Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24632.t1 | XP_024631230.1 | 98.7 | 473 | 6 | 0 | 1 | 473 | 1 | 473 | 1.00E-269 | 938.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24632.t1 | Q9SRE5 | 58.4 | 476 | 141 | 10 | 1 | 471 | 1 | 424 | 9.6e-131 | 468.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24632.t1 | A0A396JLZ8 | 98.7 | 473 | 6 | 0 | 1 | 473 | 1 | 473 | 7.5e-270 | 938.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050710 | MS.gene24632 | 0.806767 | 7.01E-50 | -1.69E-46 |
| MS.gene053108 | MS.gene24632 | 0.835953 | 1.24E-56 | -1.69E-46 |
| MS.gene056618 | MS.gene24632 | 0.823638 | 1.24E-53 | -1.69E-46 |
| MS.gene057669 | MS.gene24632 | 0.813369 | 2.65E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24632.t1 | MTR_1g026560 | 98.698 | 461 | 6 | 0 | 13 | 473 | 24 | 484 | 0.0 | 944 |
| MS.gene24632.t1 | MTR_6g045493 | 45.133 | 226 | 112 | 4 | 1 | 219 | 20 | 240 | 2.55e-40 | 151 |
| MS.gene24632.t1 | MTR_8g098495 | 47.030 | 202 | 95 | 5 | 13 | 208 | 42 | 237 | 6.27e-38 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24632.t1 | AT1G76660 | 58.824 | 476 | 139 | 11 | 1 | 471 | 1 | 424 | 5.35e-172 | 490 |
| MS.gene24632.t1 | AT1G76660 | 54.521 | 365 | 114 | 9 | 111 | 471 | 1 | 317 | 1.48e-116 | 345 |
| MS.gene24632.t1 | AT5G52430 | 43.421 | 228 | 108 | 8 | 9 | 221 | 28 | 249 | 5.29e-35 | 135 |
| MS.gene24632.t1 | AT1G63720 | 35.206 | 267 | 154 | 6 | 12 | 274 | 35 | 286 | 2.92e-31 | 124 |
| MS.gene24632.t1 | AT4G25620 | 41.228 | 228 | 107 | 10 | 1 | 215 | 20 | 233 | 2.32e-22 | 99.8 |
Find 0 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATATTTAAGGATAAAAT+TGG | + | 6095:42594-42613 | None:intergenic | 15.0% |
| !! | TTAAAATTTGATGAGAAATT+GGG | + | 6095:40152-40171 | None:intergenic | 15.0% |
| !!! | ATGTTTTATGGAAATTAAAT+AGG | - | 6095:39784-39803 | MS.gene24632:CDS | 15.0% |
| !!! | TGAAATTTTAAGCTTTTTTA+GGG | + | 6095:40930-40949 | None:intergenic | 15.0% |
| !!! | TTTAAAATTTGATGAGAAAT+TGG | + | 6095:40153-40172 | None:intergenic | 15.0% |
| !!! | TTTTATTGTTATAACATGTT+AGG | + | 6095:40239-40258 | None:intergenic | 15.0% |
| !! | AATCGAAAATGTTAAATAGA+AGG | + | 6095:39564-39583 | None:intergenic | 20.0% |
| !! | AGAAAGATTGTATAAGTATT+AGG | + | 6095:40646-40665 | None:intergenic | 20.0% |
| !! | AGTAAGTGATTAACATAATA+TGG | - | 6095:39452-39471 | MS.gene24632:intron | 20.0% |
| !! | GAAGATATATTCTCAAAAAT+GGG | - | 6095:42707-42726 | MS.gene24632:intron | 20.0% |
| !! | TATTACAAAATTAAATGACC+TGG | + | 6095:40547-40566 | None:intergenic | 20.0% |
| !! | TGAAGATATATTCTCAAAAA+TGG | - | 6095:42706-42725 | MS.gene24632:intron | 20.0% |
| !!! | CTGAAATTTTAAGCTTTTTT+AGG | + | 6095:40931-40950 | None:intergenic | 20.0% |
| !!! | TATGTTGTAGTTACTTTTAA+TGG | - | 6095:42437-42456 | MS.gene24632:intron | 20.0% |
| !!! | TCTATTTAACATTTTCGATT+TGG | - | 6095:39564-39583 | MS.gene24632:intron | 20.0% |
| !!! | TTTCTCATCAAATTTTAAAC+TGG | - | 6095:40154-40173 | MS.gene24632:CDS | 20.0% |
| ! | AAGAAAATCTTCAGTCAAAT+TGG | - | 6095:40465-40484 | MS.gene24632:CDS | 25.0% |
| ! | AATGTTAAATAGAAGGAATC+TGG | + | 6095:39557-39576 | None:intergenic | 25.0% |
| ! | AGGAGAGTAAATTAATAACT+GGG | - | 6095:40427-40446 | MS.gene24632:CDS | 25.0% |
| ! | ATAAACAAGAAAAGCAAAAG+AGG | + | 6095:39708-39727 | None:intergenic | 25.0% |
| ! | ATAATGCTAACATAAACAAG+AGG | - | 6095:39618-39637 | MS.gene24632:intron | 25.0% |
| ! | ATTAAGTGTTTCAAAAGACT+CGG | - | 6095:41873-41892 | MS.gene24632:intron | 25.0% |
| ! | CAGACTTATTCAATTAGATT+TGG | + | 6095:39988-40007 | None:intergenic | 25.0% |
| ! | GATAATGACAAAAAACAACT+TGG | + | 6095:41304-41323 | None:intergenic | 25.0% |
| ! | GCAAGAAAGAAACATATTTA+AGG | + | 6095:42604-42623 | None:intergenic | 25.0% |
| ! | TAGGAGAGTAAATTAATAAC+TGG | - | 6095:40426-40445 | MS.gene24632:CDS | 25.0% |
| ! | TATAAGTATTAGGAAGTCAA+CGG | + | 6095:40636-40655 | None:intergenic | 25.0% |
| ! | TATACTATATCCCAACATAA+TGG | + | 6095:40201-40220 | None:intergenic | 25.0% |
| ! | TATTAACTGTTCCAAACATA+TGG | + | 6095:40853-40872 | None:intergenic | 25.0% |
| ! | TATTACATCTTGAGAAATTG+TGG | - | 6095:42283-42302 | MS.gene24632:intron | 25.0% |
| ! | TTGAAGAGATTAATATGTGT+AGG | + | 6095:40704-40723 | None:intergenic | 25.0% |
| ! | TTGAATTCTTTCATCAATGA+AGG | + | 6095:42117-42136 | None:intergenic | 25.0% |
| ! | TTTCTCATGATACATTTGAA+AGG | + | 6095:40106-40125 | None:intergenic | 25.0% |
| !! | ATATGTTTGGAACAGTTAAT+AGG | - | 6095:40852-40871 | MS.gene24632:CDS | 25.0% |
| !! | ATGATACATTTGAAAGGTTT+TGG | + | 6095:40100-40119 | None:intergenic | 25.0% |
| !! | CTTTTTGTATACATACATAC+AGG | + | 6095:39411-39430 | None:intergenic | 25.0% |
| !! | TACAATCTTTCTCTTTTCTT+CGG | - | 6095:40654-40673 | MS.gene24632:CDS | 25.0% |
| !! | TTTGTAAATCTAAAACTCCA+AGG | + | 6095:40385-40404 | None:intergenic | 25.0% |
| !!! | AACAATGCTTTTTATCTACT+AGG | + | 6095:40281-40300 | None:intergenic | 25.0% |
| !!! | AATGAGATATTTTTGCTAAC+TGG | + | 6095:39895-39914 | None:intergenic | 25.0% |
| !!! | AATGCTTTTTATTCTCAACA+AGG | + | 6095:40025-40044 | None:intergenic | 25.0% |
| !!! | TACTCTTATTTTGAAAGAGA+GGG | + | 6095:42497-42516 | None:intergenic | 25.0% |
| AAAGTAACTACAACATACCA+AGG | + | 6095:42434-42453 | None:intergenic | 30.0% | |
| AAGCAACGAAAGGTTATTTA+TGG | + | 6095:39364-39383 | None:intergenic | 30.0% | |
| AATCAAATTCCTGTATGTGA+TGG | - | 6095:42216-42235 | MS.gene24632:intron | 30.0% | |
| AATCTGCAGGAAATATCAAA+TGG | - | 6095:42739-42758 | MS.gene24632:intron | 30.0% | |
| AATCTGGAAAAGAGTAAGTT+GGG | + | 6095:39541-39560 | None:intergenic | 30.0% | |
| AGAGTAAATTAATAACTGGG+GGG | - | 6095:40430-40449 | MS.gene24632:CDS | 30.0% | |
| ATCTGCAGGAAATATCAAAT+GGG | - | 6095:42740-42759 | MS.gene24632:intron | 30.0% | |
| CATGTTAGGATATAGTGTAA+TGG | + | 6095:40225-40244 | None:intergenic | 30.0% | |
| CATTTCTCCCAGAAATATAT+TGG | - | 6095:39911-39930 | MS.gene24632:CDS | 30.0% | |
| CTGAAAATGGAAAATATCAG+AGG | - | 6095:41713-41732 | MS.gene24632:intron | 30.0% | |
| GAAAACTGTTCCATTATGTT+GGG | - | 6095:40188-40207 | MS.gene24632:CDS | 30.0% | |
| GACAGGATATTATATGGTAA+TGG | + | 6095:40069-40088 | None:intergenic | 30.0% | |
| GAGAGTAAATTAATAACTGG+GGG | - | 6095:40429-40448 | MS.gene24632:CDS | 30.0% | |
| GGAAAAGACAGGATATTATA+TGG | + | 6095:40075-40094 | None:intergenic | 30.0% | |
| GGAGAGTAAATTAATAACTG+GGG | - | 6095:40428-40447 | MS.gene24632:CDS | 30.0% | |
| TACCTATGCACAATTCTATT+TGG | - | 6095:41816-41835 | MS.gene24632:intron | 30.0% | |
| TCCTTGATATTGGAGATATA+AGG | + | 6095:41621-41640 | None:intergenic | 30.0% | |
| TCGATTTCCACAAAATGAAA+GGG | - | 6095:39168-39187 | MS.gene24632:CDS | 30.0% | |
| TCTCGTATTCCTGATAATAA+TGG | - | 6095:41142-41161 | MS.gene24632:intron | 30.0% | |
| TGGAAGTTTATTCTCAATTC+CGG | + | 6095:40049-40068 | None:intergenic | 30.0% | |
| TTAAATGAAAGACTTTGCCT+TGG | - | 6095:40365-40384 | MS.gene24632:CDS | 30.0% | |
| TTCCATAAAACATTCAATCC+AGG | + | 6095:39777-39796 | None:intergenic | 30.0% | |
| TTTGTCGCCAATATATTTCT+GGG | + | 6095:39921-39940 | None:intergenic | 30.0% | |
| ! | ACAATCTTTCTCTTTTCTTC+GGG | - | 6095:40655-40674 | MS.gene24632:CDS | 30.0% |
| ! | ATAGTTACCCTTTCATTTTG+TGG | + | 6095:39178-39197 | None:intergenic | 30.0% |
| ! | ATCGATTTCCACAAAATGAA+AGG | - | 6095:39167-39186 | MS.gene24632:CDS | 30.0% |
| ! | ATGAAGGTATGCTGTAAAAA+CGG | - | 6095:42241-42260 | MS.gene24632:intron | 30.0% |
| ! | CTCTGATATTTTCCATTTTC+AGG | + | 6095:41715-41734 | None:intergenic | 30.0% |
| ! | GAAGTATTTAGCCATATGTT+TGG | - | 6095:40839-40858 | MS.gene24632:CDS | 30.0% |
| ! | TACCTGGATTGAATGTTTTA+TGG | - | 6095:39772-39791 | MS.gene24632:CDS | 30.0% |
| ! | TTTTCGTAGAAAATTGCATG+TGG | - | 6095:40727-40746 | MS.gene24632:CDS | 30.0% |
| ! | TTTTGTCGCCAATATATTTC+TGG | + | 6095:39922-39941 | None:intergenic | 30.0% |
| !! | TACATTTGAAAGGTTTTGGT+TGG | + | 6095:40096-40115 | None:intergenic | 30.0% |
| !! | TTGAGAATAAAAAGCATTGC+CGG | - | 6095:40027-40046 | MS.gene24632:CDS | 30.0% |
| !! | TTGTGGAAATCGATTTTGTT+CGG | + | 6095:39161-39180 | None:intergenic | 30.0% |
| !!! | CTACTCTTATTTTGAAAGAG+AGG | + | 6095:42498-42517 | None:intergenic | 30.0% |
| !!! | GTGTTTTAGGATCTAAGTTT+TGG | + | 6095:40754-40773 | None:intergenic | 30.0% |
| !!! | TTAACATTTTCGATTTGGCA+AGG | - | 6095:39569-39588 | MS.gene24632:intron | 30.0% |
| AAATCTCAAAAATGGTGGCA+AGG | - | 6095:41528-41547 | MS.gene24632:intron | 35.0% | |
| AAATTGGTCCATGTAGGTTA+AGG | - | 6095:40481-40500 | MS.gene24632:CDS | 35.0% | |
| AATCTCAAAAATGGTGGCAA+GGG | - | 6095:41529-41548 | MS.gene24632:intron | 35.0% | |
| AATGGAAAATATCAGAGGAC+TGG | - | 6095:41718-41737 | MS.gene24632:intron | 35.0% | |
| AATTGGTCCATGTAGGTTAA+GGG | - | 6095:40482-40501 | MS.gene24632:CDS | 35.0% | |
| ATGGAAAATATCAGAGGACT+GGG | - | 6095:41719-41738 | MS.gene24632:intron | 35.0% | |
| ATGTCAGATCATAAATCACC+GGG | - | 6095:42626-42645 | MS.gene24632:intron | 35.0% | |
| ATGTGAGATCTGAGCAAAAT+TGG | + | 6095:39304-39323 | None:intergenic | 35.0% | |
| ATTTCTTCCACATCTTGCTT+AGG | + | 6095:41949-41968 | None:intergenic | 35.0% | |
| CATGTCAGATCATAAATCAC+CGG | - | 6095:42625-42644 | MS.gene24632:intron | 35.0% | |
| CATTGACAGAGAAAAAGATG+GGG | - | 6095:41055-41074 | MS.gene24632:intron | 35.0% | |
| CGACACTAATGATGTTACTA+TGG | - | 6095:41762-41781 | MS.gene24632:intron | 35.0% | |
| GAATCTGGAAAAGAGTAAGT+TGG | + | 6095:39542-39561 | None:intergenic | 35.0% | |
| GATGTTAGAAAGTGAGCAAA+AGG | + | 6095:41502-41521 | None:intergenic | 35.0% | |
| GCCTTATATCTCCAATATCA+AGG | - | 6095:41617-41636 | MS.gene24632:intron | 35.0% | |
| GGAAAACTGTTCCATTATGT+TGG | - | 6095:40187-40206 | MS.gene24632:CDS | 35.0% | |
| GTAGTGAAATTTGAGAAGAC+TGG | + | 6095:41406-41425 | None:intergenic | 35.0% | |
| GTCCAAATAGAATTGTGCAT+AGG | + | 6095:41821-41840 | None:intergenic | 35.0% | |
| TACAAATGTCAAGAAGCTGA+TGG | - | 6095:40399-40418 | MS.gene24632:CDS | 35.0% | |
| TAGGTAGAAAGATGTTTGAG+AGG | - | 6095:40871-40890 | MS.gene24632:CDS | 35.0% | |
| TATTGGAGATATAAGGCTAC+TGG | + | 6095:41614-41633 | None:intergenic | 35.0% | |
| TCAGCAAATCTCAAAAATGG+TGG | - | 6095:41523-41542 | MS.gene24632:intron | 35.0% | |
| TCAGTGTAATTCTTAGTACC+TGG | - | 6095:39756-39775 | MS.gene24632:CDS | 35.0% | |
| TCATCACTGTATCCTGAAAA+TGG | - | 6095:41700-41719 | MS.gene24632:intron | 35.0% | |
| TCCTCAGCAAATCTCAAAAA+TGG | - | 6095:41520-41539 | MS.gene24632:intron | 35.0% | |
| TCTGCAGGAAATATCAAATG+GGG | - | 6095:42741-42760 | MS.gene24632:intron | 35.0% | |
| TGGAAGAAATAGAAGCTTAC+CGG | - | 6095:41959-41978 | MS.gene24632:intron | 35.0% | |
| TGGTTATGTAGTAACTAGAG+AGG | + | 6095:39281-39300 | None:intergenic | 35.0% | |
| TGTCAATGCAAGTCAAGAAA+GGG | + | 6095:41043-41062 | None:intergenic | 35.0% | |
| TGTTGTAACGTGACTGAAAA+CGG | + | 6095:39644-39663 | None:intergenic | 35.0% | |
| TTAATCTGCCACCATTATGA+GGG | + | 6095:41858-41877 | None:intergenic | 35.0% | |
| TTCATCCAATGAAGATTCGA+CGG | - | 6095:40597-40616 | MS.gene24632:CDS | 35.0% | |
| TTGAAAATCACGAGACAGTA+TGG | + | 6095:39489-39508 | None:intergenic | 35.0% | |
| TTGATATTTCCTGCAGATTC+TGG | + | 6095:42738-42757 | None:intergenic | 35.0% | |
| ! | AAAGCTACTCACTGTGTTTT+AGG | + | 6095:40767-40786 | None:intergenic | 35.0% |
| ! | ACAGTGAGTAGCTTTTATCT+TGG | - | 6095:40772-40791 | MS.gene24632:CDS | 35.0% |
| ! | GCATTGACAGAGAAAAAGAT+GGG | - | 6095:41054-41073 | MS.gene24632:intron | 35.0% |
| ! | TCCATGAGAGTATGATTATC+AGG | + | 6095:42683-42702 | None:intergenic | 35.0% |
| ! | TCTTGTTTCAGTTCACAGAA+AGG | - | 6095:41097-41116 | MS.gene24632:intron | 35.0% |
| ! | TGCATTGACAGAGAAAAAGA+TGG | - | 6095:41053-41072 | MS.gene24632:intron | 35.0% |
| ! | TTTGAAGTTGCTCTTCTCTA+TGG | + | 6095:42358-42377 | None:intergenic | 35.0% |
| ! | TTTTAAACTGGTTGTTCCAC+AGG | - | 6095:40166-40185 | MS.gene24632:CDS | 35.0% |
| !! | AATGGAGCACTGTATTAGTT+GGG | - | 6095:39860-39879 | MS.gene24632:CDS | 35.0% |
| !! | ATAATGGAACAGTTTTCCTG+TGG | + | 6095:40185-40204 | None:intergenic | 35.0% |
| !!! | ACCATTTTTGAGATTTGCTG+AGG | + | 6095:41524-41543 | None:intergenic | 35.0% |
| AAAAAGATGGGGAGGTTGTT+TGG | - | 6095:41066-41085 | MS.gene24632:intron | 40.0% | |
| AAAAGATGGGGAGGTTGTTT+GGG | - | 6095:41067-41086 | MS.gene24632:intron | 40.0% | |
| AACTCAACCCTTAACCTACA+TGG | + | 6095:40492-40511 | None:intergenic | 40.0% | |
| AATCACGAGACAGTATGGTA+TGG | + | 6095:39484-39503 | None:intergenic | 40.0% | |
| AATCCTCCATTCCCTCATAA+TGG | - | 6095:41844-41863 | MS.gene24632:intron | 40.0% | |
| AGAAATTTCTCCAACGTGAG+AGG | - | 6095:40121-40140 | MS.gene24632:CDS | 40.0% | |
| AGAAGCTTGCGAGAAAGAAA+GGG | - | 6095:42803-42822 | MS.gene24632:CDS | 40.0% | |
| AGAATTGTGCATAGGTAGCA+GGG | + | 6095:41813-41832 | None:intergenic | 40.0% | |
| AGCTGTGTTTCATGAGCATA+TGG | + | 6095:41373-41392 | None:intergenic | 40.0% | |
| ATATGCTCATGAAACACAGC+TGG | - | 6095:41372-41391 | MS.gene24632:intron | 40.0% | |
| ATGCAGAGGTTGACTATAGA+AGG | - | 6095:42777-42796 | MS.gene24632:intron | 40.0% | |
| ATTCAAAGCTCATGAGACTC+AGG | - | 6095:42131-42150 | MS.gene24632:intron | 40.0% | |
| CATAGTATCAGCGGAACAAT+AGG | - | 6095:39818-39837 | MS.gene24632:CDS | 40.0% | |
| CATCTCAATAACTAGAGCCT+TGG | - | 6095:42414-42433 | MS.gene24632:intron | 40.0% | |
| CATGCTTTGCATAGTATCAG+CGG | - | 6095:39809-39828 | MS.gene24632:CDS | 40.0% | |
| CCAAAGTAGAAAGCAACGAA+AGG | + | 6095:39374-39393 | None:intergenic | 40.0% | |
| CCTTCATATCCATCACATAC+AGG | + | 6095:42228-42247 | None:intergenic | 40.0% | |
| CGTGGAGATTTCTGATGTAA+TGG | - | 6095:42029-42048 | MS.gene24632:intron | 40.0% | |
| CTGGCTGATCCATTATTATC+AGG | + | 6095:41154-41173 | None:intergenic | 40.0% | |
| CTGTCAATGCAAGTCAAGAA+AGG | + | 6095:41044-41063 | None:intergenic | 40.0% | |
| CTTAATCTGCCACCATTATG+AGG | + | 6095:41859-41878 | None:intergenic | 40.0% | |
| GAAATTTCTCCAACGTGAGA+GGG | - | 6095:40122-40141 | MS.gene24632:CDS | 40.0% | |
| GCCTGATAATCATACTCTCA+TGG | - | 6095:42679-42698 | MS.gene24632:intron | 40.0% | |
| GGAAGAAATAGAAGCTTACC+GGG | - | 6095:41960-41979 | MS.gene24632:intron | 40.0% | |
| GTCGCATACATCGTATTTGA+AGG | + | 6095:41346-41365 | None:intergenic | 40.0% | |
| GTGAAATTTGAGAAGACTGG+AGG | + | 6095:41403-41422 | None:intergenic | 40.0% | |
| GTTTCAGTTCACAGAAAGGT+GGG | - | 6095:41101-41120 | MS.gene24632:intron | 40.0% | |
| TAGAAGTCCTAAGCAAGATG+TGG | - | 6095:41939-41958 | MS.gene24632:intron | 40.0% | |
| TAGAATTGTGCATAGGTAGC+AGG | + | 6095:41814-41833 | None:intergenic | 40.0% | |
| TATAACCACCAGTCAATACG+TGG | - | 6095:42011-42030 | MS.gene24632:intron | 40.0% | |
| TCAAATACGATGTATGCGAC+TGG | - | 6095:41346-41365 | MS.gene24632:intron | 40.0% | |
| TCACCAGAGTTCCTTGATAT+TGG | + | 6095:41631-41650 | None:intergenic | 40.0% | |
| TCAGTCAAATTGGTCCATGT+AGG | - | 6095:40475-40494 | MS.gene24632:CDS | 40.0% | |
| TCATCCAATGAAGATTCGAC+GGG | - | 6095:40598-40617 | MS.gene24632:CDS | 40.0% | |
| TCATTATCTGCAAACTCACC+TGG | - | 6095:41316-41335 | MS.gene24632:intron | 40.0% | |
| TCTATAGTCAACCTCTGCAT+CGG | + | 6095:42777-42796 | None:intergenic | 40.0% | |
| TCTCCAATATCAAGGAACTC+TGG | - | 6095:41625-41644 | MS.gene24632:intron | 40.0% | |
| TCTTGCTTAGGACTTCTAGA+AGG | + | 6095:41937-41956 | None:intergenic | 40.0% | |
| TGAGATCTGAGCAAAATTGG+TGG | + | 6095:39301-39320 | None:intergenic | 40.0% | |
| TGATGTTACTATGGCATCAC+AGG | - | 6095:41771-41790 | MS.gene24632:intron | 40.0% | |
| TGCAGAGGTTGACTATAGAA+GGG | - | 6095:42778-42797 | MS.gene24632:intron | 40.0% | |
| TGTTTCAGTTCACAGAAAGG+TGG | - | 6095:41100-41119 | MS.gene24632:intron | 40.0% | |
| TTATCAGGAATACGAGATGC+AGG | + | 6095:41139-41158 | None:intergenic | 40.0% | |
| TTGTTAAGTGAGCCAACTCT+GGG | + | 6095:41459-41478 | None:intergenic | 40.0% | |
| ! | AAGTGAGCAAAAGGTACATC+TGG | + | 6095:41493-41512 | None:intergenic | 40.0% |
| ! | AGAAATCTCCACGTATTGAC+TGG | + | 6095:42022-42041 | None:intergenic | 40.0% |
| ! | AGTGAGCAAAAGGTACATCT+GGG | + | 6095:41492-41511 | None:intergenic | 40.0% |
| ! | CCTTTCGTTGCTTTCTACTT+TGG | - | 6095:39371-39390 | MS.gene24632:intron | 40.0% |
| ! | TATGAGGGAATGGAGGATTT+TGG | + | 6095:41843-41862 | None:intergenic | 40.0% |
| !! | AAGTGTTGATATGTACCCCA+AGG | + | 6095:39953-39972 | None:intergenic | 40.0% |
| !! | ATTGATTTGCCAGAGGTCAA+GGG | + | 6095:42075-42094 | None:intergenic | 40.0% |
| !! | CCTGTATGTGATGGATATGA+AGG | - | 6095:42225-42244 | MS.gene24632:intron | 40.0% |
| !! | CTTTTCTTCGGGTTTGTGAT+TGG | - | 6095:40666-40685 | MS.gene24632:CDS | 40.0% |
| !! | GAATGGAGCACTGTATTAGT+TGG | - | 6095:39859-39878 | MS.gene24632:CDS | 40.0% |
| !! | TTCCATCATTGATTTGCCAG+AGG | + | 6095:42082-42101 | None:intergenic | 40.0% |
| !! | TTTCGATTTGGCAAGGTTGA+CGG | - | 6095:39576-39595 | MS.gene24632:intron | 40.0% |
| !!! | AGGTTTTGGTTGGAAAAGAC+AGG | + | 6095:40086-40105 | None:intergenic | 40.0% |
| AAAGCTCATGAGACTCAGGT+GGG | - | 6095:42135-42154 | MS.gene24632:intron | 45.0% | |
| AAATATCAGAGGACTGGGTC+TGG | - | 6095:41724-41743 | MS.gene24632:intron | 45.0% | |
| AATATCAGAGGACTGGGTCT+GGG | - | 6095:41725-41744 | MS.gene24632:intron | 45.0% | |
| ACAGTGATGAATCCCACTGT+GGG | + | 6095:41690-41709 | None:intergenic | 45.0% | |
| ACTACATATTCGCTCTACCC+TGG | - | 6095:41580-41599 | MS.gene24632:intron | 45.0% | |
| AGACTCGGATGCTCAATCTA+CGG | - | 6095:41888-41907 | MS.gene24632:intron | 45.0% | |
| AGCTATGCCTGTGACTTGAT+TGG | + | 6095:41209-41228 | None:intergenic | 45.0% | |
| AGGAAGGGCAGAATGTGTAA+AGG | + | 6095:41266-41285 | None:intergenic | 45.0% | |
| CAGAAGCTTGCGAGAAAGAA+AGG | - | 6095:42802-42821 | MS.gene24632:CDS | 45.0% | |
| CATCCAATGAAGATTCGACG+GGG | - | 6095:40599-40618 | MS.gene24632:CDS | 45.0% | |
| CGACAAAACAAACCAGCCTT+GGG | - | 6095:39934-39953 | MS.gene24632:CDS | 45.0% | |
| CTCATCTGCACTGAAACCAA+AGG | + | 6095:41989-42008 | None:intergenic | 45.0% | |
| CTTGGCATGACTAGTAGATG+CGG | - | 6095:40790-40809 | MS.gene24632:CDS | 45.0% | |
| GACAAAACAAACCAGCCTTG+GGG | - | 6095:39935-39954 | MS.gene24632:CDS | 45.0% | |
| GACCTCTGGCAAATCAATGA+TGG | - | 6095:42077-42096 | MS.gene24632:intron | 45.0% | |
| GAGCTGTTGCTACAATATCC+CGG | + | 6095:42647-42666 | None:intergenic | 45.0% | |
| GATCAGCCAGTCAACCAAAT+GGG | - | 6095:41164-41183 | MS.gene24632:intron | 45.0% | |
| GCAGAATGTGTAAAGGATGC+TGG | + | 6095:41259-41278 | None:intergenic | 45.0% | |
| GCAGAGGTTGACTATAGAAG+GGG | - | 6095:42779-42798 | MS.gene24632:intron | 45.0% | |
| GGATATTGTAGCAACAGCTC+TGG | - | 6095:42647-42666 | MS.gene24632:intron | 45.0% | |
| GTAAAGGATGCTGGTGAAGA+AGG | + | 6095:41250-41269 | None:intergenic | 45.0% | |
| GTGGAAATGGACATCAGAGT+AGG | - | 6095:41911-41930 | MS.gene24632:intron | 45.0% | |
| GTTGTTAAGTGAGCCAACTC+TGG | + | 6095:41460-41479 | None:intergenic | 45.0% | |
| TACAGTGATGAATCCCACTG+TGG | + | 6095:41691-41710 | None:intergenic | 45.0% | |
| TGACAGAGAAAAAGATGGGG+AGG | - | 6095:41058-41077 | MS.gene24632:intron | 45.0% | |
| TGACTGTGCAGTTGAAGGAA+GGG | + | 6095:41281-41300 | None:intergenic | 45.0% | |
| TGTTAAGTGAGCCAACTCTG+GGG | + | 6095:41458-41477 | None:intergenic | 45.0% | |
| TTATCTGCAAACTCACCTGG+CGG | - | 6095:41319-41338 | MS.gene24632:intron | 45.0% | |
| TTCTTTGCTTGCTTGCCAAC+TGG | + | 6095:42198-42217 | None:intergenic | 45.0% | |
| ! | AAAAGGTACATCTGGGGAAG+AGG | + | 6095:41485-41504 | None:intergenic | 45.0% |
| ! | AAAGGTACATCTGGGGAAGA+GGG | + | 6095:41484-41503 | None:intergenic | 45.0% |
| ! | AAGAGGCACAATAGATGAGC+AGG | + | 6095:39691-39710 | None:intergenic | 45.0% |
| ! | GTGAGCAAAAGGTACATCTG+GGG | + | 6095:41491-41510 | None:intergenic | 45.0% |
| ! | TCAAGAAGCTGATGGTGACT+AGG | - | 6095:40407-40426 | MS.gene24632:CDS | 45.0% |
| !! | AATCTCCACGTATTGACTGG+TGG | + | 6095:42019-42038 | None:intergenic | 45.0% |
| !! | CATTGATTTGCCAGAGGTCA+AGG | + | 6095:42076-42095 | None:intergenic | 45.0% |
| !!! | TTATTTTATAAAAGATAAAA+TGG | + | 6095:42557-42576 | None:intergenic | 5.0% |
| !!! | TTTTATTAATTTTTTTTGAA+TGG | - | 6095:39842-39861 | MS.gene24632:CDS | 5.0% |
| AAGGATGCTGGTGAAGAAGG+TGG | + | 6095:41247-41266 | None:intergenic | 50.0% | |
| ACACCCCGTCGAATCTTCAT+TGG | + | 6095:40605-40624 | None:intergenic | 50.0% | |
| ATCGTATTTGAAGGACCGCC+AGG | + | 6095:41337-41356 | None:intergenic | 50.0% | |
| ATTGGTCAACCCAGCCACTT+GGG | + | 6095:41191-41210 | None:intergenic | 50.0% | |
| CAAAGCTCATGAGACTCAGG+TGG | - | 6095:42134-42153 | MS.gene24632:intron | 50.0% | |
| CAAGCAGTCAAAGAGACACC+AGG | - | 6095:40526-40545 | MS.gene24632:CDS | 50.0% | |
| CACTGAAACCAAAGGATGCC+CGG | + | 6095:41981-42000 | None:intergenic | 50.0% | |
| CCACCATTATGAGGGAATGG+AGG | + | 6095:41850-41869 | None:intergenic | 50.0% | |
| CCTCCATTCCCTCATAATGG+TGG | - | 6095:41847-41866 | MS.gene24632:intron | 50.0% | |
| CTGCCACCATTATGAGGGAA+TGG | + | 6095:41853-41872 | None:intergenic | 50.0% | |
| GAAGGTGGAGCTAAGAGAGA+AGG | + | 6095:41232-41251 | None:intergenic | 50.0% | |
| GACTCGGATGCTCAATCTAC+GGG | - | 6095:41889-41908 | MS.gene24632:intron | 50.0% | |
| GAGAGGAGCAGTAGATGGTT+CGG | + | 6095:41428-41447 | None:intergenic | 50.0% | |
| GCGACAAAACAAACCAGCCT+TGG | - | 6095:39933-39952 | MS.gene24632:CDS | 50.0% | |
| GCTCAATCTACGGGTGGAAA+TGG | - | 6095:41898-41917 | MS.gene24632:intron | 50.0% | |
| GGAGATATAAGGCTACTGGC+AGG | + | 6095:41610-41629 | None:intergenic | 50.0% | |
| GGATCAGCCAGTCAACCAAA+TGG | - | 6095:41163-41182 | MS.gene24632:intron | 50.0% | |
| GGGTTGACCAATCAAGTCAC+AGG | - | 6095:41199-41218 | MS.gene24632:intron | 50.0% | |
| GTGACTGTGCAGTTGAAGGA+AGG | + | 6095:41282-41301 | None:intergenic | 50.0% | |
| GTTAAGTGAGCCAACTCTGG+GGG | + | 6095:41457-41476 | None:intergenic | 50.0% | |
| GTTATCATGCTCCGATGCAG+AGG | - | 6095:42763-42782 | MS.gene24632:intron | 50.0% | |
| GTTGATATGTACCCCAAGGC+TGG | + | 6095:39949-39968 | None:intergenic | 50.0% | |
| TGGGATCATCCAGAATCTGC+AGG | - | 6095:42726-42745 | MS.gene24632:intron | 50.0% | |
| TGTCAACCTCTTTCCCTGAG+CGG | - | 6095:41656-41675 | MS.gene24632:intron | 50.0% | |
| ! | CTTGGTGACTGTGCAGTTGA+AGG | + | 6095:41286-41305 | None:intergenic | 50.0% |
| AAACTCCCGCTCAGGGAAAG+AGG | + | 6095:41665-41684 | None:intergenic | 55.0% | |
| ACCATGATGCCCTTGACCTC+TGG | - | 6095:42063-42082 | MS.gene24632:intron | 55.0% | |
| CGATTAGACGCGAGTCCAGT+TGG | - | 6095:42180-42199 | MS.gene24632:intron | 55.0% | |
| CTGGACTCGCGTCTAATCGA+AGG | + | 6095:42179-42198 | None:intergenic | 55.0% | |
| GAAGCTTACCGGGCATCCTT+TGG | - | 6095:41970-41989 | MS.gene24632:intron | 55.0% | |
| GGAGTGAGAGGAGCAGTAGA+TGG | + | 6095:41433-41452 | None:intergenic | 55.0% | |
| GTCAACCTCTTTCCCTGAGC+GGG | - | 6095:41657-41676 | MS.gene24632:intron | 55.0% | |
| TCAACCAAATGGGCCCCAAG+TGG | - | 6095:41174-41193 | MS.gene24632:intron | 55.0% | |
| TCGGATGCTCAATCTACGGG+TGG | - | 6095:41892-41911 | MS.gene24632:intron | 55.0% | |
| TTGGGGCCCATTTGGTTGAC+TGG | + | 6095:41173-41192 | None:intergenic | 55.0% | |
| TTGGTCAACCCAGCCACTTG+GGG | + | 6095:41190-41209 | None:intergenic | 55.0% | |
| ! | GATTGGTCAACCCAGCCACT+TGG | + | 6095:41192-41211 | None:intergenic | 55.0% |
| ACTGGGTCTGGGAGGGTTTC+TGG | - | 6095:41736-41755 | MS.gene24632:intron | 60.0% | |
| AGGCTACTGGCAGGACTTCC+AGG | + | 6095:41601-41620 | None:intergenic | 60.0% | |
| ATCAGAGGACTGGGTCTGGG+AGG | - | 6095:41728-41747 | MS.gene24632:intron | 60.0% | |
| CAAATGGGCCCCAAGTGGCT+GGG | - | 6095:41179-41198 | MS.gene24632:intron | 60.0% | |
| CTGGGTCTGGGAGGGTTTCT+GGG | - | 6095:41737-41756 | MS.gene24632:intron | 60.0% | |
| GGCTACTGGCAGGACTTCCA+GGG | + | 6095:41600-41619 | None:intergenic | 60.0% | |
| TCAGAGGACTGGGTCTGGGA+GGG | - | 6095:41729-41748 | MS.gene24632:intron | 60.0% | |
| TCTCACTCCTCCCCCAGAGT+TGG | - | 6095:41444-41463 | MS.gene24632:intron | 60.0% | |
| TTGGGTGCACCCTCTCACGT+TGG | + | 6095:40134-40153 | None:intergenic | 60.0% | |
| ! | AACTCTGGGGGAGGAGTGAG+AGG | + | 6095:41445-41464 | None:intergenic | 60.0% |
| ! | AAGTGAGCCAACTCTGGGGG+AGG | + | 6095:41454-41473 | None:intergenic | 60.0% |
| !! | GCCAGAGGTCAAGGGCATCA+TGG | + | 6095:42067-42086 | None:intergenic | 60.0% |
| AGCGGGAGTTTCGCCCACAG+TGG | - | 6095:41674-41693 | MS.gene24632:intron | 65.0% | |
| CCAAATGGGCCCCAAGTGGC+TGG | - | 6095:41178-41197 | MS.gene24632:intron | 65.0% | |
| CCAGCCACTTGGGGCCCATT+TGG | + | 6095:41181-41200 | None:intergenic | 65.0% | |
| GCGGGAGTTTCGCCCACAGT+GGG | - | 6095:41675-41694 | MS.gene24632:intron | 65.0% | |
| GTGGGCGAAACTCCCGCTCA+GGG | + | 6095:41672-41691 | None:intergenic | 65.0% | |
| TGTGGGCGAAACTCCCGCTC+AGG | + | 6095:41673-41692 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 6095 | gene | 39151 | 42832 | 39151 | ID=MS.gene24632 |
| 6095 | mRNA | 39151 | 42832 | 39151 | ID=MS.gene24632.t1;Parent=MS.gene24632 |
| 6095 | exon | 42794 | 42832 | 42794 | ID=MS.gene24632.t1.exon1;Parent=MS.gene24632.t1 |
| 6095 | CDS | 42794 | 42832 | 42794 | ID=cds.MS.gene24632.t1;Parent=MS.gene24632.t1 |
| 6095 | exon | 39737 | 40919 | 39737 | ID=MS.gene24632.t1.exon2;Parent=MS.gene24632.t1 |
| 6095 | CDS | 39737 | 40919 | 39737 | ID=cds.MS.gene24632.t1;Parent=MS.gene24632.t1 |
| 6095 | exon | 39151 | 39350 | 39151 | ID=MS.gene24632.t1.exon3;Parent=MS.gene24632.t1 |
| 6095 | CDS | 39151 | 39350 | 39151 | ID=cds.MS.gene24632.t1;Parent=MS.gene24632.t1 |
| Gene Sequence |
| Protein sequence |
