Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25690.t1 | XP_003601529.1 | 70.4 | 541 | 5 | 2 | 1 | 386 | 1 | 541 | 1.50E-197 | 698.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25690.t1 | Q96303 | 55.4 | 540 | 80 | 2 | 1 | 386 | 1 | 533 | 3.1e-156 | 552.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25690.t1 | B2G3Q0 | 70.4 | 541 | 5 | 2 | 1 | 386 | 1 | 541 | 1.1e-197 | 698.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050645 | MS.gene25690 | 0.817772 | 2.77E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25690.t1 | MTR_3g082700 | 92.177 | 294 | 22 | 1 | 94 | 386 | 248 | 541 | 0.0 | 538 |
| MS.gene25690.t1 | MTR_3g082700 | 100.000 | 109 | 0 | 0 | 1 | 109 | 1 | 109 | 7.43e-70 | 229 |
| MS.gene25690.t1 | MTR_1g074930 | 73.379 | 293 | 76 | 1 | 94 | 386 | 248 | 538 | 6.94e-161 | 462 |
| MS.gene25690.t1 | MTR_1g074930 | 81.905 | 105 | 19 | 0 | 5 | 109 | 4 | 108 | 4.09e-50 | 176 |
| MS.gene25690.t1 | MTR_1g069935 | 73.962 | 265 | 66 | 1 | 103 | 367 | 257 | 518 | 7.25e-145 | 421 |
| MS.gene25690.t1 | MTR_1g069935 | 81.651 | 109 | 20 | 0 | 1 | 109 | 1 | 109 | 3.80e-54 | 187 |
| MS.gene25690.t1 | MTR_1g043220 | 76.984 | 252 | 58 | 0 | 120 | 371 | 274 | 525 | 8.37e-145 | 422 |
| MS.gene25690.t1 | MTR_1g043220 | 80.000 | 105 | 21 | 0 | 5 | 109 | 4 | 108 | 1.04e-49 | 176 |
| MS.gene25690.t1 | MTR_1g043200 | 76.494 | 251 | 59 | 0 | 120 | 370 | 274 | 524 | 1.23e-144 | 421 |
| MS.gene25690.t1 | MTR_1g043200 | 81.905 | 105 | 19 | 0 | 5 | 109 | 4 | 108 | 6.23e-51 | 179 |
| MS.gene25690.t1 | MTR_1g043290 | 75.781 | 256 | 60 | 1 | 124 | 379 | 278 | 531 | 4.20e-144 | 420 |
| MS.gene25690.t1 | MTR_1g043290 | 80.000 | 105 | 21 | 0 | 5 | 109 | 4 | 108 | 1.02e-49 | 175 |
| MS.gene25690.t1 | MTR_7g096880 | 73.404 | 282 | 70 | 1 | 103 | 384 | 257 | 533 | 2.50e-142 | 415 |
| MS.gene25690.t1 | MTR_7g096880 | 84.404 | 109 | 17 | 0 | 1 | 109 | 1 | 109 | 4.38e-56 | 192 |
| MS.gene25690.t1 | MTR_7g096870 | 72.438 | 283 | 74 | 2 | 103 | 384 | 257 | 536 | 4.40e-140 | 409 |
| MS.gene25690.t1 | MTR_7g096870 | 83.486 | 109 | 18 | 0 | 1 | 109 | 1 | 109 | 1.77e-56 | 193 |
| MS.gene25690.t1 | MTR_1g069930 | 64.211 | 285 | 99 | 2 | 98 | 382 | 252 | 533 | 3.08e-129 | 382 |
| MS.gene25690.t1 | MTR_1g069930 | 71.560 | 109 | 31 | 0 | 1 | 109 | 1 | 109 | 3.42e-46 | 166 |
| MS.gene25690.t1 | MTR_1g074940 | 69.767 | 258 | 62 | 2 | 103 | 357 | 256 | 500 | 3.20e-126 | 374 |
| MS.gene25690.t1 | MTR_1g074940 | 78.899 | 109 | 22 | 1 | 1 | 109 | 1 | 108 | 7.25e-52 | 181 |
| MS.gene25690.t1 | MTR_5g068140 | 50.825 | 303 | 120 | 6 | 97 | 382 | 250 | 540 | 1.63e-88 | 278 |
| MS.gene25690.t1 | MTR_5g068140 | 73.786 | 103 | 27 | 0 | 7 | 109 | 6 | 108 | 4.90e-45 | 163 |
| MS.gene25690.t1 | MTR_4g083960 | 44.545 | 330 | 155 | 8 | 61 | 372 | 193 | 512 | 7.93e-84 | 265 |
| MS.gene25690.t1 | MTR_4g083960 | 58.716 | 109 | 42 | 2 | 1 | 109 | 1 | 106 | 1.35e-25 | 108 |
| MS.gene25690.t1 | MTR_1g028600 | 50.725 | 276 | 123 | 3 | 107 | 382 | 258 | 520 | 6.31e-83 | 263 |
| MS.gene25690.t1 | MTR_1g028600 | 73.077 | 104 | 28 | 0 | 6 | 109 | 3 | 106 | 2.70e-45 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25690.t1 | AT3G54700 | 76.779 | 267 | 56 | 2 | 103 | 368 | 257 | 518 | 1.55e-150 | 436 |
| MS.gene25690.t1 | AT3G54700 | 84.404 | 109 | 17 | 0 | 1 | 109 | 1 | 109 | 8.42e-56 | 192 |
| MS.gene25690.t1 | AT3G54700 | 76.779 | 267 | 56 | 2 | 103 | 368 | 257 | 518 | 1.55e-150 | 436 |
| MS.gene25690.t1 | AT3G54700 | 84.404 | 109 | 17 | 0 | 1 | 109 | 1 | 109 | 8.42e-56 | 192 |
| MS.gene25690.t1 | AT2G38940 | 74.349 | 269 | 69 | 0 | 94 | 362 | 248 | 516 | 1.18e-149 | 434 |
| MS.gene25690.t1 | AT2G38940 | 86.239 | 109 | 15 | 0 | 1 | 109 | 1 | 109 | 2.24e-57 | 196 |
| MS.gene25690.t1 | AT2G32830 | 68.836 | 292 | 89 | 2 | 97 | 386 | 251 | 542 | 3.89e-146 | 425 |
| MS.gene25690.t1 | AT2G32830 | 79.817 | 109 | 22 | 0 | 1 | 109 | 1 | 109 | 4.13e-50 | 177 |
| MS.gene25690.t1 | AT5G43360 | 64.127 | 315 | 100 | 2 | 66 | 368 | 208 | 521 | 1.17e-142 | 416 |
| MS.gene25690.t1 | AT5G43360 | 78.899 | 109 | 23 | 0 | 1 | 109 | 1 | 109 | 2.03e-53 | 185 |
| MS.gene25690.t1 | AT5G43350 | 64.038 | 317 | 101 | 2 | 66 | 370 | 208 | 523 | 1.71e-142 | 415 |
| MS.gene25690.t1 | AT5G43350 | 79.817 | 109 | 22 | 0 | 1 | 109 | 1 | 109 | 3.16e-54 | 187 |
| MS.gene25690.t1 | AT5G43370 | 63.722 | 317 | 102 | 2 | 66 | 370 | 208 | 523 | 1.10e-129 | 382 |
| MS.gene25690.t1 | AT5G43370 | 79.817 | 109 | 22 | 0 | 1 | 109 | 1 | 109 | 4.95e-54 | 187 |
| MS.gene25690.t1 | AT5G43370 | 63.722 | 317 | 102 | 2 | 66 | 370 | 208 | 523 | 1.10e-129 | 382 |
| MS.gene25690.t1 | AT5G43370 | 79.817 | 109 | 22 | 0 | 1 | 109 | 1 | 109 | 4.95e-54 | 187 |
| MS.gene25690.t1 | AT5G43340 | 57.746 | 284 | 106 | 2 | 91 | 374 | 246 | 515 | 2.65e-114 | 343 |
| MS.gene25690.t1 | AT5G43340 | 66.055 | 109 | 36 | 1 | 1 | 108 | 1 | 109 | 8.52e-42 | 154 |
| MS.gene25690.t1 | AT1G20860 | 44.689 | 273 | 144 | 5 | 113 | 379 | 255 | 526 | 1.09e-71 | 233 |
| MS.gene25690.t1 | AT1G20860 | 50.962 | 104 | 45 | 1 | 6 | 109 | 3 | 100 | 2.72e-27 | 113 |
| MS.gene25690.t1 | AT1G20860 | 44.689 | 273 | 144 | 5 | 113 | 379 | 307 | 578 | 2.48e-71 | 234 |
| MS.gene25690.t1 | AT1G20860 | 50.962 | 104 | 45 | 1 | 6 | 109 | 55 | 152 | 2.72e-27 | 114 |
| MS.gene25690.t1 | AT1G76430 | 38.125 | 320 | 170 | 7 | 66 | 367 | 204 | 513 | 1.84e-65 | 217 |
| MS.gene25690.t1 | AT1G76430 | 54.286 | 105 | 42 | 2 | 5 | 109 | 3 | 101 | 2.66e-29 | 119 |
| MS.gene25690.t1 | AT4G08895 | 50.714 | 140 | 37 | 1 | 167 | 306 | 23 | 130 | 1.47e-44 | 151 |
| MS.gene25690.t1 | AT4G08878 | 66.667 | 78 | 26 | 0 | 31 | 108 | 13 | 90 | 5.36e-28 | 111 |
Find 71 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCTAACTCTTGCTCTTA+TGG | 0.192232 | 3.3:-69478904 | MS.gene25690:intron |
| ACAACAAAAGTGGTTGAATT+TGG | 0.258019 | 3.3:+69477812 | None:intergenic |
| TGGTTGGCTTGGGGACAAAA+TGG | 0.266103 | 3.3:-69478943 | MS.gene25690:CDS |
| AGCACTTTGTGGAACTGTTC+CGG | 0.298632 | 3.3:-69478020 | MS.gene25690:CDS |
| GTGGAACTGTTCCGGGATAC+TGG | 0.329105 | 3.3:-69478012 | MS.gene25690:CDS |
| GGAGCTATTATAGGTGCATT+TGG | 0.340643 | 3.3:-69477719 | MS.gene25690:CDS |
| CCAAGTAACTTGGTGACATT+TGG | 0.341844 | 3.3:+69479080 | None:intergenic |
| GCACTTTGTGGAACTGTTCC+GGG | 0.351063 | 3.3:-69478019 | MS.gene25690:CDS |
| GTGCAAGACAAGAACAGTTT+TGG | 0.354549 | 3.3:-69478244 | MS.gene25690:CDS |
| TTTACTGCTGCTGATACATT+TGG | 0.358950 | 3.3:+69479008 | None:intergenic |
| GGGAAAGCTGGAGCTATTAT+AGG | 0.362181 | 3.3:-69477728 | MS.gene25690:CDS |
| ACTAAAAGAGAAAACAGAAT+TGG | 0.370784 | 3.3:-69477881 | MS.gene25690:CDS |
| ACATTTGGAGGCAAAGTTCC+AGG | 0.372446 | 3.3:+69479023 | None:intergenic |
| CCAAATGTCACCAAGTTACT+TGG | 0.375080 | 3.3:-69479080 | MS.gene25690:CDS |
| TTTCTTGTGCCAGAAGCTAA+TGG | 0.378357 | 3.3:-69477572 | MS.gene25690:CDS |
| CTTGCTGTGGTTAATTGTCT+TGG | 0.380235 | 3.3:-69477608 | MS.gene25690:CDS |
| AAAGATATTTATAGTAGTAT+TGG | 0.386205 | 3.3:-69478115 | MS.gene25690:CDS |
| GCAGGGTACCCTGCTGGTAT+TGG | 0.388751 | 3.3:-69477653 | MS.gene25690:CDS |
| ATCAACAAGCCTCCTCTAAT+AGG | 0.388915 | 3.3:-69477487 | MS.gene25690:CDS |
| GAAATGGTACCATTGTGTTT+TGG | 0.389577 | 3.3:+69479163 | None:intergenic |
| TTCACAGCCATCATAATTGC+TGG | 0.392806 | 3.3:-69479143 | MS.gene25690:CDS |
| AATGTATCAGCAGCAGTAAA+TGG | 0.399626 | 3.3:-69479005 | MS.gene25690:CDS |
| TCCTCTGCAGCAGGGAAAGC+TGG | 0.401210 | 3.3:-69477740 | MS.gene25690:CDS |
| AGCCATCATAATTGCTGGTA+TGG | 0.413402 | 3.3:-69479138 | MS.gene25690:CDS |
| GCTCTTTGTGGCACTCTAGC+AGG | 0.420937 | 3.3:-69478978 | MS.gene25690:CDS |
| AGAAGCTAATGGAAAATCAT+TGG | 0.433339 | 3.3:-69477561 | MS.gene25690:CDS |
| TGACATTTGGTATGCAGAAA+AGG | 0.456001 | 3.3:+69479093 | None:intergenic |
| GGTTGGCTTGGGGACAAAAT+GGG | 0.456779 | 3.3:-69478942 | MS.gene25690:CDS |
| GTAAATGGTGTTGCTCTTTG+TGG | 0.464585 | 3.3:-69478990 | MS.gene25690:CDS |
| GTTCCAGGCTTGAGTGCACC+TGG | 0.466167 | 3.3:+69479038 | None:intergenic |
| ACAACGCTTATAGCACTTTG+TGG | 0.467494 | 3.3:-69478031 | MS.gene25690:CDS |
| TTCTTCATTCCAATACCAGC+AGG | 0.476749 | 3.3:+69477644 | None:intergenic |
| ACTGCTGCTGATACATTTGG+AGG | 0.480011 | 3.3:+69479011 | None:intergenic |
| CACCCAGGTGCACTCAAGCC+TGG | 0.480902 | 3.3:-69479041 | MS.gene25690:CDS |
| CACAGGAACAGTCCTATTAG+AGG | 0.487695 | 3.3:+69477475 | None:intergenic |
| CAAGCCAACCAAAGAAAAGT+TGG | 0.491977 | 3.3:+69478955 | None:intergenic |
| TCGCTATTCCGTATGATCAT+TGG | 0.501987 | 3.3:-69477904 | MS.gene25690:CDS |
| CATGGTATATCCTCTGCAGC+AGG | 0.519226 | 3.3:-69477749 | MS.gene25690:CDS |
| TAGTATTGGTTGGCTTCCAC+CGG | 0.519880 | 3.3:-69478101 | MS.gene25690:CDS |
| CTTGTATGCTTCACAAAGCA+AGG | 0.520337 | 3.3:-69477693 | MS.gene25690:CDS |
| CAATTATGATGGCTGTGAAA+TGG | 0.521173 | 3.3:+69479147 | None:intergenic |
| GTATATTCTTCCAAGTAACT+TGG | 0.522891 | 3.3:+69479070 | None:intergenic |
| CATGTAGACCTCAACCTAGC+CGG | 0.533609 | 3.3:+69477773 | None:intergenic |
| GCCATCATAATTGCTGGTAT+GGG | 0.536058 | 3.3:-69479137 | MS.gene25690:CDS |
| ATGTAGACCTCAACCTAGCC+GGG | 0.545552 | 3.3:+69477774 | None:intergenic |
| TGCTTGGAACAACTTCCACT+TGG | 0.545836 | 3.3:-69478180 | MS.gene25690:CDS |
| AGAGATGCAGGGTACCCTGC+TGG | 0.548047 | 3.3:-69477659 | MS.gene25690:CDS |
| ATATTTATAGTAGTATTGGT+TGG | 0.553131 | 3.3:-69478111 | MS.gene25690:CDS |
| TCCCATACCAGCAATTATGA+TGG | 0.555478 | 3.3:+69479136 | None:intergenic |
| AGACACGGTCTTCATCTGCT+TGG | 0.560681 | 3.3:-69478196 | MS.gene25690:CDS |
| CTCGGCAGGCACAACAAAAG+TGG | 0.561882 | 3.3:+69477802 | None:intergenic |
| GCCACCGTGAACCAGTATCC+CGG | 0.570413 | 3.3:+69478001 | None:intergenic |
| TGTTCCGGGATACTGGTTCA+CGG | 0.578109 | 3.3:-69478005 | MS.gene25690:CDS |
| CTAGCCGGGAAAATCTCGGC+AGG | 0.590971 | 3.3:+69477788 | None:intergenic |
| CAACCTAGCCGGGAAAATCT+CGG | 0.596897 | 3.3:+69477784 | None:intergenic |
| AGGTTGAGGTCTACATGTCA+TGG | 0.608393 | 3.3:-69477767 | MS.gene25690:CDS |
| TCCAGCTTTCCCTGCTGCAG+AGG | 0.609930 | 3.3:+69477739 | None:intergenic |
| ATTGCATTCATATCTTGTGC+CGG | 0.613095 | 3.3:+69478082 | None:intergenic |
| AAATCATTGGAAGAAATGAG+TGG | 0.620125 | 3.3:-69477548 | MS.gene25690:CDS |
| GCATTCATATCTTGTGCCGG+TGG | 0.633100 | 3.3:+69478085 | None:intergenic |
| ATGGTATATCCTCTGCAGCA+GGG | 0.647894 | 3.3:-69477748 | MS.gene25690:CDS |
| TTCCAGGCTTGAGTGCACCT+GGG | 0.648892 | 3.3:+69479039 | None:intergenic |
| AAGGAGTTTCTTAGAAGACA+CGG | 0.654294 | 3.3:-69478211 | MS.gene25690:CDS |
| ATCATGGCTCGTGAACAACT+AGG | 0.672656 | 3.3:-69479209 | MS.gene25690:CDS |
| AGGAACAGTCCTATTAGAGG+AGG | 0.680131 | 3.3:+69477478 | None:intergenic |
| AGAATATACTACACACACCC+AGG | 0.681223 | 3.3:-69479056 | MS.gene25690:CDS |
| TCTTCATTCCAATACCAGCA+GGG | 0.696508 | 3.3:+69477645 | None:intergenic |
| TTGATGCAGCCAAAACACAA+TGG | 0.702246 | 3.3:-69479172 | MS.gene25690:CDS |
| AATATCGAGAAGAAACCAAG+TGG | 0.702390 | 3.3:+69478165 | None:intergenic |
| GTAATAGTAATACATCACAC+AGG | 0.741588 | 3.3:+69477458 | None:intergenic |
| TCCGGGATACTGGTTCACGG+TGG | 0.750080 | 3.3:-69478002 | MS.gene25690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATATTTATAGTAGTAT+TGG | - | chr3.3:69478563-69478582 | MS.gene25690:intron | 15.0% |
| !!! | ACTTTTTTCTTTGCAAATTT+TGG | - | chr3.3:69478842-69478861 | MS.gene25690:intron | 20.0% |
| !!! | ATATTTATAGTAGTATTGGT+TGG | - | chr3.3:69478567-69478586 | MS.gene25690:intron | 20.0% |
| ! | ACTAAAAGAGAAAACAGAAT+TGG | - | chr3.3:69478797-69478816 | MS.gene25690:intron | 25.0% |
| ! | ACTACTAAATCACTAACATT+TGG | + | chr3.3:69478216-69478235 | None:intergenic | 25.0% |
| ! | ATGGGAAGAAAAAAAGTTTA+TGG | - | chr3.3:69477754-69477773 | MS.gene25690:CDS | 25.0% |
| !!! | CTCTTTGTTTCTTTAGATTT+TGG | - | chr3.3:69477857-69477876 | MS.gene25690:CDS | 25.0% |
| AAATCATTGGAAGAAATGAG+TGG | - | chr3.3:69479130-69479149 | MS.gene25690:CDS | 30.0% | |
| ACAACAAAAGTGGTTGAATT+TGG | + | chr3.3:69478869-69478888 | None:intergenic | 30.0% | |
| ACATAATAGTAGCTGAAAGA+GGG | + | chr3.3:69477909-69477928 | None:intergenic | 30.0% | |
| ACCTATATAGATAAGTAGCT+CGG | + | chr3.3:69478310-69478329 | None:intergenic | 30.0% | |
| AGAAGCTAATGGAAAATCAT+TGG | - | chr3.3:69479117-69479136 | MS.gene25690:CDS | 30.0% | |
| CAAGAAAAAGTAGACAAGAT+AGG | - | chr3.3:69478410-69478429 | MS.gene25690:intron | 30.0% | |
| GTATATTCTTCCAAGTAACT+TGG | + | chr3.3:69477611-69477630 | None:intergenic | 30.0% | |
| ! | CGTTTTGCAATTCAACTAAT+GGG | - | chr3.3:69478719-69478738 | MS.gene25690:intron | 30.0% |
| ! | CTTTTAGTCCAATGATCATA+CGG | + | chr3.3:69478785-69478804 | None:intergenic | 30.0% |
| ! | TCGTTTTGCAATTCAACTAA+TGG | - | chr3.3:69478718-69478737 | MS.gene25690:intron | 30.0% |
| ! | TGCTTTTGATCATGCTTTTA+AGG | - | chr3.3:69478035-69478054 | MS.gene25690:CDS | 30.0% |
| !! | AATGATTTTCCATTAGCTTC+TGG | + | chr3.3:69479118-69479137 | None:intergenic | 30.0% |
| !!! | CAGTTTTGGTTTGTTTAGTA+AGG | - | chr3.3:69478448-69478467 | MS.gene25690:intron | 30.0% |
| !!! | TGTTTCTTTAGATTTTGGCT+AGG | - | chr3.3:69477862-69477881 | MS.gene25690:CDS | 30.0% |
| !!! | TTTAGATTTTGGCTAGGTTT+TGG | - | chr3.3:69477868-69477887 | MS.gene25690:CDS | 30.0% |
| AAGGAGTTTCTTAGAAGACA+CGG | - | chr3.3:69478467-69478486 | MS.gene25690:intron | 35.0% | |
| AATATCGAGAAGAAACCAAG+TGG | + | chr3.3:69478516-69478535 | None:intergenic | 35.0% | |
| AATGTATCAGCAGCAGTAAA+TGG | - | chr3.3:69477673-69477692 | MS.gene25690:CDS | 35.0% | |
| ACCGAGCTACTTATCTATAT+AGG | - | chr3.3:69478306-69478325 | MS.gene25690:intron | 35.0% | |
| ATCCAAAAAAGAGAGATGCA+GGG | - | chr3.3:69479008-69479027 | MS.gene25690:CDS | 35.0% | |
| ATTGCATTCATATCTTGTGC+CGG | + | chr3.3:69478599-69478618 | None:intergenic | 35.0% | |
| CAATAGTAAGTTAAACCAGC+AGG | + | chr3.3:69478147-69478166 | None:intergenic | 35.0% | |
| CAATTATGATGGCTGTGAAA+TGG | + | chr3.3:69477534-69477553 | None:intergenic | 35.0% | |
| GACATAATAGTAGCTGAAAG+AGG | + | chr3.3:69477910-69477929 | None:intergenic | 35.0% | |
| TACCAGAAGCTGATTATGTT+TGG | - | chr3.3:69478094-69478113 | MS.gene25690:CDS | 35.0% | |
| TATGCTAACAAAAAGACTCG+TGG | - | chr3.3:69477934-69477953 | MS.gene25690:CDS | 35.0% | |
| TGACATTTGGTATGCAGAAA+AGG | + | chr3.3:69477588-69477607 | None:intergenic | 35.0% | |
| TGGAGAATCATTCTCATGTT+TGG | - | chr3.3:69478114-69478133 | MS.gene25690:CDS | 35.0% | |
| TTTACTGCTGCTGATACATT+TGG | + | chr3.3:69477673-69477692 | None:intergenic | 35.0% | |
| ! | AAAAGTTTACCTTGCTGTCT+CGG | + | chr3.3:69478184-69478203 | None:intergenic | 35.0% |
| ! | GAAATGGTACCATTGTGTTT+TGG | + | chr3.3:69477518-69477537 | None:intergenic | 35.0% |
| ! | GTGGCTTTTATCGATGTTAT+TGG | - | chr3.3:69478695-69478714 | MS.gene25690:intron | 35.0% |
| !! | CTGCTGGTTTAACTTACTAT+TGG | - | chr3.3:69478145-69478164 | MS.gene25690:CDS | 35.0% |
| !! | TATGCAAGGGTTTGGAATTT+TGG | - | chr3.3:69477981-69478000 | MS.gene25690:CDS | 35.0% |
| !! | TTTTGGCTAGGTTTTGGTAT+TGG | - | chr3.3:69477874-69477893 | MS.gene25690:CDS | 35.0% |
| !!! | AACTTTTCTTTGGTTGGCTT+GGG | - | chr3.3:69477725-69477744 | MS.gene25690:CDS | 35.0% |
| ACAACGCTTATAGCACTTTG+TGG | - | chr3.3:69478647-69478666 | MS.gene25690:intron | 40.0% | |
| AGAATATACTACACACACCC+AGG | - | chr3.3:69477622-69477641 | MS.gene25690:CDS | 40.0% | |
| AGCCATCATAATTGCTGGTA+TGG | - | chr3.3:69477540-69477559 | MS.gene25690:CDS | 40.0% | |
| ATCAACAAGCCTCCTCTAAT+AGG | - | chr3.3:69479191-69479210 | MS.gene25690:CDS | 40.0% | |
| CAAGCCAACCAAAGAAAAGT+TGG | + | chr3.3:69477726-69477745 | None:intergenic | 40.0% | |
| CCAAATGTCACCAAGTTACT+TGG | - | chr3.3:69477598-69477617 | MS.gene25690:CDS | 40.0% | |
| CTCCAAACATAATCAGCTTC+TGG | + | chr3.3:69478099-69478118 | None:intergenic | 40.0% | |
| CTTGTATGCTTCACAAAGCA+AGG | - | chr3.3:69478985-69479004 | MS.gene25690:CDS | 40.0% | |
| GATCCAAAAAAGAGAGATGC+AGG | - | chr3.3:69479007-69479026 | MS.gene25690:CDS | 40.0% | |
| GCCATCATAATTGCTGGTAT+GGG | - | chr3.3:69477541-69477560 | MS.gene25690:CDS | 40.0% | |
| GGAGCTATTATAGGTGCATT+TGG | - | chr3.3:69478959-69478978 | MS.gene25690:CDS | 40.0% | |
| TCCCATACCAGCAATTATGA+TGG | + | chr3.3:69477545-69477564 | None:intergenic | 40.0% | |
| TCGCTATTCCGTATGATCAT+TGG | - | chr3.3:69478774-69478793 | MS.gene25690:intron | 40.0% | |
| TCTTCATTCCAATACCAGCA+GGG | + | chr3.3:69479036-69479055 | None:intergenic | 40.0% | |
| TGGTCTAACTCTTGCTCTTA+TGG | - | chr3.3:69477774-69477793 | MS.gene25690:CDS | 40.0% | |
| TTCACAGCCATCATAATTGC+TGG | - | chr3.3:69477535-69477554 | MS.gene25690:CDS | 40.0% | |
| TTCTTCATTCCAATACCAGC+AGG | + | chr3.3:69479037-69479056 | None:intergenic | 40.0% | |
| TTGATGCAGCCAAAACACAA+TGG | - | chr3.3:69477506-69477525 | MS.gene25690:CDS | 40.0% | |
| TTGCTGAGTGACCAAAAGAA+AGG | + | chr3.3:69477822-69477841 | None:intergenic | 40.0% | |
| TTTCTTGTGCCAGAAGCTAA+TGG | - | chr3.3:69479106-69479125 | MS.gene25690:CDS | 40.0% | |
| ! | AAAGTTTACCTTGCTGTCTC+GGG | + | chr3.3:69478183-69478202 | None:intergenic | 40.0% |
| ! | CCAAGTAACTTGGTGACATT+TGG | + | chr3.3:69477601-69477620 | None:intergenic | 40.0% |
| ! | CTTGCTGTGGTTAATTGTCT+TGG | - | chr3.3:69479070-69479089 | MS.gene25690:CDS | 40.0% |
| ! | GTGCAAGACAAGAACAGTTT+TGG | - | chr3.3:69478434-69478453 | MS.gene25690:intron | 40.0% |
| ! | TCTTTTGGTCACTCAGCAAA+GGG | - | chr3.3:69477823-69477842 | MS.gene25690:CDS | 40.0% |
| ! | TTCTTTTGGTCACTCAGCAA+AGG | - | chr3.3:69477822-69477841 | MS.gene25690:CDS | 40.0% |
| !! | CAACTTTTCTTTGGTTGGCT+TGG | - | chr3.3:69477724-69477743 | MS.gene25690:CDS | 40.0% |
| !! | CTTCGGTTTTTGCTATGCAA+GGG | - | chr3.3:69477968-69477987 | MS.gene25690:CDS | 40.0% |
| !! | GTAAATGGTGTTGCTCTTTG+TGG | - | chr3.3:69477688-69477707 | MS.gene25690:CDS | 40.0% |
| !! | GTTTTTGCTATGCAAGGGTT+TGG | - | chr3.3:69477973-69477992 | MS.gene25690:CDS | 40.0% |
| !!! | ACTTTTCTTTGGTTGGCTTG+GGG | - | chr3.3:69477726-69477745 | MS.gene25690:CDS | 40.0% |
| !!! | ATTGTGTTTTGGCTGCATCA+AGG | + | chr3.3:69477507-69477526 | None:intergenic | 40.0% |
| !!! | CACTCTTATTTTGCTTGCTG+TGG | - | chr3.3:69479057-69479076 | MS.gene25690:CDS | 40.0% |
| !!! | TACCCTGCATCTCTCTTTTT+TGG | + | chr3.3:69479013-69479032 | None:intergenic | 40.0% |
| !!! | TTGTGTTTTGGCTGCATCAA+GGG | + | chr3.3:69477506-69477525 | None:intergenic | 40.0% |
| AAAATCCAGCGTTCGAACTC+TGG | + | chr3.3:69478250-69478269 | None:intergenic | 45.0% | |
| ACATTTGGAGGCAAAGTTCC+AGG | + | chr3.3:69477658-69477677 | None:intergenic | 45.0% | |
| ACTGCTGCTGATACATTTGG+AGG | + | chr3.3:69477670-69477689 | None:intergenic | 45.0% | |
| AGCACTTTGTGGAACTGTTC+CGG | - | chr3.3:69478658-69478677 | MS.gene25690:intron | 45.0% | |
| AGGAACAGTCCTATTAGAGG+AGG | + | chr3.3:69479203-69479222 | None:intergenic | 45.0% | |
| AGGTTGAGGTCTACATGTCA+TGG | - | chr3.3:69478911-69478930 | MS.gene25690:CDS | 45.0% | |
| ATGGTATATCCTCTGCAGCA+GGG | - | chr3.3:69478930-69478949 | MS.gene25690:CDS | 45.0% | |
| CACAGGAACAGTCCTATTAG+AGG | + | chr3.3:69479206-69479225 | None:intergenic | 45.0% | |
| GCAGCGTCAACTTTATAAGG+CGG | + | chr3.3:69478063-69478082 | None:intergenic | 45.0% | |
| GCTGCAGCGTCAACTTTATA+AGG | + | chr3.3:69478066-69478085 | None:intergenic | 45.0% | |
| GGGAAAGCTGGAGCTATTAT+AGG | - | chr3.3:69478950-69478969 | MS.gene25690:CDS | 45.0% | |
| GTATTCTCCTCTCTTGCTTC+TGG | - | chr3.3:69477796-69477815 | MS.gene25690:CDS | 45.0% | |
| TAGCTCGGTTAGTGAGTGAA+AGG | + | chr3.3:69478295-69478314 | None:intergenic | 45.0% | |
| TGCTTGGAACAACTTCCACT+TGG | - | chr3.3:69478498-69478517 | MS.gene25690:intron | 45.0% | |
| ! | CACTCAGCAAAGGGTACAAT+TGG | - | chr3.3:69477832-69477851 | MS.gene25690:CDS | 45.0% |
| ! | CAGGCCAACTTTTCTTTGGT+TGG | - | chr3.3:69477719-69477738 | MS.gene25690:CDS | 45.0% |
| ! | CTAGCAGGCCAACTTTTCTT+TGG | - | chr3.3:69477715-69477734 | MS.gene25690:CDS | 45.0% |
| !! | CAAGGGTTTGGAATTTTGGC+TGG | - | chr3.3:69477985-69478004 | MS.gene25690:CDS | 45.0% |
| !! | CTTGCTTCTGGCCTTTCTTT+TGG | - | chr3.3:69477808-69477827 | MS.gene25690:CDS | 45.0% |
| !! | GCTTCGGTTTTTGCTATGCA+AGG | - | chr3.3:69477967-69477986 | MS.gene25690:CDS | 45.0% |
| !! | TAGTATTGGTTGGCTTCCAC+CGG | - | chr3.3:69478577-69478596 | MS.gene25690:intron | 45.0% |
| !! | TGGCTAGGTTTTGGTATTGG+TGG | - | chr3.3:69477877-69477896 | MS.gene25690:CDS | 45.0% |
| AGAAAGGCCAGAAGCAAGAG+AGG | + | chr3.3:69477806-69477825 | None:intergenic | 50.0% | |
| AGACACGGTCTTCATCTGCT+TGG | - | chr3.3:69478482-69478501 | MS.gene25690:intron | 50.0% | |
| AGTTTCCAGAGTTCGAACGC+TGG | - | chr3.3:69478242-69478261 | MS.gene25690:CDS | 50.0% | |
| ATGTAGACCTCAACCTAGCC+GGG | + | chr3.3:69478907-69478926 | None:intergenic | 50.0% | |
| CAACCTAGCCGGGAAAATCT+CGG | + | chr3.3:69478897-69478916 | None:intergenic | 50.0% | |
| CATGGTATATCCTCTGCAGC+AGG | - | chr3.3:69478929-69478948 | MS.gene25690:CDS | 50.0% | |
| CATGTAGACCTCAACCTAGC+CGG | + | chr3.3:69478908-69478927 | None:intergenic | 50.0% | |
| GAATGCAAAACAAGCAGCGC+AGG | - | chr3.3:69478349-69478368 | MS.gene25690:intron | 50.0% | |
| GCACTTTGTGGAACTGTTCC+GGG | - | chr3.3:69478659-69478678 | MS.gene25690:intron | 50.0% | |
| GCATTCATATCTTGTGCCGG+TGG | + | chr3.3:69478596-69478615 | None:intergenic | 50.0% | |
| GGACATGTCAAGTGTGTTGC+AGG | - | chr3.3:69478370-69478389 | MS.gene25690:intron | 50.0% | |
| TCGTGGCGCGTTTATAGCTT+CGG | - | chr3.3:69477951-69477970 | MS.gene25690:CDS | 50.0% | |
| TGAAAATGCCCGAGACAGCA+AGG | - | chr3.3:69478172-69478191 | MS.gene25690:CDS | 50.0% | |
| ! | AGATTTTCCCGGCTAGGTTG+AGG | - | chr3.3:69478897-69478916 | MS.gene25690:intron | 50.0% |
| !! | GGTTGGCTTGGGGACAAAAT+GGG | - | chr3.3:69477736-69477755 | MS.gene25690:CDS | 50.0% |
| !! | TGGTTGGCTTGGGGACAAAA+TGG | - | chr3.3:69477735-69477754 | MS.gene25690:CDS | 50.0% |
| !! | TGTTCCGGGATACTGGTTCA+CGG | - | chr3.3:69478673-69478692 | MS.gene25690:intron | 50.0% |
| !!! | GGGTTTGGAATTTTGGCTGG+TGG | - | chr3.3:69477988-69478007 | MS.gene25690:CDS | 50.0% |
| ATGTTTGGCGCTGTTCCTGC+TGG | - | chr3.3:69478129-69478148 | MS.gene25690:CDS | 55.0% | |
| CTCGGCAGGCACAACAAAAG+TGG | + | chr3.3:69478879-69478898 | None:intergenic | 55.0% | |
| GCTCTTTGTGGCACTCTAGC+AGG | - | chr3.3:69477700-69477719 | MS.gene25690:CDS | 55.0% | |
| GTGGAACTGTTCCGGGATAC+TGG | - | chr3.3:69478666-69478685 | MS.gene25690:intron | 55.0% | |
| TTCCAGGCTTGAGTGCACCT+GGG | + | chr3.3:69477642-69477661 | None:intergenic | 55.0% | |
| ! | TGTGCCTGCCGAGATTTTCC+CGG | - | chr3.3:69478886-69478905 | MS.gene25690:intron | 55.0% |
| CTAGCCGGGAAAATCTCGGC+AGG | + | chr3.3:69478893-69478912 | None:intergenic | 60.0% | |
| GCCACCGTGAACCAGTATCC+CGG | + | chr3.3:69478680-69478699 | None:intergenic | 60.0% | |
| GTTCCAGGCTTGAGTGCACC+TGG | + | chr3.3:69477643-69477662 | None:intergenic | 60.0% | |
| TCCAGCTTTCCCTGCTGCAG+AGG | + | chr3.3:69478942-69478961 | None:intergenic | 60.0% | |
| TCCTCTGCAGCAGGGAAAGC+TGG | - | chr3.3:69478938-69478957 | MS.gene25690:CDS | 60.0% | |
| ! | AGAGATGCAGGGTACCCTGC+TGG | - | chr3.3:69479019-69479038 | MS.gene25690:CDS | 60.0% |
| ! | CTGCCGAGATTTTCCCGGCT+AGG | - | chr3.3:69478891-69478910 | MS.gene25690:intron | 60.0% |
| ! | GCAGGGTACCCTGCTGGTAT+TGG | - | chr3.3:69479025-69479044 | MS.gene25690:CDS | 60.0% |
| !! | TCCGGGATACTGGTTCACGG+TGG | - | chr3.3:69478676-69478695 | MS.gene25690:intron | 60.0% |
| CACCCAGGTGCACTCAAGCC+TGG | - | chr3.3:69477637-69477656 | MS.gene25690:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 69477472 | 69479228 | 69477472 | ID=MS.gene25690 |
| chr3.3 | mRNA | 69477472 | 69479228 | 69477472 | ID=MS.gene25690.t1;Parent=MS.gene25690 |
| chr3.3 | exon | 69478905 | 69479228 | 69478905 | ID=MS.gene25690.t1.exon1;Parent=MS.gene25690.t1 |
| chr3.3 | CDS | 69478905 | 69479228 | 69478905 | ID=cds.MS.gene25690.t1;Parent=MS.gene25690.t1 |
| chr3.3 | exon | 69477472 | 69478308 | 69477472 | ID=MS.gene25690.t1.exon2;Parent=MS.gene25690.t1 |
| chr3.3 | CDS | 69477472 | 69478308 | 69477472 | ID=cds.MS.gene25690.t1;Parent=MS.gene25690.t1 |
| Gene Sequence |
| Protein sequence |
