AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25569

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25569.t1 MTR_8g465160 89.796 98 10 0 104 201 735 832 5.15e-55 187
MS.gene25569.t1 MTR_8g465160 66.667 108 31 5 1 104 35 141 1.58e-28 112
MS.gene25569.t1 MTR_8g465150 89.796 98 10 0 104 201 733 830 7.22e-54 184
MS.gene25569.t1 MTR_8g465150 62.385 109 36 2 1 104 35 143 2.77e-27 108
MS.gene25569.t1 MTR_8g061110 81.633 98 18 0 104 201 623 720 2.16e-49 171
MS.gene25569.t1 MTR_7g056640 38.542 96 59 0 103 198 733 828 3.30e-18 82.4
MS.gene25569.t1 MTR_7g056620 35.789 95 61 0 104 198 52 146 1.15e-17 76.6
MS.gene25569.t1 MTR_1g105650 41.935 93 54 0 81 173 548 640 3.26e-17 79.7
MS.gene25569.t1 MTR_4g081650 39.785 93 56 0 81 173 693 785 4.46e-17 79.3
MS.gene25569.t1 MTR_4g091860 40.351 114 66 2 82 195 715 826 1.09e-16 78.2
MS.gene25569.t1 MTR_1g052880 44.792 96 49 3 104 198 924 1016 1.40e-16 77.8
MS.gene25569.t1 MTR_7g056667 47.887 71 37 0 103 173 738 808 1.46e-16 77.8
MS.gene25569.t1 MTR_2g011160 50.000 70 35 0 104 173 749 818 3.15e-16 76.6
MS.gene25569.t1 MTR_7g056623 39.130 92 56 0 104 195 692 783 6.52e-16 75.9
MS.gene25569.t1 MTR_7g056590 37.234 94 59 0 105 198 581 674 6.63e-16 75.9
MS.gene25569.t1 MTR_6g012810 35.897 117 66 1 57 173 780 887 6.72e-16 75.9
MS.gene25569.t1 MTR_3g011910 46.667 75 32 2 103 173 543 613 6.93e-16 75.9
MS.gene25569.t1 MTR_3g415610 47.143 70 37 0 104 173 440 509 1.04e-15 75.1
MS.gene25569.t1 MTR_2g011170 43.158 95 51 2 104 198 718 809 1.33e-15 75.1
MS.gene25569.t1 MTR_8g465590 47.143 70 36 1 104 173 56 124 1.55e-15 70.9
MS.gene25569.t1 MTR_8g041660 43.182 88 50 0 105 192 554 641 1.64e-15 74.7
MS.gene25569.t1 MTR_4g081665 45.714 70 38 0 104 173 714 783 1.66e-15 74.7
MS.gene25569.t1 MTR_5g055070 46.392 97 51 1 104 200 716 811 1.89e-15 74.7
MS.gene25569.t1 MTR_5g005520 41.509 106 48 4 104 204 570 666 2.05e-15 74.3
MS.gene25569.t1 MTR_5g055070 46.392 97 51 1 104 200 674 769 2.12e-15 74.3
MS.gene25569.t1 MTR_2g011180 38.235 102 52 2 104 198 748 845 3.79e-15 73.6
MS.gene25569.t1 MTR_3g011960 40.000 95 51 1 104 198 160 248 4.09e-15 72.0
MS.gene25569.t1 MTR_8g041650 48.571 70 35 1 105 173 554 623 6.40e-15 72.8
MS.gene25569.t1 MTR_7g056510 40.404 99 53 2 103 199 724 818 6.80e-15 72.8
MS.gene25569.t1 MTR_8g041710 46.575 73 39 0 105 177 552 624 8.84e-15 72.4
MS.gene25569.t1 MTR_8g041890 47.826 69 36 0 105 173 561 629 1.14e-14 72.4
MS.gene25569.t1 MTR_4g081685 38.384 99 60 1 104 201 722 820 1.14e-14 72.4
MS.gene25569.t1 MTR_4g081750 46.377 69 37 0 104 172 1061 1129 1.19e-14 72.4
MS.gene25569.t1 MTR_1g105585 37.255 102 62 1 99 198 545 646 1.26e-14 72.0
MS.gene25569.t1 MTR_1g105595 37.383 107 63 3 99 202 512 617 1.28e-14 72.0
MS.gene25569.t1 MTR_1g105595 37.383 107 63 3 99 202 559 664 1.36e-14 72.0
MS.gene25569.t1 MTR_8g041880 36.893 103 56 1 71 173 535 628 1.44e-14 72.0
MS.gene25569.t1 MTR_7g056647 38.947 95 57 1 104 198 749 842 1.45e-14 72.0
MS.gene25569.t1 MTR_2g089290 42.857 70 40 0 104 173 891 960 1.49e-14 72.0
MS.gene25569.t1 MTR_0148s0080 48.571 70 36 0 104 173 928 997 1.66e-14 72.0
MS.gene25569.t1 MTR_8g041820 46.377 69 37 0 105 173 153 221 1.72e-14 70.1
MS.gene25569.t1 MTR_3g011930 40.000 95 51 1 104 198 413 501 1.78e-14 71.6
MS.gene25569.t1 MTR_7g056647 38.947 95 57 1 104 198 587 680 1.83e-14 71.6
MS.gene25569.t1 MTR_4g091670 45.714 70 38 0 104 173 750 819 2.08e-14 71.6
MS.gene25569.t1 MTR_7g056650 46.479 71 38 0 103 173 572 642 2.54e-14 71.2
MS.gene25569.t1 MTR_8g442270 36.559 93 59 0 81 173 673 765 2.71e-14 71.2
MS.gene25569.t1 MTR_8g052350 43.421 76 43 0 104 179 43 118 2.92e-14 67.4
MS.gene25569.t1 MTR_7g056450 35.484 93 60 0 81 173 703 795 3.53e-14 70.9
MS.gene25569.t1 MTR_8g465410 45.714 70 37 1 104 173 724 792 3.66e-14 70.9
MS.gene25569.t1 MTR_4g117020 34.375 96 61 2 104 199 664 757 4.33e-14 70.5
MS.gene25569.t1 MTR_5g005530 43.434 99 50 3 104 200 545 639 4.57e-14 70.5
MS.gene25569.t1 MTR_4g081675 45.714 70 38 0 104 173 721 790 6.24e-14 70.1
MS.gene25569.t1 MTR_2g011150 44.000 75 41 1 104 177 678 752 7.55e-14 69.7
MS.gene25569.t1 MTR_8g041910 35.922 103 57 1 71 173 544 637 9.15e-14 69.7
MS.gene25569.t1 MTR_8g051840 35.714 98 62 1 82 179 28 124 1.20e-13 65.9
MS.gene25569.t1 MTR_8g465570 41.860 86 49 1 104 189 685 769 1.21e-13 69.3
MS.gene25569.t1 MTR_8g052570 43.421 76 43 0 104 179 280 355 1.23e-13 68.9
MS.gene25569.t1 MTR_8g052517 43.421 76 43 0 104 179 280 355 1.23e-13 68.9
MS.gene25569.t1 MTR_8g052080 44.737 76 42 0 104 179 703 778 1.79e-13 68.9
MS.gene25569.t1 MTR_7g056680 45.070 71 39 0 103 173 717 787 2.12e-13 68.6
MS.gene25569.t1 MTR_7g056680 45.070 71 39 0 103 173 718 788 2.12e-13 68.6
MS.gene25569.t1 MTR_7g056680 45.070 71 39 0 103 173 713 783 2.14e-13 68.6
MS.gene25569.t1 MTR_7g056680 45.070 71 39 0 103 173 722 792 2.23e-13 68.6
MS.gene25569.t1 MTR_8g052490 43.421 76 43 0 104 179 281 356 2.23e-13 68.2
MS.gene25569.t1 MTR_8g052513 42.105 76 44 0 104 179 680 755 2.29e-13 68.6
MS.gene25569.t1 MTR_7g056680 45.070 71 39 0 103 173 557 627 2.34e-13 68.6
MS.gene25569.t1 MTR_2g011190 38.372 86 50 1 92 177 730 812 2.35e-13 68.6
MS.gene25569.t1 MTR_8g052050 44.737 76 42 0 104 179 702 777 2.35e-13 68.6
MS.gene25569.t1 MTR_4g081655 44.286 70 38 1 104 173 722 790 2.40e-13 68.6
MS.gene25569.t1 MTR_8g052290 43.421 76 43 0 104 179 307 382 2.89e-13 67.8
MS.gene25569.t1 MTR_8g052170 42.105 76 44 0 104 179 254 329 3.00e-13 67.8
MS.gene25569.t1 MTR_8g051600 42.105 76 44 0 104 179 691 766 3.03e-13 68.2
MS.gene25569.t1 MTR_2g011340 43.478 69 39 0 105 173 739 807 3.09e-13 68.2
MS.gene25569.t1 MTR_8g013580 36.792 106 64 1 81 183 705 810 3.11e-13 68.2
MS.gene25569.t1 MTR_5g005450 39.080 87 48 2 89 172 526 610 3.28e-13 67.8
MS.gene25569.t1 MTR_2g011280 43.478 69 39 0 105 173 743 811 3.43e-13 68.2
MS.gene25569.t1 MTR_8g051540 36.559 93 59 0 81 173 675 767 3.46e-13 67.8
MS.gene25569.t1 MTR_8g028065 33.684 95 63 0 104 198 788 882 3.57e-13 67.8
MS.gene25569.t1 MTR_2g011270 43.478 69 39 0 105 173 723 791 3.69e-13 67.8
MS.gene25569.t1 MTR_1g105640 41.429 70 41 0 104 173 553 622 4.09e-13 67.8
MS.gene25569.t1 MTR_1g105640 41.429 70 41 0 104 173 553 622 4.18e-13 67.8
MS.gene25569.t1 MTR_1g105640 41.429 70 41 0 104 173 553 622 4.25e-13 67.8
MS.gene25569.t1 MTR_8g465470 41.860 86 49 1 104 189 755 839 4.44e-13 67.8
MS.gene25569.t1 MTR_8g052190 43.421 76 43 0 104 179 695 770 4.56e-13 67.8
MS.gene25569.t1 MTR_8g052190 43.421 76 43 0 104 179 694 769 4.60e-13 67.8
MS.gene25569.t1 MTR_8g041690 46.377 69 37 0 105 173 561 629 4.68e-13 67.4
MS.gene25569.t1 MTR_7g056430 43.662 71 40 0 103 173 1056 1126 5.63e-13 67.4
MS.gene25569.t1 MTR_4g091570 40.541 74 44 0 104 177 971 1044 7.06e-13 67.0
MS.gene25569.t1 MTR_8g442340 32.258 124 77 1 81 204 616 732 7.24e-13 67.0
MS.gene25569.t1 MTR_3g079850 41.333 75 43 1 104 178 558 631 7.29e-13 67.0
MS.gene25569.t1 MTR_8g442370 32.258 124 77 1 81 204 663 779 7.69e-13 67.0
MS.gene25569.t1 MTR_2g081520 37.168 113 57 5 82 191 698 799 8.02e-13 67.0
MS.gene25569.t1 MTR_2g011240 34.409 93 61 0 81 173 697 789 8.25e-13 67.0
MS.gene25569.t1 MTR_8g013610 36.559 93 59 0 81 173 701 793 8.27e-13 67.0
MS.gene25569.t1 MTR_8g052200 42.105 76 44 0 104 179 680 755 8.50e-13 66.6
MS.gene25569.t1 MTR_2g081520 37.168 113 57 5 82 191 702 803 8.82e-13 66.6
MS.gene25569.t1 MTR_5g067250 45.946 74 39 1 104 177 719 791 9.78e-13 66.6
MS.gene25569.t1 MTR_2g081470 43.590 78 41 2 98 173 711 787 1.22e-12 66.2
MS.gene25569.t1 MTR_8g013600 41.667 84 46 1 103 183 699 782 1.39e-12 66.2
MS.gene25569.t1 MTR_8g052060 42.105 76 44 0 104 179 659 734 1.74e-12 65.9
MS.gene25569.t1 MTR_3g019580 45.333 75 39 2 104 177 721 794 1.94e-12 65.9
MS.gene25569.t1 MTR_2g081500 43.038 79 40 3 98 173 713 789 2.11e-12 65.9
MS.gene25569.t1 MTR_3g019580 45.333 75 39 2 104 177 689 762 2.35e-12 65.5
MS.gene25569.t1 MTR_3g020330 45.455 77 36 3 104 177 673 746 2.50e-12 65.5
MS.gene25569.t1 MTR_1g105655 36.559 93 52 3 99 190 556 642 2.66e-12 65.5
MS.gene25569.t1 MTR_8g465990 41.429 70 40 1 104 173 724 792 3.00e-12 65.1
MS.gene25569.t1 MTR_2g089360 42.718 103 55 3 3 103 34 134 3.33e-12 65.1
MS.gene25569.t1 MTR_2g011230 33.333 93 62 0 81 173 710 802 3.43e-12 65.1
MS.gene25569.t1 MTR_8g465990 41.429 70 40 1 104 173 686 754 3.49e-12 65.1
MS.gene25569.t1 MTR_4g117040 34.615 104 57 3 71 173 640 733 3.71e-12 65.1
MS.gene25569.t1 MTR_3g019490 45.070 71 36 3 104 173 712 780 3.86e-12 65.1
MS.gene25569.t1 MTR_3g019500 42.391 92 47 3 104 190 724 814 4.18e-12 64.7
MS.gene25569.t1 MTR_4g081640 42.857 70 39 1 104 173 685 753 4.64e-12 64.7
MS.gene25569.t1 MTR_4g091820 41.429 70 40 1 104 173 750 818 4.79e-12 64.7
MS.gene25569.t1 MTR_3g020280 47.222 72 33 4 104 173 721 789 4.81e-12 64.7
MS.gene25569.t1 MTR_0341s0020 35.294 102 57 3 103 200 562 658 5.01e-12 64.7
MS.gene25569.t1 MTR_8g052120 40.789 76 45 0 104 179 673 748 5.04e-12 64.7
MS.gene25569.t1 MTR_4g091690 41.429 70 40 1 104 173 758 826 5.29e-12 64.7
MS.gene25569.t1 MTR_8g013560 42.254 71 41 0 103 173 725 795 5.77e-12 64.3
MS.gene25569.t1 MTR_8g442300 33.333 93 62 0 81 173 58 150 5.99e-12 62.0
MS.gene25569.t1 MTR_8g013620 43.662 71 40 0 103 173 722 792 5.99e-12 64.3
MS.gene25569.t1 MTR_8g013620 43.662 71 40 0 103 173 682 752 7.11e-12 63.9
MS.gene25569.t1 MTR_8g041670 43.478 69 39 0 105 173 356 424 7.86e-12 63.9
MS.gene25569.t1 MTR_1g105630 33.654 104 59 2 71 173 106 200 7.94e-12 62.8
MS.gene25569.t1 MTR_3g019530 45.070 71 37 2 104 173 718 787 8.41e-12 63.9
MS.gene25569.t1 MTR_3g019530 45.070 71 37 2 104 173 724 793 9.35e-12 63.9
MS.gene25569.t1 MTR_4g091840 40.278 72 43 0 104 175 752 823 1.02e-11 63.5
MS.gene25569.t1 MTR_3g019530 45.070 71 37 2 104 173 679 748 1.04e-11 63.5
MS.gene25569.t1 MTR_4g091760 40.000 70 41 1 104 173 747 815 1.14e-11 63.5
MS.gene25569.t1 MTR_1g021632 35.294 102 57 3 103 200 566 662 1.17e-11 63.5
MS.gene25569.t1 MTR_1g105710 34.711 121 59 3 55 173 535 637 1.42e-11 63.2
MS.gene25569.t1 MTR_7g056663 39.437 71 43 0 103 173 742 812 2.00e-11 62.8
MS.gene25569.t1 MTR_2g011210 39.189 74 45 0 104 177 743 816 2.02e-11 62.8
MS.gene25569.t1 MTR_5g067310 42.857 70 39 1 104 173 225 293 2.16e-11 62.0
MS.gene25569.t1 MTR_4g091730 32.773 119 77 3 82 200 665 780 2.78e-11 62.4
MS.gene25569.t1 MTR_8g052420 39.474 76 46 0 104 179 683 758 3.55e-11 62.0
MS.gene25569.t1 MTR_6g463710 30.435 92 64 0 82 173 770 861 3.85e-11 62.0
MS.gene25569.t1 MTR_6g057770 30.435 92 64 0 82 173 770 861 3.89e-11 62.0
MS.gene25569.t1 MTR_4g091850 31.206 141 78 4 41 173 689 818 4.11e-11 62.0
MS.gene25569.t1 MTR_1g021610 38.889 72 43 1 103 174 568 638 5.20e-11 61.6
MS.gene25569.t1 MTR_8g442310 38.571 70 43 0 104 173 652 721 7.10e-11 61.2
MS.gene25569.t1 MTR_4g040480 29.661 118 75 2 61 177 692 802 8.63e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25569.t1 AT4G03230 50.704 71 34 1 104 173 742 812 1.18e-17 80.9
MS.gene25569.t1 AT4G03230 50.704 71 34 1 104 173 749 819 1.18e-17 80.9
MS.gene25569.t1 AT4G03230 50.704 71 34 1 104 173 750 820 1.21e-17 80.9
MS.gene25569.t1 AT4G03230 50.704 71 34 1 104 173 807 877 1.22e-17 80.9
MS.gene25569.t1 AT4G03230 50.704 71 34 1 104 173 807 877 1.22e-17 80.9
MS.gene25569.t1 AT4G03230 50.704 71 34 1 104 173 907 977 1.43e-17 80.9
MS.gene25569.t1 AT4G03230 50.704 71 34 1 104 173 907 977 1.43e-17 80.9
MS.gene25569.t1 AT4G03230 50.704 71 34 1 104 173 835 905 1.45e-17 80.9
MS.gene25569.t1 AT4G11480 46.053 76 38 1 101 173 536 611 1.46e-16 77.8
MS.gene25569.t1 AT4G11480 46.053 76 38 1 101 173 541 616 1.52e-16 77.8
MS.gene25569.t1 AT4G11480 46.053 76 38 1 101 173 533 608 1.61e-16 77.8
MS.gene25569.t1 AT4G11470 44.737 76 39 1 101 173 551 626 7.60e-16 75.9
MS.gene25569.t1 AT4G11470 44.737 76 39 1 101 173 556 631 7.98e-16 75.5
MS.gene25569.t1 AT4G23260 47.143 70 37 0 104 173 546 615 3.37e-15 73.9
MS.gene25569.t1 AT4G23260 47.143 70 37 0 104 173 557 626 3.48e-15 73.9
MS.gene25569.t1 AT4G23320 44.286 70 39 0 104 173 401 470 3.84e-15 73.6
MS.gene25569.t1 AT4G23320 44.286 70 39 0 104 173 401 470 3.84e-15 73.6
MS.gene25569.t1 AT4G23300 45.455 77 39 1 100 173 566 642 4.55e-15 73.6
MS.gene25569.t1 AT4G23320 44.286 70 39 0 104 173 422 491 4.86e-15 73.2
MS.gene25569.t1 AT4G23250 45.714 70 38 0 104 173 572 641 5.41e-15 73.2
MS.gene25569.t1 AT4G23250 45.714 70 38 0 104 173 577 646 5.72e-15 73.2
MS.gene25569.t1 AT4G23240 45.455 77 39 1 100 173 239 315 6.12e-15 72.4
MS.gene25569.t1 AT4G23250 46.377 69 37 0 105 173 573 641 6.83e-15 73.2
MS.gene25569.t1 AT4G23240 45.455 77 39 1 100 173 546 622 8.45e-15 72.8
MS.gene25569.t1 AT4G23180 41.333 75 44 0 99 173 560 634 1.44e-14 72.0
MS.gene25569.t1 AT4G23270 41.176 85 47 1 92 173 529 613 2.12e-14 71.6
MS.gene25569.t1 AT4G23270 41.176 85 47 1 92 173 529 613 2.15e-14 71.6
MS.gene25569.t1 AT4G23270 41.176 85 47 1 92 173 529 613 2.15e-14 71.6
MS.gene25569.t1 AT4G23150 42.857 70 40 0 104 173 553 622 2.45e-14 71.2
MS.gene25569.t1 AT4G23130 38.824 85 49 1 92 173 547 631 3.39e-14 70.9
MS.gene25569.t1 AT4G23130 38.824 85 49 1 92 173 543 627 3.42e-14 70.9
MS.gene25569.t1 AT4G21380 38.095 105 59 2 103 201 742 846 3.94e-14 70.9
MS.gene25569.t1 AT4G11460 34.783 92 60 0 82 173 467 558 4.23e-14 70.5
MS.gene25569.t1 AT4G11460 34.783 92 60 0 82 173 542 633 4.66e-14 70.5
MS.gene25569.t1 AT3G45860 38.947 95 53 2 82 173 547 639 4.71e-14 70.5
MS.gene25569.t1 AT4G11460 34.783 92 60 0 82 173 545 636 4.75e-14 70.5
MS.gene25569.t1 AT1G11340 44.595 74 40 1 105 177 731 804 1.05e-13 69.7
MS.gene25569.t1 AT4G23140 41.429 70 41 0 104 173 574 643 1.19e-13 69.3
MS.gene25569.t1 AT4G23140 41.429 70 41 0 104 173 568 637 1.27e-13 69.3
MS.gene25569.t1 AT4G23290 44.928 69 38 0 105 173 582 650 1.27e-13 69.3
MS.gene25569.t1 AT4G23220 42.857 70 40 0 104 173 554 623 1.32e-13 69.3
MS.gene25569.t1 AT4G23290 44.928 69 38 0 105 173 539 607 1.33e-13 69.3
MS.gene25569.t1 AT1G11410 38.710 93 53 2 82 173 726 815 1.48e-13 68.9
MS.gene25569.t1 AT1G11410 38.144 97 56 2 82 177 719 812 1.61e-13 68.9
MS.gene25569.t1 AT1G11410 38.144 97 56 2 82 177 695 788 1.61e-13 68.9
MS.gene25569.t1 AT1G11410 38.710 93 53 2 82 173 604 693 1.73e-13 68.9
MS.gene25569.t1 AT1G61440 33.333 132 73 4 71 201 671 788 1.74e-13 68.9
MS.gene25569.t1 AT1G61440 33.333 132 73 4 71 201 676 793 1.80e-13 68.9
MS.gene25569.t1 AT1G65790 41.333 75 40 2 103 173 735 809 1.87e-13 68.9
MS.gene25569.t1 AT1G61440 33.333 132 73 4 71 201 701 818 1.88e-13 68.9
MS.gene25569.t1 AT4G23200 42.029 69 40 0 105 173 555 623 2.18e-13 68.6
MS.gene25569.t1 AT4G11490 39.726 73 44 0 104 176 539 611 2.64e-13 68.2
MS.gene25569.t1 AT4G23160 42.029 69 40 0 105 173 577 645 2.69e-13 68.2
MS.gene25569.t1 AT1G61500 37.374 99 55 3 104 201 713 805 5.85e-13 67.4
MS.gene25569.t1 AT1G61500 37.374 99 55 3 104 201 708 800 6.24e-13 67.4
MS.gene25569.t1 AT1G61500 37.374 99 55 3 104 201 690 782 6.45e-13 67.4
MS.gene25569.t1 AT4G23280 42.029 69 40 0 105 173 561 629 6.97e-13 67.0
MS.gene25569.t1 AT4G23280 42.029 69 40 0 105 173 513 581 7.03e-13 67.0
MS.gene25569.t1 AT4G23280 42.029 69 40 0 105 173 563 631 7.24e-13 67.0
MS.gene25569.t1 AT4G23230 40.000 70 42 0 104 173 554 623 7.99e-13 67.0
MS.gene25569.t1 AT1G61370 35.849 106 60 3 96 201 562 659 8.42e-13 67.0
MS.gene25569.t1 AT1G61390 40.404 99 52 3 104 201 567 659 9.44e-13 66.6
MS.gene25569.t1 AT1G61370 35.849 106 60 3 96 201 713 810 9.50e-13 66.6
MS.gene25569.t1 AT1G65800 40.000 75 41 2 103 173 739 813 9.66e-13 66.6
MS.gene25569.t1 AT1G61390 39.604 101 54 3 104 203 735 829 1.03e-12 66.6
MS.gene25569.t1 AT1G61390 36.879 141 67 5 7 144 52 173 9.31e-11 60.8
MS.gene25569.t1 AT1G11300 36.957 92 50 2 82 173 705 788 1.54e-12 66.2
MS.gene25569.t1 AT1G11300 36.957 92 50 2 82 173 690 773 1.55e-12 66.2
MS.gene25569.t1 AT1G61400 44.286 70 38 1 104 173 725 793 1.66e-12 65.9
MS.gene25569.t1 AT4G21390 34.783 92 53 1 104 195 745 829 1.69e-12 65.9
MS.gene25569.t1 AT1G61400 44.286 70 38 1 104 173 717 785 1.76e-12 65.9
MS.gene25569.t1 AT1G61490 38.000 100 54 3 104 201 557 650 2.43e-12 65.5
MS.gene25569.t1 AT1G61490 38.000 100 54 3 104 201 681 774 2.48e-12 65.5
MS.gene25569.t1 AT1G61490 38.000 100 54 3 104 201 681 774 2.48e-12 65.5
MS.gene25569.t1 AT1G61490 38.000 100 54 3 104 201 707 800 2.52e-12 65.5
MS.gene25569.t1 AT1G61490 38.000 100 54 3 104 201 707 800 2.52e-12 65.5
MS.gene25569.t1 AT1G61490 38.000 100 54 3 104 201 707 800 2.52e-12 65.5
MS.gene25569.t1 AT1G61490 38.000 100 54 3 104 201 707 800 2.52e-12 65.5
MS.gene25569.t1 AT4G23190 41.558 77 42 1 100 173 563 639 2.53e-12 65.5
MS.gene25569.t1 AT4G23190 41.558 77 42 1 100 173 485 561 2.70e-12 65.5
MS.gene25569.t1 AT4G23190 41.558 77 42 1 100 173 485 561 2.70e-12 65.5
MS.gene25569.t1 AT1G61480 36.364 99 56 3 104 201 713 805 2.96e-12 65.5
MS.gene25569.t1 AT1G61420 38.776 98 55 2 104 201 563 655 2.97e-12 65.1
MS.gene25569.t1 AT1G61420 38.776 98 55 2 104 201 561 653 3.11e-12 65.1
MS.gene25569.t1 AT1G61460 35.714 98 58 2 104 201 653 745 3.14e-12 65.1
MS.gene25569.t1 AT1G61420 38.776 98 55 2 104 201 711 803 3.41e-12 65.1
MS.gene25569.t1 AT1G61420 38.776 98 55 2 104 201 713 805 3.58e-12 65.1
MS.gene25569.t1 AT1G61420 38.776 98 55 2 104 201 713 805 3.58e-12 65.1
MS.gene25569.t1 AT4G23310 40.580 69 41 0 105 173 727 795 3.63e-12 65.1
MS.gene25569.t1 AT4G23310 40.580 69 41 0 105 173 687 755 3.70e-12 65.1
MS.gene25569.t1 AT1G11330 33.684 95 63 0 104 198 739 833 7.91e-12 63.9
MS.gene25569.t1 AT1G11330 33.684 95 63 0 104 198 741 835 8.53e-12 63.9
MS.gene25569.t1 AT1G61550 37.755 98 56 2 104 201 706 798 1.49e-11 63.2
MS.gene25569.t1 AT4G05200 36.264 91 57 1 97 187 575 664 1.92e-11 62.8
MS.gene25569.t1 AT4G05200 36.264 91 57 1 97 187 557 646 2.29e-11 62.8
MS.gene25569.t1 AT4G11530 37.143 70 44 0 104 173 570 639 2.29e-11 62.8
MS.gene25569.t1 AT1G61430 42.857 70 39 1 104 173 709 777 2.49e-11 62.8
MS.gene25569.t1 AT1G11350 37.333 75 47 0 104 178 729 803 2.50e-11 62.8
MS.gene25569.t1 AT1G61430 42.857 70 39 1 104 173 683 751 2.62e-11 62.4
MS.gene25569.t1 AT1G61430 42.857 70 39 1 104 173 683 751 2.62e-11 62.4
MS.gene25569.t1 AT1G61430 42.857 70 39 1 104 173 683 751 2.62e-11 62.4
MS.gene25569.t1 AT1G61430 42.857 70 39 1 104 173 706 774 2.66e-11 62.4
MS.gene25569.t1 AT4G00970 35.789 95 60 1 105 198 564 658 2.81e-11 62.4
MS.gene25569.t1 AT4G27300 44.444 72 34 3 105 173 718 786 2.98e-11 62.4
MS.gene25569.t1 AT1G61380 37.374 99 61 1 105 203 706 803 3.84e-11 62.0
MS.gene25569.t1 AT4G11900 31.132 106 63 2 71 176 730 825 3.96e-11 62.0
MS.gene25569.t1 AT4G11900 31.132 106 63 2 71 176 661 756 4.20e-11 62.0
MS.gene25569.t1 AT1G61380 37.374 99 61 1 105 203 559 656 4.53e-11 61.6
MS.gene25569.t1 AT4G28670 32.258 93 63 0 81 173 528 620 5.46e-11 61.6
MS.gene25569.t1 AT1G61610 35.922 103 63 2 3 104 36 136 8.17e-11 61.2
MS.gene25569.t1 AT4G21400 33.010 103 61 2 71 173 546 640 8.66e-11 60.8

Find 38 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCAAGGCTTGGGATCTT+TGG 0.203626 8.2:-43688547 MS.gene25569:intron
CGTAGGTATAAGGTCTAAAA+AGG 0.285355 8.2:-43688917 MS.gene25569:CDS
GATCTTTGGACCAACGATTC+AGG 0.318064 8.2:-43688533 MS.gene25569:CDS
TACGAAATGACAAGATTGTT+TGG 0.329405 8.2:-43688894 MS.gene25569:CDS
AATGACACTGCATCCCTTCC+AGG 0.339093 8.2:-43688371 MS.gene25569:CDS
GACATGGTTGGTCTATCTTC+TGG 0.347801 8.2:+43688416 None:intergenic
GGAACTAATTGATTCAGAAT+TGG 0.375640 8.2:-43688507 MS.gene25569:CDS
GGTAACATTCGCCTCATAGA+TGG 0.381128 8.2:-43688814 MS.gene25569:CDS
ACGAAATGACAAGATTGTTT+GGG 0.411632 8.2:-43688893 MS.gene25569:CDS
CCCTGTACTACGTAGGTATA+AGG 0.425130 8.2:-43688927 MS.gene25569:CDS
TCTTGGTACTAAATGCTTGT+TGG 0.440220 8.2:+43688475 None:intergenic
TCAGACACACTTGTTTCAAA+TGG 0.443743 8.2:-43688997 MS.gene25569:CDS
AACGCTGAGGATGTAACAAA+TGG 0.445733 8.2:+43688853 None:intergenic
CCAGCATTTCAAAACATAAG+AGG 0.460254 8.2:-43688338 MS.gene25569:CDS
AATGCTGGTGGCTTTGGACC+TGG 0.462185 8.2:+43688353 None:intergenic
GAAGAAAACTTCTCTGTGAA+TGG 0.467802 8.2:-43688284 MS.gene25569:CDS
AGTCCGATATTCACGTATCT+TGG 0.470506 8.2:+43688458 None:intergenic
GACACACTTGTTTCAAATGG+TGG 0.471655 8.2:-43688994 MS.gene25569:CDS
GTACCAAGATACGTGAATAT+CGG 0.483526 8.2:-43688461 MS.gene25569:CDS
ACCTTATACCTACGTAGTAC+AGG 0.484779 8.2:+43688926 None:intergenic
TCTGACGTTGTATCAATGTT+TGG 0.486903 8.2:-43688395 MS.gene25569:CDS
TAGTATCTACGCAACTCTCT+TGG 0.503866 8.2:-43688746 MS.gene25569:CDS
TCTCTTGGACACAGGAAACC+TGG 0.526499 8.2:-43688731 MS.gene25569:intron
TAGTTCCATTCCTGAATCGT+TGG 0.540033 8.2:+43688523 None:intergenic
TGGTGGCTTTGGACCTGGAA+GGG 0.541397 8.2:+43688358 None:intergenic
AATGGTGGAAACTACGAACT+AGG 0.552256 8.2:-43688979 MS.gene25569:CDS
GCGAATGTTACCATTGTGAA+TGG 0.561889 8.2:+43688825 None:intergenic
GCGTATTATCTCCATCTATG+AGG 0.568166 8.2:+43688803 None:intergenic
TACGCAACTCTCTTGGACAC+AGG 0.579026 8.2:-43688739 MS.gene25569:CDS
CCTTATACCTACGTAGTACA+GGG 0.580432 8.2:+43688927 None:intergenic
ACGCTGAGGATGTAACAAAT+GGG 0.581527 8.2:+43688854 None:intergenic
TTGGACCAACGATTCAGGAA+TGG 0.582370 8.2:-43688528 MS.gene25569:CDS
CTGGTGGCTTTGGACCTGGA+AGG 0.594048 8.2:+43688357 None:intergenic
CATTGATACAACGTCAGACA+TGG 0.596563 8.2:+43688400 None:intergenic
GATACAACGTCAGACATGGT+TGG 0.654037 8.2:+43688404 None:intergenic
GCGTTGCTAACCATTCACAA+TGG 0.726213 8.2:-43688835 MS.gene25569:CDS
AACTCGACCCTGTACTACGT+AGG 0.737165 8.2:-43688934 MS.gene25569:CDS
GTGAATGGTTAGCAACGCTG+AGG 0.762231 8.2:+43688840 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATAGATAGTATTTTTATT+AGG + chr8.2:43688675-43688694 None:intergenic 15.0%
!! ATTAAAACCCAAAATACAAA+AGG + chr8.2:43688630-43688649 None:intergenic 20.0%
!! TTAAAACCCAAAATACAAAA+GGG + chr8.2:43688629-43688648 None:intergenic 20.0%
!! AAGTTTTCTTCTATGCTATT+AGG + chr8.2:43688981-43689000 None:intergenic 25.0%
!! ATCTATCTATGTGATGATTT+TGG - chr8.2:43688687-43688706 MS.gene25569:intron 25.0%
!! TCTATCTATGTGATGATTTT+GGG - chr8.2:43688688-43688707 MS.gene25569:intron 25.0%
ACGAAATGACAAGATTGTTT+GGG - chr8.2:43688381-43688400 MS.gene25569:CDS 30.0%
TACGAAATGACAAGATTGTT+TGG - chr8.2:43688380-43688399 MS.gene25569:CDS 30.0%
! AGGATTTTTCACTACAAAGA+TGG - chr8.2:43688315-43688334 MS.gene25569:CDS 30.0%
! CTTTACTTGTTGAATACTCA+AGG - chr8.2:43688713-43688732 MS.gene25569:intron 30.0%
! GGAACTAATTGATTCAGAAT+TGG - chr8.2:43688767-43688786 MS.gene25569:CDS 30.0%
CCAGCATTTCAAAACATAAG+AGG - chr8.2:43688936-43688955 MS.gene25569:CDS 35.0%
CGTAGGTATAAGGTCTAAAA+AGG - chr8.2:43688357-43688376 MS.gene25569:CDS 35.0%
GAAGAAAACTTCTCTGTGAA+TGG - chr8.2:43688990-43689009 MS.gene25569:CDS 35.0%
GTACCAAGATACGTGAATAT+CGG - chr8.2:43688813-43688832 MS.gene25569:CDS 35.0%
TCAGACACACTTGTTTCAAA+TGG - chr8.2:43688277-43688296 MS.gene25569:CDS 35.0%
TCTGACGTTGTATCAATGTT+TGG - chr8.2:43688879-43688898 MS.gene25569:CDS 35.0%
TCTTGGTACTAAATGCTTGT+TGG + chr8.2:43688802-43688821 None:intergenic 35.0%
TTGTTGAATACTCAAGGCTT+GGG - chr8.2:43688719-43688738 MS.gene25569:intron 35.0%
! GAGACACCCTTTTGTATTTT+GGG - chr8.2:43688620-43688639 MS.gene25569:intron 35.0%
! TGAGACACCCTTTTGTATTT+TGG - chr8.2:43688619-43688638 MS.gene25569:intron 35.0%
!! AAAATACAAAAGGGTGTCTC+AGG + chr8.2:43688620-43688639 None:intergenic 35.0%
!! AAATACAAAAGGGTGTCTCA+GGG + chr8.2:43688619-43688638 None:intergenic 35.0%
!!! CCTCTTATGTTTTGAAATGC+TGG + chr8.2:43688939-43688958 None:intergenic 35.0%
!!! CTTATGTTTTGAAATGCTGG+TGG + chr8.2:43688936-43688955 None:intergenic 35.0%
AACGCTGAGGATGTAACAAA+TGG + chr8.2:43688424-43688443 None:intergenic 40.0%
ACCTTATACCTACGTAGTAC+AGG + chr8.2:43688351-43688370 None:intergenic 40.0%
ACGCTGAGGATGTAACAAAT+GGG + chr8.2:43688423-43688442 None:intergenic 40.0%
AGTCCGATATTCACGTATCT+TGG + chr8.2:43688819-43688838 None:intergenic 40.0%
CATTGATACAACGTCAGACA+TGG + chr8.2:43688877-43688896 None:intergenic 40.0%
CCTTATACCTACGTAGTACA+GGG + chr8.2:43688350-43688369 None:intergenic 40.0%
CTTGTTGAATACTCAAGGCT+TGG - chr8.2:43688718-43688737 MS.gene25569:intron 40.0%
GACACACTTGTTTCAAATGG+TGG - chr8.2:43688280-43688299 MS.gene25569:CDS 40.0%
GCGAATGTTACCATTGTGAA+TGG + chr8.2:43688452-43688471 None:intergenic 40.0%
GCGTATTATCTCCATCTATG+AGG + chr8.2:43688474-43688493 None:intergenic 40.0%
TAGAGTTGTTCTTCAGTACC+AGG + chr8.2:43688564-43688583 None:intergenic 40.0%
TAGTATCTACGCAACTCTCT+TGG - chr8.2:43688528-43688547 MS.gene25569:CDS 40.0%
TAGTTCCATTCCTGAATCGT+TGG + chr8.2:43688754-43688773 None:intergenic 40.0%
! AATGGTGGAAACTACGAACT+AGG - chr8.2:43688295-43688314 MS.gene25569:CDS 40.0%
! ACTCTAACCAAGCGATTTTG+TGG - chr8.2:43688578-43688597 MS.gene25569:intron 40.0%
!! AATACAAAAGGGTGTCTCAG+GGG + chr8.2:43688618-43688637 None:intergenic 40.0%
!!! TTTTGAAATGCTGGTGGCTT+TGG + chr8.2:43688930-43688949 None:intergenic 40.0%
AACTCTGCCACAAAATCGCT+TGG + chr8.2:43688588-43688607 None:intergenic 45.0%
CCCTGTACTACGTAGGTATA+AGG - chr8.2:43688347-43688366 MS.gene25569:CDS 45.0%
GATACAACGTCAGACATGGT+TGG + chr8.2:43688873-43688892 None:intergenic 45.0%
GATCTTTGGACCAACGATTC+AGG - chr8.2:43688741-43688760 MS.gene25569:CDS 45.0%
GCGTTGCTAACCATTCACAA+TGG - chr8.2:43688439-43688458 MS.gene25569:CDS 45.0%
GGTAACATTCGCCTCATAGA+TGG - chr8.2:43688460-43688479 MS.gene25569:CDS 45.0%
TACTCAAGGCTTGGGATCTT+TGG - chr8.2:43688727-43688746 MS.gene25569:intron 45.0%
TTGGACCAACGATTCAGGAA+TGG - chr8.2:43688746-43688765 MS.gene25569:CDS 45.0%
!! GACATGGTTGGTCTATCTTC+TGG + chr8.2:43688861-43688880 None:intergenic 45.0%
AACTCGACCCTGTACTACGT+AGG - chr8.2:43688340-43688359 MS.gene25569:CDS 50.0%
AATGACACTGCATCCCTTCC+AGG - chr8.2:43688903-43688922 MS.gene25569:CDS 50.0%
GTGAATGGTTAGCAACGCTG+AGG + chr8.2:43688437-43688456 None:intergenic 50.0%
TACGCAACTCTCTTGGACAC+AGG - chr8.2:43688535-43688554 MS.gene25569:CDS 50.0%
TCTCTTGGACACAGGAAACC+TGG - chr8.2:43688543-43688562 MS.gene25569:intron 50.0%
!! AATGCTGGTGGCTTTGGACC+TGG + chr8.2:43688924-43688943 None:intergenic 55.0%
!! TGGTGGCTTTGGACCTGGAA+GGG + chr8.2:43688919-43688938 None:intergenic 55.0%
!! CTGGTGGCTTTGGACCTGGA+AGG + chr8.2:43688920-43688939 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 43688256 43689040 43688256 ID=MS.gene25569
chr8.2 mRNA 43688256 43689040 43688256 ID=MS.gene25569.t1;Parent=MS.gene25569
chr8.2 exon 43688732 43689040 43688732 ID=MS.gene25569.t1.exon1;Parent=MS.gene25569.t1
chr8.2 CDS 43688732 43689040 43688732 ID=cds.MS.gene25569.t1;Parent=MS.gene25569.t1
chr8.2 exon 43688256 43688561 43688256 ID=MS.gene25569.t1.exon2;Parent=MS.gene25569.t1
chr8.2 CDS 43688256 43688561 43688256 ID=cds.MS.gene25569.t1;Parent=MS.gene25569.t1
Gene Sequence

>MS.gene25569

ATGGGGCAATCAGTAAGAATTTCAGACACACTTGTTTCAAATGGTGGAAACTACGAACTAGGATTTTTCACTACAAAGATGGAGAACTCGACCCTGTACTACGTAGGTATAAGGTCTAAAAAGGTACGAAATGACAAGATTGTTTGGGTTGAAAGATATTATGACCCATTTGTTACATCCTCAGCGTTGCTAACCATTCACAATGGTAACATTCGCCTCATAGATGGAGATAATACGCACGACGTGACAAGTAATCAGAACAGCAATAGTATTAGTATCTACGCAACTCTCTTGGACACAGGAAACCTGGTACTGAAGAACAACTCTAACCAAGCGATTTTGTGGCAGAGTTTTGATAACCCCTGAGACACCCTTTTGTATTTTGGGTTTTAATACTATTTAGAAATATTATAATGCCTAATAAAAATACTATCTATCTATGTGATGATTTTGGGTTCTTTACTTGTTGAATACTCAAGGCTTGGGATCTTTGGACCAACGATTCAGGAATGGAACTAATTGATTCAGAATTGGATGATATATCCAACAAGCATTTAGTACCAAGATACGTGAATATCGGACTTCTCTGTGTTCAACAAAGTCCAGAAGATAGACCAACCATGTCTGACGTTGTATCAATGTTTGGTAATGACACTGCATCCCTTCCAGGTCCAAAGCCACCAGCATTTCAAAACATAAGAGGTATCGAATATTCAAGACTTCCTAATAGCATAGAAGAAAACTTCTCTGTGAATGGCATCACAGATTCAGTCTATAAGAATTGA
Protein sequence

>MS.gene25569.t1

MGQSVRISDTLVSNGGNYELGFFTTKMENSTLYYVGIRSKKVRNDKIVWVERYYDPFVTSSALLTIHNGNIRLIDGDNTHDVTSNQNSNSISIYATLLDTGNLAWDLWTNDSGMELIDSELDDISNKHLVPRYVNIGLLCVQQSPEDRPTMSDVVSMFGNDTASLPGPKPPAFQNIRGIEYSRLPNSIEENFSVNGITDSVYKN