789108-88789127 | None:intergenic | 30.0% |
| !! | TTCCGTTGATTTCATATTCA+AGG | + | chr3.1:88789054-88789073 | MS.gene23939:CDS | 30.0% |
| AACAATCATCTTTGTTGGAC+AGG | + | chr3.1:88790411-88790430 | MS.gene23939:CDS | 35.0% | |
| ACAATGCATTAGCAAAGATG+AGG | - | chr3.1:88789781-88789800 | None:intergenic | 35.0% | |
| ACTGCTGCAATATTATCCAA+GGG | + | chr3.1:88790313-88790332 | MS.gene23939:CDS | 35.0% | |
| AGCATACATAACCTTTGTGT+TGG | + | chr3.1:88789284-88789303 | MS.gene23939:intron | 35.0% | |
| ATTAAAGAACTTCTTCCTCC+AGG | + | chr3.1:88789734-88789753 | MS.gene23939:CDS | 35.0% | |
| ATTAGTGAAGACCAACACAA+AGG | - | chr3.1:88789298-88789317 | None:intergenic | 35.0% | |
| CTGATTAGAGAAGATTTGAC+CGG | + | chr3.1:88790388-88790407 | MS.gene23939:CDS | 35.0% | |
| CTTCGTCTTCCTTATAAGAA+AGG | + | chr3.1:88789947-88789966 | MS.gene23939:CDS | 35.0% | |
| CTTCTTATTGCTTGTCATGA+AGG | - | chr3.1:88789894-88789913 | None:intergenic | 35.0% | |
| GCTAATGCATTGTACTTTAG+AGG | + | chr3.1:88789788-88789807 | MS.gene23939:CDS | 35.0% | |
| GTTGAGATGATCAGTTGATT+TGG | - | chr3.1:88788876-88788895 | None:intergenic | 35.0% | |
| TCCAACAAAGATGATTGTTC+CGG | - | chr3.1:88790410-88790429 | None:intergenic | 35.0% | |
| TGAAACTTCTCGTATGCTAA+AGG | + | chr3.1:88790144-88790163 | MS.gene23939:CDS | 35.0% | |
| TTCTGAGTGAAACTCTTGTT+TGG | - | chr3.1:88788718-88788737 | None:intergenic | 35.0% | |
| ! | AGCTGGAGGTTTTACAAAAA+TGG | + | chr3.1:88790192-88790211 | MS.gene23939:CDS | 35.0% |
| ! | GACAATCCATCTTTTGCATT+TGG | - | chr3.1:88790010-88790029 | None:intergenic | 35.0% |
| ! | TGGAGGTTTTACAAAAATGG+TGG | + | chr3.1:88790195-88790214 | MS.gene23939:CDS | 35.0% |
| !! | GATGATCAGTTGATTTGGAT+TGG | - | chr3.1:88788871-88788890 | None:intergenic | 35.0% |
| AAAGACAAAGGTTGTGGTGT+AGG | - | chr3.1:88790069-88790088 | None:intergenic | 40.0% | |
| AATCGTGTCGTCTGACTATA+AGG | + | chr3.1:88789021-88789040 | MS.gene23939:CDS | 40.0% | |
| ACCGGAACAATCATCTTTGT+TGG | + | chr3.1:88790406-88790425 | MS.gene23939:CDS | 40.0% | |
| CAACCTTTGTCTTTCCCAAA+AGG | + | chr3.1:88790075-88790094 | MS.gene23939:CDS | 40.0% | |
| CACTGCTGCAATATTATCCA+AGG | + | chr3.1:88790312-88790331 | MS.gene23939:CDS | 40.0% | |
| CTTGGATAATATTGCAGCAG+TGG | - | chr3.1:88790314-88790333 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.1:88788996-88789015 | None:intergenic | 40.0% | |
| GCGTAAGGAAGTGAACATAT+GGG | + | chr3.1:88789688-88789707 | MS.gene23939:CDS | 40.0% | |
| GCTACAAAGTCTAGTTGAGA+TGG | - | chr3.1:88790349-88790368 | None:intergenic | 40.0% | |
| GTGTAGGAACTCAGATTTAG+AGG | - | chr3.1:88790053-88790072 | None:intergenic | 40.0% | |
| GTTAAGCTATCAACTGATCC+TGG | - | chr3.1:88789755-88789774 | None:intergenic | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.1:88788997-88789016 | None:intergenic | 40.0% | |
| TGCGTAAGGAAGTGAACATA+TGG | + | chr3.1:88789687-88789706 | MS.gene23939:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr3.1:88789707-88789726 | MS.gene23939:CDS | 40.0% | |
| TTTGGGAAAGACAAAGGTTG+TGG | - | chr3.1:88790075-88790094 | None:intergenic | 40.0% | |
| ! | CATTGTACTTTAGAGGAGCA+TGG | + | chr3.1:88789795-88789814 | MS.gene23939:CDS | 40.0% |
| ! | GAAGTCACGTACTTCCTTTT+GGG | - | chr3.1:88790092-88790111 | None:intergenic | 40.0% |
| ! | GAGTGAAACTCTTGTTTGGT+TGG | - | chr3.1:88788714-88788733 | None:intergenic | 40.0% |
| ! | TGAAGTCACGTACTTCCTTT+TGG | - | chr3.1:88790093-88790112 | None:intergenic | 40.0% |
| !! | CTTCCTTTTGGGAAAGACAA+AGG | - | chr3.1:88790081-88790100 | None:intergenic | 40.0% |
| !! | GATCAGTTGATTTGGATTGG+AGG | - | chr3.1:88788868-88788887 | None:intergenic | 40.0% |
| !! | TTTGGTTGGTGATTGACTCA+TGG | - | chr3.1:88788700-88788719 | None:intergenic | 40.0% |
| AACAGCAGAAACAAGCTGTG+AGG | - | chr3.1:88788906-88788925 | None:intergenic | 45.0% | |
| AAGCTATCAACTGATCCTGG+AGG | - | chr3.1:88789752-88789771 | None:intergenic | 45.0% | |
| AGATGGAAAGCTAAAGCCCT+TGG | - | chr3.1:88790332-88790351 | None:intergenic | 45.0% | |
| GAAATCAACGGAAGCCAAAG+AGG | - | chr3.1:88789047-88789066 | None:intergenic | 45.0% | |
| GTAAAACCTCCAGCTGAGAA+AGG | - | chr3.1:88790187-88790206 | None:intergenic | 45.0% | |
| GTCGATCAGCCATATGCTAA+AGG | - | chr3.1:88789540-88789559 | None:intergenic | 45.0% | |
| GTCTGACTATAAGGCCTCTT+TGG | + | chr3.1:88789030-88789049 | MS.gene23939:CDS | 45.0% | |
| TATCCATACACCATCGACGA+AGG | - | chr3.1:88788966-88788985 | None:intergenic | 45.0% | |
| TATGCTAAAGGAGCTAGGAG+TGG | + | chr3.1:88790156-88790175 | MS.gene23939:CDS | 45.0% | |
| TCTAAATGGCAGCTCAGTCA+AGG | + | chr3.1:88789865-88789884 | MS.gene23939:CDS | 45.0% | |
| TCTCGTATGCTAAAGGAGCT+AGG | + | chr3.1:88790151-88790170 | MS.gene23939:CDS | 45.0% | |
| TTCACTTCCTTACGCACTTC+TGG | - | chr3.1:88789683-88789702 | None:intergenic | 45.0% | |
| ! | AGACGACACGATTTGCTTGA+AGG | - | chr3.1:88789014-88789033 | None:intergenic | 45.0% |
| ! | GACACGATTTGCTTGAAGGA+AGG | - | chr3.1:88789010-88789029 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCTCAGCTGG+AGG | + | chr3.1:88790178-88790197 | MS.gene23939:CDS | 45.0% |
| ! | TGACTGAGCTGCCATTTAGA+AGG | - | chr3.1:88789865-88789884 | None:intergenic | 45.0% |
| !! | AATGGTGGACTCTTCTCTTG+TGG | + | chr3.1:88790210-88790229 | MS.gene23939:CDS | 45.0% |
| !! | ATGGTGGACTCTTCTCTTGT+GGG | + | chr3.1:88790211-88790230 | MS.gene23939:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCTCAGC+TGG | + | chr3.1:88790175-88790194 | MS.gene23939:CDS | 45.0% |
| AGCACAACTTGCAGCGACAA+TGG | - | chr3.1:88788791-88788810 | None:intergenic | 50.0% | |
| AGGTGCTCAATCCACTTACC+GGG | + | chr3.1:88790431-88790450 | MS.gene23939:CDS | 50.0% | |
| CAGGTGCTCAATCCACTTAC+CGG | + | chr3.1:88790430-88790449 | MS.gene23939:CDS | 50.0% | |
| TCGAGAAGTTGCTGTCGTGT+AGG | - | chr3.1:88788842-88788861 | None:intergenic | 50.0% | |
| TCTCCTTCGTCGATGGTGTA+TGG | + | chr3.1:88788960-88788979 | MS.gene23939:CDS | 50.0% | |
| ! | TTAGGCTCCAGAAGTGCGTA+AGG | + | chr3.1:88789673-88789692 | MS.gene23939:intron | 50.0% |
| CAGAAACAAGCTGTGAGGCG+AGG | - | chr3.1:88788901-88788920 | None:intergenic | 55.0% | |
| !! | AGAAGGCGTTGAAGCTGCTG+CGG | + | chr3.1:88790288-88790307 | MS.gene23939:CDS | 55.0% |
| !! | ATGATCGCTGCTGGCTCTGA+TGG | + | chr3.1:88788815-88788834 | MS.gene23939:CDS | 55.0% |
| CCATCGACGAAGGAGAGTCG+AGG | - | chr3.1:88788956-88788975 | None:intergenic | 60.0% | |
| CCTCGACTCTCCTTCGTCGA+TGG | + | chr3.1:88788953-88788972 | MS.gene23939:CDS | 60.0% | |
| GAAGGAGAGTCGAGGTCCAC+CGG | - | chr3.1:88788948-88788967 | None:intergenic | 60.0% | |
| GTGCTCAGCATGATCGCTGC+TGG | + | chr3.1:88788806-88788825 | MS.gene23939:CDS | 60.0% | |
| CTCTCCGACGCTGCTCCTGC+CGG | + | chr3.1:88788926-88788945 | MS.gene23939:CDS | 70.0% | |
| GAGAGTCGAGGTCCACCGGC+AGG | - | chr3.1:88788944-88788963 | None:intergenic | 70.0% | |
| TCCACCGGCAGGAGCAGCGT+CGG | - | chr3.1:88788933-88788952 | None:intergenic | 70.0% | |
| TCCGACGCTGCTCCTGCCGG+TGG | + | chr3.1:88788929-88788948 | MS.gene23939:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 88788689 | 88790456 | 88788689 | ID=MS.gene23939 |
| chr3.1 | mRNA | 88788689 | 88790456 | 88788689 | ID=MS.gene23939.t1;Parent=MS.gene23939 |
| chr3.1 | exon | 88788689 | 88789075 | 88788689 | ID=MS.gene23939.t1.exon1;Parent=MS.gene23939.t1 |
| chr3.1 | CDS | 88788689 | 88789075 | 88788689 | ID=cds.MS.gene23939.t1;Parent=MS.gene23939.t1 |
| chr3.1 | exon | 88789677 | 88790456 | 88789677 | ID=MS.gene23939.t1.exon2;Parent=MS.gene23939.t1 |
| chr3.1 | CDS | 88789677 | 88790456 | 88789677 | ID=cds.MS.gene23939.t1;Parent=MS.gene23939.t1 |
| Gene Sequence |
| Protein sequence |
