Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24033.t1 | XP_013468379.1 | 97.5 | 1439 | 36 | 0 | 1 | 1439 | 1 | 1439 | 0.00E+00 | 2580.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24033.t1 | Q8RWY6 | 72.3 | 1443 | 387 | 7 | 1 | 1436 | 1 | 1437 | 0.0e+00 | 1845.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24033.t1 | A0A072VLE8 | 97.5 | 1439 | 36 | 0 | 1 | 1439 | 1 | 1439 | 0.0e+00 | 2580.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053106 | MS.gene24033 | 0.813483 | 2.50E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24033.t1 | MTR_1g069165 | 97.915 | 1439 | 30 | 0 | 1 | 1439 | 1 | 1439 | 0.0 | 2913 |
MS.gene24033.t1 | MTR_7g099480 | 81.090 | 1449 | 264 | 5 | 1 | 1439 | 1 | 1449 | 0.0 | 2333 |
MS.gene24033.t1 | MTR_7g099480 | 80.262 | 1449 | 263 | 6 | 1 | 1439 | 1 | 1436 | 0.0 | 2295 |
MS.gene24033.t1 | MTR_1g069095 | 88.406 | 69 | 8 | 0 | 562 | 630 | 17 | 85 | 1.85e-31 | 119 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24033.t1 | AT2G20190 | 71.834 | 1445 | 390 | 9 | 1 | 1436 | 1 | 1437 | 0.0 | 2016 |
Find 313 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCGAGGAGTGCGCTGTTTA+AGG | 0.124398 | 1.3:+48420296 | None:intergenic |
CAATTACCTTCACTCGTTAT+TGG | 0.158735 | 1.3:-48420896 | MS.gene24033:CDS |
TCAGCTGATCGTTGTATTTC+TGG | 0.168372 | 1.3:+48423372 | None:intergenic |
CCTGCATTGTTTGAAGCTTT+TGG | 0.168454 | 1.3:-48417570 | MS.gene24033:CDS |
AATCTTTGGAAGCTTGAATT+TGG | 0.180104 | 1.3:+48421337 | None:intergenic |
ATTCATTGCATGCTTGTTAA+AGG | 0.217319 | 1.3:+48420516 | None:intergenic |
TGAGATTCGATTTGCATAAA+TGG | 0.223342 | 1.3:+48416919 | None:intergenic |
CGATAACTTGCCAGAATCTT+TGG | 0.223624 | 1.3:+48421323 | None:intergenic |
CCAGGTGACTCTGTTGTTAA+AGG | 0.224371 | 1.3:+48421420 | None:intergenic |
GAAAGCATTCTTGCCATATT+TGG | 0.241839 | 1.3:-48416975 | MS.gene24033:CDS |
TCATTACCTTCTCAAAATTC+TGG | 0.244866 | 1.3:+48420842 | None:intergenic |
TTTATAAAGATGGAAACTTT+AGG | 0.249342 | 1.3:-48421134 | MS.gene24033:CDS |
TTATAAAGATGGAAACTTTA+GGG | 0.265582 | 1.3:-48421133 | MS.gene24033:CDS |
CCATTTGAAGACTGAGCTTT+TGG | 0.272500 | 1.3:+48428913 | None:intergenic |
CATTACATTGGGAGATATTC+TGG | 0.275991 | 1.3:-48420148 | MS.gene24033:CDS |
GCTTGCCTAACAAGCTCTTT+GGG | 0.276677 | 1.3:+48420670 | None:intergenic |
ATATTGGCATCCTAAAATTA+TGG | 0.280769 | 1.3:-48420477 | MS.gene24033:CDS |
CCACGACCTCCCTTCTTCTT+TGG | 0.284767 | 1.3:-48429139 | MS.gene24033:intron |
CTGCTTAGTCCTTCCAAATA+TGG | 0.292046 | 1.3:+48416962 | None:intergenic |
AATAGTGGCCTCTGAAAATT+AGG | 0.293085 | 1.3:+48421090 | None:intergenic |
GAGAATCGAACGTCTTGTTT+TGG | 0.297893 | 1.3:-48427695 | MS.gene24033:CDS |
AAGCAGCACACAGTTGAAAT+TGG | 0.299215 | 1.3:-48416945 | MS.gene24033:CDS |
ATTCAAGCTTCCAAAGATTC+TGG | 0.302569 | 1.3:-48421333 | MS.gene24033:CDS |
CTTTAATCAGGTTCGAATCT+TGG | 0.304662 | 1.3:+48420086 | None:intergenic |
AACAACAGAGTCACCTGGTT+TGG | 0.311199 | 1.3:-48421415 | MS.gene24033:CDS |
TGCTTGCCTAACAAGCTCTT+TGG | 0.311833 | 1.3:+48420669 | None:intergenic |
CCATCTGATGTGGATGTTAA+TGG | 0.315828 | 1.3:-48419869 | MS.gene24033:CDS |
CCGGAAGGTGCTGCAAATAT+TGG | 0.317521 | 1.3:-48420493 | MS.gene24033:CDS |
CCAATATTTGCAGCACCTTC+CGG | 0.328268 | 1.3:+48420493 | None:intergenic |
GCAGGGTGCGCTTCAAGCTT+TGG | 0.330576 | 1.3:-48432539 | MS.gene24033:CDS |
TCAGATAGTTGTGTGCTTAA+TGG | 0.334263 | 1.3:+48426734 | None:intergenic |
TGCTCTGCGATCTTCAAGTT+TGG | 0.338940 | 1.3:-48421665 | MS.gene24033:CDS |
GCTCTTTCAACAATTATTGT+AGG | 0.339649 | 1.3:+48429850 | None:intergenic |
GTAGCTGCACGCGTGTCTTC+TGG | 0.345331 | 1.3:-48421057 | MS.gene24033:CDS |
AAGGTCTCCAAAGGCTAAAT+TGG | 0.346396 | 1.3:-48420563 | MS.gene24033:CDS |
ATAACAGCCAATTTAGCCTT+TGG | 0.347639 | 1.3:+48420556 | None:intergenic |
ACACATACCCTTTGAATAGA+AGG | 0.347792 | 1.3:+48422084 | None:intergenic |
CAATGTGGATAGGCAGTATA+TGG | 0.349075 | 1.3:-48421163 | MS.gene24033:CDS |
CCGGCGGTTGTTGATCGGTT+GGG | 0.351427 | 1.3:-48432460 | MS.gene24033:CDS |
CGGCGGTTGTTGATCGGTTG+GGG | 0.354470 | 1.3:-48432459 | MS.gene24033:CDS |
GATAGGTTCAATGCCTTTCT+CGG | 0.357239 | 1.3:+48427816 | None:intergenic |
TCATTTCAATGCGCTTGTTC+CGG | 0.359713 | 1.3:-48432479 | MS.gene24033:CDS |
AAGGGTCAAAGGATGAAAAT+AGG | 0.362833 | 1.3:+48422103 | None:intergenic |
GATTGTGGGGCGGCTCTCTC+AGG | 0.364925 | 1.3:-48417625 | MS.gene24033:CDS |
GCAAGCATGCTCTACGACTT+TGG | 0.365976 | 1.3:-48420653 | MS.gene24033:CDS |
CGATCTTCAAGTTTGGATCT+AGG | 0.366039 | 1.3:-48421658 | MS.gene24033:intron |
GCTATTGAGAGCATGCTTAG+AGG | 0.366124 | 1.3:-48421718 | MS.gene24033:CDS |
TTCTCCGAATACACCTTGAT+AGG | 0.368292 | 1.3:+48427799 | None:intergenic |
CTGAAACAGCAGCAGGGAAT+GGG | 0.372574 | 1.3:+48421463 | None:intergenic |
CAGGTTCTGACTGGTCTGCC+AGG | 0.372994 | 1.3:-48420930 | MS.gene24033:CDS |
ATCTTTGGAAGCTTGAATTT+GGG | 0.374481 | 1.3:+48421338 | None:intergenic |
GACAGTGTAAGCAAGATCTT+TGG | 0.376905 | 1.3:+48419970 | None:intergenic |
CGTTGTATTTCTGGTGCATC+AGG | 0.379467 | 1.3:+48423381 | None:intergenic |
AAGGTCTACCATTGTGAAAC+AGG | 0.380415 | 1.3:-48426708 | MS.gene24033:intron |
GCTTCAACTCCTAATCTATC+TGG | 0.380863 | 1.3:-48421901 | MS.gene24033:CDS |
TGCACAAAATAGCTGCTTCC+CGG | 0.381583 | 1.3:+48429571 | None:intergenic |
TTTAATCAGGTTCGAATCTT+GGG | 0.384132 | 1.3:+48420087 | None:intergenic |
ACAACAGAGTCACCTGGTTT+GGG | 0.384351 | 1.3:-48421414 | MS.gene24033:CDS |
TTGACCCCAAAGAGCTTGTT+AGG | 0.386531 | 1.3:-48420675 | MS.gene24033:CDS |
TATTCCTCAAATTCTTCATA+TGG | 0.389611 | 1.3:-48419726 | MS.gene24033:intron |
GATTCAATGGATCAAAACTT+TGG | 0.390826 | 1.3:-48419947 | MS.gene24033:CDS |
TATGATAAGGTGTTGTGTTT+CGG | 0.391872 | 1.3:-48423337 | MS.gene24033:CDS |
CTTCTAGCAGCATCTCTAAC+AGG | 0.391986 | 1.3:+48432424 | None:intergenic |
ACTCCTAATCTATCTGGTTA+TGG | 0.395465 | 1.3:-48421895 | MS.gene24033:CDS |
GCTACGTTCTTTCTTAATAG+TGG | 0.396267 | 1.3:+48421075 | None:intergenic |
GGCCACGACTGGCTTTAATC+AGG | 0.397528 | 1.3:+48420074 | None:intergenic |
TGAACCTATCAAGGTGTATT+CGG | 0.397599 | 1.3:-48427803 | MS.gene24033:CDS |
TTTCATCATACACAAGTAAG+AGG | 0.397717 | 1.3:-48421263 | MS.gene24033:CDS |
TGTAACCTTCAAATGGCTTT+CGG | 0.397798 | 1.3:+48420734 | None:intergenic |
CAGGTGACTCTGTTGTTAAA+GGG | 0.398746 | 1.3:+48421421 | None:intergenic |
GACGCAAAGGAACGCATGGC+AGG | 0.402496 | 1.3:-48432679 | MS.gene24033:CDS |
CGAAGCTGGTTGGCCACGAC+TGG | 0.405171 | 1.3:+48420063 | None:intergenic |
GCGAGGAGTGCGCTGTTTAA+GGG | 0.406453 | 1.3:+48420297 | None:intergenic |
TGAGAGCATGCTTAGAGGCT+TGG | 0.407222 | 1.3:-48421713 | MS.gene24033:CDS |
TGCTTACACTGTCGATTCAA+TGG | 0.407718 | 1.3:-48419960 | MS.gene24033:CDS |
AAGCAAATGATCATTCTGTT+TGG | 0.408015 | 1.3:-48419332 | MS.gene24033:CDS |
CAGTCGTGGCCAACCAGCTT+CGG | 0.411534 | 1.3:-48420062 | MS.gene24033:CDS |
CTCTACGACTTTGGAGGCTG+TGG | 0.412649 | 1.3:-48420644 | MS.gene24033:CDS |
CTGAGTGAAGGACTTAGTTC+AGG | 0.413185 | 1.3:-48420949 | MS.gene24033:CDS |
GACCGTTGTGCTTGAGGTGC+TGG | 0.414056 | 1.3:-48418955 | MS.gene24033:CDS |
TCAGGTCATTATCCCTCTAC+TGG | 0.414745 | 1.3:-48418392 | MS.gene24033:intron |
TTCTAGAAGCTTCTAGAACT+TGG | 0.416007 | 1.3:+48432641 | None:intergenic |
TCCGGCGGTTGTTGATCGGT+TGG | 0.417340 | 1.3:-48432461 | MS.gene24033:CDS |
ATATACTGCCTATCCACATT+GGG | 0.421255 | 1.3:+48421165 | None:intergenic |
GTGGATATTTATATCATGCT+TGG | 0.422318 | 1.3:-48416998 | MS.gene24033:CDS |
ATCACTCGTCGATTGTTGCT+TGG | 0.422433 | 1.3:-48432593 | MS.gene24033:CDS |
TTGAACATTACCAAAGAAGA+AGG | 0.423104 | 1.3:+48429129 | None:intergenic |
TTGCATAAATTGCTTGACTA+AGG | 0.423762 | 1.3:-48418341 | MS.gene24033:intron |
AATTGTAATAGTGATATTGT+TGG | 0.425002 | 1.3:-48420001 | MS.gene24033:CDS |
TTGTTGCTTGGATCTCTTGA+AGG | 0.426169 | 1.3:-48432581 | MS.gene24033:CDS |
ATAGTGATGGTGGCAGGAAA+TGG | 0.426224 | 1.3:-48420114 | MS.gene24033:CDS |
TGATCATTCTGTTTGGATCC+AGG | 0.426875 | 1.3:-48419325 | MS.gene24033:intron |
GATAGTAGCATGAACTTTGA+AGG | 0.429549 | 1.3:-48419896 | MS.gene24033:CDS |
TGCTTCCCGGACAGCAGGAT+TGG | 0.438372 | 1.3:+48429584 | None:intergenic |
GCGATCCCAATCCTGCTGTC+CGG | 0.441584 | 1.3:-48429590 | MS.gene24033:CDS |
CGTTCCATGTAACCTTCAAA+TGG | 0.441625 | 1.3:+48420727 | None:intergenic |
ATGGATGCTCTTTATAAAGA+TGG | 0.442350 | 1.3:-48421144 | MS.gene24033:CDS |
CTTTGACCCTTCTATTCAAA+GGG | 0.442471 | 1.3:-48422091 | MS.gene24033:intron |
GTGAACTAATGGGGCTAACT+TGG | 0.442786 | 1.3:+48420450 | None:intergenic |
GTTATTGGAGCAAGGTCAAA+AGG | 0.443541 | 1.3:-48420881 | MS.gene24033:CDS |
TACTGAACTACCCCTTCAAC+GGG | 0.443723 | 1.3:-48429740 | MS.gene24033:CDS |
CTCACCATATGAAGAATTTG+AGG | 0.444451 | 1.3:+48419722 | None:intergenic |
GGAGTCCTAAAACAGCTTGT+TGG | 0.445362 | 1.3:-48426758 | MS.gene24033:CDS |
TGGATATTTATATCATGCTT+GGG | 0.448346 | 1.3:-48416997 | MS.gene24033:CDS |
ATTATTTCCCTTCAGATTGT+GGG | 0.452006 | 1.3:-48417639 | MS.gene24033:intron |
CGATCCCAATCCTGCTGTCC+GGG | 0.452338 | 1.3:-48429589 | MS.gene24033:CDS |
AGGGGTGGTCAGATGATTAG+AGG | 0.454155 | 1.3:+48421440 | None:intergenic |
AGAAAGATGTTCAAAGCCTT+CGG | 0.454499 | 1.3:+48419817 | None:intergenic |
GAAGGTGATGTCACCGAGAA+AGG | 0.454990 | 1.3:-48427829 | MS.gene24033:CDS |
GCTGAAACAGCAGCAGGGAA+TGG | 0.455146 | 1.3:+48421462 | None:intergenic |
CAGTATCCGGAACGGTGGTA+TGG | 0.458057 | 1.3:-48421379 | MS.gene24033:CDS |
TACATTATCAGATGGATCAT+AGG | 0.458373 | 1.3:+48420216 | None:intergenic |
GGCTTTCAAGCTGACCGACT+TGG | 0.461172 | 1.3:-48419926 | MS.gene24033:CDS |
ATTCGGAGAAGGAATTCATC+AGG | 0.461731 | 1.3:-48427786 | MS.gene24033:CDS |
CTAGAAAAGCACATTACATT+GGG | 0.462034 | 1.3:-48420159 | MS.gene24033:CDS |
AGAAATTCTAGTTTATCATC+GGG | 0.463153 | 1.3:-48421847 | MS.gene24033:CDS |
ATTTCTAGTGGTTATATCAC+TGG | 0.465472 | 1.3:-48428889 | MS.gene24033:CDS |
ATTAGGAGTTGAAGCTTGAC+TGG | 0.465486 | 1.3:+48421909 | None:intergenic |
GCTTCCCGGACAGCAGGATT+GGG | 0.465684 | 1.3:+48429585 | None:intergenic |
ACATGCCGAAAGCCATTTGA+AGG | 0.466049 | 1.3:-48420739 | MS.gene24033:CDS |
TTGTTCCGGCGGTTGTTGAT+CGG | 0.466426 | 1.3:-48432465 | MS.gene24033:CDS |
GTTCCATAACCAGATAGATT+AGG | 0.467252 | 1.3:+48421892 | None:intergenic |
CCTTTGACCCTTCTATTCAA+AGG | 0.471844 | 1.3:-48422092 | MS.gene24033:CDS |
CAGAAATTCTAGTTTATCAT+CGG | 0.472579 | 1.3:-48421848 | MS.gene24033:CDS |
ATCTACCCTTGTACCAGAAA+AGG | 0.475316 | 1.3:-48427746 | MS.gene24033:CDS |
CCAAAAGCTCAGTCTTCAAA+TGG | 0.477978 | 1.3:-48428913 | MS.gene24033:CDS |
GAGGAAGAATAGCCCGTTGA+AGG | 0.478849 | 1.3:+48429728 | None:intergenic |
CTTTCACAAGCCAAGTCACT+TGG | 0.479597 | 1.3:-48421799 | MS.gene24033:CDS |
CCAAAAGCTTCAAACAATGC+AGG | 0.481915 | 1.3:+48417570 | None:intergenic |
GTGTTGTGTTTCGGACGCAA+TGG | 0.482310 | 1.3:-48423328 | MS.gene24033:CDS |
TACAATAATTGTTGAAAGAG+CGG | 0.482583 | 1.3:-48429848 | MS.gene24033:CDS |
ACAAACCCATACCACCGTTC+CGG | 0.482926 | 1.3:+48421373 | None:intergenic |
AAGTTGCTCGTGTGCTTCCT+CGG | 0.483255 | 1.3:-48423559 | MS.gene24033:CDS |
CGAATCTCACATGCAAGGAC+AGG | 0.484968 | 1.3:-48416905 | MS.gene24033:CDS |
ACAATAATTGTTGAAAGAGC+GGG | 0.485190 | 1.3:-48429847 | MS.gene24033:CDS |
AGGTTCTGACTGGTCTGCCA+GGG | 0.485808 | 1.3:-48420929 | MS.gene24033:CDS |
TCCTCTGAAGAGGGATATGT+TGG | 0.487001 | 1.3:-48420187 | MS.gene24033:CDS |
TCTACACTTAAACATCTGAA+TGG | 0.488025 | 1.3:+48418515 | None:intergenic |
TTGATGAAAACAGTTACATC+CGG | 0.491445 | 1.3:-48421209 | MS.gene24033:CDS |
CCTGGTTTGGGCGTCAATAG+AGG | 0.492622 | 1.3:-48421402 | MS.gene24033:CDS |
TCTGAGATAAAACAATTGTC+AGG | 0.493217 | 1.3:+48418543 | None:intergenic |
GATGATAGTCACTTATCTGT+TGG | 0.496533 | 1.3:-48421018 | MS.gene24033:CDS |
AAGACTCTTGCTCACTCTCA+TGG | 0.496648 | 1.3:-48432404 | MS.gene24033:CDS |
TCTAGAAAAGCACATTACAT+TGG | 0.496864 | 1.3:-48420160 | MS.gene24033:CDS |
TCCTCAGTTTCATCCGAAGC+TGG | 0.497185 | 1.3:+48420049 | None:intergenic |
TAGAAGCTTCTAGAACTTGG+TGG | 0.498070 | 1.3:+48432644 | None:intergenic |
CAGGAAATGTATTCACAAGC+TGG | 0.498265 | 1.3:-48429189 | MS.gene24033:CDS |
TAACAAGCATGCAATGAATC+CGG | 0.499037 | 1.3:-48420512 | MS.gene24033:CDS |
TGTTGTGTTTCGGACGCAAT+GGG | 0.499272 | 1.3:-48423327 | MS.gene24033:CDS |
TCGGGGACTTCTATCTCCTC+TGG | 0.504362 | 1.3:-48421829 | MS.gene24033:CDS |
TCAAGAGAACGTAGCAATGC+GGG | 0.508608 | 1.3:+48420592 | None:intergenic |
ATAGCTGCTTCCCGGACAGC+AGG | 0.509856 | 1.3:+48429579 | None:intergenic |
CATATACTGCCTATCCACAT+TGG | 0.511096 | 1.3:+48421164 | None:intergenic |
AGGGCTTCATGAAGAGATGC+TGG | 0.516401 | 1.3:+48420970 | None:intergenic |
CTCTAGATAGTGATGGTGGC+AGG | 0.516871 | 1.3:-48420120 | MS.gene24033:CDS |
TTCTTGGGATTAGCATTCAA+AGG | 0.517866 | 1.3:+48428856 | None:intergenic |
TCATATACCGCCTAGTCTCC+CGG | 0.522524 | 1.3:+48421190 | None:intergenic |
TGAAACAGCAGCAGGGAATG+GGG | 0.524328 | 1.3:+48421464 | None:intergenic |
AACTTCAGCTATTGTTGCAA+TGG | 0.524607 | 1.3:-48421872 | MS.gene24033:CDS |
AATAGGCGACGGGAACGCTC+CGG | 0.525889 | 1.3:+48422120 | None:intergenic |
GCGTCAATAGAGGCAGTATC+CGG | 0.527753 | 1.3:-48421392 | MS.gene24033:CDS |
GCTTCTGCCGTTGTTCTCTC+CGG | 0.528512 | 1.3:-48432517 | MS.gene24033:CDS |
TATGATCCATCTGATAATGT+AGG | 0.529026 | 1.3:-48420214 | MS.gene24033:CDS |
GACTTAGTTCAGGTTCTGAC+TGG | 0.529168 | 1.3:-48420939 | MS.gene24033:CDS |
CGCAAAGGAACGCATGGCAG+GGG | 0.530233 | 1.3:-48432677 | MS.gene24033:CDS |
CAAGCCAAGTCACTTGGTAA+TGG | 0.530936 | 1.3:-48421793 | MS.gene24033:CDS |
TATATTAATGCTAGGCTAGA+GGG | 0.531374 | 1.3:-48428943 | MS.gene24033:CDS |
GAAAGGCATTGAACCTATCA+AGG | 0.532088 | 1.3:-48427812 | MS.gene24033:CDS |
AAGAGCAAGCTCTCTGATTG+AGG | 0.533744 | 1.3:+48418920 | None:intergenic |
CCAAAGAAGAAGGGAGGTCG+TGG | 0.534430 | 1.3:+48429139 | None:intergenic |
TAACGAGTGAAGGTAATTGA+AGG | 0.534963 | 1.3:+48420900 | None:intergenic |
CTTCACAATGGAGGAAGCAC+TGG | 0.535217 | 1.3:-48432719 | None:intergenic |
TGTCTGTGTAGATATGCAGT+GGG | 0.535325 | 1.3:-48419416 | MS.gene24033:intron |
TGTTTCGGACGCAATGGGCG+AGG | 0.535955 | 1.3:-48423322 | MS.gene24033:intron |
ACAGTTACATCCGGGAGACT+AGG | 0.537409 | 1.3:-48421200 | MS.gene24033:CDS |
CTACTGAACTACCCCTTCAA+CGG | 0.537708 | 1.3:-48429741 | MS.gene24033:CDS |
AAACAATGCAGGGAGAAATG+AGG | 0.537889 | 1.3:+48417581 | None:intergenic |
AAAGCCATTTGAAGGTTACA+TGG | 0.537923 | 1.3:-48420731 | MS.gene24033:CDS |
CAAGACGTTCGATTCTCTGC+AGG | 0.538026 | 1.3:+48427701 | None:intergenic |
CAGTTTCATCCGAAGCTGGT+TGG | 0.538545 | 1.3:+48420053 | None:intergenic |
AGTATCCGGAACGGTGGTAT+GGG | 0.543745 | 1.3:-48421378 | MS.gene24033:CDS |
TTAGAGGCTGAAACAGCAGC+AGG | 0.546251 | 1.3:+48421456 | None:intergenic |
GCATTCTTGCCATATTTGGA+AGG | 0.549962 | 1.3:-48416971 | MS.gene24033:CDS |
TTGTTTCCAGAAAGATGCCA+TGG | 0.550205 | 1.3:-48418738 | MS.gene24033:intron |
CACATACCCTTTGAATAGAA+GGG | 0.552446 | 1.3:+48422085 | None:intergenic |
TCTTCAAATGGTATTTCTAG+TGG | 0.552985 | 1.3:-48428901 | MS.gene24033:CDS |
AGGTGAAATATATTAATGCT+AGG | 0.553111 | 1.3:-48428951 | MS.gene24033:CDS |
GCTCTCTCAGGAGGAACTGA+TGG | 0.555375 | 1.3:-48417613 | MS.gene24033:CDS |
GAACATTTAAATATTGCCGA+AGG | 0.557366 | 1.3:-48419833 | MS.gene24033:CDS |
CAAAAGCTTCAAACAATGCA+GGG | 0.558776 | 1.3:+48417571 | None:intergenic |
GAAGGACGCAAAGGAACGCA+TGG | 0.559104 | 1.3:-48432683 | MS.gene24033:CDS |
CCTCTATTGACGCCCAAACC+AGG | 0.559407 | 1.3:+48421402 | None:intergenic |
TTTCAATGCGCTTGTTCCGG+CGG | 0.560004 | 1.3:-48432476 | MS.gene24033:CDS |
CTTCACTCGTTATTGGAGCA+AGG | 0.560390 | 1.3:-48420889 | MS.gene24033:CDS |
GAGATGTCAAATTATGCAGA+TGG | 0.560673 | 1.3:-48420994 | MS.gene24033:CDS |
TACGTTCTCTTGACGAACAA+AGG | 0.561024 | 1.3:-48420582 | MS.gene24033:CDS |
ACGCAAAGGAACGCATGGCA+GGG | 0.562340 | 1.3:-48432678 | MS.gene24033:CDS |
GGAAGAATAGCCCGTTGAAG+GGG | 0.562874 | 1.3:+48429730 | None:intergenic |
AAGAAGATGGAGGCAAACAT+AGG | 0.564426 | 1.3:-48421981 | MS.gene24033:CDS |
TGAACATTACCAAAGAAGAA+GGG | 0.565471 | 1.3:+48429130 | None:intergenic |
AAAGGCTAAAAGTTCATCAA+AGG | 0.565933 | 1.3:-48428824 | MS.gene24033:CDS |
CCTTTAACAACAGAGTCACC+TGG | 0.567160 | 1.3:-48421420 | MS.gene24033:CDS |
AACGTAGCAATGCGGGCAAG+AGG | 0.567385 | 1.3:+48420599 | None:intergenic |
GATATTGACCGTTGTGCTTG+AGG | 0.569910 | 1.3:-48418961 | MS.gene24033:CDS |
TGAAGGTTTGCCATCTGATG+TGG | 0.570068 | 1.3:-48419879 | MS.gene24033:CDS |
AACAATGCAGGGAGAAATGA+GGG | 0.571549 | 1.3:+48417582 | None:intergenic |
ATATGAACCCCAATGTGGAT+AGG | 0.575880 | 1.3:-48421173 | MS.gene24033:CDS |
AGATGGATCATAGGAAGACT+TGG | 0.576367 | 1.3:+48420225 | None:intergenic |
ACTTATACGAGGATATGATA+AGG | 0.576524 | 1.3:-48423350 | MS.gene24033:CDS |
CCCTTGTACCAGAAAAGGAC+TGG | 0.576763 | 1.3:-48427741 | MS.gene24033:CDS |
GCGTGTCTTCTGGTAGAAGA+AGG | 0.577836 | 1.3:-48421047 | MS.gene24033:CDS |
TATCAAGGTGTATTCGGAGA+AGG | 0.578869 | 1.3:-48427797 | MS.gene24033:CDS |
CCATTAACATCCACATCAGA+TGG | 0.579257 | 1.3:+48419869 | None:intergenic |
CAGTTAATAAATGAAGAAGA+TGG | 0.579873 | 1.3:-48421994 | MS.gene24033:CDS |
AGGAAGAATAGCCCGTTGAA+GGG | 0.580099 | 1.3:+48429729 | None:intergenic |
ACGAATAATATCTGCAAGTG+TGG | 0.583341 | 1.3:+48420762 | None:intergenic |
GTAATTGAAGGCAGAAACCC+TGG | 0.586113 | 1.3:+48420912 | None:intergenic |
GATGTTCCTACATTATCAGA+TGG | 0.586366 | 1.3:+48420208 | None:intergenic |
CTTCATGAAGCCCTGAGTGA+AGG | 0.589143 | 1.3:-48420961 | MS.gene24033:CDS |
TGTACCATTACCAAGTGACT+TGG | 0.589962 | 1.3:+48421789 | None:intergenic |
GTAGGAACATCCTCTGAAGA+GGG | 0.591027 | 1.3:-48420196 | MS.gene24033:CDS |
CGAACCGTGACATCTGCAAT+CGG | 0.591091 | 1.3:-48429775 | MS.gene24033:CDS |
TGTAGGAACATCCTCTGAAG+AGG | 0.591159 | 1.3:-48420197 | MS.gene24033:CDS |
TTGTCTGTGTAGATATGCAG+TGG | 0.591301 | 1.3:-48419417 | MS.gene24033:intron |
TCGTCCTCGGTAACCAGTAG+AGG | 0.591666 | 1.3:+48418379 | None:intergenic |
GGTGGTTCTCTAGATAGTGA+TGG | 0.593252 | 1.3:-48420127 | MS.gene24033:CDS |
ATGAAGCTTAAAATGATCGC+CGG | 0.593923 | 1.3:+48432498 | None:intergenic |
AAAGGATGAAAATAGGCGAC+GGG | 0.594792 | 1.3:+48422110 | None:intergenic |
CCTTTGAATAGAAGGGTCAA+AGG | 0.595153 | 1.3:+48422092 | None:intergenic |
GGCGGTTGTTGATCGGTTGG+GGG | 0.595732 | 1.3:-48432458 | MS.gene24033:CDS |
GGGGATCACGAGATGAGGGA+GGG | 0.596624 | 1.3:+48421484 | None:intergenic |
CCATCATAAAATTGCACATG+CGG | 0.597052 | 1.3:-48420791 | MS.gene24033:CDS |
CCCAACCGATCAACAACCGC+CGG | 0.598778 | 1.3:+48432460 | None:intergenic |
TTATTGGAGCAAGGTCAAAA+GGG | 0.599354 | 1.3:-48420880 | MS.gene24033:CDS |
AGGAAATGTATTCACAAGCT+GGG | 0.599792 | 1.3:-48429188 | MS.gene24033:CDS |
TGAGTCCTGTGTTTGTCATG+TGG | 0.600431 | 1.3:+48419750 | None:intergenic |
CTTGCCTAACAAGCTCTTTG+GGG | 0.601192 | 1.3:+48420671 | None:intergenic |
TGTGGGGCGGCTCTCTCAGG+AGG | 0.601681 | 1.3:-48417622 | MS.gene24033:CDS |
TCCCAAGAAAAGTAGTCCAA+AGG | 0.602354 | 1.3:-48428842 | MS.gene24033:CDS |
GAAACAGCAGCAGGGAATGG+GGG | 0.602928 | 1.3:+48421465 | None:intergenic |
CTGAACTAAGTCCTTCACTC+AGG | 0.603325 | 1.3:+48420950 | None:intergenic |
TTATTTCCCTTCAGATTGTG+GGG | 0.604820 | 1.3:-48417638 | MS.gene24033:intron |
TGGTGCACTTCTATCACGAA+TGG | 0.604974 | 1.3:+48421942 | None:intergenic |
ATTAAGTCTACTTCAATGCG+AGG | 0.607633 | 1.3:+48420280 | None:intergenic |
ATATTAATGCTAGGCTAGAG+GGG | 0.610650 | 1.3:-48428942 | MS.gene24033:CDS |
ACGTAGCAATGCGGGCAAGA+GGG | 0.611057 | 1.3:+48420600 | None:intergenic |
AGCATGCTCTACGACTTTGG+AGG | 0.613842 | 1.3:-48420650 | MS.gene24033:CDS |
ATATATTAATGCTAGGCTAG+AGG | 0.614694 | 1.3:-48428944 | MS.gene24033:CDS |
AGCACGCGCGAAGGACGCAA+AGG | 0.616457 | 1.3:-48432692 | MS.gene24033:CDS |
AGGTGACTCTGTTGTTAAAG+GGG | 0.616970 | 1.3:+48421422 | None:intergenic |
CTTGCTCCAATAACGAGTGA+AGG | 0.617821 | 1.3:+48420890 | None:intergenic |
CCAGAGTGCGGATATTCGTA+AGG | 0.618286 | 1.3:-48417544 | MS.gene24033:intron |
CCTTACGAATATCCGCACTC+TGG | 0.619470 | 1.3:+48417544 | None:intergenic |
AAGACGTTCGATTCTCTGCA+GGG | 0.620290 | 1.3:+48427702 | None:intergenic |
TTATCGTATAATAGCAACGT+TGG | 0.620799 | 1.3:-48421306 | MS.gene24033:CDS |
CGTCCTCGGTAACCAGTAGA+GGG | 0.620937 | 1.3:+48418380 | None:intergenic |
CAAAGGATGAAAATAGGCGA+CGG | 0.621556 | 1.3:+48422109 | None:intergenic |
GATAGGTGCGGTCAACTGCA+AGG | 0.621898 | 1.3:-48422173 | MS.gene24033:intron |
GCACTTCTATCACGAATGGA+AGG | 0.625563 | 1.3:+48421946 | None:intergenic |
TACGAAGGATACTGTTCCCA+AGG | 0.626055 | 1.3:-48418675 | MS.gene24033:intron |
ACTGGAACTAGCACGCGCGA+AGG | 0.626221 | 1.3:-48432701 | MS.gene24033:CDS |
TGACTCTGTTGTTAAAGGGG+TGG | 0.631386 | 1.3:+48421425 | None:intergenic |
TTCGGAGAAGGAATTCATCA+GGG | 0.632832 | 1.3:-48427785 | MS.gene24033:CDS |
TGATGAAAACAGTTACATCC+GGG | 0.633373 | 1.3:-48421208 | MS.gene24033:CDS |
TGACGAACAAAGGTCTCCAA+AGG | 0.635022 | 1.3:-48420572 | MS.gene24033:CDS |
TCTACGACTTTGGAGGCTGT+GGG | 0.636526 | 1.3:-48420643 | MS.gene24033:CDS |
ATGATCGCCGGAGAGAACAA+CGG | 0.638419 | 1.3:+48432510 | None:intergenic |
GCACACAACTATCTGATCGA+AGG | 0.639040 | 1.3:-48426727 | MS.gene24033:CDS |
TCACTCAGCTGAAGACGTGA+AGG | 0.640117 | 1.3:-48419777 | MS.gene24033:CDS |
TTTGCACAATCAACTATCCG+AGG | 0.640328 | 1.3:+48423542 | None:intergenic |
AGCTGACCGACTTGGATACG+TGG | 0.641471 | 1.3:-48419918 | MS.gene24033:CDS |
ATCTGCAAAACAAGAAAGAG+CGG | 0.643722 | 1.3:-48420252 | MS.gene24033:CDS |
ACCAGCTTCGGATGAAACTG+AGG | 0.644810 | 1.3:-48420050 | MS.gene24033:CDS |
TGAACTAAGTCCTTCACTCA+GGG | 0.645273 | 1.3:+48420951 | None:intergenic |
TTAATAAATGAAGAAGATGG+AGG | 0.648630 | 1.3:-48421991 | MS.gene24033:CDS |
ATCGACGAGTGATGAAACTT+CGG | 0.648728 | 1.3:+48432603 | None:intergenic |
TCTTCAGGTCTCAAACGAAG+CGG | 0.650958 | 1.3:-48418573 | MS.gene24033:intron |
AAAGCTGCTTAATGTTACGA+AGG | 0.651426 | 1.3:-48418690 | MS.gene24033:CDS |
GTCAACCACATGACAAACAC+AGG | 0.652740 | 1.3:-48419755 | MS.gene24033:CDS |
AAGCATGCAATGAATCCGGA+AGG | 0.654808 | 1.3:-48420508 | MS.gene24033:CDS |
TAGACCGATTGCAGATGTCA+CGG | 0.654881 | 1.3:+48429771 | None:intergenic |
GCAGTGCAATACTTCGTGCA+AGG | 0.662397 | 1.3:-48423511 | MS.gene24033:intron |
CAAATCGAATCTCACATGCA+AGG | 0.662437 | 1.3:-48416910 | MS.gene24033:CDS |
AACCTGATTAAAGCCAGTCG+TGG | 0.662903 | 1.3:-48420076 | MS.gene24033:CDS |
TACATTGGGAGATATTCTGG+TGG | 0.663979 | 1.3:-48420145 | MS.gene24033:CDS |
TACTATCCACGTATCCAAGT+CGG | 0.664568 | 1.3:+48419912 | None:intergenic |
ACCAACATATCCCTCTTCAG+AGG | 0.665572 | 1.3:+48420186 | None:intergenic |
GGTTCTCTAGATAGTGATGG+TGG | 0.666599 | 1.3:-48420124 | MS.gene24033:CDS |
CAATAATTGTTGAAAGAGCG+GGG | 0.667879 | 1.3:-48429846 | MS.gene24033:CDS |
ACTGCATGCAAGCAAACAGA+AGG | 0.668966 | 1.3:-48421746 | MS.gene24033:CDS |
GTCTGTGTAGATATGCAGTG+GGG | 0.669583 | 1.3:-48419415 | MS.gene24033:intron |
TAGAGGCTGAAACAGCAGCA+GGG | 0.672931 | 1.3:+48421457 | None:intergenic |
GTCAAGAGAACGTAGCAATG+CGG | 0.674735 | 1.3:+48420591 | None:intergenic |
TCAGAGCACCTGTTTCACAA+TGG | 0.675338 | 1.3:+48426700 | None:intergenic |
TTTCCCTTCAGATTGTGGGG+CGG | 0.678558 | 1.3:-48417635 | MS.gene24033:intron |
ATGCTTCAAAATCACCCAAG+AGG | 0.679266 | 1.3:+48423848 | None:intergenic |
GAAATTCTAGTTTATCATCG+GGG | 0.679560 | 1.3:-48421846 | MS.gene24033:CDS |
ATTAAACGAGAAAACACATG+AGG | 0.679998 | 1.3:+48420697 | None:intergenic |
TCTGTGTAGATATGCAGTGG+GGG | 0.690750 | 1.3:-48419414 | MS.gene24033:intron |
GAAGCACTATTTCAAGTAAG+CGG | 0.692353 | 1.3:-48419386 | MS.gene24033:CDS |
TATACTGCCTATCCACATTG+GGG | 0.692454 | 1.3:+48421166 | None:intergenic |
GCTTGACTGGAAGATGACAT+TGG | 0.695289 | 1.3:+48421922 | None:intergenic |
TTGTGAAAGAAGAACACCAG+AGG | 0.696856 | 1.3:+48421813 | None:intergenic |
ATCCAGCACCTCAAGCACAA+CGG | 0.698268 | 1.3:+48418953 | None:intergenic |
AGAGGCAGTATCCGGAACGG+TGG | 0.699152 | 1.3:-48421384 | MS.gene24033:CDS |
GCGGTATATGAACCCCAATG+TGG | 0.704015 | 1.3:-48421178 | MS.gene24033:CDS |
AATAGAGGCAGTATCCGGAA+CGG | 0.705699 | 1.3:-48421387 | MS.gene24033:CDS |
ACATTACCAAAGAAGAAGGG+AGG | 0.706777 | 1.3:+48429133 | None:intergenic |
GTTACATCCGGGAGACTAGG+CGG | 0.720518 | 1.3:-48421197 | MS.gene24033:CDS |
TATCCCTCTACTGGTTACCG+AGG | 0.724298 | 1.3:-48418383 | MS.gene24033:CDS |
ACTCTTGCTCACTCTCATGG+AGG | 0.745771 | 1.3:-48432401 | MS.gene24033:intron |
ACGATCAGCTGACTTATACG+AGG | 0.758181 | 1.3:-48423361 | MS.gene24033:CDS |
TTGCACGAAGTATTGCACTG+CGG | 0.851515 | 1.3:+48423513 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 48416877 | 48432734 | 48416877 | ID=MS.gene24033 |
chr1.3 | mRNA | 48416877 | 48432734 | 48416877 | ID=MS.gene24033.t1;Parent=MS.gene24033 |
chr1.3 | exon | 48432402 | 48432734 | 48432402 | ID=MS.gene24033.t1.exon1;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48432402 | 48432734 | 48432402 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48429726 | 48429881 | 48429726 | ID=MS.gene24033.t1.exon2;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48429726 | 48429881 | 48429726 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48429566 | 48429628 | 48429566 | ID=MS.gene24033.t1.exon3;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48429566 | 48429628 | 48429566 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48429140 | 48429208 | 48429140 | ID=MS.gene24033.t1.exon4;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48429140 | 48429208 | 48429140 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48428806 | 48428971 | 48428806 | ID=MS.gene24033.t1.exon5;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48428806 | 48428971 | 48428806 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48427692 | 48427853 | 48427692 | ID=MS.gene24033.t1.exon6;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48427692 | 48427853 | 48427692 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48426709 | 48426806 | 48426709 | ID=MS.gene24033.t1.exon7;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48426709 | 48426806 | 48426709 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48423828 | 48423902 | 48423828 | ID=MS.gene24033.t1.exon8;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48423828 | 48423902 | 48423828 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48423681 | 48423749 | 48423681 | ID=MS.gene24033.t1.exon9;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48423681 | 48423749 | 48423681 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48423512 | 48423597 | 48423512 | ID=MS.gene24033.t1.exon10;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48423512 | 48423597 | 48423512 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48423323 | 48423440 | 48423323 | ID=MS.gene24033.t1.exon11;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48423323 | 48423440 | 48423323 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48422092 | 48422190 | 48422092 | ID=MS.gene24033.t1.exon12;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48422092 | 48422190 | 48422092 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48421659 | 48422013 | 48421659 | ID=MS.gene24033.t1.exon13;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48421659 | 48422013 | 48421659 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48419727 | 48421513 | 48419727 | ID=MS.gene24033.t1.exon14;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48419727 | 48421513 | 48419727 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48419326 | 48419427 | 48419326 | ID=MS.gene24033.t1.exon15;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48419326 | 48419427 | 48419326 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48418890 | 48418994 | 48418890 | ID=MS.gene24033.t1.exon16;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48418890 | 48418994 | 48418890 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48418676 | 48418750 | 48418676 | ID=MS.gene24033.t1.exon17;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48418676 | 48418750 | 48418676 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48418520 | 48418588 | 48418520 | ID=MS.gene24033.t1.exon18;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48418520 | 48418588 | 48418520 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48418342 | 48418410 | 48418342 | ID=MS.gene24033.t1.exon19;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48418342 | 48418410 | 48418342 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48417545 | 48417646 | 48417545 | ID=MS.gene24033.t1.exon20;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48417545 | 48417646 | 48417545 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
chr1.3 | exon | 48416877 | 48417038 | 48416877 | ID=MS.gene24033.t1.exon21;Parent=MS.gene24033.t1 |
chr1.3 | CDS | 48416877 | 48417038 | 48416877 | ID=cds.MS.gene24033.t1;Parent=MS.gene24033.t1 |
Gene Sequence |
Protein sequence |