Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24090.t1 | XP_013466206.1 | 84 | 991 | 80 | 5 | 1 | 920 | 1 | 983 | 0.00E+00 | 1485.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24090.t1 | D5LXJ0 | 32.6 | 497 | 296 | 12 | 6 | 473 | 3 | 489 | 9.4e-50 | 200.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24090.t1 | A0A072VF72 | 84.0 | 991 | 80 | 5 | 1 | 920 | 1 | 983 | 0.0e+00 | 1485.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052309 | MS.gene24090 | 0.816546 | 5.23E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24090.t1 | MTR_1g026290 | 88.798 | 973 | 37 | 7 | 14 | 920 | 17 | 983 | 0.0 | 1646 |
| MS.gene24090.t1 | MTR_1g026290 | 88.332 | 977 | 38 | 7 | 14 | 920 | 17 | 987 | 0.0 | 1644 |
| MS.gene24090.t1 | MTR_1g026290 | 96.651 | 836 | 20 | 3 | 14 | 849 | 17 | 844 | 0.0 | 1591 |
| MS.gene24090.t1 | MTR_1g026290 | 96.651 | 836 | 20 | 3 | 14 | 849 | 17 | 844 | 0.0 | 1591 |
| MS.gene24090.t1 | MTR_1g026290 | 86.701 | 767 | 31 | 6 | 220 | 920 | 1 | 762 | 0.0 | 1244 |
| MS.gene24090.t1 | MTR_4g116370 | 34.615 | 520 | 279 | 16 | 10 | 493 | 19 | 513 | 2.68e-60 | 219 |
| MS.gene24090.t1 | MTR_4g116370 | 34.615 | 520 | 279 | 16 | 10 | 493 | 11 | 505 | 3.14e-60 | 219 |
| MS.gene24090.t1 | MTR_4g116370 | 33.201 | 503 | 277 | 16 | 29 | 493 | 10 | 491 | 3.25e-52 | 195 |
| MS.gene24090.t1 | MTR_4g116370 | 31.061 | 396 | 225 | 13 | 134 | 493 | 34 | 417 | 1.31e-30 | 129 |
| MS.gene24090.t1 | MTR_4g116370 | 33.569 | 283 | 160 | 9 | 234 | 493 | 58 | 335 | 4.03e-27 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24090.t1 | AT5G42220 | 46.113 | 952 | 405 | 27 | 1 | 919 | 1 | 877 | 0.0 | 659 |
| MS.gene24090.t1 | AT5G42220 | 46.113 | 952 | 405 | 27 | 1 | 919 | 1 | 877 | 0.0 | 659 |
| MS.gene24090.t1 | AT5G25270 | 34.988 | 423 | 225 | 14 | 24 | 429 | 20 | 409 | 5.74e-52 | 194 |
| MS.gene24090.t1 | AT5G11080 | 33.939 | 165 | 91 | 6 | 24 | 184 | 10 | 160 | 3.36e-13 | 72.4 |
| MS.gene24090.t1 | AT5G11080 | 33.939 | 165 | 91 | 6 | 24 | 184 | 10 | 160 | 6.80e-13 | 71.6 |
Find 282 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTCATCTGTGGGCTTTC+TGG | 0.145540 | 1.2:-109661 | None:intergenic |
| CTCTGTTCATTTACCTGTTC+AGG | 0.186974 | 1.2:-107166 | None:intergenic |
| CTTTCTTGTACAGGAATATT+TGG | 0.188581 | 1.2:+110998 | MS.gene24090:intron |
| GTAATATGGTTTCAGGTTAT+TGG | 0.197097 | 1.2:+103079 | MS.gene24090:intron |
| TGACAAACCTGCACCATTAT+AGG | 0.224010 | 1.2:-105386 | None:intergenic |
| TAATATGGTTTCAGGTTATT+GGG | 0.238705 | 1.2:+103080 | MS.gene24090:intron |
| AAGGGCTTCTGATGATCTTT+TGG | 0.244313 | 1.2:+110834 | MS.gene24090:CDS |
| GCAGGTTGGCAGTCAGGATA+TGG | 0.262907 | 1.2:+109504 | MS.gene24090:CDS |
| GGGTGCACTTCTACTTGAAC+TGG | 0.270093 | 1.2:+105187 | MS.gene24090:CDS |
| GAAGAAGTTTGTGCGGAATT+AGG | 0.272535 | 1.2:-103151 | None:intergenic |
| CCCTGCTAGTTGATTGCATT+TGG | 0.273481 | 1.2:-107117 | None:intergenic |
| AGGTTAGTTGAAGATATATT+TGG | 0.275645 | 1.2:-104153 | None:intergenic |
| GAGCCCGGTTCTGGTGATTC+AGG | 0.283347 | 1.2:+106698 | MS.gene24090:CDS |
| TCATTTACCTGTTCAGGTCT+TGG | 0.283401 | 1.2:-107160 | None:intergenic |
| AAGCTGCTCGAAGGACGTTC+TGG | 0.292892 | 1.2:+111044 | MS.gene24090:CDS |
| CTGTCAACCTGCTGGGCAAT+CGG | 0.292962 | 1.2:-109691 | None:intergenic |
| ACTAGCAGGGACTTGTCTTC+TGG | 0.308253 | 1.2:+107130 | MS.gene24090:CDS |
| CTTGTCCCTTCCCCATTGTT+TGG | 0.310487 | 1.2:-106659 | None:intergenic |
| CAGTCCAAGAGGAGCAGTTT+TGG | 0.314139 | 1.2:-107536 | None:intergenic |
| TATTACCAACAGAGTTTCTA+AGG | 0.317262 | 1.2:-106889 | None:intergenic |
| AGGAATTGCTATGCAGCATT+TGG | 0.319967 | 1.2:+105166 | MS.gene24090:CDS |
| ACCTGCACCATTATAGGATT+TGG | 0.321015 | 1.2:-105380 | None:intergenic |
| GGGTTAGATGGGAGAGTTGC+TGG | 0.327771 | 1.2:-106755 | None:intergenic |
| GCACCAATTGTTTCAGCAAT+TGG | 0.338308 | 1.2:+106629 | MS.gene24090:CDS |
| TCTTCAACTCCTGCAACTTT+AGG | 0.346394 | 1.2:+106475 | MS.gene24090:CDS |
| CACCGTAGTGAGCCCGGTTC+TGG | 0.349753 | 1.2:+106689 | MS.gene24090:CDS |
| CTTCAAACAAGCTCCTTGTT+TGG | 0.351103 | 1.2:+106439 | MS.gene24090:CDS |
| ATGAGTCGTTGCTGATTAAC+TGG | 0.353590 | 1.2:-102448 | None:intergenic |
| GAACATGCACTCTCTCAAAA+TGG | 0.354321 | 1.2:+104050 | MS.gene24090:CDS |
| ATGAGCGGACGTGGGGCTTC+CGG | 0.360117 | 1.2:+107202 | MS.gene24090:CDS |
| ACAACTTTGTAAATCTTGAT+TGG | 0.360242 | 1.2:-107431 | None:intergenic |
| GCAGTTTATATTTCTCCATC+AGG | 0.362139 | 1.2:+105356 | MS.gene24090:CDS |
| TAATGATGAGAGAGATGTTT+TGG | 0.365444 | 1.2:+107384 | MS.gene24090:CDS |
| TTGTGACTCTAGCATATTGC+AGG | 0.375677 | 1.2:+105071 | MS.gene24090:intron |
| TTTCACACAGTGTGGTTCTT+GGG | 0.376592 | 1.2:+102872 | MS.gene24090:CDS |
| GCTGCTGGCAGCACACCATC+TGG | 0.377689 | 1.2:+106791 | MS.gene24090:CDS |
| GGAGCACTTCCAACACCAAC+GGG | 0.378459 | 1.2:-106499 | None:intergenic |
| CAGTCAGAGTCAGTACAAAT+AGG | 0.378536 | 1.2:+105146 | MS.gene24090:CDS |
| CCTCTGCCCTCCTTCCGTTC+CGG | 0.379314 | 1.2:-109539 | None:intergenic |
| CCGATGCCAGAAGGGTTAGA+TGG | 0.380811 | 1.2:-106767 | None:intergenic |
| TTAATTTGATAAATGCTGAT+AGG | 0.382229 | 1.2:+109278 | MS.gene24090:CDS |
| AGATGACAATGGAGCTGAAT+CGG | 0.385957 | 1.2:-106843 | None:intergenic |
| GATCCGTCATCAGCACCTTT+AGG | 0.387358 | 1.2:-109169 | None:intergenic |
| GGCAACCCTTGTGTATTAGA+AGG | 0.388446 | 1.2:-104198 | None:intergenic |
| ATTTCACACAGTGTGGTTCT+TGG | 0.390711 | 1.2:+102871 | MS.gene24090:CDS |
| CTAAATAGTCCTGCTTTGAA+TGG | 0.397811 | 1.2:+109364 | MS.gene24090:CDS |
| TGCCCAGCAGGTTGGCAGTC+AGG | 0.400197 | 1.2:+109498 | MS.gene24090:CDS |
| TGTTGCAACGAGAGTCTTGC+CGG | 0.402364 | 1.2:+110865 | MS.gene24090:CDS |
| CGAACCTGAATCACCAGAAC+CGG | 0.412370 | 1.2:-106702 | None:intergenic |
| ATCAGGGCCAAATCCTATAA+TGG | 0.413483 | 1.2:+105373 | MS.gene24090:CDS |
| ACTCTCCCATCTAACCCTTC+TGG | 0.413671 | 1.2:+106761 | MS.gene24090:CDS |
| GTGCTCCTCGTAGCCGTGTT+GGG | 0.414635 | 1.2:+102845 | MS.gene24090:CDS |
| GCTGGTATGACATTTCTAAC+AGG | 0.415527 | 1.2:-106737 | None:intergenic |
| TTGTCTTTGAACAGCGAAAC+GGG | 0.418382 | 1.2:-102403 | None:intergenic |
| ACCTTCAACCAGTGGCTGAT+AGG | 0.418486 | 1.2:+110737 | MS.gene24090:CDS |
| ACCTTTAGGAGGTTGGAGTC+TGG | 0.421199 | 1.2:-109155 | None:intergenic |
| TTGTTCAGAAACATTGGTAC+TGG | 0.424220 | 1.2:-102185 | None:intergenic |
| ATCTGAACCAAGACCTGAAC+AGG | 0.426549 | 1.2:+107153 | MS.gene24090:CDS |
| AGGAAATCAAGCTGGAAATC+AGG | 0.426719 | 1.2:+103796 | MS.gene24090:CDS |
| GGTCAGCCCGATTGCCCAGC+AGG | 0.428555 | 1.2:+109684 | MS.gene24090:CDS |
| GGAATTGCTATGCAGCATTT+GGG | 0.432404 | 1.2:+105167 | MS.gene24090:CDS |
| GCTGGAAATCAGGCACCATC+TGG | 0.433495 | 1.2:+103806 | MS.gene24090:CDS |
| TATCCTGACTGCCAACCTGC+TGG | 0.435244 | 1.2:-109501 | None:intergenic |
| TTGACTCACCTGATGGCTTA+AGG | 0.438048 | 1.2:+109419 | MS.gene24090:CDS |
| CCAACGGGGCCTAAAGTTGC+AGG | 0.440187 | 1.2:-106484 | None:intergenic |
| GACAAAATTGCAACTGAAGT+AGG | 0.442503 | 1.2:+102421 | MS.gene24090:CDS |
| TTCGCAGTGTTAACATAGTT+CGG | 0.443754 | 1.2:-105211 | None:intergenic |
| GAATGGCCATACATTGCATT+TGG | 0.444494 | 1.2:+102625 | MS.gene24090:CDS |
| TCACTGCCGGACCCCGTAGC+AGG | 0.447048 | 1.2:-102677 | None:intergenic |
| CTTTGAATGGTTTGTTGGAA+GGG | 0.448136 | 1.2:+109377 | MS.gene24090:CDS |
| CCTGCCAAAACTGCTCCTCT+TGG | 0.448981 | 1.2:+107532 | MS.gene24090:CDS |
| CCTTCTGGCATCGGAGCTGC+TGG | 0.449331 | 1.2:+106776 | MS.gene24090:CDS |
| AAAGGAAACAATGTTGGATC+AGG | 0.451832 | 1.2:+102823 | MS.gene24090:intron |
| CAGACAGTGTGTTGAGGGAA+TGG | 0.453201 | 1.2:-104010 | None:intergenic |
| CGTACAGAACAGTTGCTTAG+TGG | 0.453630 | 1.2:+104252 | MS.gene24090:CDS |
| AGACAGTGTGTTGAGGGAAT+GGG | 0.453746 | 1.2:-104009 | None:intergenic |
| GTGTTGAGGGAATGGGGAAT+TGG | 0.453924 | 1.2:-104002 | None:intergenic |
| ACTGCGAATGGGACAGTCTT+CGG | 0.454831 | 1.2:+105226 | MS.gene24090:CDS |
| TCCTATCAGCCACTGGTTGA+AGG | 0.458836 | 1.2:-110738 | None:intergenic |
| TAATTCCGCACAAACTTCTT+CGG | 0.459355 | 1.2:+103153 | MS.gene24090:CDS |
| ACGGAAGGAGGGCAGAGGGG+TGG | 0.459563 | 1.2:+109544 | MS.gene24090:CDS |
| GAGCCAATTGCTGAAACAAT+TGG | 0.459970 | 1.2:-106632 | None:intergenic |
| AGCTGCTCGAAGGACGTTCT+GGG | 0.461367 | 1.2:+111045 | MS.gene24090:CDS |
| CAAAACTGCTCCTCTTGGAC+TGG | 0.461628 | 1.2:+107537 | MS.gene24090:CDS |
| TTCTTTCATCAATCAAAGTC+AGG | 0.461942 | 1.2:+109198 | MS.gene24090:CDS |
| TTTCCTTCAGTTTCGTTCCC+CGG | 0.463751 | 1.2:-103779 | None:intergenic |
| GAGGGAACTTCTGCTGATCT+AGG | 0.464850 | 1.2:+105107 | MS.gene24090:CDS |
| CTGACTACCGCTGGTGGGCA+AGG | 0.465410 | 1.2:-109311 | None:intergenic |
| CAAACAAGCTCCTTGTTTGG+CGG | 0.466746 | 1.2:+106442 | MS.gene24090:CDS |
| CAGAGTTTCTAAGGTGTGAC+TGG | 0.466854 | 1.2:-106880 | None:intergenic |
| GCAGGAGTGTGTGTCTGATT+TGG | 0.470969 | 1.2:-102659 | None:intergenic |
| GATATGGGGAATATGTTAAC+CGG | 0.471960 | 1.2:+109520 | MS.gene24090:CDS |
| GCAGAATCTGTTGTTAATGC+TGG | 0.472329 | 1.2:+105329 | MS.gene24090:CDS |
| ATGTGAATGTTTACGTTCCT+AGG | 0.472527 | 1.2:-106520 | None:intergenic |
| CATTTGAAAGGAAACAATGT+TGG | 0.473006 | 1.2:+102817 | MS.gene24090:intron |
| TTGGCTCTAGACCAAACAAT+GGG | 0.473293 | 1.2:+106648 | MS.gene24090:CDS |
| TGTCAGTCAGATTGCCCAGC+AGG | 0.474074 | 1.2:+109486 | MS.gene24090:CDS |
| TCATGTTGTTCAGATTCCTA+TGG | 0.474117 | 1.2:+103850 | MS.gene24090:CDS |
| CCATCTAACCCTTCTGGCAT+CGG | 0.474223 | 1.2:+106767 | MS.gene24090:CDS |
| CCCTTTCACTGCTAGACAGC+TGG | 0.474737 | 1.2:-110816 | None:intergenic |
| ACTTTAGGCCCCGTTGGTGT+TGG | 0.474796 | 1.2:+106490 | MS.gene24090:CDS |
| TTTCAACCAAATGCAATGTA+TGG | 0.475715 | 1.2:-102631 | None:intergenic |
| TCCTGCTTTGAATGGTTTGT+TGG | 0.475916 | 1.2:+109372 | MS.gene24090:CDS |
| AACTATGTTAACACTGCGAA+TGG | 0.476187 | 1.2:+105214 | MS.gene24090:CDS |
| TCTCGCCTTTCACTTGAAGA+TGG | 0.477787 | 1.2:-107499 | None:intergenic |
| CACACTCCTGCTACGGGGTC+CGG | 0.479486 | 1.2:+102671 | MS.gene24090:CDS |
| ACTTTGATTGATGAAAGAAC+TGG | 0.480329 | 1.2:-109194 | None:intergenic |
| AAAATATATTGCAAACACTC+GGG | 0.480549 | 1.2:+109239 | MS.gene24090:CDS |
| GCCAAATGCAATCAACTAGC+AGG | 0.482738 | 1.2:+107116 | MS.gene24090:CDS |
| GAGCTTGTTTGAAGTGGAAA+TGG | 0.485347 | 1.2:-106430 | None:intergenic |
| ACCGCGGAGATGAGCGGACG+TGG | 0.485367 | 1.2:+107193 | MS.gene24090:CDS |
| TGTCAACCTGCTGGGCAATC+GGG | 0.485522 | 1.2:-109690 | None:intergenic |
| GCATTTCTCAAGACATTACT+CGG | 0.487020 | 1.2:+102926 | MS.gene24090:CDS |
| GTTGGTTGCACTTCTGAAAG+TGG | 0.487800 | 1.2:+107235 | MS.gene24090:CDS |
| GGCTGACCATGTTCATCTGT+GGG | 0.487914 | 1.2:-109669 | None:intergenic |
| GTTCAGATTCCTATGGCTGC+GGG | 0.490634 | 1.2:+103857 | MS.gene24090:CDS |
| CCAGCAGCTCCGATGCCAGA+AGG | 0.490801 | 1.2:-106776 | None:intergenic |
| GTGGTTAGTGCTTCAAGTGT+TGG | 0.491485 | 1.2:-104219 | None:intergenic |
| ATCTCTCTCATCATTACTAC+AGG | 0.491809 | 1.2:-107377 | None:intergenic |
| CAGGTTGGCAGTCAGGATAT+GGG | 0.492293 | 1.2:+109505 | MS.gene24090:CDS |
| AATATATCTTCAACTAACCT+TGG | 0.492822 | 1.2:+104156 | MS.gene24090:CDS |
| CATCAGCACCTTTAGGAGGT+TGG | 0.493318 | 1.2:-109162 | None:intergenic |
| GCTTTGAATGGTTTGTTGGA+AGG | 0.495809 | 1.2:+109376 | MS.gene24090:CDS |
| TCAGACACACACTCCTGCTA+CGG | 0.495909 | 1.2:+102664 | MS.gene24090:CDS |
| CAGACACACACTCCTGCTAC+GGG | 0.497357 | 1.2:+102665 | MS.gene24090:CDS |
| AACATGCTCCTTAAGCCATC+AGG | 0.499359 | 1.2:-109427 | None:intergenic |
| AACAAGGAGCTTGTTTGAAG+TGG | 0.499575 | 1.2:-106436 | None:intergenic |
| CCGGAACGGAAGGAGGGCAG+AGG | 0.500044 | 1.2:+109539 | MS.gene24090:CDS |
| CCAGTTTGACCTTCAACCAG+TGG | 0.500150 | 1.2:+110729 | MS.gene24090:intron |
| ATTGTATCACAAGCCCTTGG+TGG | 0.501552 | 1.2:+109604 | MS.gene24090:CDS |
| GGTGCTCCTCGTAGCCGTGT+TGG | 0.503290 | 1.2:+102844 | MS.gene24090:CDS |
| GATGACAATGGAGCTGAATC+GGG | 0.503305 | 1.2:-106842 | None:intergenic |
| GCGAATCAATCTTCAAATGA+AGG | 0.505900 | 1.2:+102154 | MS.gene24090:CDS |
| ATTATAGGATTTGGCCCTGA+TGG | 0.508302 | 1.2:-105371 | None:intergenic |
| CGGAACGGAAGGAGGGCAGA+GGG | 0.509216 | 1.2:+109540 | MS.gene24090:CDS |
| CTGGTGATTCAGGTTCGACA+CGG | 0.513653 | 1.2:+106708 | MS.gene24090:CDS |
| TTTGTCTTTGAACAGCGAAA+CGG | 0.514925 | 1.2:-102404 | None:intergenic |
| GATTTACAAAGTTGTTCTAG+TGG | 0.515216 | 1.2:+107439 | MS.gene24090:CDS |
| ATCTGAACAACATGAGGAAA+CGG | 0.516291 | 1.2:-103842 | None:intergenic |
| TGTGGCGGGTTTAATGTCTC+AGG | 0.517663 | 1.2:+109339 | MS.gene24090:CDS |
| TGTTCAGATTCCTATGGCTG+CGG | 0.519569 | 1.2:+103856 | MS.gene24090:CDS |
| ACTGCATTGAAAGAAGGAAC+AGG | 0.520422 | 1.2:-103887 | None:intergenic |
| GAACACAGACAGTGTGTTGA+GGG | 0.521105 | 1.2:-104015 | None:intergenic |
| TCCACTAAAGATGTTGAGAA+TGG | 0.521526 | 1.2:+102608 | MS.gene24090:intron |
| ATTCCTACTGCATTGAAAGA+AGG | 0.523356 | 1.2:-103893 | None:intergenic |
| GTTCTTGGGACTATTAATGT+GGG | 0.523988 | 1.2:+102886 | MS.gene24090:CDS |
| GCCAAATCCTATAATGGTGC+AGG | 0.524609 | 1.2:+105379 | MS.gene24090:CDS |
| GGTTCTTGGGACTATTAATG+TGG | 0.525047 | 1.2:+102885 | MS.gene24090:CDS |
| CAAAATATATTGCAAACACT+CGG | 0.525718 | 1.2:+109238 | MS.gene24090:CDS |
| GGAACGGAAGGAGGGCAGAG+GGG | 0.527535 | 1.2:+109541 | MS.gene24090:CDS |
| TCCAGCTGTCTAGCAGTGAA+AGG | 0.528815 | 1.2:+110815 | MS.gene24090:CDS |
| ATCTTGTTGTTCAGAAACAT+TGG | 0.528977 | 1.2:-102191 | None:intergenic |
| GGGCTGACCATGTTCATCTG+TGG | 0.529144 | 1.2:-109670 | None:intergenic |
| TCTGCTGATCTAGGTGTAAG+AGG | 0.529800 | 1.2:+105116 | MS.gene24090:CDS |
| CCAAGGGCTTGTGATACAAT+GGG | 0.531514 | 1.2:-109601 | None:intergenic |
| GCTTCCGGTGTATCCTCAGT+TGG | 0.536156 | 1.2:+107217 | MS.gene24090:CDS |
| GATGGAGAAATATAAACTGC+TGG | 0.536793 | 1.2:-105353 | None:intergenic |
| GGGGTGGTGTTGACCTCTCA+AGG | 0.536912 | 1.2:+109560 | MS.gene24090:CDS |
| TGCAGGACGCATGGAGCGAG+AGG | 0.537065 | 1.2:+105088 | MS.gene24090:CDS |
| TGGTGATTCAGGTTCGACAC+GGG | 0.537877 | 1.2:+106709 | MS.gene24090:CDS |
| CGGTAGTCAGATTGATGTGG+CGG | 0.538847 | 1.2:+109324 | MS.gene24090:CDS |
| AAAACTGCTCCTCTTGGACT+GGG | 0.539076 | 1.2:+107538 | MS.gene24090:CDS |
| TTGTATCACAAGCCCTTGGT+GGG | 0.540065 | 1.2:+109605 | MS.gene24090:CDS |
| TGACAGTGTTCATCATCTGC+GGG | 0.540994 | 1.2:-109468 | None:intergenic |
| ACCAGACTCCAACCTCCTAA+AGG | 0.542230 | 1.2:+109154 | MS.gene24090:CDS |
| ACCAAGGGCTTGTGATACAA+TGG | 0.542806 | 1.2:-109602 | None:intergenic |
| AACTCTGTTGGTAATATGCA+AGG | 0.543610 | 1.2:+106896 | MS.gene24090:CDS |
| GAAACTGAAGGAAATCAAGC+TGG | 0.543666 | 1.2:+103788 | MS.gene24090:CDS |
| TAGGAGCATTCATTGTGCCC+TGG | 0.544651 | 1.2:-103132 | None:intergenic |
| AAATCAGGCACCATCTGGAC+AGG | 0.545938 | 1.2:+103811 | MS.gene24090:CDS |
| TGCACTAGCTGTCTCACTGC+CGG | 0.547750 | 1.2:-102690 | None:intergenic |
| GTCTGTGTTCATAAATCGCA+TGG | 0.548128 | 1.2:+104028 | MS.gene24090:CDS |
| ATCCTGACTGCCAACCTGCT+GGG | 0.548407 | 1.2:-109500 | None:intergenic |
| CTAGCATATTGCAGGACGCA+TGG | 0.549101 | 1.2:+105079 | MS.gene24090:intron |
| TGACTACCGCTGGTGGGCAA+GGG | 0.550222 | 1.2:-109310 | None:intergenic |
| ACTGAACACCGTAGTGAGCC+CGG | 0.552562 | 1.2:+106683 | MS.gene24090:CDS |
| ATCAATCTGACTACCGCTGG+TGG | 0.553084 | 1.2:-109317 | None:intergenic |
| GGTGCACTTCTACTTGAACT+GGG | 0.554167 | 1.2:+105188 | MS.gene24090:CDS |
| AGAAAGTGGACCGCCAAACA+AGG | 0.554785 | 1.2:-106452 | None:intergenic |
| TATGAGTGGTTTAGAGCGTA+AGG | 0.555258 | 1.2:+107561 | MS.gene24090:CDS |
| TTCTGAAAGTGGAGTAGAGA+AGG | 0.555816 | 1.2:+107246 | MS.gene24090:CDS |
| ACTATGTTAACACTGCGAAT+GGG | 0.555829 | 1.2:+105215 | MS.gene24090:CDS |
| AGATATCTGTAGGTGGACTC+AGG | 0.555870 | 1.2:-110768 | None:intergenic |
| CCAGCTGTCTAGCAGTGAAA+GGG | 0.556611 | 1.2:+110816 | MS.gene24090:CDS |
| TCAATCAAAGTCAGGAAACC+AGG | 0.557847 | 1.2:+109206 | MS.gene24090:CDS |
| GAACAACATGAGGAAACGGT+TGG | 0.558266 | 1.2:-103838 | None:intergenic |
| CCCATTGTATCACAAGCCCT+TGG | 0.558380 | 1.2:+109601 | MS.gene24090:CDS |
| ATTTGAAGATTGATTCGCCA+TGG | 0.560305 | 1.2:-102149 | None:intergenic |
| GGTTCTGTAGCAGAGAATAG+TGG | 0.560598 | 1.2:-109640 | None:intergenic |
| CGATCAATCCTATCAGCCAC+TGG | 0.564835 | 1.2:-110745 | None:intergenic |
| GTATCACAAGCCCTTGGTGG+GGG | 0.565830 | 1.2:+109607 | MS.gene24090:CDS |
| GCAGGAGTTGAAGAAGAAAG+TGG | 0.566669 | 1.2:-106466 | None:intergenic |
| CAGTTTATATTTCTCCATCA+GGG | 0.566861 | 1.2:+105357 | MS.gene24090:CDS |
| CGATGCCAGAAGGGTTAGAT+GGG | 0.567423 | 1.2:-106766 | None:intergenic |
| GACAGTGTGTTGAGGGAATG+GGG | 0.567926 | 1.2:-104008 | None:intergenic |
| ATCCTGACTGTCAACCTGCT+GGG | 0.568139 | 1.2:-109698 | None:intergenic |
| GGTATGGCTCCCGCAGCCAT+AGG | 0.569031 | 1.2:-103866 | None:intergenic |
| AGTCAGGAAACCAGGACAGA+TGG | 0.569397 | 1.2:+109214 | MS.gene24090:CDS |
| TTCTTGGGACTATTAATGTG+GGG | 0.569682 | 1.2:+102887 | MS.gene24090:CDS |
| AAATATATTGCAAACACTCG+GGG | 0.570038 | 1.2:+109240 | MS.gene24090:CDS |
| GGATACGATAGTGAGAAAGA+AGG | 0.570907 | 1.2:-102501 | None:intergenic |
| ATGTTAACCGGAACGGAAGG+AGG | 0.571880 | 1.2:+109532 | MS.gene24090:CDS |
| CACATCAATCTGACTACCGC+TGG | 0.573025 | 1.2:-109320 | None:intergenic |
| CCTCTTGGACTGGGTATGAG+TGG | 0.573762 | 1.2:+107547 | MS.gene24090:CDS |
| TCTTGGGACTATTAATGTGG+GGG | 0.574459 | 1.2:+102888 | MS.gene24090:CDS |
| GCTCGAAGGACGTTCTGGGA+GGG | 0.576177 | 1.2:+111049 | MS.gene24090:CDS |
| TCCAACAAACCATTCAAAGC+AGG | 0.577193 | 1.2:-109373 | None:intergenic |
| CTGACAGTGTTCATCATCTG+CGG | 0.578106 | 1.2:-109469 | None:intergenic |
| CCGTCATCAGCACCTTTAGG+AGG | 0.578916 | 1.2:-109166 | None:intergenic |
| TTGGTGTTGGAAGTGCTCCT+AGG | 0.580894 | 1.2:+106503 | MS.gene24090:CDS |
| CACCAGAACCGGGCTCACTA+CGG | 0.581466 | 1.2:-106691 | None:intergenic |
| ATGCTCCATCTTCAAGTGAA+AGG | 0.582046 | 1.2:+107494 | MS.gene24090:CDS |
| CCTGCAACTTTAGGCCCCGT+TGG | 0.585045 | 1.2:+106484 | MS.gene24090:CDS |
| ACGGGAGTTGACTCACCTGA+TGG | 0.587577 | 1.2:+109412 | MS.gene24090:CDS |
| CGCGGAGATGAGCGGACGTG+GGG | 0.588211 | 1.2:+107195 | MS.gene24090:CDS |
| TGAAACAATTGGTGCAAGAG+AGG | 0.589969 | 1.2:-106621 | None:intergenic |
| CCTTCAGTTTCGTTCCCCGG+TGG | 0.591488 | 1.2:-103776 | None:intergenic |
| CAGCGACCCTTGCCCACCAG+CGG | 0.592187 | 1.2:+109304 | MS.gene24090:CDS |
| TGTATCACAAGCCCTTGGTG+GGG | 0.593198 | 1.2:+109606 | MS.gene24090:CDS |
| CAAACAATGGGGAAGGGACA+AGG | 0.594079 | 1.2:+106660 | MS.gene24090:CDS |
| AATATGTTAACCGGAACGGA+AGG | 0.594563 | 1.2:+109529 | MS.gene24090:CDS |
| CAGCAGCTCCGATGCCAGAA+GGG | 0.595475 | 1.2:-106775 | None:intergenic |
| GGTAGTCAGATTGATGTGGC+GGG | 0.595486 | 1.2:+109325 | MS.gene24090:CDS |
| GTAGCAGAGAATAGTGGTGG+AGG | 0.597993 | 1.2:-109634 | None:intergenic |
| GTAAACATTCACATACATGC+TGG | 0.598953 | 1.2:+106529 | MS.gene24090:CDS |
| TGAACACAGACAGTGTGTTG+AGG | 0.599080 | 1.2:-104016 | None:intergenic |
| CCAAATGCAATCAACTAGCA+GGG | 0.599347 | 1.2:+107117 | MS.gene24090:CDS |
| CCTCCTAAAGGTGCTGATGA+CGG | 0.599760 | 1.2:+109166 | MS.gene24090:CDS |
| GGGGAATATGTTAACCGGAA+CGG | 0.601844 | 1.2:+109525 | MS.gene24090:CDS |
| GGTGATTCAGGTTCGACACG+GGG | 0.602931 | 1.2:+106710 | MS.gene24090:CDS |
| TCTAGACCAAACAATGGGGA+AGG | 0.604140 | 1.2:+106653 | MS.gene24090:CDS |
| ATTGAAAGAAGGAACAGGTA+TGG | 0.608235 | 1.2:-103882 | None:intergenic |
| AATATGGTTTCAGGTTATTG+GGG | 0.609927 | 1.2:+103081 | MS.gene24090:intron |
| TTGATTGATGAAAGAACTGG+AGG | 0.610446 | 1.2:-109191 | None:intergenic |
| CATTTCTCAAGACATTACTC+GGG | 0.611396 | 1.2:+102927 | MS.gene24090:CDS |
| AGGAGCACTTCCAACACCAA+CGG | 0.613156 | 1.2:-106500 | None:intergenic |
| AGTCAGATTGCCCAGCAGGT+TGG | 0.619153 | 1.2:+109490 | MS.gene24090:CDS |
| AGGTTGGCAGTCAGGATATG+GGG | 0.622013 | 1.2:+109506 | MS.gene24090:CDS |
| ATCGGGTGGTAGCTGTGAAG+TGG | 0.627292 | 1.2:-106825 | None:intergenic |
| TCTGTTGAAGCATCCTTGAG+AGG | 0.630215 | 1.2:-109573 | None:intergenic |
| ATAGGAATCTGAACAACATG+AGG | 0.630849 | 1.2:-103848 | None:intergenic |
| CCACTCATACCCAGTCCAAG+AGG | 0.633234 | 1.2:-107547 | None:intergenic |
| TGTTAACCGGAACGGAAGGA+GGG | 0.633672 | 1.2:+109533 | MS.gene24090:CDS |
| TTCAGAAGTGCAACCAACTG+AGG | 0.633745 | 1.2:-107230 | None:intergenic |
| GGTTGGAATGCCTGTCCAGA+TGG | 0.633876 | 1.2:-103821 | None:intergenic |
| TGGGCAAATTTCACACAGTG+TGG | 0.634556 | 1.2:+102864 | MS.gene24090:CDS |
| GAACCTGAATCACCAGAACC+GGG | 0.636088 | 1.2:-106701 | None:intergenic |
| ATTCTGCTCGTTGATCTCCA+AGG | 0.637073 | 1.2:-104173 | None:intergenic |
| CCGCGGAGATGAGCGGACGT+GGG | 0.638934 | 1.2:+107194 | MS.gene24090:CDS |
| CCACCGGGGAACGAAACTGA+AGG | 0.639658 | 1.2:+103776 | MS.gene24090:CDS |
| TGCTCGAAGGACGTTCTGGG+AGG | 0.640302 | 1.2:+111048 | MS.gene24090:CDS |
| GAATTGCCTTCTAATACACA+AGG | 0.641086 | 1.2:+104192 | MS.gene24090:CDS |
| CTGGTGGGCAAGGGTCGCTG+AGG | 0.641101 | 1.2:-109301 | None:intergenic |
| ACAGCACGGAAGATATCTGT+AGG | 0.645362 | 1.2:-110778 | None:intergenic |
| TCAGCTAAAACAGATGACAA+TGG | 0.645638 | 1.2:-106854 | None:intergenic |
| TGTGTGAAATTTGCCCAACA+CGG | 0.647094 | 1.2:-102858 | None:intergenic |
| TCAATCTGACTACCGCTGGT+GGG | 0.647138 | 1.2:-109316 | None:intergenic |
| GATGTAAGTAAGCTGCTCGA+AGG | 0.650206 | 1.2:+111035 | MS.gene24090:CDS |
| AGAGATACCGCGGAGATGAG+CGG | 0.652439 | 1.2:+107187 | MS.gene24090:CDS |
| ATTGGCTCTAGACCAAACAA+TGG | 0.655176 | 1.2:+106647 | MS.gene24090:CDS |
| TCTGTAGCAGAGAATAGTGG+TGG | 0.656147 | 1.2:-109637 | None:intergenic |
| CAGCGGTAGTCAGATTGATG+TGG | 0.657434 | 1.2:+109321 | MS.gene24090:CDS |
| AGAAAGCCCACAGATGAACA+TGG | 0.659366 | 1.2:+109663 | MS.gene24090:CDS |
| GCAGGACGCATGGAGCGAGA+GGG | 0.662033 | 1.2:+105089 | MS.gene24090:CDS |
| CTAGACCAAACAATGGGGAA+GGG | 0.662121 | 1.2:+106654 | MS.gene24090:CDS |
| TCACACCTTAGAAACTCTGT+TGG | 0.665440 | 1.2:+106884 | MS.gene24090:CDS |
| CCCACGTCCGCTCATCTCCG+CGG | 0.669954 | 1.2:-107194 | None:intergenic |
| GACAATGGAGCTGAATCGGG+TGG | 0.672692 | 1.2:-106839 | None:intergenic |
| GCAACCAACTGAGGATACAC+CGG | 0.678404 | 1.2:-107221 | None:intergenic |
| ACTGACCGAAGAAGTTTGTG+CGG | 0.679232 | 1.2:-103158 | None:intergenic |
| GCTAGTGCAAATAGTAACCG+AGG | 0.687450 | 1.2:+102704 | MS.gene24090:CDS |
| GCACGGAAGATATCTGTAGG+TGG | 0.700840 | 1.2:-110775 | None:intergenic |
| TCACAACCAGACCCAAACTG+AGG | 0.703188 | 1.2:+107345 | MS.gene24090:intron |
| AATATATTGCAAACACTCGG+GGG | 0.705829 | 1.2:+109241 | MS.gene24090:CDS |
| ATTTGCCCAACACGGCTACG+AGG | 0.706337 | 1.2:-102850 | None:intergenic |
| TTCTGTACGATGCAATACAG+TGG | 0.709351 | 1.2:-104238 | None:intergenic |
| GTGGAGATACTGAATCCAGA+TGG | 0.710982 | 1.2:-106806 | None:intergenic |
| AAATGAACAGAGAGATACCG+CGG | 0.715935 | 1.2:+107177 | MS.gene24090:CDS |
| AATTGCCTTCTAATACACAA+GGG | 0.735513 | 1.2:+104193 | MS.gene24090:CDS |
| TGGCTCTAGACCAAACAATG+GGG | 0.735668 | 1.2:+106649 | MS.gene24090:CDS |
| AGACACACACTCCTGCTACG+GGG | 0.754610 | 1.2:+102666 | MS.gene24090:CDS |
| GAGCACTTCCAACACCAACG+GGG | 0.778341 | 1.2:-106498 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 102151 | 111082 | 102151 | ID=MS.gene24090 |
| chr1.2 | mRNA | 102151 | 111082 | 102151 | ID=MS.gene24090.t1;Parent=MS.gene24090 |
| chr1.2 | exon | 102151 | 102282 | 102151 | ID=MS.gene24090.t1.exon1;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 102151 | 102282 | 102151 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 102400 | 102517 | 102400 | ID=MS.gene24090.t1.exon2;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 102400 | 102517 | 102400 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 102618 | 102725 | 102618 | ID=MS.gene24090.t1.exon3;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 102618 | 102725 | 102618 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 102827 | 102948 | 102827 | ID=MS.gene24090.t1.exon4;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 102827 | 102948 | 102827 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 103094 | 103174 | 103094 | ID=MS.gene24090.t1.exon5;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 103094 | 103174 | 103094 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 103773 | 103907 | 103773 | ID=MS.gene24090.t1.exon6;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 103773 | 103907 | 103773 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 104002 | 104071 | 104002 | ID=MS.gene24090.t1.exon7;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 104002 | 104071 | 104002 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 104145 | 104296 | 104145 | ID=MS.gene24090.t1.exon8;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 104145 | 104296 | 104145 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 105083 | 105247 | 105083 | ID=MS.gene24090.t1.exon9;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 105083 | 105247 | 105083 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 105329 | 105400 | 105329 | ID=MS.gene24090.t1.exon10;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 105329 | 105400 | 105329 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 106430 | 106550 | 106430 | ID=MS.gene24090.t1.exon11;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 106430 | 106550 | 106430 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 106618 | 106938 | 106618 | ID=MS.gene24090.t1.exon12;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 106618 | 106938 | 106618 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 107116 | 107267 | 107116 | ID=MS.gene24090.t1.exon13;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 107116 | 107267 | 107116 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 107355 | 107582 | 107355 | ID=MS.gene24090.t1.exon14;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 107355 | 107582 | 107355 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 109148 | 109705 | 109148 | ID=MS.gene24090.t1.exon15;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 109148 | 109705 | 109148 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 110733 | 110888 | 110733 | ID=MS.gene24090.t1.exon16;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 110733 | 110888 | 110733 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| chr1.2 | exon | 111011 | 111082 | 111011 | ID=MS.gene24090.t1.exon17;Parent=MS.gene24090.t1 |
| chr1.2 | CDS | 111011 | 111082 | 111011 | ID=cds.MS.gene24090.t1;Parent=MS.gene24090.t1 |
| Gene Sequence |
| Protein sequence |
