Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25131.t1 | XP_003627289.1 | 94.8 | 212 | 11 | 0 | 1 | 212 | 1 | 212 | 4.90E-110 | 407.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25131.t1 | O04012 | 50.5 | 210 | 101 | 3 | 3 | 211 | 1 | 208 | 1.6e-48 | 194.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25131.t1 | G7L6W1 | 94.8 | 212 | 11 | 0 | 1 | 212 | 1 | 212 | 3.5e-110 | 407.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052142 | MS.gene25131 | 0.815679 | 8.17E-52 | -1.69E-46 |
| MS.gene052698 | MS.gene25131 | 0.81353 | 2.44E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25131.t1 | MTR_8g020770 | 94.811 | 212 | 11 | 0 | 1 | 212 | 1 | 212 | 4.17e-147 | 408 |
| MS.gene25131.t1 | MTR_8g020750 | 66.667 | 213 | 69 | 2 | 1 | 212 | 1 | 212 | 1.82e-96 | 280 |
| MS.gene25131.t1 | MTR_4g010340 | 62.559 | 211 | 72 | 5 | 3 | 212 | 1 | 205 | 6.13e-84 | 248 |
| MS.gene25131.t1 | MTR_8g020630 | 53.774 | 212 | 95 | 2 | 1 | 212 | 1 | 209 | 5.68e-79 | 235 |
| MS.gene25131.t1 | MTR_8g020760 | 57.746 | 213 | 87 | 3 | 1 | 212 | 1 | 211 | 8.06e-79 | 235 |
| MS.gene25131.t1 | MTR_8g020650 | 57.143 | 189 | 79 | 2 | 24 | 212 | 23 | 209 | 1.97e-74 | 224 |
| MS.gene25131.t1 | MTR_0284s0010 | 52.830 | 212 | 97 | 2 | 1 | 212 | 1 | 209 | 4.37e-74 | 223 |
| MS.gene25131.t1 | MTR_2g044040 | 52.358 | 212 | 98 | 3 | 1 | 212 | 1 | 209 | 6.07e-74 | 223 |
| MS.gene25131.t1 | MTR_2g036120 | 53.081 | 211 | 96 | 3 | 1 | 211 | 1 | 208 | 4.73e-72 | 218 |
| MS.gene25131.t1 | MTR_7g011340 | 57.143 | 189 | 79 | 1 | 24 | 212 | 23 | 209 | 5.83e-72 | 218 |
| MS.gene25131.t1 | MTR_3g019710 | 51.887 | 212 | 99 | 3 | 1 | 212 | 1 | 209 | 1.11e-70 | 214 |
| MS.gene25131.t1 | MTR_3g073170 | 52.093 | 215 | 95 | 5 | 1 | 212 | 1 | 210 | 8.26e-70 | 212 |
| MS.gene25131.t1 | MTR_2g019780 | 52.535 | 217 | 93 | 5 | 1 | 212 | 1 | 212 | 1.16e-69 | 212 |
| MS.gene25131.t1 | MTR_8g020670 | 50.239 | 209 | 102 | 2 | 4 | 212 | 3 | 209 | 2.96e-69 | 211 |
| MS.gene25131.t1 | MTR_2g045100 | 51.456 | 206 | 98 | 2 | 7 | 212 | 6 | 209 | 1.52e-68 | 209 |
| MS.gene25131.t1 | MTR_5g031460 | 49.528 | 212 | 104 | 3 | 1 | 212 | 1 | 209 | 2.28e-68 | 208 |
| MS.gene25131.t1 | MTR_3g019650 | 50.943 | 212 | 100 | 3 | 1 | 212 | 1 | 208 | 6.43e-68 | 207 |
| MS.gene25131.t1 | MTR_8g020763 | 55.191 | 183 | 81 | 1 | 30 | 212 | 9 | 190 | 6.64e-68 | 206 |
| MS.gene25131.t1 | MTR_3g019680 | 51.415 | 212 | 99 | 3 | 1 | 212 | 1 | 208 | 9.63e-68 | 207 |
| MS.gene25131.t1 | MTR_8g020610 | 50.242 | 207 | 99 | 3 | 7 | 212 | 4 | 207 | 1.26e-64 | 199 |
| MS.gene25131.t1 | MTR_2g041570 | 46.009 | 213 | 111 | 3 | 1 | 212 | 1 | 210 | 1.72e-63 | 196 |
| MS.gene25131.t1 | MTR_2g041580 | 45.540 | 213 | 112 | 3 | 1 | 212 | 1 | 210 | 1.70e-62 | 193 |
| MS.gene25131.t1 | MTR_2g041550 | 46.479 | 213 | 110 | 3 | 1 | 212 | 1 | 210 | 3.95e-61 | 190 |
| MS.gene25131.t1 | MTR_8g020590 | 48.341 | 211 | 105 | 4 | 3 | 212 | 1 | 208 | 4.05e-61 | 190 |
| MS.gene25131.t1 | MTR_3g019810 | 46.117 | 206 | 102 | 3 | 1 | 206 | 107 | 303 | 3.34e-51 | 168 |
| MS.gene25131.t1 | MTR_4g027415 | 55.738 | 122 | 52 | 1 | 24 | 145 | 23 | 142 | 1.05e-40 | 135 |
| MS.gene25131.t1 | MTR_6g005330 | 42.135 | 178 | 90 | 4 | 3 | 170 | 1 | 175 | 1.37e-30 | 112 |
| MS.gene25131.t1 | MTR_6g005380 | 41.899 | 179 | 90 | 4 | 3 | 170 | 1 | 176 | 1.60e-30 | 112 |
| MS.gene25131.t1 | MTR_6g005310 | 41.989 | 181 | 86 | 5 | 3 | 170 | 1 | 175 | 2.36e-30 | 111 |
| MS.gene25131.t1 | MTR_1g085500 | 41.317 | 167 | 92 | 4 | 7 | 169 | 9 | 173 | 2.53e-30 | 111 |
| MS.gene25131.t1 | MTR_6g005360 | 41.989 | 181 | 86 | 5 | 3 | 170 | 1 | 175 | 2.68e-30 | 111 |
| MS.gene25131.t1 | MTR_7g111240 | 42.767 | 159 | 86 | 4 | 24 | 178 | 25 | 182 | 2.80e-30 | 111 |
| MS.gene25131.t1 | MTR_2g030855 | 37.245 | 196 | 113 | 4 | 16 | 208 | 19 | 207 | 3.07e-30 | 111 |
| MS.gene25131.t1 | MTR_6g005340 | 41.989 | 181 | 86 | 5 | 3 | 170 | 1 | 175 | 6.57e-30 | 110 |
| MS.gene25131.t1 | MTR_3g019610 | 52.336 | 107 | 49 | 1 | 4 | 110 | 3 | 107 | 6.91e-30 | 107 |
| MS.gene25131.t1 | MTR_1g085140 | 37.113 | 194 | 118 | 3 | 15 | 205 | 20 | 212 | 9.51e-30 | 110 |
| MS.gene25131.t1 | MTR_7g111240 | 46.269 | 134 | 67 | 3 | 24 | 156 | 25 | 154 | 1.55e-29 | 109 |
| MS.gene25131.t1 | MTR_5g046410 | 40.223 | 179 | 95 | 4 | 1 | 170 | 1 | 176 | 2.61e-29 | 108 |
| MS.gene25131.t1 | MTR_5g046430 | 40.223 | 179 | 95 | 4 | 1 | 170 | 1 | 176 | 2.61e-29 | 108 |
| MS.gene25131.t1 | MTR_4g017030 | 40.223 | 179 | 95 | 4 | 1 | 170 | 1 | 176 | 2.61e-29 | 108 |
| MS.gene25131.t1 | MTR_2g072560 | 50.435 | 115 | 55 | 2 | 4 | 118 | 3 | 115 | 2.77e-29 | 106 |
| MS.gene25131.t1 | MTR_2g031270 | 44.000 | 150 | 77 | 3 | 24 | 170 | 28 | 173 | 2.87e-29 | 108 |
| MS.gene25131.t1 | MTR_1g079490 | 39.594 | 197 | 108 | 5 | 1 | 188 | 1 | 195 | 2.88e-29 | 108 |
| MS.gene25131.t1 | MTR_4g017050 | 40.223 | 179 | 95 | 4 | 1 | 170 | 1 | 176 | 2.99e-29 | 108 |
| MS.gene25131.t1 | MTR_4g017040 | 39.665 | 179 | 96 | 4 | 1 | 170 | 1 | 176 | 3.78e-29 | 108 |
| MS.gene25131.t1 | MTR_2g019250 | 40.223 | 179 | 95 | 4 | 1 | 170 | 1 | 176 | 1.16e-28 | 107 |
| MS.gene25131.t1 | MTR_1g112200 | 31.579 | 209 | 136 | 3 | 4 | 211 | 8 | 210 | 1.00e-27 | 104 |
| MS.gene25131.t1 | MTR_1g023770 | 39.521 | 167 | 91 | 3 | 7 | 170 | 10 | 169 | 1.15e-27 | 104 |
| MS.gene25131.t1 | MTR_8g007300 | 44.030 | 134 | 72 | 2 | 38 | 170 | 47 | 178 | 2.81e-27 | 103 |
| MS.gene25131.t1 | MTR_1g060120 | 33.816 | 207 | 125 | 5 | 11 | 207 | 18 | 222 | 1.09e-26 | 102 |
| MS.gene25131.t1 | MTR_5g036570 | 31.937 | 191 | 125 | 4 | 24 | 210 | 32 | 221 | 3.44e-26 | 100 |
| MS.gene25131.t1 | MTR_6g005350 | 36.946 | 203 | 115 | 4 | 3 | 195 | 1 | 200 | 2.15e-25 | 99.0 |
| MS.gene25131.t1 | MTR_3g096330 | 35.754 | 179 | 104 | 3 | 1 | 170 | 553 | 729 | 3.43e-25 | 103 |
| MS.gene25131.t1 | MTR_2g030895 | 38.596 | 171 | 97 | 4 | 42 | 208 | 7 | 173 | 3.65e-25 | 97.1 |
| MS.gene25131.t1 | MTR_2g030865 | 43.609 | 133 | 70 | 3 | 42 | 170 | 7 | 138 | 2.26e-23 | 92.4 |
| MS.gene25131.t1 | MTR_2g031300 | 45.794 | 107 | 54 | 2 | 42 | 145 | 7 | 112 | 4.62e-20 | 83.2 |
| MS.gene25131.t1 | MTR_2g096110 | 34.437 | 151 | 79 | 3 | 47 | 197 | 8 | 138 | 1.82e-17 | 75.9 |
| MS.gene25131.t1 | MTR_2g086640 | 31.818 | 176 | 102 | 7 | 2 | 173 | 7 | 168 | 9.11e-17 | 75.9 |
| MS.gene25131.t1 | MTR_4g052770 | 32.919 | 161 | 93 | 5 | 34 | 180 | 28 | 187 | 2.10e-16 | 74.7 |
| MS.gene25131.t1 | MTR_4g052780 | 32.919 | 161 | 93 | 5 | 34 | 180 | 28 | 187 | 4.59e-16 | 73.9 |
| MS.gene25131.t1 | MTR_2g086620 | 35.172 | 145 | 86 | 5 | 34 | 173 | 28 | 169 | 1.19e-15 | 72.8 |
| MS.gene25131.t1 | MTR_2g086630 | 34.483 | 145 | 87 | 5 | 34 | 173 | 28 | 169 | 2.85e-15 | 71.6 |
| MS.gene25131.t1 | MTR_7g029500 | 52.830 | 53 | 25 | 0 | 153 | 205 | 38 | 90 | 2.66e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25131.t1 | AT5G20630 | 49.057 | 212 | 105 | 3 | 1 | 211 | 1 | 210 | 1.11e-61 | 191 |
| MS.gene25131.t1 | AT1G72610 | 49.474 | 190 | 94 | 2 | 24 | 212 | 20 | 208 | 2.12e-56 | 178 |
| MS.gene25131.t1 | AT5G39160 | 39.091 | 220 | 119 | 6 | 1 | 209 | 1 | 216 | 7.54e-40 | 136 |
| MS.gene25131.t1 | AT5G39130 | 38.462 | 221 | 123 | 6 | 1 | 209 | 1 | 220 | 1.51e-38 | 133 |
| MS.gene25131.t1 | AT5G39190 | 38.462 | 221 | 123 | 6 | 1 | 209 | 1 | 220 | 1.54e-38 | 133 |
| MS.gene25131.t1 | AT5G39160 | 38.462 | 221 | 123 | 6 | 1 | 209 | 1 | 220 | 2.94e-38 | 132 |
| MS.gene25131.t1 | AT3G04200 | 38.356 | 219 | 124 | 5 | 1 | 209 | 6 | 223 | 1.17e-37 | 130 |
| MS.gene25131.t1 | AT5G38960 | 41.262 | 206 | 101 | 5 | 20 | 209 | 22 | 223 | 1.88e-37 | 130 |
| MS.gene25131.t1 | AT5G26700 | 42.328 | 189 | 102 | 5 | 24 | 209 | 26 | 210 | 4.76e-36 | 126 |
| MS.gene25131.t1 | AT3G05930 | 42.021 | 188 | 106 | 2 | 24 | 208 | 28 | 215 | 7.54e-36 | 125 |
| MS.gene25131.t1 | AT1G02335 | 38.967 | 213 | 118 | 6 | 6 | 209 | 7 | 216 | 5.05e-35 | 124 |
| MS.gene25131.t1 | AT5G39110 | 45.395 | 152 | 76 | 3 | 25 | 170 | 30 | 180 | 1.29e-34 | 122 |
| MS.gene25131.t1 | AT3G62020 | 42.775 | 173 | 88 | 4 | 9 | 175 | 8 | 175 | 1.14e-33 | 120 |
| MS.gene25131.t1 | AT3G05950 | 46.053 | 152 | 76 | 3 | 24 | 170 | 31 | 181 | 1.99e-33 | 120 |
| MS.gene25131.t1 | AT3G04150 | 44.079 | 152 | 79 | 3 | 24 | 170 | 31 | 181 | 1.41e-32 | 117 |
| MS.gene25131.t1 | AT3G04150 | 46.617 | 133 | 66 | 2 | 42 | 170 | 63 | 194 | 1.42e-32 | 118 |
| MS.gene25131.t1 | AT5G39120 | 40.437 | 183 | 90 | 6 | 1 | 170 | 3 | 179 | 1.89e-32 | 117 |
| MS.gene25131.t1 | AT5G39180 | 37.755 | 196 | 107 | 4 | 1 | 186 | 5 | 195 | 2.52e-32 | 117 |
| MS.gene25131.t1 | AT5G39150 | 39.444 | 180 | 94 | 4 | 1 | 170 | 5 | 179 | 7.68e-32 | 115 |
| MS.gene25131.t1 | AT3G04190 | 44.737 | 152 | 78 | 3 | 24 | 170 | 31 | 181 | 2.00e-31 | 114 |
| MS.gene25131.t1 | AT5G38940 | 39.583 | 192 | 108 | 4 | 24 | 208 | 31 | 221 | 3.38e-31 | 114 |
| MS.gene25131.t1 | AT5G38940 | 39.583 | 192 | 108 | 4 | 24 | 208 | 55 | 245 | 5.55e-31 | 114 |
| MS.gene25131.t1 | AT1G18980 | 36.493 | 211 | 128 | 4 | 2 | 209 | 12 | 219 | 6.50e-31 | 113 |
| MS.gene25131.t1 | AT5G39190 | 35.000 | 220 | 110 | 6 | 1 | 209 | 1 | 198 | 6.64e-31 | 112 |
| MS.gene25131.t1 | AT4G14630 | 45.860 | 157 | 70 | 4 | 24 | 170 | 31 | 182 | 8.91e-31 | 112 |
| MS.gene25131.t1 | AT5G39160 | 35.000 | 220 | 110 | 6 | 1 | 209 | 1 | 198 | 9.16e-31 | 112 |
| MS.gene25131.t1 | AT5G61750 | 37.989 | 179 | 95 | 4 | 1 | 170 | 1 | 172 | 5.86e-30 | 110 |
| MS.gene25131.t1 | AT3G62020 | 45.652 | 138 | 69 | 3 | 39 | 175 | 14 | 146 | 8.44e-30 | 109 |
| MS.gene25131.t1 | AT5G38910 | 37.788 | 217 | 117 | 6 | 4 | 208 | 9 | 219 | 2.80e-29 | 108 |
| MS.gene25131.t1 | AT5G38930 | 38.542 | 192 | 110 | 4 | 24 | 208 | 31 | 221 | 4.11e-29 | 108 |
| MS.gene25131.t1 | AT1G09560 | 39.429 | 175 | 101 | 3 | 16 | 186 | 18 | 191 | 1.19e-28 | 107 |
| MS.gene25131.t1 | AT3G04180 | 36.649 | 191 | 113 | 4 | 25 | 208 | 32 | 221 | 4.05e-28 | 106 |
| MS.gene25131.t1 | AT1G74820 | 44.776 | 134 | 70 | 3 | 24 | 156 | 41 | 171 | 5.05e-28 | 105 |
| MS.gene25131.t1 | AT1G18970 | 35.681 | 213 | 128 | 5 | 3 | 209 | 10 | 219 | 6.17e-28 | 105 |
| MS.gene25131.t1 | AT3G04170 | 42.581 | 155 | 74 | 4 | 24 | 170 | 31 | 178 | 5.01e-27 | 103 |
| MS.gene25131.t1 | AT1G10460 | 36.000 | 150 | 94 | 2 | 39 | 186 | 42 | 191 | 5.78e-26 | 100 |
| MS.gene25131.t1 | AT3G10080 | 35.673 | 171 | 103 | 3 | 41 | 208 | 53 | 219 | 8.83e-23 | 92.4 |
| MS.gene25131.t1 | AT3G10080 | 35.673 | 171 | 103 | 3 | 41 | 208 | 124 | 290 | 4.90e-22 | 91.7 |
| MS.gene25131.t1 | AT5G38910 | 31.308 | 214 | 98 | 6 | 4 | 208 | 9 | 182 | 1.68e-14 | 69.3 |
Find 31 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAGCTTAAGGTTAATTT+TGG | 0.189584 | 8.4:-72844027 | MS.gene25131:CDS |
| CACTTAATCCTGGTGATGTT+TGG | 0.277337 | 8.4:-72844227 | MS.gene25131:CDS |
| ACTTAATCCTGGTGATGTTT+GGG | 0.337157 | 8.4:-72844226 | MS.gene25131:CDS |
| GAGTTTGTCGACGTGTTTGC+AGG | 0.363951 | 8.4:+72844450 | None:intergenic |
| TCCACAAATTATGAAGCTTA+AGG | 0.372687 | 8.4:-72844037 | MS.gene25131:CDS |
| ATCGTTTCCAGACACCCCTT+CGG | 0.376629 | 8.4:-72844538 | MS.gene25131:CDS |
| TCGTTTCCAGACACCCCTTC+GGG | 0.386894 | 8.4:-72844537 | MS.gene25131:CDS |
| ACCTTAAGCTTCATAATTTG+TGG | 0.389226 | 8.4:+72844036 | None:intergenic |
| GGATAGCCCGAAGGGGTGTC+TGG | 0.391633 | 8.4:+72844531 | None:intergenic |
| ATCAGAATCAATAGCATTTG+AGG | 0.419441 | 8.4:+72844581 | None:intergenic |
| AGAATAGATCTTGGCTTCAA+TGG | 0.435930 | 8.4:-72844354 | MS.gene25131:CDS |
| TTTATACTTAACACTGGTCC+TGG | 0.439650 | 8.4:-72844180 | MS.gene25131:CDS |
| GAATAAGCAACAGCATTTCC+AGG | 0.471369 | 8.4:+72844162 | None:intergenic |
| TTTATGAAAACACTTAATCC+TGG | 0.483307 | 8.4:-72844237 | MS.gene25131:CDS |
| TCTGTAGCAAGAATAGATCT+TGG | 0.497563 | 8.4:-72844363 | MS.gene25131:CDS |
| ATTCAAGGTCAAATGACTGC+TGG | 0.516733 | 8.4:-72844282 | MS.gene25131:CDS |
| ATAAAATGCAAAAGTCCTGT+TGG | 0.527650 | 8.4:+72844198 | None:intergenic |
| GATAAGATACCAGGTCTCAA+TGG | 0.527717 | 8.4:-72844396 | MS.gene25131:CDS |
| ATTATAAATTCGCCTATGCC+AGG | 0.531971 | 8.4:+72844309 | None:intergenic |
| ATACCAGGTCTCAATGGACT+TGG | 0.540360 | 8.4:-72844390 | MS.gene25131:CDS |
| GAATTTATAATCGTCATTCA+AGG | 0.543864 | 8.4:-72844297 | MS.gene25131:CDS |
| GTACCAATGCACACTCATCC+TGG | 0.556822 | 8.4:-72844327 | MS.gene25131:CDS |
| TTAAGCTTCATAATTTGTGG+AGG | 0.583672 | 8.4:+72844039 | None:intergenic |
| ACTTGCATGGATAGCCCGAA+GGG | 0.586847 | 8.4:+72844523 | None:intergenic |
| GACTTGCATGGATAGCCCGA+AGG | 0.590826 | 8.4:+72844522 | None:intergenic |
| GTAAAAGTCGATAAGATACC+AGG | 0.594356 | 8.4:-72844405 | MS.gene25131:CDS |
| ATGCACACTCATCCTGGCAT+AGG | 0.628928 | 8.4:-72844321 | MS.gene25131:CDS |
| ATGCCAGGATGAGTGTGCAT+TGG | 0.630970 | 8.4:+72844324 | None:intergenic |
| TTCGGGCTATCCATGCAAGT+CGG | 0.659661 | 8.4:-72844520 | MS.gene25131:CDS |
| ATACCAAGTCCATTGAGACC+TGG | 0.667082 | 8.4:+72844387 | None:intergenic |
| CTTGCATGGATAGCCCGAAG+GGG | 0.715273 | 8.4:+72844524 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAACTGATTTTTTGTTATT+TGG | - | chr8.4:72844536-72844555 | MS.gene25131:CDS | 15.0% |
| !!! | GTTTTCATAAAAACTTTTGT+AGG | + | chr8.4:72844398-72844417 | None:intergenic | 20.0% |
| ! | GAATTTATAATCGTCATTCA+AGG | - | chr8.4:72844347-72844366 | MS.gene25131:CDS | 25.0% |
| ! | TTTATGAAAACACTTAATCC+TGG | - | chr8.4:72844407-72844426 | MS.gene25131:CDS | 25.0% |
| !! | ATGAAGCTTAAGGTTAATTT+TGG | - | chr8.4:72844617-72844636 | MS.gene25131:CDS | 25.0% |
| !! | TTGCATTTTATACTTAACAC+TGG | - | chr8.4:72844458-72844477 | MS.gene25131:CDS | 25.0% |
| ACCTTAAGCTTCATAATTTG+TGG | + | chr8.4:72844611-72844630 | None:intergenic | 30.0% | |
| ATAAAATGCAAAAGTCCTGT+TGG | + | chr8.4:72844449-72844468 | None:intergenic | 30.0% | |
| ATCAGAATCAATAGCATTTG+AGG | + | chr8.4:72844066-72844085 | None:intergenic | 30.0% | |
| TCCACAAATTATGAAGCTTA+AGG | - | chr8.4:72844607-72844626 | MS.gene25131:CDS | 30.0% | |
| ! | AAGCTTAAGGTTAATTTTGG+TGG | - | chr8.4:72844620-72844639 | MS.gene25131:CDS | 30.0% |
| ! | TTAAGCTTCATAATTTGTGG+AGG | + | chr8.4:72844608-72844627 | None:intergenic | 30.0% |
| !!! | TATCTTATCGACTTTTACAG+TGG | + | chr8.4:72844237-72844256 | None:intergenic | 30.0% |
| AGAATAGATCTTGGCTTCAA+TGG | - | chr8.4:72844290-72844309 | MS.gene25131:CDS | 35.0% | |
| ATTATAAATTCGCCTATGCC+AGG | + | chr8.4:72844338-72844357 | None:intergenic | 35.0% | |
| GTAAAAGTCGATAAGATACC+AGG | - | chr8.4:72844239-72844258 | MS.gene25131:CDS | 35.0% | |
| TCTGTAGCAAGAATAGATCT+TGG | - | chr8.4:72844281-72844300 | MS.gene25131:CDS | 35.0% | |
| TTTATACTTAACACTGGTCC+TGG | - | chr8.4:72844464-72844483 | MS.gene25131:CDS | 35.0% | |
| ! | AAGAGTAGTCTTTTGAACTG+TGG | + | chr8.4:72844579-72844598 | None:intergenic | 35.0% |
| ! | ACTTAATCCTGGTGATGTTT+GGG | - | chr8.4:72844418-72844437 | MS.gene25131:CDS | 35.0% |
| ! | GCTAATGATTTTGTGTTCTC+TGG | - | chr8.4:72844161-72844180 | MS.gene25131:CDS | 35.0% |
| ATTCAAGGTCAAATGACTGC+TGG | - | chr8.4:72844362-72844381 | MS.gene25131:CDS | 40.0% | |
| GAATAAGCAACAGCATTTCC+AGG | + | chr8.4:72844485-72844504 | None:intergenic | 40.0% | |
| GATAAGATACCAGGTCTCAA+TGG | - | chr8.4:72844248-72844267 | MS.gene25131:CDS | 40.0% | |
| ! | CACTTAATCCTGGTGATGTT+TGG | - | chr8.4:72844417-72844436 | MS.gene25131:CDS | 40.0% |
| ! | GTCTTTTGAACTGTGGAAGT+TGG | + | chr8.4:72844572-72844591 | None:intergenic | 40.0% |
| !! | AAGGTTAATTTTGGTGGCAG+TGG | - | chr8.4:72844626-72844645 | MS.gene25131:CDS | 40.0% |
| !! | ACATTGTTTTCCGACTTGCA+TGG | + | chr8.4:72844137-72844156 | None:intergenic | 40.0% |
| !! | GATGTTTGGGTTTTTCCAAC+AGG | - | chr8.4:72844431-72844450 | MS.gene25131:CDS | 40.0% |
| ATACCAAGTCCATTGAGACC+TGG | + | chr8.4:72844260-72844279 | None:intergenic | 45.0% | |
| GGAAAAACCCAAACATCACC+AGG | + | chr8.4:72844428-72844447 | None:intergenic | 45.0% | |
| ! | ATACCAGGTCTCAATGGACT+TGG | - | chr8.4:72844254-72844273 | MS.gene25131:CDS | 45.0% |
| ACTTGCATGGATAGCCCGAA+GGG | + | chr8.4:72844124-72844143 | None:intergenic | 50.0% | |
| ATCGTTTCCAGACACCCCTT+CGG | - | chr8.4:72844106-72844125 | MS.gene25131:CDS | 50.0% | |
| ATGCACACTCATCCTGGCAT+AGG | - | chr8.4:72844323-72844342 | MS.gene25131:CDS | 50.0% | |
| ATGCCAGGATGAGTGTGCAT+TGG | + | chr8.4:72844323-72844342 | None:intergenic | 50.0% | |
| GAGTTTGTCGACGTGTTTGC+AGG | + | chr8.4:72844197-72844216 | None:intergenic | 50.0% | |
| GTACCAATGCACACTCATCC+TGG | - | chr8.4:72844317-72844336 | MS.gene25131:CDS | 50.0% | |
| TTCGGGCTATCCATGCAAGT+CGG | - | chr8.4:72844124-72844143 | MS.gene25131:CDS | 50.0% | |
| CTTGCATGGATAGCCCGAAG+GGG | + | chr8.4:72844123-72844142 | None:intergenic | 55.0% | |
| GACTTGCATGGATAGCCCGA+AGG | + | chr8.4:72844125-72844144 | None:intergenic | 55.0% | |
| TCGTTTCCAGACACCCCTTC+GGG | - | chr8.4:72844107-72844126 | MS.gene25131:CDS | 55.0% | |
| !! | GGATAGCCCGAAGGGGTGTC+TGG | + | chr8.4:72844116-72844135 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 72844014 | 72844652 | 72844014 | ID=MS.gene25131 |
| chr8.4 | mRNA | 72844014 | 72844652 | 72844014 | ID=MS.gene25131.t1;Parent=MS.gene25131 |
| chr8.4 | exon | 72844014 | 72844652 | 72844014 | ID=MS.gene25131.t1.exon1;Parent=MS.gene25131.t1 |
| chr8.4 | CDS | 72844014 | 72844652 | 72844014 | ID=cds.MS.gene25131.t1;Parent=MS.gene25131.t1 |
| Gene Sequence |
| Protein sequence |
