Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25132.t1 | XP_003627288.2 | 83.6 | 213 | 33 | 1 | 1 | 213 | 1 | 211 | 7.30E-90 | 340.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25132.t1 | O04012 | 51.9 | 212 | 96 | 3 | 3 | 212 | 1 | 208 | 8.3e-50 | 198.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25132.t1 | G7L6W0 | 83.6 | 213 | 33 | 1 | 1 | 213 | 1 | 211 | 5.3e-90 | 340.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055359 | MS.gene25132 | 0.816775 | 4.65E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25132.t1 | MTR_8g020760 | 83.568 | 213 | 33 | 1 | 1 | 213 | 1 | 211 | 1.21e-121 | 343 |
| MS.gene25132.t1 | MTR_4g010340 | 75.355 | 211 | 46 | 2 | 3 | 213 | 1 | 205 | 6.54e-109 | 311 |
| MS.gene25132.t1 | MTR_8g020763 | 80.220 | 182 | 35 | 1 | 33 | 213 | 9 | 190 | 3.71e-101 | 291 |
| MS.gene25132.t1 | MTR_8g020630 | 60.563 | 213 | 80 | 2 | 1 | 213 | 1 | 209 | 4.53e-89 | 261 |
| MS.gene25132.t1 | MTR_2g019780 | 63.426 | 216 | 72 | 4 | 1 | 213 | 1 | 212 | 4.41e-86 | 253 |
| MS.gene25132.t1 | MTR_8g020650 | 58.216 | 213 | 85 | 1 | 1 | 213 | 1 | 209 | 8.68e-86 | 253 |
| MS.gene25132.t1 | MTR_2g044040 | 59.155 | 213 | 83 | 2 | 1 | 213 | 1 | 209 | 2.27e-85 | 251 |
| MS.gene25132.t1 | MTR_2g045100 | 61.033 | 213 | 79 | 2 | 1 | 213 | 1 | 209 | 2.00e-84 | 249 |
| MS.gene25132.t1 | MTR_3g073170 | 63.551 | 214 | 73 | 3 | 1 | 213 | 1 | 210 | 2.19e-84 | 249 |
| MS.gene25132.t1 | MTR_8g020770 | 59.070 | 215 | 83 | 4 | 1 | 213 | 1 | 212 | 1.19e-83 | 247 |
| MS.gene25132.t1 | MTR_2g036120 | 59.434 | 212 | 82 | 2 | 1 | 212 | 1 | 208 | 1.14e-82 | 244 |
| MS.gene25132.t1 | MTR_8g020670 | 57.971 | 207 | 84 | 1 | 7 | 213 | 6 | 209 | 1.88e-81 | 241 |
| MS.gene25132.t1 | MTR_0284s0010 | 58.216 | 213 | 85 | 2 | 1 | 213 | 1 | 209 | 9.37e-81 | 240 |
| MS.gene25132.t1 | MTR_8g020750 | 59.070 | 215 | 83 | 4 | 1 | 213 | 1 | 212 | 5.77e-79 | 235 |
| MS.gene25132.t1 | MTR_7g011340 | 61.702 | 188 | 72 | 0 | 26 | 213 | 22 | 209 | 6.87e-79 | 235 |
| MS.gene25132.t1 | MTR_3g019710 | 57.746 | 213 | 86 | 2 | 1 | 213 | 1 | 209 | 3.10e-78 | 233 |
| MS.gene25132.t1 | MTR_3g019680 | 55.238 | 210 | 90 | 1 | 4 | 213 | 3 | 208 | 4.74e-74 | 223 |
| MS.gene25132.t1 | MTR_3g019650 | 55.072 | 207 | 89 | 1 | 7 | 213 | 6 | 208 | 8.01e-74 | 222 |
| MS.gene25132.t1 | MTR_5g031460 | 53.991 | 213 | 94 | 2 | 1 | 213 | 1 | 209 | 2.26e-73 | 221 |
| MS.gene25132.t1 | MTR_8g020590 | 48.804 | 209 | 101 | 3 | 7 | 213 | 4 | 208 | 1.88e-65 | 201 |
| MS.gene25132.t1 | MTR_2g041570 | 47.907 | 215 | 105 | 3 | 1 | 213 | 1 | 210 | 9.79e-64 | 197 |
| MS.gene25132.t1 | MTR_2g041580 | 47.442 | 215 | 106 | 3 | 1 | 213 | 1 | 210 | 6.11e-63 | 194 |
| MS.gene25132.t1 | MTR_2g041550 | 47.442 | 215 | 106 | 3 | 1 | 213 | 1 | 210 | 1.71e-61 | 191 |
| MS.gene25132.t1 | MTR_8g020610 | 49.282 | 209 | 102 | 3 | 7 | 213 | 1 | 207 | 4.44e-61 | 190 |
| MS.gene25132.t1 | MTR_3g019810 | 48.544 | 206 | 96 | 3 | 1 | 206 | 107 | 302 | 1.22e-56 | 182 |
| MS.gene25132.t1 | MTR_4g027415 | 61.983 | 121 | 46 | 0 | 26 | 146 | 22 | 142 | 2.05e-45 | 147 |
| MS.gene25132.t1 | MTR_2g072560 | 56.198 | 121 | 45 | 2 | 1 | 119 | 1 | 115 | 4.04e-36 | 124 |
| MS.gene25132.t1 | MTR_1g079490 | 36.406 | 217 | 130 | 3 | 1 | 209 | 1 | 217 | 5.91e-35 | 123 |
| MS.gene25132.t1 | MTR_3g019610 | 54.955 | 111 | 42 | 2 | 1 | 109 | 1 | 105 | 5.93e-32 | 112 |
| MS.gene25132.t1 | MTR_2g031270 | 36.598 | 194 | 114 | 4 | 22 | 209 | 23 | 213 | 1.52e-31 | 114 |
| MS.gene25132.t1 | MTR_6g005330 | 36.111 | 216 | 130 | 4 | 1 | 209 | 1 | 215 | 5.62e-31 | 113 |
| MS.gene25132.t1 | MTR_6g005360 | 35.648 | 216 | 131 | 4 | 1 | 209 | 1 | 215 | 2.35e-30 | 111 |
| MS.gene25132.t1 | MTR_6g005310 | 36.792 | 212 | 124 | 5 | 7 | 209 | 5 | 215 | 1.00e-29 | 110 |
| MS.gene25132.t1 | MTR_4g017050 | 35.945 | 217 | 128 | 5 | 1 | 208 | 1 | 215 | 2.65e-29 | 108 |
| MS.gene25132.t1 | MTR_1g112200 | 35.938 | 192 | 110 | 7 | 26 | 212 | 27 | 210 | 2.80e-29 | 108 |
| MS.gene25132.t1 | MTR_5g046410 | 35.945 | 217 | 128 | 5 | 1 | 208 | 1 | 215 | 2.89e-29 | 108 |
| MS.gene25132.t1 | MTR_5g046430 | 35.945 | 217 | 128 | 5 | 1 | 208 | 1 | 215 | 2.89e-29 | 108 |
| MS.gene25132.t1 | MTR_4g017030 | 35.945 | 217 | 128 | 5 | 1 | 208 | 1 | 215 | 2.89e-29 | 108 |
| MS.gene25132.t1 | MTR_6g005340 | 36.321 | 212 | 125 | 5 | 7 | 209 | 5 | 215 | 5.13e-29 | 108 |
| MS.gene25132.t1 | MTR_1g085500 | 35.514 | 214 | 122 | 6 | 7 | 210 | 8 | 215 | 7.91e-29 | 107 |
| MS.gene25132.t1 | MTR_1g085140 | 37.696 | 191 | 111 | 4 | 26 | 210 | 28 | 216 | 1.41e-28 | 107 |
| MS.gene25132.t1 | MTR_1g023770 | 35.417 | 192 | 112 | 4 | 24 | 209 | 24 | 209 | 2.01e-28 | 106 |
| MS.gene25132.t1 | MTR_2g030855 | 37.634 | 186 | 106 | 4 | 23 | 204 | 23 | 202 | 2.05e-28 | 106 |
| MS.gene25132.t1 | MTR_7g111240 | 44.595 | 148 | 79 | 3 | 25 | 169 | 23 | 170 | 2.39e-28 | 106 |
| MS.gene25132.t1 | MTR_1g060120 | 31.163 | 215 | 139 | 3 | 4 | 209 | 7 | 221 | 3.04e-28 | 106 |
| MS.gene25132.t1 | MTR_7g111240 | 45.270 | 148 | 75 | 4 | 25 | 169 | 23 | 167 | 4.95e-28 | 105 |
| MS.gene25132.t1 | MTR_4g017040 | 35.023 | 217 | 130 | 5 | 1 | 208 | 1 | 215 | 5.57e-28 | 105 |
| MS.gene25132.t1 | MTR_8g007300 | 38.150 | 173 | 95 | 6 | 8 | 172 | 11 | 179 | 7.18e-28 | 105 |
| MS.gene25132.t1 | MTR_2g019250 | 35.023 | 217 | 130 | 5 | 1 | 208 | 1 | 215 | 1.78e-27 | 104 |
| MS.gene25132.t1 | MTR_6g005380 | 40.476 | 168 | 93 | 3 | 11 | 172 | 11 | 177 | 2.24e-27 | 103 |
| MS.gene25132.t1 | MTR_2g030895 | 35.465 | 172 | 104 | 4 | 45 | 209 | 7 | 178 | 4.54e-25 | 97.1 |
| MS.gene25132.t1 | MTR_6g005350 | 33.019 | 212 | 133 | 5 | 6 | 209 | 4 | 214 | 1.00e-23 | 94.4 |
| MS.gene25132.t1 | MTR_2g030865 | 35.465 | 172 | 104 | 4 | 45 | 209 | 7 | 178 | 1.82e-23 | 92.8 |
| MS.gene25132.t1 | MTR_5g036570 | 31.414 | 191 | 126 | 4 | 26 | 211 | 31 | 221 | 2.40e-23 | 93.6 |
| MS.gene25132.t1 | MTR_3g096330 | 33.146 | 178 | 102 | 3 | 41 | 203 | 598 | 773 | 2.70e-23 | 97.4 |
| MS.gene25132.t1 | MTR_2g031300 | 44.340 | 106 | 55 | 2 | 45 | 146 | 7 | 112 | 3.52e-20 | 83.6 |
| MS.gene25132.t1 | MTR_2g086620 | 31.373 | 204 | 129 | 5 | 15 | 209 | 3 | 204 | 1.93e-18 | 80.1 |
| MS.gene25132.t1 | MTR_2g086630 | 31.373 | 204 | 129 | 5 | 15 | 209 | 3 | 204 | 2.73e-18 | 79.7 |
| MS.gene25132.t1 | MTR_2g086640 | 29.412 | 204 | 135 | 5 | 14 | 209 | 1 | 203 | 3.06e-18 | 79.7 |
| MS.gene25132.t1 | MTR_2g096110 | 36.913 | 149 | 72 | 5 | 52 | 198 | 10 | 138 | 3.98e-18 | 77.8 |
| MS.gene25132.t1 | MTR_7g029500 | 71.698 | 53 | 15 | 0 | 154 | 206 | 38 | 90 | 5.84e-17 | 73.2 |
| MS.gene25132.t1 | MTR_4g052770 | 34.146 | 164 | 103 | 3 | 51 | 209 | 42 | 205 | 2.55e-16 | 74.7 |
| MS.gene25132.t1 | MTR_4g052780 | 34.146 | 164 | 103 | 3 | 51 | 209 | 42 | 205 | 6.53e-16 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25132.t1 | AT1G72610 | 48.958 | 192 | 96 | 2 | 24 | 213 | 17 | 208 | 1.06e-60 | 189 |
| MS.gene25132.t1 | AT5G20630 | 45.327 | 214 | 111 | 3 | 1 | 212 | 1 | 210 | 2.36e-56 | 178 |
| MS.gene25132.t1 | AT5G38960 | 42.000 | 200 | 99 | 5 | 24 | 210 | 28 | 223 | 1.82e-37 | 130 |
| MS.gene25132.t1 | AT3G05950 | 39.614 | 207 | 117 | 4 | 11 | 209 | 15 | 221 | 8.81e-34 | 120 |
| MS.gene25132.t1 | AT3G04200 | 36.574 | 216 | 127 | 5 | 3 | 210 | 10 | 223 | 2.17e-32 | 117 |
| MS.gene25132.t1 | AT5G39190 | 36.232 | 207 | 124 | 4 | 12 | 210 | 14 | 220 | 2.35e-32 | 117 |
| MS.gene25132.t1 | AT5G39160 | 35.437 | 206 | 123 | 4 | 12 | 210 | 14 | 216 | 2.93e-32 | 116 |
| MS.gene25132.t1 | AT5G39160 | 35.749 | 207 | 125 | 4 | 12 | 210 | 14 | 220 | 5.70e-32 | 116 |
| MS.gene25132.t1 | AT5G39130 | 35.749 | 207 | 125 | 4 | 12 | 210 | 14 | 220 | 1.61e-31 | 115 |
| MS.gene25132.t1 | AT5G38940 | 38.144 | 194 | 112 | 4 | 24 | 209 | 28 | 221 | 7.36e-31 | 113 |
| MS.gene25132.t1 | AT5G38940 | 38.144 | 194 | 112 | 4 | 24 | 209 | 52 | 245 | 1.06e-30 | 113 |
| MS.gene25132.t1 | AT5G26700 | 36.181 | 199 | 118 | 4 | 17 | 210 | 16 | 210 | 1.46e-30 | 112 |
| MS.gene25132.t1 | AT3G05930 | 35.096 | 208 | 130 | 3 | 7 | 209 | 8 | 215 | 1.86e-30 | 112 |
| MS.gene25132.t1 | AT4G14630 | 37.209 | 215 | 118 | 5 | 8 | 209 | 12 | 222 | 3.60e-30 | 111 |
| MS.gene25132.t1 | AT5G39110 | 35.211 | 213 | 129 | 4 | 6 | 209 | 8 | 220 | 1.05e-29 | 110 |
| MS.gene25132.t1 | AT1G09560 | 41.615 | 161 | 92 | 2 | 26 | 184 | 28 | 188 | 1.46e-29 | 109 |
| MS.gene25132.t1 | AT1G02335 | 35.263 | 190 | 119 | 3 | 25 | 210 | 27 | 216 | 1.81e-29 | 109 |
| MS.gene25132.t1 | AT5G38910 | 35.349 | 215 | 123 | 5 | 7 | 209 | 9 | 219 | 2.88e-29 | 108 |
| MS.gene25132.t1 | AT5G61750 | 42.647 | 136 | 72 | 3 | 41 | 172 | 40 | 173 | 3.48e-29 | 108 |
| MS.gene25132.t1 | AT3G04150 | 32.536 | 209 | 133 | 4 | 13 | 213 | 17 | 225 | 4.72e-29 | 108 |
| MS.gene25132.t1 | AT5G38930 | 37.113 | 194 | 114 | 4 | 24 | 209 | 28 | 221 | 5.24e-29 | 108 |
| MS.gene25132.t1 | AT3G04190 | 35.204 | 196 | 119 | 4 | 15 | 202 | 19 | 214 | 1.14e-28 | 107 |
| MS.gene25132.t1 | AT1G18980 | 37.037 | 189 | 113 | 4 | 26 | 210 | 33 | 219 | 2.05e-28 | 106 |
| MS.gene25132.t1 | AT3G62020 | 34.742 | 213 | 124 | 6 | 9 | 210 | 8 | 216 | 2.54e-28 | 106 |
| MS.gene25132.t1 | AT3G04150 | 34.659 | 176 | 108 | 3 | 45 | 213 | 63 | 238 | 2.93e-28 | 107 |
| MS.gene25132.t1 | AT3G04180 | 34.975 | 203 | 124 | 4 | 15 | 209 | 19 | 221 | 4.44e-28 | 105 |
| MS.gene25132.t1 | AT5G39180 | 34.722 | 216 | 130 | 5 | 4 | 209 | 5 | 219 | 6.36e-28 | 105 |
| MS.gene25132.t1 | AT3G04170 | 35.849 | 212 | 115 | 8 | 11 | 209 | 15 | 218 | 1.38e-27 | 104 |
| MS.gene25132.t1 | AT5G39120 | 34.722 | 216 | 130 | 5 | 4 | 209 | 5 | 219 | 1.65e-27 | 104 |
| MS.gene25132.t1 | AT5G39150 | 34.722 | 216 | 130 | 5 | 4 | 209 | 5 | 219 | 1.82e-27 | 104 |
| MS.gene25132.t1 | AT3G10080 | 31.156 | 199 | 131 | 2 | 17 | 209 | 21 | 219 | 5.58e-26 | 100 |
| MS.gene25132.t1 | AT3G10080 | 33.503 | 197 | 111 | 5 | 26 | 209 | 101 | 290 | 1.17e-25 | 101 |
| MS.gene25132.t1 | AT1G18970 | 31.925 | 213 | 139 | 4 | 2 | 210 | 9 | 219 | 1.89e-25 | 99.0 |
| MS.gene25132.t1 | AT5G39190 | 32.195 | 205 | 113 | 3 | 12 | 210 | 14 | 198 | 2.21e-25 | 98.6 |
| MS.gene25132.t1 | AT3G62020 | 35.429 | 175 | 108 | 4 | 41 | 210 | 13 | 187 | 3.41e-25 | 97.8 |
| MS.gene25132.t1 | AT5G39160 | 31.707 | 205 | 114 | 3 | 12 | 210 | 14 | 198 | 5.46e-25 | 97.4 |
| MS.gene25132.t1 | AT1G10460 | 37.107 | 159 | 93 | 5 | 26 | 177 | 23 | 181 | 3.28e-24 | 95.9 |
| MS.gene25132.t1 | AT1G74820 | 42.857 | 133 | 72 | 3 | 27 | 157 | 41 | 171 | 1.13e-23 | 94.7 |
| MS.gene25132.t1 | AT5G38910 | 29.717 | 212 | 102 | 5 | 7 | 209 | 9 | 182 | 1.94e-15 | 71.6 |
Find 36 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACTTGATTATCTATTATT+TGG | 0.155412 | 8.4:-72847437 | MS.gene25132:CDS |
| ACCAGTTTACCTGGTCTTAA+TGG | 0.209440 | 8.4:-72847725 | MS.gene25132:CDS |
| ACAAAATGCAAAAGCCCTTC+TGG | 0.264438 | 8.4:+72847527 | None:intergenic |
| TCTGCTGGAAGAGGAGATTT+TGG | 0.267961 | 8.4:-72847692 | MS.gene25132:CDS |
| GAATTAGTTATCGTGGTTAA+AGG | 0.280928 | 8.4:-72847626 | MS.gene25132:CDS |
| GTGGTTAATCTAACATTAAA+AGG | 0.285906 | 8.4:+72847758 | None:intergenic |
| GTTGGAAATGCTATTGCTTT+TGG | 0.309862 | 8.4:-72847491 | MS.gene25132:CDS |
| GACAGAAGAAGTTGCAGTTT+GGG | 0.342150 | 8.4:+72847907 | None:intergenic |
| AAAGGGTCTATTGTGTTTCC+AGG | 0.347883 | 8.4:+72847776 | None:intergenic |
| TGACAGAAGAAGTTGCAGTT+TGG | 0.368327 | 8.4:+72847906 | None:intergenic |
| TCCATTAAGACCAGGTAAAC+TGG | 0.370975 | 8.4:+72847724 | None:intergenic |
| ATAAAGCTTAAGAATCAGTT+TGG | 0.389749 | 8.4:-72847356 | MS.gene25132:CDS |
| GGATAGCCTGAAGGAGTGTT+TGG | 0.395462 | 8.4:+72847854 | None:intergenic |
| GTGTTCTCTGGCTTTGTACC+TGG | 0.400296 | 8.4:-72847794 | MS.gene25132:CDS |
| CAGCTTCCAAACACTCCTTC+AGG | 0.418699 | 8.4:-72847860 | MS.gene25132:CDS |
| TTTGTAGTTAACTCTGGTGT+TGG | 0.425062 | 8.4:-72847509 | MS.gene25132:CDS |
| GCATTTGTCACCAGTTTACC+TGG | 0.439631 | 8.4:-72847734 | MS.gene25132:CDS |
| AAGAATCAGTTTGGTGGTAG+TGG | 0.444437 | 8.4:-72847347 | MS.gene25132:CDS |
| TAATAAATCCAGCAGTCAAT+TGG | 0.460927 | 8.4:+72847603 | None:intergenic |
| TTACCTGGTCTTAATGGACT+TGG | 0.465576 | 8.4:-72847719 | MS.gene25132:CDS |
| TAGTAGCTCAAACCCTAAAA+CGG | 0.473073 | 8.4:-72847462 | MS.gene25132:CDS |
| AATGGACTTGGTATATCTGC+TGG | 0.482284 | 8.4:-72847707 | MS.gene25132:CDS |
| ATAACTAATTCAGTTGCATC+AGG | 0.492749 | 8.4:+72847638 | None:intergenic |
| GTTAAAGGCCAATTGACTGC+TGG | 0.522198 | 8.4:-72847611 | MS.gene25132:CDS |
| ACACTTGTTTCTGACTTGCA+TGG | 0.533166 | 8.4:+72847833 | None:intergenic |
| CTTGGTATATCTGCTGGAAG+AGG | 0.540629 | 8.4:-72847701 | MS.gene25132:CDS |
| TGGTTAATCTAACATTAAAA+GGG | 0.555953 | 8.4:+72847759 | None:intergenic |
| TATTTGAAAACTGTTAAACC+TGG | 0.562860 | 8.4:-72847566 | MS.gene25132:CDS |
| AAGCTTAAGAATCAGTTTGG+TGG | 0.578020 | 8.4:-72847353 | MS.gene25132:CDS |
| TGCAACTGAATTAGTTATCG+TGG | 0.584807 | 8.4:-72847633 | MS.gene25132:CDS |
| AGAAGAAGTTGCAGTTTGGG+AGG | 0.599718 | 8.4:+72847910 | None:intergenic |
| GCATCAGGATGAGTGAGCAT+TGG | 0.603045 | 8.4:+72847653 | None:intergenic |
| GACTTGCATGGATAGCCTGA+AGG | 0.608627 | 8.4:+72847845 | None:intergenic |
| TTCTGTCAATGATTTCTGTG+TGG | 0.614592 | 8.4:-72847891 | MS.gene25132:CDS |
| ATACCAAGTCCATTAAGACC+AGG | 0.671415 | 8.4:+72847716 | None:intergenic |
| TAAACTGGTGACAAATGCAG+TGG | 0.677227 | 8.4:+72847739 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTTGATTATCTATTATT+TGG | - | chr8.4:72847868-72847887 | MS.gene25132:CDS | 15.0% |
| !! | TGGTTAATCTAACATTAAAA+GGG | + | chr8.4:72847549-72847568 | None:intergenic | 20.0% |
| !!! | GTTTTCAAATAAACTTTTGT+TGG | + | chr8.4:72847730-72847749 | None:intergenic | 20.0% |
| ! | ATAAAGCTTAAGAATCAGTT+TGG | - | chr8.4:72847949-72847968 | MS.gene25132:CDS | 25.0% |
| ! | GTGGTTAATCTAACATTAAA+AGG | + | chr8.4:72847550-72847569 | None:intergenic | 25.0% |
| ! | TATTTGAAAACTGTTAAACC+TGG | - | chr8.4:72847739-72847758 | MS.gene25132:CDS | 25.0% |
| !! | AATCAAGTATTTCCGTTTTA+GGG | + | chr8.4:72847858-72847877 | None:intergenic | 25.0% |
| !! | ATATTGTAGTTTTTCCAGAA+GGG | - | chr8.4:72847764-72847783 | MS.gene25132:CDS | 25.0% |
| !! | TAATCAAGTATTTCCGTTTT+AGG | + | chr8.4:72847859-72847878 | None:intergenic | 25.0% |
| ATAACTAATTCAGTTGCATC+AGG | + | chr8.4:72847670-72847689 | None:intergenic | 30.0% | |
| GAATTAGTTATCGTGGTTAA+AGG | - | chr8.4:72847679-72847698 | MS.gene25132:CDS | 30.0% | |
| TAATAAATCCAGCAGTCAAT+TGG | + | chr8.4:72847705-72847724 | None:intergenic | 30.0% | |
| ! | GATATTGTAGTTTTTCCAGA+AGG | - | chr8.4:72847763-72847782 | MS.gene25132:CDS | 30.0% |
| ! | TTGCATTTTGTAGTTAACTC+TGG | - | chr8.4:72847790-72847809 | MS.gene25132:CDS | 30.0% |
| !! | AGAGGAGATTTTGGTATAAA+TGG | - | chr8.4:72847622-72847641 | MS.gene25132:CDS | 30.0% |
| AAGCTTAAGAATCAGTTTGG+TGG | - | chr8.4:72847952-72847971 | MS.gene25132:CDS | 35.0% | |
| GGAAAAACTACAATATCACC+AGG | + | chr8.4:72847760-72847779 | None:intergenic | 35.0% | |
| TAGTAGCTCAAACCCTAAAA+CGG | - | chr8.4:72847843-72847862 | MS.gene25132:CDS | 35.0% | |
| TGCAACTGAATTAGTTATCG+TGG | - | chr8.4:72847672-72847691 | MS.gene25132:CDS | 35.0% | |
| TTCTGTCAATGATTTCTGTG+TGG | - | chr8.4:72847414-72847433 | MS.gene25132:CDS | 35.0% | |
| TTTGTAGTTAACTCTGGTGT+TGG | - | chr8.4:72847796-72847815 | MS.gene25132:CDS | 35.0% | |
| ! | GTTGGAAATGCTATTGCTTT+TGG | - | chr8.4:72847814-72847833 | MS.gene25132:CDS | 35.0% |
| AAAGGGTCTATTGTGTTTCC+AGG | + | chr8.4:72847532-72847551 | None:intergenic | 40.0% | |
| ACAAAATGCAAAAGCCCTTC+TGG | + | chr8.4:72847781-72847800 | None:intergenic | 40.0% | |
| ATACCAAGTCCATTAAGACC+AGG | + | chr8.4:72847592-72847611 | None:intergenic | 40.0% | |
| GACAGAAGAAGTTGCAGTTT+GGG | + | chr8.4:72847401-72847420 | None:intergenic | 40.0% | |
| TAAACTGGTGACAAATGCAG+TGG | + | chr8.4:72847569-72847588 | None:intergenic | 40.0% | |
| TCCATTAAGACCAGGTAAAC+TGG | + | chr8.4:72847584-72847603 | None:intergenic | 40.0% | |
| TGACAGAAGAAGTTGCAGTT+TGG | + | chr8.4:72847402-72847421 | None:intergenic | 40.0% | |
| ! | AAGAATCAGTTTGGTGGTAG+TGG | - | chr8.4:72847958-72847977 | MS.gene25132:CDS | 40.0% |
| ! | AATGGACTTGGTATATCTGC+TGG | - | chr8.4:72847598-72847617 | MS.gene25132:CDS | 40.0% |
| ! | GCAGATGATTTTGTGTTCTC+TGG | - | chr8.4:72847499-72847518 | MS.gene25132:CDS | 40.0% |
| !! | ACACTTGTTTCTGACTTGCA+TGG | + | chr8.4:72847475-72847494 | None:intergenic | 40.0% |
| !! | ACCAGTTTACCTGGTCTTAA+TGG | - | chr8.4:72847580-72847599 | MS.gene25132:CDS | 40.0% |
| !! | TTACCTGGTCTTAATGGACT+TGG | - | chr8.4:72847586-72847605 | MS.gene25132:CDS | 40.0% |
| AGAAGAAGTTGCAGTTTGGG+AGG | + | chr8.4:72847398-72847417 | None:intergenic | 45.0% | |
| CTTGGTATATCTGCTGGAAG+AGG | - | chr8.4:72847604-72847623 | MS.gene25132:CDS | 45.0% | |
| GCATTTGTCACCAGTTTACC+TGG | - | chr8.4:72847571-72847590 | MS.gene25132:CDS | 45.0% | |
| GTTAAAGGCCAATTGACTGC+TGG | - | chr8.4:72847694-72847713 | MS.gene25132:CDS | 45.0% | |
| ! | TCTGCTGGAAGAGGAGATTT+TGG | - | chr8.4:72847613-72847632 | MS.gene25132:CDS | 45.0% |
| CAGCTTCCAAACACTCCTTC+AGG | - | chr8.4:72847445-72847464 | MS.gene25132:CDS | 50.0% | |
| GACTTGCATGGATAGCCTGA+AGG | + | chr8.4:72847463-72847482 | None:intergenic | 50.0% | |
| GCATCAGGATGAGTGAGCAT+TGG | + | chr8.4:72847655-72847674 | None:intergenic | 50.0% | |
| !! | GGATAGCCTGAAGGAGTGTT+TGG | + | chr8.4:72847454-72847473 | None:intergenic | 50.0% |
| !! | GTGTTCTCTGGCTTTGTACC+TGG | - | chr8.4:72847511-72847530 | MS.gene25132:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 72847343 | 72847984 | 72847343 | ID=MS.gene25132 |
| chr8.4 | mRNA | 72847343 | 72847984 | 72847343 | ID=MS.gene25132.t1;Parent=MS.gene25132 |
| chr8.4 | exon | 72847343 | 72847984 | 72847343 | ID=MS.gene25132.t1.exon1;Parent=MS.gene25132.t1 |
| chr8.4 | CDS | 72847343 | 72847984 | 72847343 | ID=cds.MS.gene25132.t1;Parent=MS.gene25132.t1 |
| Gene Sequence |
| Protein sequence |
