AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24243

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24243.t1 MTR_1g022485 96.615 325 11 0 1 325 35 359 0.0 655
MS.gene24243.t1 MTR_3g112160 70.732 328 84 2 1 325 4 322 1.25e-163 459
MS.gene24243.t1 MTR_3g112160 69.328 238 61 2 1 235 4 232 1.94e-111 323
MS.gene24243.t1 MTR_5g023110 34.054 185 115 4 134 316 141 320 4.00e-27 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24243.t1 AT1G75380 65.231 325 109 3 1 323 1 323 4.79e-159 447
MS.gene24243.t1 AT1G75380 65.231 325 109 3 1 323 1 323 4.79e-159 447
MS.gene24243.t1 AT1G75380 65.231 325 109 3 1 323 1 323 4.79e-159 447
MS.gene24243.t1 AT1G75380 65.231 325 109 3 1 323 1 323 4.79e-159 447
MS.gene24243.t1 AT1G19660 62.080 327 120 2 1 323 1 327 3.11e-151 428
MS.gene24243.t1 AT1G19660 62.080 327 120 2 1 323 1 327 3.11e-151 428
MS.gene24243.t1 AT1G19660 63.548 310 109 2 1 306 1 310 4.84e-144 409
MS.gene24243.t1 AT5G66050 38.251 183 105 5 133 313 49 225 1.55e-27 108
MS.gene24243.t1 AT5G66050 38.251 183 105 5 133 313 143 319 8.49e-27 108
MS.gene24243.t1 AT5G66050 38.251 183 105 5 133 313 143 319 8.84e-27 108
MS.gene24243.t1 AT5G66050 35.294 170 102 5 133 300 143 306 1.93e-18 84.7

Find 71 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGAATGGCTTCTCTTAA+AGG 0.223961 1.2:+1960413 None:intergenic
GATGGAGATGATTGACAAAA+TGG 0.261208 1.2:+1961388 MS.gene24243:CDS
GATGTGTTAGAACTGAGTTT+TGG 0.285596 1.2:+1960513 MS.gene24243:CDS
CGGTCGATTATTTACTGAAA+TGG 0.286593 1.2:+1962046 MS.gene24243:CDS
AAAGACATACAAACAATTAT+AGG 0.305774 1.2:-1961012 None:intergenic
TCTATTCATCCTAAAGTTGC+AGG 0.331622 1.2:+1960452 MS.gene24243:CDS
TTCTGCACCCTTCCTATGAT+TGG 0.348033 1.2:+1960476 MS.gene24243:CDS
CTCGAATGATGGTGGAAGTA+TGG 0.356382 1.2:+1960625 MS.gene24243:CDS
GTGCAGAACCCTGCAACTTT+AGG 0.356945 1.2:-1960461 None:intergenic
TCAGCACAAGGTTGACCATT+TGG 0.367572 1.2:-1962182 None:intergenic
CTAACACATCTAACATTCAT+TGG 0.404358 1.2:-1960500 None:intergenic
AAGTACTTGTTGACTTGTAT+TGG 0.406137 1.2:-1961957 None:intergenic
ACATTCATTGGTCCAATCAT+AGG 0.408348 1.2:-1960488 None:intergenic
TGAATAGAGGGACAGAAAAC+TGG 0.421320 1.2:-1960437 None:intergenic
TGCAACTTTAGGATGAATAG+AGG 0.422092 1.2:-1960450 None:intergenic
CTCCAGCATTGTGGAGGGAC+AGG 0.429857 1.2:+1962617 MS.gene24243:intron
GGAATGAGAGTAATTGAATC+AGG 0.437048 1.2:+1961993 MS.gene24243:CDS
TTGAAAATGGAAGATGGGTC+TGG 0.444298 1.2:+1960979 MS.gene24243:CDS
AATAATCGACCGTCAAAACT+AGG 0.444954 1.2:-1962035 None:intergenic
TGCTCTTCCGCGTGTTTATG+TGG 0.449690 1.2:-1960571 None:intergenic
GACCTCCCTGAGGATTGTTA+TGG 0.464181 1.2:-1960921 None:intergenic
GCGGGATGTGGTGAATAATC+AGG 0.466253 1.2:-1960949 None:intergenic
GAGGTGAAGAGTGGAGCAGA+TGG 0.472687 1.2:+1960856 MS.gene24243:CDS
AATTACTCTCATTCCATCAC+TGG 0.485713 1.2:-1961985 None:intergenic
TCAGACTTGTCAGAGTTACT+AGG 0.488968 1.2:+1961509 MS.gene24243:CDS
GATGCCAAGCGTCTTACTAC+TGG 0.490820 1.2:+1961147 MS.gene24243:CDS
ATGTGTCCATAACAATCCTC+AGG 0.496470 1.2:+1960915 MS.gene24243:CDS
TTAAATTCGCCCTCGAATGA+TGG 0.505216 1.2:+1960614 MS.gene24243:CDS
TTTGGTATAGGTTGGAAATG+AGG 0.505315 1.2:+1961670 MS.gene24243:intron
GCGTGTTTATGTGGTAAGAA+AGG 0.507066 1.2:-1960562 None:intergenic
AAGTGACATTGCAGGCCAAA+TGG 0.514058 1.2:+1962167 MS.gene24243:intron
TTCAAAACCATAGCGGGATG+TGG 0.522034 1.2:-1960961 None:intergenic
CATACTTCCACCATCATTCG+AGG 0.528073 1.2:-1960624 None:intergenic
TTCATAATCAAAATGAGGGA+TGG 0.534500 1.2:+1960880 MS.gene24243:CDS
ATGGTTTCATAATCAAAATG+AGG 0.535720 1.2:+1960875 MS.gene24243:CDS
AGTTCAAGTGTGATTGAAGC+CGG 0.535784 1.2:+1960683 MS.gene24243:CDS
ATGGAGATGATTGACAAAAT+GGG 0.542602 1.2:+1961389 MS.gene24243:CDS
TTATTCACCACATCCCGCTA+TGG 0.543012 1.2:+1960954 MS.gene24243:CDS
TACGTTATATGAAGTTGTGA+TGG 0.552296 1.2:+1961370 MS.gene24243:CDS
AAGTACTTGGTGTCCAGTGA+TGG 0.563535 1.2:+1961972 MS.gene24243:CDS
GGGACAGGCTTAATCAACAT+AGG 0.571885 1.2:+1962632 MS.gene24243:CDS
TCATTGGTCCAATCATAGGA+AGG 0.576848 1.2:-1960484 None:intergenic
CTATTCATCCTAAAGTTGCA+GGG 0.578397 1.2:+1960453 MS.gene24243:CDS
AATTCGCCCTCGAATGATGG+TGG 0.578828 1.2:+1960617 MS.gene24243:CDS
TGCTCAGTTGTATCTTACCA+AGG 0.579022 1.2:+1961552 MS.gene24243:CDS
AGGCTTAATCAACATAGGGC+TGG 0.580254 1.2:+1962637 MS.gene24243:CDS
AATTCATCAGTTTCAGCACA+AGG 0.582528 1.2:-1962194 None:intergenic
GCTGCCAGTAGTAAGACGCT+TGG 0.586641 1.2:-1961151 None:intergenic
ATAATCGACCGTCAAAACTA+GGG 0.595399 1.2:-1962034 None:intergenic
ATGCAACTCCAGCATTGTGG+AGG 0.595666 1.2:+1962611 MS.gene24243:intron
AATACAAGTCAACAAGTACT+TGG 0.598418 1.2:+1961959 MS.gene24243:CDS
TTGGAAATGAGGCAGAATGT+AGG 0.599379 1.2:+1961681 MS.gene24243:CDS
CTGATGCAACTCCAGCATTG+TGG 0.599713 1.2:+1962608 MS.gene24243:intron
GGACAGGCTTAATCAACATA+GGG 0.600030 1.2:+1962633 MS.gene24243:CDS
CAATATTGCAGTAAGATGCA+AGG 0.620500 1.2:+1961733 MS.gene24243:CDS
TGATAGCATCAGAAGGTCGA+AGG 0.622485 1.2:-1961712 None:intergenic
TGGTTTCATAATCAAAATGA+GGG 0.623930 1.2:+1960876 MS.gene24243:CDS
GAAGAGCGTTACGATGATGC+CGG 0.630135 1.2:+1962251 MS.gene24243:CDS
AGTTACTAGGAGAGTCGATG+AGG 0.631695 1.2:+1961522 MS.gene24243:CDS
GCAATATTGATAGCATCAGA+AGG 0.632049 1.2:-1961719 None:intergenic
TGCAACTCCAGCATTGTGGA+GGG 0.635561 1.2:+1962612 MS.gene24243:intron
CATTGGTCCAATCATAGGAA+GGG 0.639201 1.2:-1960483 None:intergenic
TCAAAACTAGGGATCTGCGT+TGG 0.642657 1.2:-1962023 None:intergenic
TGACTAGTTGAGGTGAAGAG+TGG 0.642688 1.2:+1960847 MS.gene24243:intron
GCAACTTTAGGATGAATAGA+GGG 0.651301 1.2:-1960449 None:intergenic
ATACTTCCACCATCATTCGA+GGG 0.659413 1.2:-1960623 None:intergenic
TGTGTCCATAACAATCCTCA+GGG 0.669670 1.2:+1960916 MS.gene24243:CDS
ATCACAACTTCATATAACGT+AGG 0.716033 1.2:-1961368 None:intergenic
GTCCATAACAATCCTCAGGG+AGG 0.723950 1.2:+1960919 MS.gene24243:CDS
TTTCTTACCACATAAACACG+CGG 0.767118 1.2:+1960564 MS.gene24243:CDS
TCAGGAAGATGACCTCCCTG+AGG 0.767271 1.2:-1960931 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATGATTAAACACATATA+GGG - chr1.2:1961044-1961063 None:intergenic 15.0%
!! TTATATGATTAAACACATAT+AGG - chr1.2:1961045-1961064 None:intergenic 15.0%
!!! ATGTTTATGTCATATTTTTA+GGG - chr1.2:1961611-1961630 None:intergenic 15.0%
!!! TCAAGCATTTTAATATTTTA+CGG + chr1.2:1961922-1961941 MS.gene24243:intron 15.0%
!!! TTCTAATCCTATTTTTATTT+TGG + chr1.2:1961453-1961472 MS.gene24243:intron 15.0%
!!! TTTATATGACAATTTTACAA+AGG + chr1.2:1962691-1962710 MS.gene24243:intron 15.0%
!! AAAGACATACAAACAATTAT+AGG - chr1.2:1961015-1961034 None:intergenic 20.0%
!! GAAAAGACCAAAATAAAAAT+AGG - chr1.2:1961463-1961482 None:intergenic 20.0%
!! TGATGATATATATTTGGTAT+AGG + chr1.2:1961658-1961677 MS.gene24243:intron 20.0%
!!! AAATTCCATATTTCATTTTG+TGG + chr1.2:1962532-1962551 MS.gene24243:intron 20.0%
!!! ATCATATAAGTTTAGTTCTT+TGG + chr1.2:1961056-1961075 MS.gene24243:intron 20.0%
!!! CATGTTTATGTCATATTTTT+AGG - chr1.2:1961612-1961631 None:intergenic 20.0%
! ATCAAAGTATACCTATAACT+AGG - chr1.2:1962379-1962398 None:intergenic 25.0%
! ATGGTTTCATAATCAAAATG+AGG + chr1.2:1960875-1960894 MS.gene24243:CDS 25.0%
! GATATATATTTGGTATAGGT+TGG + chr1.2:1961662-1961681 MS.gene24243:intron 25.0%
! TACGAGTGATGATATATATT+TGG + chr1.2:1961652-1961671 MS.gene24243:intron 25.0%
! TCAAAGTATACCTATAACTA+GGG - chr1.2:1962378-1962397 None:intergenic 25.0%
! TGGTTTCATAATCAAAATGA+GGG + chr1.2:1960876-1960895 MS.gene24243:CDS 25.0%
!! TCTTTACCATTGTAATTTTC+TGG + chr1.2:1961103-1961122 MS.gene24243:intron 25.0%
!! TGAAATAACTTGTACTCATA+AGG + chr1.2:1962082-1962101 MS.gene24243:intron 25.0%
!! TGATGATGTATTCAAATGTA+TGG - chr1.2:1961773-1961792 None:intergenic 25.0%
!!! GCTTAATTTTATTTTGTTGC+AGG + chr1.2:1962727-1962746 MS.gene24243:intron 25.0%
!!! TAGTATTTTGTTTACTAGCA+TGG + chr1.2:1960770-1960789 MS.gene24243:intron 25.0%
!!! TATGTCATATTTTTAGGGTT+GGG - chr1.2:1961606-1961625 None:intergenic 25.0%
!!! TTATGTCATATTTTTAGGGT+TGG - chr1.2:1961607-1961626 None:intergenic 25.0%
!!! TTTGATGTTTTTGCTCTTAT+TGG + chr1.2:1962393-1962412 MS.gene24243:intron 25.0%
AATACAAGTCAACAAGTACT+TGG + chr1.2:1961959-1961978 MS.gene24243:CDS 30.0%
AATCAGAAGACTGTAATTAC+CGG - chr1.2:1962273-1962292 None:intergenic 30.0%
ATCACAACTTCATATAACGT+AGG - chr1.2:1961371-1961390 None:intergenic 30.0%
ATGGAGATGATTGACAAAAT+GGG + chr1.2:1961389-1961408 MS.gene24243:CDS 30.0%
CTAACACATCTAACATTCAT+TGG - chr1.2:1960503-1960522 None:intergenic 30.0%
CTAGTCCACAAAATGAAATA+TGG - chr1.2:1962540-1962559 None:intergenic 30.0%
CTGGTAAAAACATGAAAAGA+AGG + chr1.2:1962656-1962675 MS.gene24243:CDS 30.0%
GAAAGAAACAGAATCATACT+TGG - chr1.2:1961418-1961437 None:intergenic 30.0%
GACATTCCAGAAAATTACAA+TGG - chr1.2:1961112-1961131 None:intergenic 30.0%
TACGTTATATGAAGTTGTGA+TGG + chr1.2:1961370-1961389 MS.gene24243:CDS 30.0%
TTATATATCTCAGAAGAACG+AGG - chr1.2:1961259-1961278 None:intergenic 30.0%
TTCATAATCAAAATGAGGGA+TGG + chr1.2:1960880-1960899 MS.gene24243:CDS 30.0%
! ATGTGTTAGAACTGAGTTTT+GGG + chr1.2:1960514-1960533 MS.gene24243:CDS 30.0%
! TAATATTTTACGGATGACAC+AGG + chr1.2:1961932-1961951 MS.gene24243:intron 30.0%
! TTCCATTTTCAAAACCATAG+CGG - chr1.2:1960971-1960990 None:intergenic 30.0%
!! AAGTACTTGTTGACTTGTAT+TGG - chr1.2:1961960-1961979 None:intergenic 30.0%
!! ATGATTTTGTTGACTAGTTG+AGG + chr1.2:1960837-1960856 MS.gene24243:intron 30.0%
!!! ATGGTTTTGAAAATGGAAGA+TGG + chr1.2:1960973-1960992 MS.gene24243:CDS 30.0%
!!! ATTTTTTTTCCCTGCAATAC+TGG + chr1.2:1961862-1961881 MS.gene24243:intron 30.0%
!!! TGGTTTTGAAAATGGAAGAT+GGG + chr1.2:1960974-1960993 MS.gene24243:CDS 30.0%
AAAAATCAAGCCGTCATGTA+TGG - chr1.2:1961848-1961867 None:intergenic 35.0%
AAGTCTTGACAAACATGTGA+CGG - chr1.2:1961231-1961250 None:intergenic 35.0%
AATAATCGACCGTCAAAACT+AGG - chr1.2:1962038-1962057 None:intergenic 35.0%
AATTACTCTCATTCCATCAC+TGG - chr1.2:1961988-1962007 None:intergenic 35.0%
AATTCATCAGTTTCAGCACA+AGG - chr1.2:1962197-1962216 None:intergenic 35.0%
ACATAGAACCAGAATCTTTC+TGG - chr1.2:1961300-1961319 None:intergenic 35.0%
ACATTCATTGGTCCAATCAT+AGG - chr1.2:1960491-1960510 None:intergenic 35.0%
ATAATCGACCGTCAAAACTA+GGG - chr1.2:1962037-1962056 None:intergenic 35.0%
ATCATTGTTGCCATACATGA+CGG + chr1.2:1961835-1961854 MS.gene24243:intron 35.0%
CAATATTGCAGTAAGATGCA+AGG + chr1.2:1961733-1961752 MS.gene24243:CDS 35.0%
CATGTAGTAGCTAAACATAC+CGG - chr1.2:1960705-1960724 None:intergenic 35.0%
CGGTCGATTATTTACTGAAA+TGG + chr1.2:1962046-1962065 MS.gene24243:CDS 35.0%
CTATTCATCCTAAAGTTGCA+GGG + chr1.2:1960453-1960472 MS.gene24243:CDS 35.0%
GATGGAGATGATTGACAAAA+TGG + chr1.2:1961388-1961407 MS.gene24243:CDS 35.0%
GGAATGAGAGTAATTGAATC+AGG + chr1.2:1961993-1962012 MS.gene24243:CDS 35.0%
TCTATTCATCCTAAAGTTGC+AGG + chr1.2:1960452-1960471 MS.gene24243:CDS 35.0%
TGTTAACTTTCCTCTTGGAT+GGG + chr1.2:1962431-1962450 MS.gene24243:intron 35.0%
TGTTTGATCCAGAAAGATTC+TGG + chr1.2:1961289-1961308 MS.gene24243:intron 35.0%
TTAACTACAAGTGACATTGC+AGG + chr1.2:1962159-1962178 MS.gene24243:intron 35.0%
TTGTTAACTTTCCTCTTGGA+TGG + chr1.2:1962430-1962449 MS.gene24243:intron 35.0%
TTTCTTACCACATAAACACG+CGG + chr1.2:1960564-1960583 MS.gene24243:CDS 35.0%
TTTGTTCGTACCCTAGTTAT+AGG + chr1.2:1962365-1962384 MS.gene24243:intron 35.0%
! ATTTTCCATCCAGTATTGCA+GGG - chr1.2:1961874-1961893 None:intergenic 35.0%
! CAATGTCACTTGTAGTTAAG+AGG - chr1.2:1962158-1962177 None:intergenic 35.0%
! GATGTGTTAGAACTGAGTTT+TGG + chr1.2:1960513-1960532 MS.gene24243:CDS 35.0%
! GCAATATTGATAGCATCAGA+AGG - chr1.2:1961722-1961741 None:intergenic 35.0%
! TCCATTTTCAAAACCATAGC+GGG - chr1.2:1960970-1960989 None:intergenic 35.0%
! TGGAATGTCTTTATTTGCAG+TGG + chr1.2:1961123-1961142 MS.gene24243:intron 35.0%
! TGTGTTAGAACTGAGTTTTG+GGG + chr1.2:1960515-1960534 MS.gene24243:CDS 35.0%
! TTTGGTATAGGTTGGAAATG+AGG + chr1.2:1961670-1961689 MS.gene24243:intron 35.0%
!! CAACTTGTTAACTTTCCTCT+TGG + chr1.2:1962426-1962445 MS.gene24243:intron 35.0%
!! GCAACTTTAGGATGAATAGA+GGG - chr1.2:1960452-1960471 None:intergenic 35.0%
!! TGCAACTTTAGGATGAATAG+AGG - chr1.2:1960453-1960472 None:intergenic 35.0%
!!! TCATATTTTTAGGGTTGGGA+GGG - chr1.2:1961602-1961621 None:intergenic 35.0%
AGTTCAAGTGTGATTGAAGC+CGG + chr1.2:1960683-1960702 MS.gene24243:CDS 40.0%
AGTTGCATCAGAAACATGAG+AGG - chr1.2:1962599-1962618 None:intergenic 40.0%
ATAACAAGACCCTCTCATGT+TGG - chr1.2:1962476-1962495 None:intergenic 40.0%
ATACTTCCACCATCATTCGA+GGG - chr1.2:1960626-1960645 None:intergenic 40.0%
ATGTGTCCATAACAATCCTC+AGG + chr1.2:1960915-1960934 MS.gene24243:CDS 40.0%
ATGTTACTCTCCAACATGAG+AGG + chr1.2:1962463-1962482 MS.gene24243:intron 40.0%
CACTATTTGGTTGCTGTATC+AGG + chr1.2:1961340-1961359 MS.gene24243:intron 40.0%
CATTGGTCCAATCATAGGAA+GGG - chr1.2:1960486-1960505 None:intergenic 40.0%
GCGTGTTTATGTGGTAAGAA+AGG - chr1.2:1960565-1960584 None:intergenic 40.0%
GGACAGGCTTAATCAACATA+GGG + chr1.2:1962633-1962652 MS.gene24243:CDS 40.0%
GTTAACTTTCCTCTTGGATG+GGG + chr1.2:1962432-1962451 MS.gene24243:intron 40.0%
TAGGGTACGAACAAAATCAC+TGG - chr1.2:1962360-1962379 None:intergenic 40.0%
TCAGACTTGTCAGAGTTACT+AGG + chr1.2:1961509-1961528 MS.gene24243:CDS 40.0%
TCATTGGTCCAATCATAGGA+AGG - chr1.2:1960487-1960506 None:intergenic 40.0%
TGAATAGAGGGACAGAAAAC+TGG - chr1.2:1960440-1960459 None:intergenic 40.0%
TGCTCAGTTGTATCTTACCA+AGG + chr1.2:1961552-1961571 MS.gene24243:CDS 40.0%
TGTGTCCATAACAATCCTCA+GGG + chr1.2:1960916-1960935 MS.gene24243:CDS 40.0%
TGTTACTCTCCAACATGAGA+GGG + chr1.2:1962464-1962483 MS.gene24243:intron 40.0%
TTAAATTCGCCCTCGAATGA+TGG + chr1.2:1960614-1960633 MS.gene24243:CDS 40.0%
TTGAAAATGGAAGATGGGTC+TGG + chr1.2:1960979-1960998 MS.gene24243:CDS 40.0%
TTGGAAATGAGGCAGAATGT+AGG + chr1.2:1961681-1961700 MS.gene24243:CDS 40.0%
! GATTTTCCATCCAGTATTGC+AGG - chr1.2:1961875-1961894 None:intergenic 40.0%
! TTTTTCCCTGCAATACTGGA+TGG + chr1.2:1961866-1961885 MS.gene24243:intron 40.0%
!! GTGTTAGAACTGAGTTTTGG+GGG + chr1.2:1960516-1960535 MS.gene24243:CDS 40.0%
!!! GTCATATTTTTAGGGTTGGG+AGG - chr1.2:1961603-1961622 None:intergenic 40.0%
!!! TCCCGCTATGGTTTTGAAAA+TGG + chr1.2:1960966-1960985 MS.gene24243:CDS 40.0%
AAGTGACATTGCAGGCCAAA+TGG + chr1.2:1962167-1962186 MS.gene24243:intron 45.0%
AGGCGTATTTCACGAAGCAA+AGG - chr1.2:1962138-1962157 None:intergenic 45.0%
AGGCTTAATCAACATAGGGC+TGG + chr1.2:1962637-1962656 MS.gene24243:CDS 45.0%
AGTTACTAGGAGAGTCGATG+AGG + chr1.2:1961522-1961541 MS.gene24243:CDS 45.0%
CATACTTCCACCATCATTCG+AGG - chr1.2:1960627-1960646 None:intergenic 45.0%
CCAAATAGTGAGAATCAGCG+TGG - chr1.2:1961330-1961349 None:intergenic 45.0%
GGAGTACAGAGTAAATGCCT+TGG - chr1.2:1961572-1961591 None:intergenic 45.0%
GGGACAGGCTTAATCAACAT+AGG + chr1.2:1962632-1962651 MS.gene24243:CDS 45.0%
TCAAAACTAGGGATCTGCGT+TGG - chr1.2:1962026-1962045 None:intergenic 45.0%
TCAGCACAAGGTTGACCATT+TGG - chr1.2:1962185-1962204 None:intergenic 45.0%
TCATCACTCGTAAGCACTAG+AGG - chr1.2:1961644-1961663 None:intergenic 45.0%
TGATAGCATCAGAAGGTCGA+AGG - chr1.2:1961715-1961734 None:intergenic 45.0%
TTATTCACCACATCCCGCTA+TGG + chr1.2:1960954-1960973 MS.gene24243:CDS 45.0%
TTCTGCACCCTTCCTATGAT+TGG + chr1.2:1960476-1960495 MS.gene24243:CDS 45.0%
TTTACTAGCATGGTTGCACG+AGG + chr1.2:1960780-1960799 MS.gene24243:intron 45.0%
TTTGGTTGCTGTATCAGGCT+AGG + chr1.2:1961345-1961364 MS.gene24243:intron 45.0%
! TGACTAGTTGAGGTGAAGAG+TGG + chr1.2:1960847-1960866 MS.gene24243:intron 45.0%
! TTCAAAACCATAGCGGGATG+TGG - chr1.2:1960964-1960983 None:intergenic 45.0%
!! AAGTACTTGGTGTCCAGTGA+TGG + chr1.2:1961972-1961991 MS.gene24243:CDS 45.0%
!! CCACGCTGATTCTCACTATT+TGG + chr1.2:1961327-1961346 MS.gene24243:intron 45.0%
!! CTCGAATGATGGTGGAAGTA+TGG + chr1.2:1960625-1960644 MS.gene24243:CDS 45.0%
!!! AACTGAGTTTTGGGGGCTAA+GGG + chr1.2:1960523-1960542 MS.gene24243:CDS 45.0%
!!! ACGCAGATCCCTAGTTTTGA+CGG + chr1.2:1962026-1962045 MS.gene24243:CDS 45.0%
!!! TATTTTTAGGGTTGGGAGGG+AGG - chr1.2:1961599-1961618 None:intergenic 45.0%
AAGTCTGACCTGCAGAAGCA+CGG - chr1.2:1961497-1961516 None:intergenic 50.0%
AATTCGCCCTCGAATGATGG+TGG + chr1.2:1960617-1960636 MS.gene24243:CDS 50.0%
ATGCAACTCCAGCATTGTGG+AGG + chr1.2:1962611-1962630 MS.gene24243:intron 50.0%
ATGTCATTCCGTGCTTCTGC+AGG + chr1.2:1961486-1961505 MS.gene24243:intron 50.0%
CATTGCATTCTCCTACGGCT+TGG + chr1.2:1961801-1961820 MS.gene24243:intron 50.0%
CTGATGCAACTCCAGCATTG+TGG + chr1.2:1962608-1962627 MS.gene24243:intron 50.0%
GACCTCCCTGAGGATTGTTA+TGG - chr1.2:1960924-1960943 None:intergenic 50.0%
GATGCCAAGCGTCTTACTAC+TGG + chr1.2:1961147-1961166 MS.gene24243:CDS 50.0%
GCGCACATTGCATTCTCCTA+CGG + chr1.2:1961796-1961815 MS.gene24243:intron 50.0%
GCGGGATGTGGTGAATAATC+AGG - chr1.2:1960952-1960971 None:intergenic 50.0%
GGGGGCTAAGGGAATTTAAG+AGG + chr1.2:1960534-1960553 MS.gene24243:CDS 50.0%
GTCCATAACAATCCTCAGGG+AGG + chr1.2:1960919-1960938 MS.gene24243:CDS 50.0%
GTGCAGAACCCTGCAACTTT+AGG - chr1.2:1960464-1960483 None:intergenic 50.0%
GTTGCACGAGGTTCGTCTTT+AGG + chr1.2:1960792-1960811 MS.gene24243:intron 50.0%
TAACTGTCAAGCCAAGCCGT+AGG - chr1.2:1961815-1961834 None:intergenic 50.0%
TGACAGAAACCCCATCCAAG+AGG - chr1.2:1962444-1962463 None:intergenic 50.0%
TGCAACTCCAGCATTGTGGA+GGG + chr1.2:1962612-1962631 MS.gene24243:intron 50.0%
TGCTCTTCCGCGTGTTTATG+TGG - chr1.2:1960574-1960593 None:intergenic 50.0%
!! GAAGAGCGTTACGATGATGC+CGG + chr1.2:1962251-1962270 MS.gene24243:CDS 50.0%
!!! GAACTGAGTTTTGGGGGCTA+AGG + chr1.2:1960522-1960541 MS.gene24243:CDS 50.0%
GAGGTGAAGAGTGGAGCAGA+TGG + chr1.2:1960856-1960875 MS.gene24243:CDS 55.0%
GCTGCCAGTAGTAAGACGCT+TGG - chr1.2:1961154-1961173 None:intergenic 55.0%
TAGGGTTGGGAGGGAGGATA+AGG - chr1.2:1961593-1961612 None:intergenic 55.0%
TCAGGAAGATGACCTCCCTG+AGG - chr1.2:1960934-1960953 None:intergenic 55.0%
AGCCTGTCCCTCCACAATGC+TGG - chr1.2:1962622-1962641 None:intergenic 60.0%
CTCCAGCATTGTGGAGGGAC+AGG + chr1.2:1962617-1962636 MS.gene24243:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 1960419 1962755 1960419 ID=MS.gene24243
chr1.2 mRNA 1960419 1962755 1960419 ID=MS.gene24243.t1;Parent=MS.gene24243
chr1.2 exon 1960419 1960704 1960419 ID=MS.gene24243.t1.exon1;Parent=MS.gene24243.t1
chr1.2 CDS 1960419 1960704 1960419 ID=cds.MS.gene24243.t1;Parent=MS.gene24243.t1
chr1.2 exon 1960854 1961024 1960854 ID=MS.gene24243.t1.exon2;Parent=MS.gene24243.t1
chr1.2 CDS 1960854 1961024 1960854 ID=cds.MS.gene24243.t1;Parent=MS.gene24243.t1
chr1.2 exon 1961143 1961192 1961143 ID=MS.gene24243.t1.exon3;Parent=MS.gene24243.t1
chr1.2 CDS 1961143 1961192 1961143 ID=cds.MS.gene24243.t1;Parent=MS.gene24243.t1
chr1.2 exon 1961362 1961418 1961362 ID=MS.gene24243.t1.exon4;Parent=MS.gene24243.t1
chr1.2 CDS 1961362 1961418 1961362 ID=cds.MS.gene24243.t1;Parent=MS.gene24243.t1
chr1.2 exon 1961508 1961573 1961508 ID=MS.gene24243.t1.exon5;Parent=MS.gene24243.t1
chr1.2 CDS 1961508 1961573 1961508 ID=cds.MS.gene24243.t1;Parent=MS.gene24243.t1
chr1.2 exon 1961680 1961754 1961680 ID=MS.gene24243.t1.exon6;Parent=MS.gene24243.t1
chr1.2 CDS 1961680 1961754 1961680 ID=cds.MS.gene24243.t1;Parent=MS.gene24243.t1
chr1.2 exon 1961954 1962072 1961954 ID=MS.gene24243.t1.exon7;Parent=MS.gene24243.t1
chr1.2 CDS 1961954 1962072 1961954 ID=cds.MS.gene24243.t1;Parent=MS.gene24243.t1
chr1.2 exon 1962181 1962272 1962181 ID=MS.gene24243.t1.exon8;Parent=MS.gene24243.t1
chr1.2 CDS 1962181 1962272 1962181 ID=cds.MS.gene24243.t1;Parent=MS.gene24243.t1
chr1.2 exon 1962623 1962677 1962623 ID=MS.gene24243.t1.exon9;Parent=MS.gene24243.t1
chr1.2 CDS 1962623 1962677 1962623 ID=cds.MS.gene24243.t1;Parent=MS.gene24243.t1
chr1.2 exon 1962749 1962755 1962749 ID=MS.gene24243.t1.exon10;Parent=MS.gene24243.t1
chr1.2 CDS 1962749 1962755 1962749 ID=cds.MS.gene24243.t1;Parent=MS.gene24243.t1
Gene Sequence

>MS.gene24243

ATGGCTTCTCTTAAAGGACCAGTTTTCTGTCCCTCTATTCATCCTAAAGTTGCAGGGTTCTGCACCCTTCCTATGATTGGACCAATGAATGTTAGATGTGTTAGAACTGAGTTTTGGGGGCTAAGGGAATTTAAGAGGAGTTTCCTTTCTTACCACATAAACACGCGGAAGAGCAATACAGTAGTGCATTGTAGTTTAAATTCGCCCTCGAATGATGGTGGAAGTATGGCAGAAAGTTTCAATGAAAAAGATGAAGATTATGTTAGTTCAAGTGTGATTGAAGCCGGTATGTTTAGCTACTACATGTTAATTCAAGTACGATCTATATGACAGTATGCTGATATTATAATTTAGTATTTTGTTTACTAGCATGGTTGCACGAGGTTCGTCTTTAGGATTTTCTGTATGTGATTGTTCTATGATTTTGTTGACTAGTTGAGGTGAAGAGTGGAGCAGATGGTTTCATAATCAAAATGAGGGATGGAAAACACTTGAGATGTGTCCATAACAATCCTCAGGGAGGTCATCTTCCTGATTATTCACCACATCCCGCTATGGTTTTGAAAATGGAAGATGGGTCTGGCTTACTTCTACCTATAATTGTTTGTATGTCTTTCTCACACCCTATATGTGTTTAATCATATAAGTTTAGTTCTTTGGATTTGATTTTGATAATTATATATATCTTTACCATTGTAATTTTCTGGAATGTCTTTATTTGCAGTGGAGATGCCAAGCGTCTTACTACTGGCAGCAGTATGCAATGTTTCAATTGTATGTCTTTTTGTCAGTTGAATTTCACTATGTTACCGTCACATGTTTGTCAAGACTTCTTTTCCTCGTTCTTCTGAGATATATAACAAAATCAATTGTTTGATCCAGAAAGATTCTGGTTCTATGTAATTTAGCCACGCTGATTCTCACTATTTGGTTGCTGTATCAGGCTAGGCCTACGTTATATGAAGTTGTGATGGAGATGATTGACAAAATGGGTTACCAAGTATGATTCTGTTTCTTTCTTTTTATACTCTTAATTCTAATCCTATTTTTATTTTGGTCTTTTCATCATGTCATTCCGTGCTTCTGCAGGTCAGACTTGTCAGAGTTACTAGGAGAGTCGATGAGGCATATTTTGCTCAGTTGTATCTTACCAAGGCATTTACTCTGTACTCCTTATCCTCCCTCCCAACCCTAAAAATATGACATAAACATGCAACATTCACCTCTAGTGCTTACGAGTGATGATATATATTTGGTATAGGTTGGAAATGAGGCAGAATGTAGGAGCTTTGACCTTCGACCTTCTGATGCTATCAATATTGCAGTAAGATGCAAGGTAGTCTTTGAAAATCCATACATTTGAATACATCATCACTTGCGCACATTGCATTCTCCTACGGCTTGGCTTGACAGTTAATCATTGTTGCCATACATGACGGCTTGATTTTTTTTCCCTGCAATACTGGATGGAAAATCTTTAGTTCTACTTGTTAAAATTGTTGATCAAGCATTTTAATATTTTACGGATGACACAGGTGCCAATACAAGTCAACAAGTACTTGGTGTCCAGTGATGGAATGAGAGTAATTGAATCAGGCAAATTGCCAACGCAGATCCCTAGTTTTGACGGTCGATTATTTACTGAAATGGACAAGTATGTTTGTGAAATAACTTGTACTCATAAGGCAATGCAACTGACTTGTTTGCAATATCACTCCTTTGCTTCGTGAAATACGCCTCTTAACTACAAGTGACATTGCAGGCCAAATGGTCAACCTTGTGCTGAAACTGATGAATTTAATCTTTTGAACAACATGTTGAAAGCTGTTGATGAAGAGCGTTACGATGATGCCGGTAATTACAGTCTTCTGATTATTTCAATCATTTACTAATTATAATTTTATGTTTTGATTGATGATGATAGCAACTGCGAACAGACCAGTGATTTTGTTCGTACCCTAGTTATAGGTATACTTTGATGTTTTTGCTCTTATTGGTTAGAGCTATCAACTTGTTAACTTTCCTCTTGGATGGGGTTTCTGTCATGTTACTCTCCAACATGAGAGGGTCTTGTTATGAGAATGATTTGAACAAAATCAACTATTTTTTATGCAAATTCCATATTTCATTTTGTGGACTAGAATATAAATTGTACTTCTCTGATCTTGCTACTTTCACCTCTCATGTTTCTGATGCAACTCCAGCATTGTGGAGGGACAGGCTTAATCAACATAGGGCTGGTAAAAACATGAAAAGAAGGTATGAAATTAATTTTATATGACAATTTTACAAAGGCATAAAATTGACAGCTTAATTTTATTTTGTTGCAGGTCCTGA
Protein sequence

>MS.gene24243.t1

MASLKGPVFCPSIHPKVAGFCTLPMIGPMNVRCVRTEFWGLREFKRSFLSYHINTRKSNTVVHCSLNSPSNDGGSMAESFNEKDEDYVSSSVIEAVEVKSGADGFIIKMRDGKHLRCVHNNPQGGHLPDYSPHPAMVLKMEDGSGLLLPIIVLEMPSVLLLAAVCNVSIARPTLYEVVMEMIDKMGYQVRLVRVTRRVDEAYFAQLYLTKVGNEAECRSFDLRPSDAINIAVRCKVPIQVNKYLVSSDGMRVIESGKLPTQIPSFDGRLFTEMDKPNGQPCAETDEFNLLNNMLKAVDEERYDDAALWRDRLNQHRAGKNMKRRS