Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24318.t1 | RHN77417.1 | 97.8 | 232 | 5 | 0 | 1 | 232 | 3 | 234 | 1.30E-119 | 439.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24318.t1 | Q09463 | 48.8 | 123 | 52 | 4 | 26 | 147 | 20 | 132 | 3.1e-26 | 120.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24318.t1 | A0A072VF61 | 97.8 | 232 | 5 | 0 | 1 | 232 | 1 | 232 | 9.1e-120 | 439.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene24318 | MS.gene06250 | PPI |
MS.gene24318 | MS.gene013177 | PPI |
MS.gene24318 | MS.gene41663 | PPI |
MS.gene24318 | MS.gene055526 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24318.t1 | MTR_1g021895 | 99.138 | 232 | 2 | 0 | 1 | 232 | 1 | 232 | 8.87e-173 | 474 |
MS.gene24318.t1 | MTR_5g019300 | 56.067 | 239 | 95 | 4 | 1 | 231 | 1 | 237 | 1.47e-77 | 233 |
MS.gene24318.t1 | MTR_8g465910 | 33.186 | 226 | 120 | 9 | 19 | 230 | 34 | 242 | 3.13e-30 | 112 |
MS.gene24318.t1 | MTR_2g090325 | 52.222 | 90 | 37 | 2 | 21 | 110 | 10 | 93 | 8.04e-30 | 110 |
MS.gene24318.t1 | MTR_2g090330 | 48.958 | 96 | 44 | 2 | 22 | 112 | 22 | 117 | 1.44e-28 | 106 |
MS.gene24318.t1 | MTR_2g090330 | 48.958 | 96 | 44 | 2 | 22 | 112 | 25 | 120 | 1.67e-28 | 105 |
MS.gene24318.t1 | MTR_7g093390 | 51.163 | 86 | 40 | 1 | 30 | 115 | 170 | 253 | 5.23e-28 | 110 |
MS.gene24318.t1 | MTR_2g090295 | 50.000 | 94 | 39 | 2 | 25 | 110 | 35 | 128 | 3.94e-27 | 104 |
MS.gene24318.t1 | MTR_1g054210 | 41.379 | 116 | 65 | 2 | 3 | 115 | 93 | 208 | 7.70e-27 | 103 |
MS.gene24318.t1 | MTR_1g054280 | 47.191 | 89 | 44 | 3 | 25 | 111 | 71 | 158 | 1.41e-25 | 100 |
MS.gene24318.t1 | MTR_1g054260 | 38.843 | 121 | 64 | 2 | 7 | 117 | 64 | 184 | 1.27e-24 | 97.1 |
MS.gene24318.t1 | MTR_4g088870 | 38.406 | 138 | 67 | 5 | 30 | 149 | 32 | 169 | 4.00e-24 | 95.5 |
MS.gene24318.t1 | MTR_4g029440 | 38.793 | 116 | 64 | 2 | 30 | 138 | 126 | 241 | 2.37e-23 | 97.4 |
MS.gene24318.t1 | MTR_2g013550 | 52.857 | 70 | 26 | 1 | 26 | 88 | 23 | 92 | 2.81e-23 | 94.4 |
MS.gene24318.t1 | MTR_4g029440 | 38.793 | 116 | 64 | 2 | 30 | 138 | 132 | 247 | 2.81e-23 | 97.4 |
MS.gene24318.t1 | MTR_4g088875 | 48.889 | 90 | 35 | 3 | 30 | 108 | 31 | 120 | 3.94e-23 | 94.0 |
MS.gene24318.t1 | MTR_1g054465 | 42.308 | 104 | 46 | 3 | 19 | 108 | 40 | 143 | 4.31e-23 | 92.8 |
MS.gene24318.t1 | MTR_2g061230 | 38.636 | 88 | 53 | 1 | 30 | 116 | 107 | 194 | 2.82e-19 | 83.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24318.t1 | AT1G19310 | 67.347 | 196 | 47 | 6 | 30 | 215 | 21 | 209 | 8.77e-85 | 251 |
MS.gene24318.t1 | AT2G23780 | 55.760 | 217 | 86 | 5 | 20 | 231 | 16 | 227 | 3.82e-79 | 237 |
MS.gene24318.t1 | AT2G23780 | 55.760 | 217 | 86 | 5 | 20 | 231 | 16 | 227 | 3.82e-79 | 237 |
MS.gene24318.t1 | AT2G23780 | 55.760 | 217 | 86 | 5 | 20 | 231 | 16 | 227 | 3.82e-79 | 237 |
MS.gene24318.t1 | AT1G74990 | 55.639 | 133 | 56 | 2 | 20 | 151 | 7 | 137 | 1.88e-48 | 156 |
MS.gene24318.t1 | AT4G03510 | 31.624 | 234 | 135 | 7 | 10 | 230 | 26 | 247 | 4.49e-32 | 117 |
MS.gene24318.t1 | AT4G03510 | 31.624 | 234 | 135 | 7 | 10 | 230 | 26 | 247 | 4.49e-32 | 117 |
MS.gene24318.t1 | AT4G03510 | 31.624 | 234 | 135 | 7 | 10 | 230 | 26 | 247 | 4.49e-32 | 117 |
MS.gene24318.t1 | AT4G03510 | 31.624 | 234 | 135 | 7 | 10 | 230 | 26 | 247 | 4.49e-32 | 117 |
MS.gene24318.t1 | AT4G27470 | 44.828 | 116 | 51 | 3 | 25 | 127 | 37 | 152 | 4.67e-27 | 104 |
MS.gene24318.t1 | AT4G28270 | 46.875 | 96 | 32 | 3 | 28 | 110 | 17 | 106 | 1.88e-25 | 99.0 |
MS.gene24318.t1 | AT2G42030 | 45.055 | 91 | 47 | 2 | 25 | 115 | 134 | 221 | 3.83e-25 | 102 |
MS.gene24318.t1 | AT3G58030 | 45.055 | 91 | 47 | 3 | 25 | 115 | 132 | 219 | 1.70e-23 | 98.2 |
MS.gene24318.t1 | AT3G58030 | 45.055 | 91 | 47 | 3 | 25 | 115 | 132 | 219 | 1.70e-23 | 98.2 |
MS.gene24318.t1 | AT3G58030 | 45.055 | 91 | 47 | 3 | 25 | 115 | 132 | 219 | 1.70e-23 | 98.2 |
MS.gene24318.t1 | AT3G58030 | 45.055 | 91 | 47 | 3 | 25 | 115 | 132 | 219 | 1.70e-23 | 98.2 |
MS.gene24318.t1 | AT2G44410 | 40.659 | 91 | 51 | 2 | 28 | 116 | 121 | 210 | 3.11e-19 | 85.9 |
Find 76 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGAAATTGGTTCCTTTATA+TGG | 0.186055 | 1.1:+2556912 | MS.gene24318:CDS |
TCAGGTGGAGGTGCAGTTTC+AGG | 0.199841 | 1.1:-2557014 | None:intergenic |
CCAAATCCATGTTGAGAAAA+AGG | 0.224751 | 1.1:-2557044 | None:intergenic |
TTTGGATTCACAGGTGGATT+AGG | 0.251366 | 1.1:+2557062 | MS.gene24318:CDS |
TTCACATTTGCTGCCGGATT+TGG | 0.272552 | 1.1:+2557122 | MS.gene24318:CDS |
TACAGATGGCAAGTGGGTTT+GGG | 0.276615 | 1.1:+2556673 | None:intergenic |
GCTGCCGGATTTGGTGGATT+GGG | 0.286886 | 1.1:+2557131 | MS.gene24318:CDS |
GAGCTGCTGGTTTCCCTTAC+GGG | 0.292992 | 1.1:+2557219 | MS.gene24318:CDS |
TTGGATTCACAGGTGGATTA+GGG | 0.303936 | 1.1:+2557063 | MS.gene24318:CDS |
GATGATTGAGGAGGAGAAAT+TGG | 0.306323 | 1.1:+2556899 | MS.gene24318:CDS |
CCGGCAACAACTGCAAGATT+TGG | 0.331916 | 1.1:+2557095 | MS.gene24318:CDS |
TGACCACACAAAGTAATAAT+AGG | 0.332316 | 1.1:-2556801 | None:intergenic |
TTACAGATGGCAAGTGGGTT+TGG | 0.332494 | 1.1:+2556672 | None:intergenic |
TGCTGCCGGATTTGGTGGAT+TGG | 0.350270 | 1.1:+2557130 | MS.gene24318:CDS |
CCAAATCTTGCAGTTGTTGC+CGG | 0.353767 | 1.1:-2557095 | None:intergenic |
ATGCAACTGAAAGTTAAATA+AGG | 0.360551 | 1.1:-2557168 | None:intergenic |
GGAGCTGCTGGTTTCCCTTA+CGG | 0.366108 | 1.1:+2557218 | MS.gene24318:CDS |
GTTGGCCTTGTCTTTACAAA+TGG | 0.380746 | 1.1:+2556832 | MS.gene24318:CDS |
TCCGAGGTCGAAATCTATTC+CGG | 0.384427 | 1.1:+2556956 | MS.gene24318:CDS |
AGAAATTGGTTCCTTTATAT+GGG | 0.388973 | 1.1:+2556913 | MS.gene24318:CDS |
GTCTTTCCTCTCCCATATAA+AGG | 0.393313 | 1.1:-2556924 | None:intergenic |
GCCATGTATGGTGGAGCTGC+TGG | 0.395626 | 1.1:+2557206 | MS.gene24318:CDS |
TACTCGAGTAAGGAGGGCTT+GGG | 0.406878 | 1.1:-2556716 | None:intergenic |
CTGCCGGATTTGGTGGATTG+GGG | 0.407237 | 1.1:+2557132 | MS.gene24318:CDS |
CGGCAACAACTGCAAGATTT+GGG | 0.413932 | 1.1:+2557096 | MS.gene24318:CDS |
TCAATCATCGCTTTACAAAC+CGG | 0.418409 | 1.1:-2556885 | None:intergenic |
TTTCACGGTGGGGCCATGTA+TGG | 0.430081 | 1.1:+2557194 | MS.gene24318:CDS |
TTATTATTATTACTCGAGTA+AGG | 0.430340 | 1.1:-2556726 | None:intergenic |
CAACATGGATTTGGATTCAC+AGG | 0.439413 | 1.1:+2557053 | MS.gene24318:CDS |
AATAATAATAACAGTGATGC+TGG | 0.448158 | 1.1:+2556738 | MS.gene24318:CDS |
ACATTTGCTGCCGGATTTGG+TGG | 0.448518 | 1.1:+2557125 | MS.gene24318:CDS |
TTACTCGAGTAAGGAGGGCT+TGG | 0.452550 | 1.1:-2556717 | None:intergenic |
CTCCCAGTCACGAGAATGCC+CGG | 0.453449 | 1.1:+2556866 | MS.gene24318:CDS |
CCGAGGTCGAAATCTATTCC+GGG | 0.463757 | 1.1:+2556957 | MS.gene24318:CDS |
AAACCGGGCATTCTCGTGAC+TGG | 0.466413 | 1.1:-2556869 | None:intergenic |
TTATTTAACTTTCAGTTGCA+TGG | 0.466871 | 1.1:+2557170 | MS.gene24318:CDS |
GTGTGGTACTTGCTTTACTT+TGG | 0.475767 | 1.1:+2557348 | MS.gene24318:CDS |
GATCCTATTATTACTTTGTG+TGG | 0.482342 | 1.1:+2556798 | MS.gene24318:CDS |
TTGGTTCCTTTATATGGGAG+AGG | 0.500872 | 1.1:+2556918 | MS.gene24318:CDS |
GGGAATTTCACATTTGCTGC+CGG | 0.503544 | 1.1:+2557116 | MS.gene24318:CDS |
ACCAGCAGCTCCACCATACA+TGG | 0.508328 | 1.1:-2557207 | None:intergenic |
AATATCCCTCATCGTCCTGC+CGG | 0.511349 | 1.1:+2556984 | MS.gene24318:CDS |
CACGGTGGGGCCATGTATGG+TGG | 0.514031 | 1.1:+2557197 | MS.gene24318:CDS |
AAAGGATTTGATTCAGGTGG+AGG | 0.516952 | 1.1:-2557026 | None:intergenic |
TGCCGGATTTGGTGGATTGG+GGG | 0.524202 | 1.1:+2557133 | MS.gene24318:CDS |
TATCCTCTGCACACAGGTCA+AGG | 0.531811 | 1.1:+2557278 | MS.gene24318:CDS |
GTTTCAGGTCTCTGACCGGC+AGG | 0.546908 | 1.1:-2556999 | None:intergenic |
TATTATTACTCGAGTAAGGA+GGG | 0.550496 | 1.1:-2556722 | None:intergenic |
TGCAGTTTCAGGTCTCTGAC+CGG | 0.558086 | 1.1:-2557003 | None:intergenic |
GGATTCACAGGTGGATTAGG+GGG | 0.558493 | 1.1:+2557065 | MS.gene24318:CDS |
CAATCATCGCTTTACAAACC+GGG | 0.560492 | 1.1:-2556884 | None:intergenic |
CATGGATTTGGATTCACAGG+TGG | 0.560706 | 1.1:+2557056 | MS.gene24318:CDS |
ACAGATGGCAAGTGGGTTTG+GGG | 0.562002 | 1.1:+2556674 | None:intergenic |
CTCTGACCGGCAGGACGATG+AGG | 0.563898 | 1.1:-2556990 | None:intergenic |
AACAAGATTATTATCTGAAG+AGG | 0.566850 | 1.1:+2557303 | MS.gene24318:CDS |
AACCGGGCATTCTCGTGACT+GGG | 0.572439 | 1.1:-2556868 | None:intergenic |
ACTCGAGTAAGGAGGGCTTG+GGG | 0.581186 | 1.1:-2556715 | None:intergenic |
AACTGAAAGTTAAATAAGGA+TGG | 0.582621 | 1.1:-2557164 | None:intergenic |
TTATTATTACTCGAGTAAGG+AGG | 0.589072 | 1.1:-2556723 | None:intergenic |
AATGCATTAGAAAACCCGTA+AGG | 0.589553 | 1.1:-2557233 | None:intergenic |
GCCGGATTTGGTGGATTGGG+GGG | 0.591932 | 1.1:+2557134 | MS.gene24318:CDS |
CTCGAGTAAGGAGGGCTTGG+GGG | 0.592036 | 1.1:-2556714 | None:intergenic |
ATGCATTAGAAAACCCGTAA+GGG | 0.595923 | 1.1:-2557232 | None:intergenic |
TGCCCTTGACCTGTGTGCAG+AGG | 0.596436 | 1.1:-2557281 | None:intergenic |
ATCCTCTGCACACAGGTCAA+GGG | 0.610816 | 1.1:+2557279 | MS.gene24318:CDS |
TCTGACCGGCAGGACGATGA+GGG | 0.614884 | 1.1:-2556989 | None:intergenic |
CCCGGAATAGATTTCGACCT+CGG | 0.616864 | 1.1:-2556957 | None:intergenic |
TGGATTCACAGGTGGATTAG+GGG | 0.620475 | 1.1:+2557064 | MS.gene24318:CDS |
GGTTTGGGGAATCAACAAGC+AGG | 0.622199 | 1.1:+2556688 | MS.gene24318:CDS |
CATAGATATCCTCTGCACAC+AGG | 0.625097 | 1.1:+2557272 | MS.gene24318:CDS |
CGATGAGGGATATTAACACC+CGG | 0.632199 | 1.1:-2556975 | None:intergenic |
GGTTTGTAAAGCGATGATTG+AGG | 0.642603 | 1.1:+2556887 | MS.gene24318:CDS |
TTGTAAAGCGATGATTGAGG+AGG | 0.645599 | 1.1:+2556890 | MS.gene24318:CDS |
TGAAGCCATTTGTAAAGACA+AGG | 0.646514 | 1.1:-2556837 | None:intergenic |
GCAGAGGATATCTATGAACA+TGG | 0.651368 | 1.1:-2557265 | None:intergenic |
GAAAGACTTCAACTGATCCG+AGG | 0.691424 | 1.1:+2556940 | MS.gene24318:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTATTATTACTCGAGTA+AGG | - | chr1.1:2556729-2556748 | None:intergenic | 20.0% |
! | AACAAGATTATTATCTGAAG+AGG | + | chr1.1:2557303-2557322 | MS.gene24318:CDS | 25.0% |
! | AACTGAAAGTTAAATAAGGA+TGG | - | chr1.1:2557167-2557186 | None:intergenic | 25.0% |
! | AATAATAATAACAGTGATGC+TGG | + | chr1.1:2556738-2556757 | MS.gene24318:CDS | 25.0% |
! | ATGCAACTGAAAGTTAAATA+AGG | - | chr1.1:2557171-2557190 | None:intergenic | 25.0% |
!! | AGAAATTGGTTCCTTTATAT+GGG | + | chr1.1:2556913-2556932 | MS.gene24318:CDS | 25.0% |
!! | TTATTTAACTTTCAGTTGCA+TGG | + | chr1.1:2557170-2557189 | MS.gene24318:CDS | 25.0% |
!!! | GATGTTTGTTATTTTTTGTG+TGG | + | chr1.1:2557331-2557350 | MS.gene24318:CDS | 25.0% |
GATCCTATTATTACTTTGTG+TGG | + | chr1.1:2556798-2556817 | MS.gene24318:CDS | 30.0% | |
TATTATTACTCGAGTAAGGA+GGG | - | chr1.1:2556725-2556744 | None:intergenic | 30.0% | |
TGACCACACAAAGTAATAAT+AGG | - | chr1.1:2556804-2556823 | None:intergenic | 30.0% | |
TGAGAAAAAGGATTTGATTC+AGG | - | chr1.1:2557035-2557054 | None:intergenic | 30.0% | |
TTATTATTACTCGAGTAAGG+AGG | - | chr1.1:2556726-2556745 | None:intergenic | 30.0% | |
! | GAGAAATTGGTTCCTTTATA+TGG | + | chr1.1:2556912-2556931 | MS.gene24318:CDS | 30.0% |
! | TCAAATCCTTTTTCTCAACA+TGG | + | chr1.1:2557038-2557057 | MS.gene24318:CDS | 30.0% |
AATGCATTAGAAAACCCGTA+AGG | - | chr1.1:2557236-2557255 | None:intergenic | 35.0% | |
ATGCATTAGAAAACCCGTAA+GGG | - | chr1.1:2557235-2557254 | None:intergenic | 35.0% | |
CCAAATCCATGTTGAGAAAA+AGG | - | chr1.1:2557047-2557066 | None:intergenic | 35.0% | |
GAAAAAGGATTTGATTCAGG+TGG | - | chr1.1:2557032-2557051 | None:intergenic | 35.0% | |
TCAATCATCGCTTTACAAAC+CGG | - | chr1.1:2556888-2556907 | None:intergenic | 35.0% | |
TGAAGCCATTTGTAAAGACA+AGG | - | chr1.1:2556840-2556859 | None:intergenic | 35.0% | |
! | CCTTTTTCTCAACATGGATT+TGG | + | chr1.1:2557044-2557063 | MS.gene24318:CDS | 35.0% |
! | GGGTTTTCTAATGCATTTCA+CGG | + | chr1.1:2557239-2557258 | MS.gene24318:CDS | 35.0% |
! | TTTCAGTTGCATGGTTTTCA+CGG | + | chr1.1:2557179-2557198 | MS.gene24318:CDS | 35.0% |
! | TTTTCTAATGCATTTCACGG+TGG | + | chr1.1:2557242-2557261 | MS.gene24318:CDS | 35.0% |
AAAGGATTTGATTCAGGTGG+AGG | - | chr1.1:2557029-2557048 | None:intergenic | 40.0% | |
CAACATGGATTTGGATTCAC+AGG | + | chr1.1:2557053-2557072 | MS.gene24318:CDS | 40.0% | |
CAATCATCGCTTTACAAACC+GGG | - | chr1.1:2556887-2556906 | None:intergenic | 40.0% | |
GATGATTGAGGAGGAGAAAT+TGG | + | chr1.1:2556899-2556918 | MS.gene24318:CDS | 40.0% | |
GCAGAGGATATCTATGAACA+TGG | - | chr1.1:2557268-2557287 | None:intergenic | 40.0% | |
GGTTTGTAAAGCGATGATTG+AGG | + | chr1.1:2556887-2556906 | MS.gene24318:CDS | 40.0% | |
GTCTTTCCTCTCCCATATAA+AGG | - | chr1.1:2556927-2556946 | None:intergenic | 40.0% | |
GTGTGGTACTTGCTTTACTT+TGG | + | chr1.1:2557348-2557367 | MS.gene24318:CDS | 40.0% | |
TTGGTTCCTTTATATGGGAG+AGG | + | chr1.1:2556918-2556937 | MS.gene24318:CDS | 40.0% | |
TTGTAAAGCGATGATTGAGG+AGG | + | chr1.1:2556890-2556909 | MS.gene24318:CDS | 40.0% | |
! | TGTGTGGTCATCTTTTCTGT+TGG | + | chr1.1:2556814-2556833 | MS.gene24318:CDS | 40.0% |
! | TTTGGATTCACAGGTGGATT+AGG | + | chr1.1:2557062-2557081 | MS.gene24318:CDS | 40.0% |
!! | GTTGGCCTTGTCTTTACAAA+TGG | + | chr1.1:2556832-2556851 | MS.gene24318:CDS | 40.0% |
!! | TTGGATTCACAGGTGGATTA+GGG | + | chr1.1:2557063-2557082 | MS.gene24318:CDS | 40.0% |
CATAGATATCCTCTGCACAC+AGG | + | chr1.1:2557272-2557291 | MS.gene24318:CDS | 45.0% | |
CATGGATTTGGATTCACAGG+TGG | + | chr1.1:2557056-2557075 | MS.gene24318:CDS | 45.0% | |
CCAAATCTTGCAGTTGTTGC+CGG | - | chr1.1:2557098-2557117 | None:intergenic | 45.0% | |
CGATGAGGGATATTAACACC+CGG | - | chr1.1:2556978-2556997 | None:intergenic | 45.0% | |
CGGCAACAACTGCAAGATTT+GGG | + | chr1.1:2557096-2557115 | MS.gene24318:CDS | 45.0% | |
GAAAGACTTCAACTGATCCG+AGG | + | chr1.1:2556940-2556959 | MS.gene24318:CDS | 45.0% | |
TCCGAGGTCGAAATCTATTC+CGG | + | chr1.1:2556956-2556975 | MS.gene24318:CDS | 45.0% | |
! | AGTTGCATGGTTTTCACGGT+GGG | + | chr1.1:2557183-2557202 | MS.gene24318:CDS | 45.0% |
! | GGGAATTTCACATTTGCTGC+CGG | + | chr1.1:2557116-2557135 | MS.gene24318:CDS | 45.0% |
! | TGGATTAGGGGGATTTGTAC+CGG | + | chr1.1:2557076-2557095 | MS.gene24318:CDS | 45.0% |
! | TTCACATTTGCTGCCGGATT+TGG | + | chr1.1:2557122-2557141 | MS.gene24318:CDS | 45.0% |
!! | TGGATTCACAGGTGGATTAG+GGG | + | chr1.1:2557064-2557083 | MS.gene24318:CDS | 45.0% |
AATATCCCTCATCGTCCTGC+CGG | + | chr1.1:2556984-2557003 | MS.gene24318:CDS | 50.0% | |
ATCCTCTGCACACAGGTCAA+GGG | + | chr1.1:2557279-2557298 | MS.gene24318:CDS | 50.0% | |
CCCGGAATAGATTTCGACCT+CGG | - | chr1.1:2556960-2556979 | None:intergenic | 50.0% | |
CCGAGGTCGAAATCTATTCC+GGG | + | chr1.1:2556957-2556976 | MS.gene24318:CDS | 50.0% | |
CCGGCAACAACTGCAAGATT+TGG | + | chr1.1:2557095-2557114 | MS.gene24318:CDS | 50.0% | |
GGTTTGGGGAATCAACAAGC+AGG | + | chr1.1:2556688-2556707 | MS.gene24318:CDS | 50.0% | |
TACTCGAGTAAGGAGGGCTT+GGG | - | chr1.1:2556719-2556738 | None:intergenic | 50.0% | |
TATCCTCTGCACACAGGTCA+AGG | + | chr1.1:2557278-2557297 | MS.gene24318:CDS | 50.0% | |
TTACTCGAGTAAGGAGGGCT+TGG | - | chr1.1:2556720-2556739 | None:intergenic | 50.0% | |
! | ACATTTGCTGCCGGATTTGG+TGG | + | chr1.1:2557125-2557144 | MS.gene24318:CDS | 50.0% |
! | CAGTTGCATGGTTTTCACGG+TGG | + | chr1.1:2557182-2557201 | MS.gene24318:CDS | 50.0% |
! | GTTGCATGGTTTTCACGGTG+GGG | + | chr1.1:2557184-2557203 | MS.gene24318:CDS | 50.0% |
! | TGCAGTTTCAGGTCTCTGAC+CGG | - | chr1.1:2557006-2557025 | None:intergenic | 50.0% |
!! | GGATTCACAGGTGGATTAGG+GGG | + | chr1.1:2557065-2557084 | MS.gene24318:CDS | 50.0% |
AAACCGGGCATTCTCGTGAC+TGG | - | chr1.1:2556872-2556891 | None:intergenic | 55.0% | |
AACCGGGCATTCTCGTGACT+GGG | - | chr1.1:2556871-2556890 | None:intergenic | 55.0% | |
ACCAGCAGCTCCACCATACA+TGG | - | chr1.1:2557210-2557229 | None:intergenic | 55.0% | |
ACTCGAGTAAGGAGGGCTTG+GGG | - | chr1.1:2556718-2556737 | None:intergenic | 55.0% | |
TCCCCCCAATCCACCAAATC+CGG | - | chr1.1:2557138-2557157 | None:intergenic | 55.0% | |
TTTCACGGTGGGGCCATGTA+TGG | + | chr1.1:2557194-2557213 | MS.gene24318:CDS | 55.0% | |
! | TCAGGTGGAGGTGCAGTTTC+AGG | - | chr1.1:2557017-2557036 | None:intergenic | 55.0% |
!! | CTGCCGGATTTGGTGGATTG+GGG | + | chr1.1:2557132-2557151 | MS.gene24318:CDS | 55.0% |
!! | GAGCTGCTGGTTTCCCTTAC+GGG | + | chr1.1:2557219-2557238 | MS.gene24318:CDS | 55.0% |
!! | GCTGCCGGATTTGGTGGATT+GGG | + | chr1.1:2557131-2557150 | MS.gene24318:CDS | 55.0% |
!! | GGAGCTGCTGGTTTCCCTTA+CGG | + | chr1.1:2557218-2557237 | MS.gene24318:CDS | 55.0% |
!! | TGCCGGATTTGGTGGATTGG+GGG | + | chr1.1:2557133-2557152 | MS.gene24318:CDS | 55.0% |
!! | TGCTGCCGGATTTGGTGGAT+TGG | + | chr1.1:2557130-2557149 | MS.gene24318:CDS | 55.0% |
CTCCCAGTCACGAGAATGCC+CGG | + | chr1.1:2556866-2556885 | MS.gene24318:CDS | 60.0% | |
CTCGAGTAAGGAGGGCTTGG+GGG | - | chr1.1:2556717-2556736 | None:intergenic | 60.0% | |
TCTGACCGGCAGGACGATGA+GGG | - | chr1.1:2556992-2557011 | None:intergenic | 60.0% | |
TGCCCTTGACCTGTGTGCAG+AGG | - | chr1.1:2557284-2557303 | None:intergenic | 60.0% | |
! | GCCATGTATGGTGGAGCTGC+TGG | + | chr1.1:2557206-2557225 | MS.gene24318:CDS | 60.0% |
! | GTTTCAGGTCTCTGACCGGC+AGG | - | chr1.1:2557002-2557021 | None:intergenic | 60.0% |
!! | GCCGGATTTGGTGGATTGGG+GGG | + | chr1.1:2557134-2557153 | MS.gene24318:CDS | 60.0% |
CACGGTGGGGCCATGTATGG+TGG | + | chr1.1:2557197-2557216 | MS.gene24318:CDS | 65.0% | |
CTCTGACCGGCAGGACGATG+AGG | - | chr1.1:2556993-2557012 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 2556678 | 2557376 | 2556678 | ID=MS.gene24318 |
chr1.1 | mRNA | 2556678 | 2557376 | 2556678 | ID=MS.gene24318.t1;Parent=MS.gene24318 |
chr1.1 | exon | 2556678 | 2557376 | 2556678 | ID=MS.gene24318.t1.exon1;Parent=MS.gene24318.t1 |
chr1.1 | CDS | 2556678 | 2557376 | 2556678 | ID=cds.MS.gene24318.t1;Parent=MS.gene24318.t1 |
Gene Sequence |
Protein sequence |