Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25167.t1 | XP_013466598.1 | 96.2 | 1072 | 41 | 0 | 1 | 1072 | 1 | 1072 | 0.00E+00 | 2075.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25167.t1 | Q9LQV2 | 52.5 | 1088 | 479 | 8 | 1 | 1076 | 1 | 1062 | 0.0e+00 | 1126.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25167.t1 | A0A072VF26 | 96.2 | 1072 | 41 | 0 | 1 | 1072 | 1 | 1072 | 0.0e+00 | 2075.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene25167 | 0.824989 | 5.98E-54 | -1.69E-46 |
| MS.gene049711 | MS.gene25167 | 0.801727 | 7.86E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene25167 | 0.805004 | 1.65E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene25167 | 0.828332 | 9.54E-55 | -1.69E-46 |
| MS.gene058668 | MS.gene25167 | 0.802319 | 5.94E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene25167 | 0.80216 | 6.40E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25167.t1 | MTR_1g032590 | 95.725 | 1076 | 46 | 0 | 1 | 1076 | 1 | 1076 | 0.0 | 2127 |
| MS.gene25167.t1 | MTR_1g032610 | 53.382 | 1094 | 464 | 10 | 3 | 1076 | 5 | 1072 | 0.0 | 1152 |
| MS.gene25167.t1 | MTR_1g032630 | 53.309 | 1088 | 471 | 10 | 3 | 1076 | 5 | 1069 | 0.0 | 1151 |
| MS.gene25167.t1 | MTR_1g032720 | 53.162 | 1091 | 471 | 10 | 3 | 1076 | 614 | 1681 | 0.0 | 1135 |
| MS.gene25167.t1 | MTR_1g032720 | 49.120 | 625 | 293 | 7 | 3 | 607 | 5 | 624 | 0.0 | 592 |
| MS.gene25167.t1 | MTR_1g032610 | 54.785 | 1024 | 420 | 9 | 70 | 1076 | 12 | 1009 | 0.0 | 1114 |
| MS.gene25167.t1 | MTR_1g032630 | 52.114 | 804 | 352 | 9 | 3 | 792 | 5 | 789 | 0.0 | 811 |
| MS.gene25167.t1 | MTR_4g106660 | 37.284 | 1097 | 641 | 15 | 4 | 1068 | 10 | 1091 | 0.0 | 733 |
| MS.gene25167.t1 | MTR_4g106660 | 37.284 | 1097 | 641 | 15 | 4 | 1068 | 10 | 1091 | 0.0 | 733 |
| MS.gene25167.t1 | MTR_4g106660 | 50.000 | 106 | 53 | 0 | 837 | 942 | 1113 | 1218 | 4.16e-24 | 110 |
| MS.gene25167.t1 | MTR_1g032710 | 58.755 | 514 | 186 | 4 | 554 | 1061 | 1 | 494 | 0.0 | 619 |
| MS.gene25167.t1 | MTR_3g107390 | 33.590 | 1170 | 642 | 27 | 5 | 1079 | 17 | 1146 | 0.0 | 590 |
| MS.gene25167.t1 | MTR_6g088660 | 23.188 | 552 | 314 | 21 | 469 | 936 | 303 | 828 | 1.98e-15 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25167.t1 | AT1G14790 | 52.390 | 1088 | 480 | 8 | 1 | 1076 | 1 | 1062 | 0.0 | 1159 |
| MS.gene25167.t1 | AT4G11130 | 39.512 | 1106 | 604 | 27 | 4 | 1069 | 11 | 1091 | 0.0 | 723 |
| MS.gene25167.t1 | AT3G49500 | 36.346 | 1040 | 578 | 26 | 95 | 1076 | 130 | 1143 | 3.15e-180 | 559 |
| MS.gene25167.t1 | AT3G49500 | 36.346 | 1040 | 578 | 26 | 95 | 1076 | 130 | 1143 | 3.15e-180 | 559 |
| MS.gene25167.t1 | AT3G49500 | 36.346 | 1040 | 578 | 26 | 95 | 1076 | 130 | 1143 | 3.15e-180 | 559 |
| MS.gene25167.t1 | AT3G49500 | 36.346 | 1040 | 578 | 26 | 95 | 1076 | 130 | 1143 | 3.15e-180 | 559 |
| MS.gene25167.t1 | AT3G49500 | 36.346 | 1040 | 578 | 26 | 95 | 1076 | 130 | 1143 | 3.15e-180 | 559 |
| MS.gene25167.t1 | AT2G19930 | 24.523 | 681 | 378 | 27 | 349 | 938 | 195 | 830 | 6.70e-27 | 119 |
| MS.gene25167.t1 | AT2G19930 | 24.523 | 681 | 378 | 27 | 349 | 938 | 201 | 836 | 7.16e-27 | 119 |
| MS.gene25167.t1 | AT2G19930 | 24.412 | 680 | 386 | 26 | 349 | 938 | 195 | 836 | 2.06e-26 | 117 |
| MS.gene25167.t1 | AT2G19920 | 23.043 | 677 | 378 | 26 | 352 | 936 | 208 | 833 | 6.87e-23 | 106 |
| MS.gene25167.t1 | AT2G19920 | 23.043 | 677 | 378 | 26 | 352 | 936 | 209 | 834 | 7.56e-23 | 105 |
| MS.gene25167.t1 | AT2G19920 | 23.043 | 677 | 378 | 26 | 352 | 936 | 208 | 833 | 8.09e-23 | 105 |
| MS.gene25167.t1 | AT2G19920 | 23.043 | 677 | 378 | 26 | 352 | 936 | 222 | 847 | 1.07e-22 | 105 |
| MS.gene25167.t1 | AT2G19910 | 25.918 | 463 | 261 | 17 | 529 | 936 | 403 | 838 | 7.42e-22 | 102 |
| MS.gene25167.t1 | AT2G19910 | 25.636 | 472 | 260 | 17 | 529 | 936 | 403 | 847 | 6.88e-21 | 99.8 |
Find 166 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAAATCAAGTACTTTA+AGG | 0.132164 | 1.3:+17519158 | MS.gene25167:CDS |
| TCAAGTGCTTCTGTTAAATT+TGG | 0.144113 | 1.3:+17518876 | MS.gene25167:CDS |
| AGGACCACAGAAATATATTT+TGG | 0.177661 | 1.3:-17519703 | None:intergenic |
| GATCATGACATGAAGATTAA+TGG | 0.221198 | 1.3:+17521970 | MS.gene25167:CDS |
| TATGTCCTCTATTTCTTCTA+AGG | 0.262191 | 1.3:+17520799 | MS.gene25167:CDS |
| AGTTCCATTTCTTTAGATAA+TGG | 0.289085 | 1.3:+17519645 | MS.gene25167:CDS |
| TACCAAGTTGATGAACTTAA+TGG | 0.295577 | 1.3:+17522041 | MS.gene25167:CDS |
| TTAAGGATCGAGTCTTTAAA+AGG | 0.296248 | 1.3:+17520468 | MS.gene25167:CDS |
| TAAAGCAACTAACCTGAAAA+AGG | 0.303754 | 1.3:-17519025 | None:intergenic |
| TAAGGAATGAAGCTAGAAAT+TGG | 0.316555 | 1.3:+17522178 | MS.gene25167:CDS |
| CCACAGGTGATATAAGAAAA+TGG | 0.319961 | 1.3:+17520012 | MS.gene25167:CDS |
| GAACATTTCCACTGTAAGAT+AGG | 0.336252 | 1.3:-17518725 | None:intergenic |
| CGTTCATCCGATTTGTTGTC+AGG | 0.338642 | 1.3:+17519822 | MS.gene25167:CDS |
| TACTGTTTCTCTGATGGAAT+AGG | 0.353907 | 1.3:+17520182 | MS.gene25167:CDS |
| TATGGCAAGTTGAATCCTTC+TGG | 0.354659 | 1.3:-17519396 | None:intergenic |
| AGAGAAAACTTAGTGTACTT+TGG | 0.354703 | 1.3:+17518847 | MS.gene25167:CDS |
| GAACGATTACAGACATGTTA+AGG | 0.356086 | 1.3:+17520567 | MS.gene25167:CDS |
| GCTTACAACATGGATGGTAT+TGG | 0.360043 | 1.3:+17518798 | MS.gene25167:CDS |
| GAGAAAACTTAGTGTACTTT+GGG | 0.363652 | 1.3:+17518848 | MS.gene25167:CDS |
| CTCAAAATCCTTACATCTCC+TGG | 0.368528 | 1.3:-17520893 | None:intergenic |
| TGGATGAAGACATGGATTCT+TGG | 0.373145 | 1.3:-17520873 | None:intergenic |
| AGGAAGCTTATGACAATCAT+TGG | 0.375647 | 1.3:+17519178 | MS.gene25167:CDS |
| TATCAATCAAACAGCATAAT+CGG | 0.377820 | 1.3:+17521862 | MS.gene25167:CDS |
| AGGGAAAATATCATATGAAT+TGG | 0.379623 | 1.3:+17520202 | MS.gene25167:CDS |
| CAATCCATTATCTAAAGAAA+TGG | 0.380201 | 1.3:-17519649 | None:intergenic |
| TGGATGTTTGCACCGAGAAC+TGG | 0.381059 | 1.3:+17519984 | MS.gene25167:CDS |
| GAAAGTTTAGTTGATGAGTT+AGG | 0.381385 | 1.3:-17520323 | None:intergenic |
| AAAAGGAAAATATATTGTTA+AGG | 0.383734 | 1.3:+17520835 | MS.gene25167:CDS |
| TCACTTCCTGAACATTCATT+AGG | 0.385378 | 1.3:-17521298 | None:intergenic |
| ATGCTGTTTGATTGATAAGT+TGG | 0.385994 | 1.3:-17521856 | None:intergenic |
| AGGAAGTTATCGGTGTCTTC+AGG | 0.387986 | 1.3:-17519762 | None:intergenic |
| ACACACTGTGTTTGCTGATA+AGG | 0.389362 | 1.3:+17521684 | MS.gene25167:CDS |
| TCTCTACAGCAAGAACAGTT+TGG | 0.392593 | 1.3:-17518605 | None:intergenic |
| GAAACAAGGACATTAAAATA+TGG | 0.393289 | 1.3:+17520737 | MS.gene25167:CDS |
| AAAGGAAAATATATTGTTAA+GGG | 0.397381 | 1.3:+17520836 | MS.gene25167:CDS |
| TGATCATGATGTCACATTAC+AGG | 0.397919 | 1.3:+17521420 | MS.gene25167:CDS |
| GCCGTTGATTTCGCAAAATC+CGG | 0.398804 | 1.3:+17521763 | MS.gene25167:CDS |
| CACTCTATAAGTTGTACTCC+TGG | 0.400162 | 1.3:-17522400 | None:intergenic |
| TCTATTTCTTCTAAGGGCAT+TGG | 0.408929 | 1.3:+17520806 | MS.gene25167:CDS |
| GAGATATCTACTTTGTCTGT+TGG | 0.411478 | 1.3:+17521329 | MS.gene25167:CDS |
| AAAGAAATGGAACTAGATAT+AGG | 0.411648 | 1.3:-17519636 | None:intergenic |
| GCTTCAGCAGAAACATTAGA+TGG | 0.411760 | 1.3:-17518549 | None:intergenic |
| CCACATCCTAATGAATGTTC+AGG | 0.418179 | 1.3:+17521292 | MS.gene25167:CDS |
| ACTGTTTCTCTGATGGAATA+GGG | 0.419913 | 1.3:+17520183 | MS.gene25167:CDS |
| AAAACAATATCCAGATTTCA+TGG | 0.421729 | 1.3:+17521819 | MS.gene25167:CDS |
| TCTGCATTTCAAATCAGATA+TGG | 0.422172 | 1.3:+17520272 | MS.gene25167:CDS |
| GAAAGAAAAGGTTCATTTGT+CGG | 0.422221 | 1.3:-17520614 | None:intergenic |
| CTTGGCTTTGACAAAATGTC+AGG | 0.422783 | 1.3:-17518768 | None:intergenic |
| AAGATCAATGTTAGGATGCT+TGG | 0.424863 | 1.3:+17520712 | MS.gene25167:CDS |
| TGTTTCTCCAACCATTGAAC+AGG | 0.435706 | 1.3:-17519582 | None:intergenic |
| ATCAAATACTGTTTCTCTGA+TGG | 0.444190 | 1.3:+17520176 | MS.gene25167:CDS |
| AGATATCTACTTTGTCTGTT+GGG | 0.445837 | 1.3:+17521330 | MS.gene25167:CDS |
| TGCTCTTATTCCTCCTCATC+GGG | 0.447459 | 1.3:+17521357 | MS.gene25167:CDS |
| TGTACCTTCCTTACATCATA+TGG | 0.448881 | 1.3:+17520925 | MS.gene25167:CDS |
| CGGAAAGGAAGATCAATGTT+AGG | 0.451061 | 1.3:+17520704 | MS.gene25167:CDS |
| CTCCATTAAGTTCATCAACT+TGG | 0.451169 | 1.3:-17522043 | None:intergenic |
| CTTATGCTATTGCTTCTGCT+TGG | 0.458295 | 1.3:+17522256 | MS.gene25167:CDS |
| CGATTCGAAAGATTCACTTC+AGG | 0.464338 | 1.3:-17519723 | None:intergenic |
| TTAAGGGAAATGATTATTTG+TGG | 0.471129 | 1.3:+17520584 | MS.gene25167:CDS |
| CCTGTGGTTAGTCCAGTTCT+CGG | 0.472970 | 1.3:-17519996 | None:intergenic |
| TGCTGATAAGGAACCTGAAA+AGG | 0.473428 | 1.3:+17521696 | MS.gene25167:CDS |
| AACGATTACAGACATGTTAA+GGG | 0.477883 | 1.3:+17520568 | MS.gene25167:CDS |
| GCAAAATATGCAGCAAGGCT+TGG | 0.480669 | 1.3:+17520065 | MS.gene25167:CDS |
| AAAATCTTTCAATGATAGAA+AGG | 0.485099 | 1.3:+17522122 | MS.gene25167:CDS |
| GTTGTCCACACTCGGTGTTA+AGG | 0.486260 | 1.3:+17520451 | MS.gene25167:CDS |
| TTCACCCCATCATGCTGCAT+TGG | 0.488452 | 1.3:+17519216 | MS.gene25167:CDS |
| CTCAACATCATGGAAAGAAA+AGG | 0.489664 | 1.3:-17520626 | None:intergenic |
| CTGCTCTTATTCCTCCTCAT+CGG | 0.490260 | 1.3:+17521356 | MS.gene25167:CDS |
| GTCTTCATCCAGGAGATGTA+AGG | 0.496818 | 1.3:+17520885 | MS.gene25167:CDS |
| ATGTCCTCTATTTCTTCTAA+GGG | 0.500650 | 1.3:+17520800 | MS.gene25167:CDS |
| AAGAATTGCAGCTCAAAGCT+AGG | 0.502836 | 1.3:+17520672 | MS.gene25167:CDS |
| GAGATTAAGCATCATAAAGA+TGG | 0.503270 | 1.3:+17518624 | MS.gene25167:CDS |
| CATTTCTTTAGATAATGGAT+TGG | 0.507709 | 1.3:+17519650 | MS.gene25167:CDS |
| TTAGATGGTGAATGATCCAT+TGG | 0.508279 | 1.3:-17521385 | None:intergenic |
| GATGGTATTGGAATACACTT+TGG | 0.512546 | 1.3:+17518810 | MS.gene25167:CDS |
| AGAAACGCGAAGGAAGTTAT+CGG | 0.513632 | 1.3:-17519772 | None:intergenic |
| AGAGGAACCTGACAACAAAT+CGG | 0.515016 | 1.3:-17519829 | None:intergenic |
| AATGCCCTTAGAAGAAATAG+AGG | 0.516330 | 1.3:-17520804 | None:intergenic |
| ACAGTCCACCATATGATGTA+AGG | 0.516847 | 1.3:-17520933 | None:intergenic |
| CGATGAGGAGGAATAAGAGC+AGG | 0.517920 | 1.3:-17521355 | None:intergenic |
| AGATAAAGAAGGACAAAGCC+AGG | 0.518615 | 1.3:+17522382 | MS.gene25167:intron |
| AGGTGATATAAGAAAATGGA+TGG | 0.520503 | 1.3:+17520016 | MS.gene25167:CDS |
| ATTGTCCAATGCAGCATGAT+GGG | 0.523291 | 1.3:-17519221 | None:intergenic |
| AGAAACAAAGGTTCATCAAA+GGG | 0.524990 | 1.3:+17519869 | MS.gene25167:CDS |
| ATCGTTCTGTTGTCCACACT+CGG | 0.527119 | 1.3:+17520443 | MS.gene25167:CDS |
| TTCGCAAGCTCTATACATGA+AGG | 0.527235 | 1.3:-17521727 | None:intergenic |
| CTTGCACATGCTATTTCTCA+AGG | 0.527940 | 1.3:-17520345 | None:intergenic |
| ATCTAATGTTTCTGCTGAAG+CGG | 0.530713 | 1.3:+17518551 | MS.gene25167:CDS |
| TCTTACCTTCTCCCTTTCTG+TGG | 0.533280 | 1.3:-17520965 | None:intergenic |
| AATGATAGAAAGGACAAAGA+AGG | 0.534460 | 1.3:+17522132 | MS.gene25167:CDS |
| CCTGAACATTCATTAGGATG+TGG | 0.535870 | 1.3:-17521292 | None:intergenic |
| CTTACCTTCTCCCTTTCTGT+GGG | 0.538379 | 1.3:-17520964 | None:intergenic |
| ACATATTGTTCTCAACATCA+TGG | 0.538517 | 1.3:-17520636 | None:intergenic |
| ATGAACTTAATGGAGCACTA+TGG | 0.541108 | 1.3:+17522051 | MS.gene25167:CDS |
| AAAATATATTGTTAAGGGGA+AGG | 0.542337 | 1.3:+17520841 | MS.gene25167:CDS |
| TGCTGTTGCAATAACTCCTA+AGG | 0.542803 | 1.3:-17521662 | None:intergenic |
| GAGAAACAAAGGTTCATCAA+AGG | 0.542888 | 1.3:+17519868 | MS.gene25167:CDS |
| TTTGATCTTGAGAAACAACT+TGG | 0.543715 | 1.3:+17519333 | MS.gene25167:CDS |
| GTCAGTTACGCAGTGCTCCT+CGG | 0.544392 | 1.3:+17519118 | MS.gene25167:intron |
| AGTCTTTAAAAGGAAGCAAA+GGG | 0.544858 | 1.3:+17520478 | MS.gene25167:CDS |
| ATCTTTGCTTACAACATGGA+TGG | 0.545079 | 1.3:+17518792 | MS.gene25167:CDS |
| TCAAGAGAAACAGTGAGTGT+TGG | 0.545595 | 1.3:+17520104 | MS.gene25167:CDS |
| CCTGATATAGAATTGAAAAG+AGG | 0.545856 | 1.3:+17520149 | MS.gene25167:CDS |
| GTTGCTATGATCCTGTTCAA+TGG | 0.545883 | 1.3:+17519571 | MS.gene25167:CDS |
| TTTCGCAAAATCCGGCGTGC+CGG | 0.546053 | 1.3:+17521771 | MS.gene25167:CDS |
| CTATGATCCTGTTCAATGGT+TGG | 0.546223 | 1.3:+17519575 | MS.gene25167:CDS |
| CCTTCTGGTGGAATCACCAT+GGG | 0.546859 | 1.3:-17519381 | None:intergenic |
| ATCATGCAGTGATGTCACTA+AGG | 0.546956 | 1.3:+17522160 | MS.gene25167:CDS |
| TGTCAATTGCTTGCAAAGGA+AGG | 0.548121 | 1.3:-17519461 | None:intergenic |
| TGTAAGACAATTCAAATACA+TGG | 0.550603 | 1.3:+17518522 | MS.gene25167:CDS |
| ATGTTGTAAGCAAAGATCCT+TGG | 0.552810 | 1.3:-17518786 | None:intergenic |
| ACAACAGAACGATTACTTGA+CGG | 0.558329 | 1.3:-17520433 | None:intergenic |
| AAGAATCCATGTCTTCATCC+AGG | 0.558868 | 1.3:+17520875 | MS.gene25167:CDS |
| TACATTGTCAAAGACACCTT+AGG | 0.559265 | 1.3:+17521646 | MS.gene25167:CDS |
| TCCTCATCGGGAAAATCCAA+TGG | 0.563415 | 1.3:+17521369 | MS.gene25167:CDS |
| GAGTCTTTAAAAGGAAGCAA+AGG | 0.569738 | 1.3:+17520477 | MS.gene25167:CDS |
| GATTGTCCAATGCAGCATGA+TGG | 0.570730 | 1.3:-17519222 | None:intergenic |
| ATCAGATATGGTGGATACAA+AGG | 0.572566 | 1.3:+17520284 | MS.gene25167:CDS |
| ATCATGTCGAGTGCATTGAA+TGG | 0.577024 | 1.3:-17520536 | None:intergenic |
| AAGTTGTTTCTCAAGATCAA+AGG | 0.577468 | 1.3:-17519331 | None:intergenic |
| TATCTGATTTGAAATGCAGA+TGG | 0.580249 | 1.3:-17520269 | None:intergenic |
| GCATTTCAAATCAGATATGG+TGG | 0.580941 | 1.3:+17520275 | MS.gene25167:CDS |
| TCTGTCCACGTCTATACAAG+AGG | 0.585369 | 1.3:-17519847 | None:intergenic |
| TTAGTGTCAATTGCTTGCAA+AGG | 0.587391 | 1.3:-17519465 | None:intergenic |
| TACTCTTATTCAGATAAAGA+AGG | 0.588825 | 1.3:+17522371 | MS.gene25167:intron |
| AAGGAAAATATATTGTTAAG+GGG | 0.591481 | 1.3:+17520837 | MS.gene25167:CDS |
| TGTTAAGGGGAAGGTAGTTG+TGG | 0.591754 | 1.3:+17520850 | MS.gene25167:CDS |
| TGGTACTTCAGCCGGCACGC+CGG | 0.600336 | 1.3:-17521782 | None:intergenic |
| TCGATCCTTAACACCGAGTG+TGG | 0.601439 | 1.3:-17520456 | None:intergenic |
| ATAAGAAAATCAAATTCTCA+AGG | 0.603489 | 1.3:+17522213 | MS.gene25167:CDS |
| CCCTCCAAAATATATTTCTG+TGG | 0.606687 | 1.3:+17519699 | MS.gene25167:CDS |
| TCCTTCTGGTGGAATCACCA+TGG | 0.610011 | 1.3:-17519382 | None:intergenic |
| TGAATGTTCAGGAAGTGACT+TGG | 0.612881 | 1.3:+17521303 | MS.gene25167:CDS |
| ACTTGACGGTTAAGAAAGCA+CGG | 0.614109 | 1.3:-17520419 | None:intergenic |
| CAATACTAGATGTATTGTCA+TGG | 0.614959 | 1.3:+17520384 | MS.gene25167:CDS |
| GGCAAGTTGAATCCTTCTGG+TGG | 0.616684 | 1.3:-17519393 | None:intergenic |
| ACATCTCCTGGATGAAGACA+TGG | 0.618058 | 1.3:-17520881 | None:intergenic |
| CCCATGGTGATTCCACCAGA+AGG | 0.619746 | 1.3:+17519381 | MS.gene25167:CDS |
| CTTCAGCAGAAACATTAGAT+GGG | 0.621625 | 1.3:-17518548 | None:intergenic |
| CTGACAACAAATCGGATGAA+CGG | 0.624115 | 1.3:-17519821 | None:intergenic |
| TCGCAAGCTCTATACATGAA+GGG | 0.624470 | 1.3:-17521726 | None:intergenic |
| ACTTTGGCTACAGGATGTAG+AGG | 0.624783 | 1.3:+17521609 | MS.gene25167:intron |
| TGTTCAGGAAGTGACTTGGA+TGG | 0.629681 | 1.3:+17521307 | MS.gene25167:CDS |
| TCCACCATATGATGTAAGGA+AGG | 0.632969 | 1.3:-17520929 | None:intergenic |
| GGTGATATAAGAAAATGGAT+GGG | 0.634803 | 1.3:+17520017 | MS.gene25167:CDS |
| CCGAGAACTGGACTAACCAC+AGG | 0.638320 | 1.3:+17519996 | MS.gene25167:CDS |
| ACAGAAGCAGAAATAATCAG+TGG | 0.638823 | 1.3:+17522081 | MS.gene25167:CDS |
| AGGTTCCTCTTGTATAGACG+TGG | 0.643676 | 1.3:+17519842 | MS.gene25167:CDS |
| CATCAACAAAAGAAACGCGA+AGG | 0.645316 | 1.3:-17519782 | None:intergenic |
| AAGGACATTAAAATATGGAG+AGG | 0.645356 | 1.3:+17520742 | MS.gene25167:CDS |
| AAGGATCTTTGCTTACAACA+TGG | 0.646173 | 1.3:+17518788 | MS.gene25167:CDS |
| AGACGTGGACAGAGAAACAA+AGG | 0.646727 | 1.3:+17519857 | MS.gene25167:CDS |
| ATGTGGCAAAATATGCAGCA+AGG | 0.659612 | 1.3:+17520060 | MS.gene25167:CDS |
| ACCTTCCTTACATCATATGG+TGG | 0.663906 | 1.3:+17520928 | MS.gene25167:CDS |
| GATGAGGAGGAATAAGAGCA+GGG | 0.664145 | 1.3:-17521354 | None:intergenic |
| AGAAAATCAAATTCTCAAGG+TGG | 0.664767 | 1.3:+17522216 | MS.gene25167:CDS |
| TGACCTTCCACAAAATACCG+AGG | 0.677464 | 1.3:+17519260 | MS.gene25167:CDS |
| GTGCAACATTCTTCACCTCG+CGG | 0.681079 | 1.3:-17521894 | None:intergenic |
| TAGGATGCTTGGATGAAACA+AGG | 0.681329 | 1.3:+17520723 | MS.gene25167:CDS |
| GACATCATGATCAACATGCA+TGG | 0.687239 | 1.3:-17521410 | None:intergenic |
| GCACTCGACATGATGTCACA+AGG | 0.688978 | 1.3:+17520545 | MS.gene25167:CDS |
| ACTAAACACCTATCTTACAG+TGG | 0.705894 | 1.3:+17518717 | MS.gene25167:CDS |
| TTGTCCAATGCAGCATGATG+GGG | 0.706800 | 1.3:-17519220 | None:intergenic |
| AATTGCGCGATAACTCAGCG+TGG | 0.742122 | 1.3:+17519964 | MS.gene25167:CDS |
| AATCGGAAAGCTTTACCGCG+AGG | 0.742148 | 1.3:+17521879 | MS.gene25167:CDS |
| CTTCTGGTGGAATCACCATG+GGG | 0.748577 | 1.3:-17519380 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTATTTTTATATACAAT+AGG | - | chr1.3:17521532-17521551 | None:intergenic | 10.0% |
| !! | AAAAGGAAAATATATTGTTA+AGG | + | chr1.3:17520835-17520854 | MS.gene25167:CDS | 15.0% |
| !! | AAAGGAAAATATATTGTTAA+GGG | + | chr1.3:17520836-17520855 | MS.gene25167:CDS | 15.0% |
| !!! | TATATACATTTTTCTTAATC+TGG | - | chr1.3:17518904-17518923 | None:intergenic | 15.0% |
| !!! | TATTCAAATTTTATTCTTTG+TGG | - | chr1.3:17519510-17519529 | None:intergenic | 15.0% |
| !! | AAAATCTTTCAATGATAGAA+AGG | + | chr1.3:17522122-17522141 | MS.gene25167:CDS | 20.0% |
| !! | AAGGAAAATATATTGTTAAG+GGG | + | chr1.3:17520837-17520856 | MS.gene25167:CDS | 20.0% |
| !! | ATAAGAAAATCAAATTCTCA+AGG | + | chr1.3:17522213-17522232 | MS.gene25167:CDS | 20.0% |
| !! | TAAAAAATGGCATAGAAATT+GGG | + | chr1.3:17519904-17519923 | MS.gene25167:CDS | 20.0% |
| !!! | ATTTTGAACAGAATTTTGTA+TGG | - | chr1.3:17519417-17519436 | None:intergenic | 20.0% |
| !!! | TTTTAGTGAATGATTTTTTC+AGG | - | chr1.3:17521930-17521949 | None:intergenic | 20.0% |
| !!! | TTTTGTAACAAATGATTGAA+TGG | - | chr1.3:17521128-17521147 | None:intergenic | 20.0% |
| !!! | TTTTTGAAACAAATGTTGAA+TGG | - | chr1.3:17521020-17521039 | None:intergenic | 20.0% |
| ! | AAAAAATGGCATAGAAATTG+GGG | + | chr1.3:17519905-17519924 | MS.gene25167:CDS | 25.0% |
| ! | AAAACAATATCCAGATTTCA+TGG | + | chr1.3:17521819-17521838 | MS.gene25167:CDS | 25.0% |
| ! | AAAATATATTGTTAAGGGGA+AGG | + | chr1.3:17520841-17520860 | MS.gene25167:CDS | 25.0% |
| ! | AAAGAAATGGAACTAGATAT+AGG | - | chr1.3:17519639-17519658 | None:intergenic | 25.0% |
| ! | AACATATCATCCTAGTTATT+GGG | + | chr1.3:17522287-17522306 | MS.gene25167:intron | 25.0% |
| ! | AGGGAAAATATCATATGAAT+TGG | + | chr1.3:17520202-17520221 | MS.gene25167:CDS | 25.0% |
| ! | AGGTATGAGTAAAATAGTAT+AGG | + | chr1.3:17521085-17521104 | MS.gene25167:intron | 25.0% |
| ! | AGTTCCATTTCTTTAGATAA+TGG | + | chr1.3:17519645-17519664 | MS.gene25167:CDS | 25.0% |
| ! | ATATCTCTTCCAAGAAAAAA+TGG | + | chr1.3:17520776-17520795 | MS.gene25167:CDS | 25.0% |
| ! | CAATCCATTATCTAAAGAAA+TGG | - | chr1.3:17519652-17519671 | None:intergenic | 25.0% |
| ! | CTAAAAAATGGCATAGAAAT+TGG | + | chr1.3:17519903-17519922 | MS.gene25167:CDS | 25.0% |
| ! | GAAACAAGGACATTAAAATA+TGG | + | chr1.3:17520737-17520756 | MS.gene25167:CDS | 25.0% |
| ! | GATTATATTCATTATGCGTA+TGG | + | chr1.3:17521227-17521246 | MS.gene25167:intron | 25.0% |
| ! | TAACAAATGATTGAATGGAT+AGG | - | chr1.3:17521123-17521142 | None:intergenic | 25.0% |
| ! | TAACATATCATCCTAGTTAT+TGG | + | chr1.3:17522286-17522305 | MS.gene25167:intron | 25.0% |
| ! | TACAAAATCAACATAACTTG+AGG | + | chr1.3:17521141-17521160 | MS.gene25167:intron | 25.0% |
| ! | TACTCTTATTCAGATAAAGA+AGG | + | chr1.3:17522371-17522390 | MS.gene25167:intron | 25.0% |
| ! | TATATACAATAGGCAAAACT+AGG | - | chr1.3:17521522-17521541 | None:intergenic | 25.0% |
| ! | TATCAATCAAACAGCATAAT+CGG | + | chr1.3:17521862-17521881 | MS.gene25167:CDS | 25.0% |
| ! | TGTAAGACAATTCAAATACA+TGG | + | chr1.3:17518522-17518541 | MS.gene25167:CDS | 25.0% |
| ! | TTAAGGGAAATGATTATTTG+TGG | + | chr1.3:17520584-17520603 | MS.gene25167:CDS | 25.0% |
| ! | TTGAATGGATAAGAAATTTG+TGG | - | chr1.3:17521005-17521024 | None:intergenic | 25.0% |
| !! | TTTTCATGAAATCAAGAATG+TGG | + | chr1.3:17520043-17520062 | MS.gene25167:CDS | 25.0% |
| !!! | AATCTGGATATTGTTTTACA+TGG | - | chr1.3:17521816-17521835 | None:intergenic | 25.0% |
| !!! | ATTTTTCTGCTATTTGTCTA+AGG | + | chr1.3:17518923-17518942 | MS.gene25167:CDS | 25.0% |
| !!! | CATTTCTTTAGATAATGGAT+TGG | + | chr1.3:17519650-17519669 | MS.gene25167:CDS | 25.0% |
| !!! | TATCTTCTTTTTGTGTCATT+TGG | - | chr1.3:17521464-17521483 | None:intergenic | 25.0% |
| !!! | TGACACTAATCTTTTTCATA+TGG | + | chr1.3:17519479-17519498 | MS.gene25167:CDS | 25.0% |
| !!! | TTCTGAAATCAAGTACTTTA+AGG | + | chr1.3:17519158-17519177 | MS.gene25167:CDS | 25.0% |
| !!! | TTTTGAGAAGTACACAAAAA+TGG | + | chr1.3:17521993-17522012 | MS.gene25167:CDS | 25.0% |
| AAAATCAACATAACTTGAGG+TGG | + | chr1.3:17521144-17521163 | MS.gene25167:intron | 30.0% | |
| AACGATTACAGACATGTTAA+GGG | + | chr1.3:17520568-17520587 | MS.gene25167:CDS | 30.0% | |
| AAGGACATTAAAATATGGAG+AGG | + | chr1.3:17520742-17520761 | MS.gene25167:CDS | 30.0% | |
| AATGATAGAAAGGACAAAGA+AGG | + | chr1.3:17522132-17522151 | MS.gene25167:CDS | 30.0% | |
| ACATATCATCCTAGTTATTG+GGG | + | chr1.3:17522288-17522307 | MS.gene25167:intron | 30.0% | |
| ACATATTGTTCTCAACATCA+TGG | - | chr1.3:17520639-17520658 | None:intergenic | 30.0% | |
| AGAAAATCAAATTCTCAAGG+TGG | + | chr1.3:17522216-17522235 | MS.gene25167:CDS | 30.0% | |
| AGAAACAAAGGTTCATCAAA+GGG | + | chr1.3:17519869-17519888 | MS.gene25167:CDS | 30.0% | |
| AGAGAAAACTTAGTGTACTT+TGG | + | chr1.3:17518847-17518866 | MS.gene25167:CDS | 30.0% | |
| AGATATCTACTTTGTCTGTT+GGG | + | chr1.3:17521330-17521349 | MS.gene25167:CDS | 30.0% | |
| AGGTGATATAAGAAAATGGA+TGG | + | chr1.3:17520016-17520035 | MS.gene25167:CDS | 30.0% | |
| CAAGAAGTTGCTAAAAAATG+TGG | + | chr1.3:17520227-17520246 | MS.gene25167:CDS | 30.0% | |
| CAATACTAGATGTATTGTCA+TGG | + | chr1.3:17520384-17520403 | MS.gene25167:CDS | 30.0% | |
| CCTGATATAGAATTGAAAAG+AGG | + | chr1.3:17520149-17520168 | MS.gene25167:CDS | 30.0% | |
| CGTAACTGACAATTAAGATA+GGG | - | chr1.3:17519108-17519127 | None:intergenic | 30.0% | |
| GAAAGAAAAGGTTCATTTGT+CGG | - | chr1.3:17520617-17520636 | None:intergenic | 30.0% | |
| GAGAAAACTTAGTGTACTTT+GGG | + | chr1.3:17518848-17518867 | MS.gene25167:CDS | 30.0% | |
| GAGATTAAGCATCATAAAGA+TGG | + | chr1.3:17518624-17518643 | MS.gene25167:CDS | 30.0% | |
| GATCATGACATGAAGATTAA+TGG | + | chr1.3:17521970-17521989 | MS.gene25167:CDS | 30.0% | |
| GGTGATATAAGAAAATGGAT+GGG | + | chr1.3:17520017-17520036 | MS.gene25167:CDS | 30.0% | |
| GTACTGTCTACACTAAAAAA+TGG | + | chr1.3:17519891-17519910 | MS.gene25167:CDS | 30.0% | |
| TAAAGCAACTAACCTGAAAA+AGG | - | chr1.3:17519028-17519047 | None:intergenic | 30.0% | |
| TAAGGAATGAAGCTAGAAAT+TGG | + | chr1.3:17522178-17522197 | MS.gene25167:CDS | 30.0% | |
| TCAAGTGCTTCTGTTAAATT+TGG | + | chr1.3:17518876-17518895 | MS.gene25167:CDS | 30.0% | |
| TCTGCATTTCAAATCAGATA+TGG | + | chr1.3:17520272-17520291 | MS.gene25167:CDS | 30.0% | |
| TTAAGGATCGAGTCTTTAAA+AGG | + | chr1.3:17520468-17520487 | MS.gene25167:CDS | 30.0% | |
| TTTGATCTTGAGAAACAACT+TGG | + | chr1.3:17519333-17519352 | MS.gene25167:CDS | 30.0% | |
| ! | AAATTTGAATTTTGTCCCCA+TGG | + | chr1.3:17519365-17519384 | MS.gene25167:CDS | 30.0% |
| ! | AAGTACACTAAGTTTTCTCT+TGG | - | chr1.3:17518847-17518866 | None:intergenic | 30.0% |
| ! | AGGACCACAGAAATATATTT+TGG | - | chr1.3:17519706-17519725 | None:intergenic | 30.0% |
| ! | AGTCTTTAAAAGGAAGCAAA+GGG | + | chr1.3:17520478-17520497 | MS.gene25167:CDS | 30.0% |
| ! | ATCAAATACTGTTTCTCTGA+TGG | + | chr1.3:17520176-17520195 | MS.gene25167:CDS | 30.0% |
| ! | ATCATTTCCTAAGTTTTCCA+TGG | + | chr1.3:17522337-17522356 | MS.gene25167:intron | 30.0% |
| ! | ATGCTGTTTGATTGATAAGT+TGG | - | chr1.3:17521859-17521878 | None:intergenic | 30.0% |
| ! | ATGTCCTCTATTTCTTCTAA+GGG | + | chr1.3:17520800-17520819 | MS.gene25167:CDS | 30.0% |
| ! | CCTCTTTTCAATTCTATATC+AGG | - | chr1.3:17520152-17520171 | None:intergenic | 30.0% |
| ! | TATCTGATTTGAAATGCAGA+TGG | - | chr1.3:17520272-17520291 | None:intergenic | 30.0% |
| ! | TATGTCCTCTATTTCTTCTA+AGG | + | chr1.3:17520799-17520818 | MS.gene25167:CDS | 30.0% |
| ! | TCAAAGCTAGGATTTTTGTT+CGG | + | chr1.3:17520684-17520703 | MS.gene25167:CDS | 30.0% |
| ! | TCTAAAGTGGTATATTTGCA+GGG | - | chr1.3:17521193-17521212 | None:intergenic | 30.0% |
| ! | TGAAGCGGTAATGAAATTTT+TGG | + | chr1.3:17518566-17518585 | MS.gene25167:CDS | 30.0% |
| ! | TGTTTTACATGGAGATGTTT+TGG | - | chr1.3:17521805-17521824 | None:intergenic | 30.0% |
| ! | TTGACAAAAATTTGGAACCT+CGG | - | chr1.3:17519280-17519299 | None:intergenic | 30.0% |
| !! | AAGTTGTTTCTCAAGATCAA+AGG | - | chr1.3:17519334-17519353 | None:intergenic | 30.0% |
| !! | ACCACAGAAATATATTTTGG+AGG | - | chr1.3:17519703-17519722 | None:intergenic | 30.0% |
| !! | CCACAGAAATATATTTTGGA+GGG | - | chr1.3:17519702-17519721 | None:intergenic | 30.0% |
| !! | CGATAGTGTTGACAAAAATT+TGG | - | chr1.3:17519288-17519307 | None:intergenic | 30.0% |
| !! | GAAAGTTTAGTTGATGAGTT+AGG | - | chr1.3:17520326-17520345 | None:intergenic | 30.0% |
| !! | TACCAAGTTGATGAACTTAA+TGG | + | chr1.3:17522041-17522060 | MS.gene25167:CDS | 30.0% |
| !! | TATTGCTTTTCCATGAAATC+TGG | - | chr1.3:17521832-17521851 | None:intergenic | 30.0% |
| !! | TTCTAAAGTGGTATATTTGC+AGG | - | chr1.3:17521194-17521213 | None:intergenic | 30.0% |
| !! | TTCTTTTGTTGATGAGAACA+TGG | + | chr1.3:17519791-17519810 | MS.gene25167:CDS | 30.0% |
| AAGATCAATGTTAGGATGCT+TGG | + | chr1.3:17520712-17520731 | MS.gene25167:CDS | 35.0% | |
| AAGGATCTTTGCTTACAACA+TGG | + | chr1.3:17518788-17518807 | MS.gene25167:CDS | 35.0% | |
| AATGCCCTTAGAAGAAATAG+AGG | - | chr1.3:17520807-17520826 | None:intergenic | 35.0% | |
| ACAACAGAACGATTACTTGA+CGG | - | chr1.3:17520436-17520455 | None:intergenic | 35.0% | |
| ACAGAAGCAGAAATAATCAG+TGG | + | chr1.3:17522081-17522100 | MS.gene25167:CDS | 35.0% | |
| ACTAAACACCTATCTTACAG+TGG | + | chr1.3:17518717-17518736 | MS.gene25167:CDS | 35.0% | |
| AGGAAGCTTATGACAATCAT+TGG | + | chr1.3:17519178-17519197 | MS.gene25167:CDS | 35.0% | |
| ATCTTTGCTTACAACATGGA+TGG | + | chr1.3:17518792-17518811 | MS.gene25167:CDS | 35.0% | |
| ATGTTGTAAGCAAAGATCCT+TGG | - | chr1.3:17518789-17518808 | None:intergenic | 35.0% | |
| CCACAGGTGATATAAGAAAA+TGG | + | chr1.3:17520012-17520031 | MS.gene25167:CDS | 35.0% | |
| CTACAATGAGGGACTAAATA+AGG | + | chr1.3:17522314-17522333 | MS.gene25167:intron | 35.0% | |
| CTCAACATCATGGAAAGAAA+AGG | - | chr1.3:17520629-17520648 | None:intergenic | 35.0% | |
| CTCCATTAAGTTCATCAACT+TGG | - | chr1.3:17522046-17522065 | None:intergenic | 35.0% | |
| CTGAAAAAGGAGAAGTTTCT+TGG | - | chr1.3:17519015-17519034 | None:intergenic | 35.0% | |
| CTTCAGCAGAAACATTAGAT+GGG | - | chr1.3:17518551-17518570 | None:intergenic | 35.0% | |
| GAACATTTCCACTGTAAGAT+AGG | - | chr1.3:17518728-17518747 | None:intergenic | 35.0% | |
| GAACGATTACAGACATGTTA+AGG | + | chr1.3:17520567-17520586 | MS.gene25167:CDS | 35.0% | |
| GAGAAACAAAGGTTCATCAA+AGG | + | chr1.3:17519868-17519887 | MS.gene25167:CDS | 35.0% | |
| GAGATATCTACTTTGTCTGT+TGG | + | chr1.3:17521329-17521348 | MS.gene25167:CDS | 35.0% | |
| GCATTTCAAATCAGATATGG+TGG | + | chr1.3:17520275-17520294 | MS.gene25167:CDS | 35.0% | |
| GCGTAACTGACAATTAAGAT+AGG | - | chr1.3:17519109-17519128 | None:intergenic | 35.0% | |
| GCTATGACATATCACTACTT+TGG | + | chr1.3:17521593-17521612 | MS.gene25167:intron | 35.0% | |
| TACATTGTCAAAGACACCTT+AGG | + | chr1.3:17521646-17521665 | MS.gene25167:CDS | 35.0% | |
| TCACTTCCTGAACATTCATT+AGG | - | chr1.3:17521301-17521320 | None:intergenic | 35.0% | |
| TGATCATGATGTCACATTAC+AGG | + | chr1.3:17521420-17521439 | MS.gene25167:CDS | 35.0% | |
| TGCTAAAAAATGTGGTTGCA+AGG | + | chr1.3:17520235-17520254 | MS.gene25167:CDS | 35.0% | |
| TGTACCTTCCTTACATCATA+TGG | + | chr1.3:17520925-17520944 | MS.gene25167:CDS | 35.0% | |
| TTAGATGGTGAATGATCCAT+TGG | - | chr1.3:17521388-17521407 | None:intergenic | 35.0% | |
| TTAGTGTCAATTGCTTGCAA+AGG | - | chr1.3:17519468-17519487 | None:intergenic | 35.0% | |
| TTGCAGTTGAGAATATAGCA+AGG | + | chr1.3:17521065-17521084 | MS.gene25167:intron | 35.0% | |
| TTTCTCGTGTCTGAATTTGT+TGG | + | chr1.3:17521571-17521590 | MS.gene25167:intron | 35.0% | |
| ! | ACTGTTTCTCTGATGGAATA+GGG | + | chr1.3:17520183-17520202 | MS.gene25167:CDS | 35.0% |
| ! | AGGTTAGTTGCTTTAGTTTC+AGG | + | chr1.3:17519033-17519052 | MS.gene25167:intron | 35.0% |
| ! | ATCTAATGTTTCTGCTGAAG+CGG | + | chr1.3:17518551-17518570 | MS.gene25167:CDS | 35.0% |
| ! | ATGAACTTAATGGAGCACTA+TGG | + | chr1.3:17522051-17522070 | MS.gene25167:CDS | 35.0% |
| ! | CAAGAAACTTCTCCTTTTTC+AGG | + | chr1.3:17519013-17519032 | MS.gene25167:CDS | 35.0% |
| ! | CCATTTTCTTATATCACCTG+TGG | - | chr1.3:17520015-17520034 | None:intergenic | 35.0% |
| ! | CCCTCCAAAATATATTTCTG+TGG | + | chr1.3:17519699-17519718 | MS.gene25167:CDS | 35.0% |
| ! | GAGTCTTTAAAAGGAAGCAA+AGG | + | chr1.3:17520477-17520496 | MS.gene25167:CDS | 35.0% |
| ! | GATGGTATTGGAATACACTT+TGG | + | chr1.3:17518810-17518829 | MS.gene25167:CDS | 35.0% |
| ! | GGTTAGTTGCTTTAGTTTCA+GGG | + | chr1.3:17519034-17519053 | MS.gene25167:intron | 35.0% |
| ! | TACTGTTTCTCTGATGGAAT+AGG | + | chr1.3:17520182-17520201 | MS.gene25167:CDS | 35.0% |
| ! | TCGCTATCAATCTTCTAAAG+TGG | - | chr1.3:17521206-17521225 | None:intergenic | 35.0% |
| ! | TCTATTTCTTCTAAGGGCAT+TGG | + | chr1.3:17520806-17520825 | MS.gene25167:CDS | 35.0% |
| !! | ATCAGATATGGTGGATACAA+AGG | + | chr1.3:17520284-17520303 | MS.gene25167:CDS | 35.0% |
| !!! | AAATTTTTGGAGCAACATGC+TGG | + | chr1.3:17518579-17518598 | MS.gene25167:CDS | 35.0% |
| !!! | GAGGACATACCATTTTTTCT+TGG | - | chr1.3:17520788-17520807 | None:intergenic | 35.0% |
| !!! | TCAACATGCATGGTTTTAGA+TGG | - | chr1.3:17521403-17521422 | None:intergenic | 35.0% |
| AAGAATCCATGTCTTCATCC+AGG | + | chr1.3:17520875-17520894 | MS.gene25167:CDS | 40.0% | |
| AAGAATTGCAGCTCAAAGCT+AGG | + | chr1.3:17520672-17520691 | MS.gene25167:CDS | 40.0% | |
| ACAGTCCACCATATGATGTA+AGG | - | chr1.3:17520936-17520955 | None:intergenic | 40.0% | |
| ACCTTCCTTACATCATATGG+TGG | + | chr1.3:17520928-17520947 | MS.gene25167:CDS | 40.0% | |
| ACTTGACGGTTAAGAAAGCA+CGG | - | chr1.3:17520422-17520441 | None:intergenic | 40.0% | |
| AGAAACGCGAAGGAAGTTAT+CGG | - | chr1.3:17519775-17519794 | None:intergenic | 40.0% | |
| AGAGGAACCTGACAACAAAT+CGG | - | chr1.3:17519832-17519851 | None:intergenic | 40.0% | |
| AGATAAAGAAGGACAAAGCC+AGG | + | chr1.3:17522382-17522401 | MS.gene25167:intron | 40.0% | |
| ATCATGCAGTGATGTCACTA+AGG | + | chr1.3:17522160-17522179 | MS.gene25167:CDS | 40.0% | |
| ATCATGTCGAGTGCATTGAA+TGG | - | chr1.3:17520539-17520558 | None:intergenic | 40.0% | |
| ATGTGGCAAAATATGCAGCA+AGG | + | chr1.3:17520060-17520079 | MS.gene25167:CDS | 40.0% | |
| ATTGTCCAATGCAGCATGAT+GGG | - | chr1.3:17519224-17519243 | None:intergenic | 40.0% | |
| CATATCACTACTTTGGCTAC+AGG | + | chr1.3:17521600-17521619 | MS.gene25167:intron | 40.0% | |
| CATCAACAAAAGAAACGCGA+AGG | - | chr1.3:17519785-17519804 | None:intergenic | 40.0% | |
| CCACATCCTAATGAATGTTC+AGG | + | chr1.3:17521292-17521311 | MS.gene25167:CDS | 40.0% | |
| CCTGAACATTCATTAGGATG+TGG | - | chr1.3:17521295-17521314 | None:intergenic | 40.0% | |
| CGATTCGAAAGATTCACTTC+AGG | - | chr1.3:17519726-17519745 | None:intergenic | 40.0% | |
| CGGAAAGGAAGATCAATGTT+AGG | + | chr1.3:17520704-17520723 | MS.gene25167:CDS | 40.0% | |
| CTATGATCCTGTTCAATGGT+TGG | + | chr1.3:17519575-17519594 | MS.gene25167:CDS | 40.0% | |
| CTCAAAATCCTTACATCTCC+TGG | - | chr1.3:17520896-17520915 | None:intergenic | 40.0% | |
| CTGACAACAAATCGGATGAA+CGG | - | chr1.3:17519824-17519843 | None:intergenic | 40.0% | |
| CTTATGCTATTGCTTCTGCT+TGG | + | chr1.3:17522256-17522275 | MS.gene25167:CDS | 40.0% | |
| GAACACACCATGGAAAACTT+AGG | - | chr1.3:17522347-17522366 | None:intergenic | 40.0% | |
| GACATCATGATCAACATGCA+TGG | - | chr1.3:17521413-17521432 | None:intergenic | 40.0% | |
| GCTTACAACATGGATGGTAT+TGG | + | chr1.3:17518798-17518817 | MS.gene25167:CDS | 40.0% | |
| GCTTCAGCAGAAACATTAGA+TGG | - | chr1.3:17518552-17518571 | None:intergenic | 40.0% | |
| GTTGCTATGATCCTGTTCAA+TGG | + | chr1.3:17519571-17519590 | MS.gene25167:CDS | 40.0% | |
| TAGGATGCTTGGATGAAACA+AGG | + | chr1.3:17520723-17520742 | MS.gene25167:CDS | 40.0% | |
| TATTGGGGATGCTACAATGA+GGG | + | chr1.3:17522303-17522322 | MS.gene25167:intron | 40.0% | |
| TCAAGAGAAACAGTGAGTGT+TGG | + | chr1.3:17520104-17520123 | MS.gene25167:CDS | 40.0% | |
| TCCACCATATGATGTAAGGA+AGG | - | chr1.3:17520932-17520951 | None:intergenic | 40.0% | |
| TCGCAAGCTCTATACATGAA+GGG | - | chr1.3:17521729-17521748 | None:intergenic | 40.0% | |
| TCTCTACAGCAAGAACAGTT+TGG | - | chr1.3:17518608-17518627 | None:intergenic | 40.0% | |
| TGAATGTTCAGGAAGTGACT+TGG | + | chr1.3:17521303-17521322 | MS.gene25167:CDS | 40.0% | |
| TGCTGATAAGGAACCTGAAA+AGG | + | chr1.3:17521696-17521715 | MS.gene25167:CDS | 40.0% | |
| TGCTGTTGCAATAACTCCTA+AGG | - | chr1.3:17521665-17521684 | None:intergenic | 40.0% | |
| TGGATGAAGACATGGATTCT+TGG | - | chr1.3:17520876-17520895 | None:intergenic | 40.0% | |
| TGTCAATTGCTTGCAAAGGA+AGG | - | chr1.3:17519464-17519483 | None:intergenic | 40.0% | |
| TGTTTCTCCAACCATTGAAC+AGG | - | chr1.3:17519585-17519604 | None:intergenic | 40.0% | |
| TTATTGGGGATGCTACAATG+AGG | + | chr1.3:17522302-17522321 | MS.gene25167:intron | 40.0% | |
| TTCGCAAGCTCTATACATGA+AGG | - | chr1.3:17521730-17521749 | None:intergenic | 40.0% | |
| TTGTAGCATCCCCAATAACT+AGG | - | chr1.3:17522300-17522319 | None:intergenic | 40.0% | |
| ! | ACACACTGTGTTTGCTGATA+AGG | + | chr1.3:17521684-17521703 | MS.gene25167:CDS | 40.0% |
| ! | AGAGTATCATGAACACACCA+TGG | - | chr1.3:17522357-17522376 | None:intergenic | 40.0% |
| ! | CTGACATTTTGTCAAAGCCA+AGG | + | chr1.3:17518769-17518788 | MS.gene25167:CDS | 40.0% |
| ! | GCTAGGATTTTTGTTCGGAA+AGG | + | chr1.3:17520689-17520708 | MS.gene25167:CDS | 40.0% |
| ! | TATGGCAAGTTGAATCCTTC+TGG | - | chr1.3:17519399-17519418 | None:intergenic | 40.0% |
| !! | AAGGGCATTGGAGCAAAAAA+AGG | + | chr1.3:17520818-17520837 | MS.gene25167:CDS | 40.0% |
| !! | ACATCTTTTTCGTAGATCCG+AGG | - | chr1.3:17519138-17519157 | None:intergenic | 40.0% |
| !! | CTTGCACATGCTATTTCTCA+AGG | - | chr1.3:17520348-17520367 | None:intergenic | 40.0% |
| !! | CTTGGCTTTGACAAAATGTC+AGG | - | chr1.3:17518771-17518790 | None:intergenic | 40.0% |
| !! | TTTGGAACCTCGGTATTTTG+TGG | - | chr1.3:17519270-17519289 | None:intergenic | 40.0% |
| !!! | AGATGTTTTGGTACTTCAGC+CGG | - | chr1.3:17521793-17521812 | None:intergenic | 40.0% |
| !!! | GTGTTGTTTTCCCACAGAAA+GGG | + | chr1.3:17520954-17520973 | MS.gene25167:CDS | 40.0% |
| !!! | TGTGTTGTTTTCCCACAGAA+AGG | + | chr1.3:17520953-17520972 | MS.gene25167:CDS | 40.0% |
| ACATCTCCTGGATGAAGACA+TGG | - | chr1.3:17520884-17520903 | None:intergenic | 45.0% | |
| ACTTTGGCTACAGGATGTAG+AGG | + | chr1.3:17521609-17521628 | MS.gene25167:intron | 45.0% | |
| AGACGTGGACAGAGAAACAA+AGG | + | chr1.3:17519857-17519876 | MS.gene25167:CDS | 45.0% | |
| AGGTTCCTCTTGTATAGACG+TGG | + | chr1.3:17519842-17519861 | MS.gene25167:CDS | 45.0% | |
| ATCGTTCTGTTGTCCACACT+CGG | + | chr1.3:17520443-17520462 | MS.gene25167:CDS | 45.0% | |
| CTGCTCTTATTCCTCCTCAT+CGG | + | chr1.3:17521356-17521375 | MS.gene25167:CDS | 45.0% | |
| CTTACCTTCTCCCTTTCTGT+GGG | - | chr1.3:17520967-17520986 | None:intergenic | 45.0% | |
| GATGAGGAGGAATAAGAGCA+GGG | - | chr1.3:17521357-17521376 | None:intergenic | 45.0% | |
| GATTGTCCAATGCAGCATGA+TGG | - | chr1.3:17519225-17519244 | None:intergenic | 45.0% | |
| GCAAAATATGCAGCAAGGCT+TGG | + | chr1.3:17520065-17520084 | MS.gene25167:CDS | 45.0% | |
| GTCTTCATCCAGGAGATGTA+AGG | + | chr1.3:17520885-17520904 | MS.gene25167:CDS | 45.0% | |
| TCCTCATCGGGAAAATCCAA+TGG | + | chr1.3:17521369-17521388 | MS.gene25167:CDS | 45.0% | |
| TCTGTCCACGTCTATACAAG+AGG | - | chr1.3:17519850-17519869 | None:intergenic | 45.0% | |
| TCTTACCTTCTCCCTTTCTG+TGG | - | chr1.3:17520968-17520987 | None:intergenic | 45.0% | |
| TGACCTTCCACAAAATACCG+AGG | + | chr1.3:17519260-17519279 | MS.gene25167:CDS | 45.0% | |
| TGCTCTTATTCCTCCTCATC+GGG | + | chr1.3:17521357-17521376 | MS.gene25167:CDS | 45.0% | |
| TGTTAAGGGGAAGGTAGTTG+TGG | + | chr1.3:17520850-17520869 | MS.gene25167:CDS | 45.0% | |
| TTGTCCAATGCAGCATGATG+GGG | - | chr1.3:17519223-17519242 | None:intergenic | 45.0% | |
| ! | AGGAAGTTATCGGTGTCTTC+AGG | - | chr1.3:17519765-17519784 | None:intergenic | 45.0% |
| ! | ATTGGATTTTCCCGATGAGG+AGG | - | chr1.3:17521370-17521389 | None:intergenic | 45.0% |
| ! | GAACCTCGGTATTTTGTGGA+AGG | - | chr1.3:17519266-17519285 | None:intergenic | 45.0% |
| ! | GCCGGATTTTGCGAAATCAA+CGG | - | chr1.3:17521767-17521786 | None:intergenic | 45.0% |
| ! | TCCATTGGATTTTCCCGATG+AGG | - | chr1.3:17521373-17521392 | None:intergenic | 45.0% |
| ! | TGTTCAGGAAGTGACTTGGA+TGG | + | chr1.3:17521307-17521326 | MS.gene25167:CDS | 45.0% |
| ! | TTTTCCCACAGAAAGGGAGA+AGG | + | chr1.3:17520960-17520979 | MS.gene25167:CDS | 45.0% |
| !! | CGTTCATCCGATTTGTTGTC+AGG | + | chr1.3:17519822-17519841 | MS.gene25167:CDS | 45.0% |
| !! | GCCGTTGATTTCGCAAAATC+CGG | + | chr1.3:17521763-17521782 | MS.gene25167:CDS | 45.0% |
| AATCGGAAAGCTTTACCGCG+AGG | + | chr1.3:17521879-17521898 | MS.gene25167:CDS | 50.0% | |
| AATTGCGCGATAACTCAGCG+TGG | + | chr1.3:17519964-17519983 | MS.gene25167:CDS | 50.0% | |
| CCTTCTGGTGGAATCACCAT+GGG | - | chr1.3:17519384-17519403 | None:intergenic | 50.0% | |
| CGATGAGGAGGAATAAGAGC+AGG | - | chr1.3:17521358-17521377 | None:intergenic | 50.0% | |
| CTTCTGGTGGAATCACCATG+GGG | - | chr1.3:17519383-17519402 | None:intergenic | 50.0% | |
| GCACTCGACATGATGTCACA+AGG | + | chr1.3:17520545-17520564 | MS.gene25167:CDS | 50.0% | |
| GTGCAACATTCTTCACCTCG+CGG | - | chr1.3:17521897-17521916 | None:intergenic | 50.0% | |
| TCCTTCTGGTGGAATCACCA+TGG | - | chr1.3:17519385-17519404 | None:intergenic | 50.0% | |
| TCGATCCTTAACACCGAGTG+TGG | - | chr1.3:17520459-17520478 | None:intergenic | 50.0% | |
| TGGATGTTTGCACCGAGAAC+TGG | + | chr1.3:17519984-17520003 | MS.gene25167:CDS | 50.0% | |
| TTCACCCCATCATGCTGCAT+TGG | + | chr1.3:17519216-17519235 | MS.gene25167:CDS | 50.0% | |
| ! | CCTGTGGTTAGTCCAGTTCT+CGG | - | chr1.3:17519999-17520018 | None:intergenic | 50.0% |
| ! | GAAGGGCTCATTGCCTTTTC+AGG | - | chr1.3:17521712-17521731 | None:intergenic | 50.0% |
| ! | GGCAAGTTGAATCCTTCTGG+TGG | - | chr1.3:17519396-17519415 | None:intergenic | 50.0% |
| !! | GTTGTCCACACTCGGTGTTA+AGG | + | chr1.3:17520451-17520470 | MS.gene25167:CDS | 50.0% |
| CCCATGGTGATTCCACCAGA+AGG | + | chr1.3:17519381-17519400 | MS.gene25167:CDS | 55.0% | |
| CCGAGAACTGGACTAACCAC+AGG | + | chr1.3:17519996-17520015 | MS.gene25167:CDS | 55.0% | |
| GTCAGTTACGCAGTGCTCCT+CGG | + | chr1.3:17519118-17519137 | MS.gene25167:intron | 55.0% | |
| TTTCGCAAAATCCGGCGTGC+CGG | + | chr1.3:17521771-17521790 | MS.gene25167:CDS | 55.0% | |
| TGGTACTTCAGCCGGCACGC+CGG | - | chr1.3:17521785-17521804 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 17518519 | 17522418 | 17518519 | ID=MS.gene25167 |
| chr1.3 | mRNA | 17518519 | 17522418 | 17518519 | ID=MS.gene25167.t1;Parent=MS.gene25167 |
| chr1.3 | exon | 17518519 | 17519034 | 17518519 | ID=MS.gene25167.t1.exon1;Parent=MS.gene25167.t1 |
| chr1.3 | CDS | 17518519 | 17519034 | 17518519 | ID=cds.MS.gene25167.t1;Parent=MS.gene25167.t1 |
| chr1.3 | exon | 17519123 | 17520981 | 17519123 | ID=MS.gene25167.t1.exon2;Parent=MS.gene25167.t1 |
| chr1.3 | CDS | 17519123 | 17520981 | 17519123 | ID=cds.MS.gene25167.t1;Parent=MS.gene25167.t1 |
| chr1.3 | exon | 17521291 | 17521441 | 17521291 | ID=MS.gene25167.t1.exon3;Parent=MS.gene25167.t1 |
| chr1.3 | CDS | 17521291 | 17521441 | 17521291 | ID=cds.MS.gene25167.t1;Parent=MS.gene25167.t1 |
| chr1.3 | exon | 17521622 | 17522300 | 17521622 | ID=MS.gene25167.t1.exon4;Parent=MS.gene25167.t1 |
| chr1.3 | CDS | 17521622 | 17522300 | 17521622 | ID=cds.MS.gene25167.t1;Parent=MS.gene25167.t1 |
| chr1.3 | exon | 17522384 | 17522418 | 17522384 | ID=MS.gene25167.t1.exon5;Parent=MS.gene25167.t1 |
| chr1.3 | CDS | 17522384 | 17522418 | 17522384 | ID=cds.MS.gene25167.t1;Parent=MS.gene25167.t1 |
| Gene Sequence |
| Protein sequence |
