Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25691.t1 | XP_003601529.1 | 81.5 | 541 | 5 | 2 | 1 | 446 | 1 | 541 | 5.20E-239 | 836.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25691.t1 | Q8GYF4 | 63.8 | 542 | 100 | 2 | 1 | 446 | 1 | 542 | 1.5e-189 | 663.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25691.t1 | B2G3Q0 | 81.5 | 541 | 5 | 2 | 1 | 446 | 1 | 541 | 3.8e-239 | 836.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050645 | MS.gene25691 | 0.830281 | 3.21E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25691.t1 | MTR_3g082700 | 99.123 | 228 | 2 | 0 | 1 | 228 | 1 | 228 | 2.70e-159 | 461 |
| MS.gene25691.t1 | MTR_3g082700 | 98.190 | 221 | 3 | 1 | 227 | 446 | 321 | 541 | 2.29e-153 | 446 |
| MS.gene25691.t1 | MTR_1g074930 | 78.636 | 220 | 45 | 1 | 227 | 446 | 321 | 538 | 6.63e-124 | 370 |
| MS.gene25691.t1 | MTR_1g074930 | 79.372 | 223 | 45 | 1 | 5 | 226 | 4 | 226 | 7.17e-119 | 358 |
| MS.gene25691.t1 | MTR_1g069935 | 73.469 | 245 | 64 | 1 | 1 | 244 | 1 | 245 | 2.34e-123 | 369 |
| MS.gene25691.t1 | MTR_1g069935 | 78.607 | 201 | 43 | 0 | 227 | 427 | 318 | 518 | 3.94e-113 | 342 |
| MS.gene25691.t1 | MTR_7g096870 | 76.106 | 226 | 54 | 0 | 1 | 226 | 1 | 226 | 5.19e-122 | 366 |
| MS.gene25691.t1 | MTR_7g096870 | 74.886 | 219 | 54 | 1 | 227 | 444 | 318 | 536 | 5.44e-107 | 327 |
| MS.gene25691.t1 | MTR_1g074940 | 75.664 | 226 | 54 | 1 | 1 | 226 | 1 | 225 | 8.76e-118 | 354 |
| MS.gene25691.t1 | MTR_1g074940 | 70.681 | 191 | 43 | 1 | 227 | 417 | 323 | 500 | 8.22e-90 | 282 |
| MS.gene25691.t1 | MTR_1g043200 | 77.333 | 225 | 50 | 1 | 5 | 228 | 4 | 228 | 9.93e-118 | 355 |
| MS.gene25691.t1 | MTR_1g043200 | 78.922 | 204 | 43 | 0 | 227 | 430 | 321 | 524 | 2.07e-117 | 354 |
| MS.gene25691.t1 | MTR_1g043220 | 79.024 | 205 | 43 | 0 | 227 | 431 | 321 | 525 | 1.72e-117 | 354 |
| MS.gene25691.t1 | MTR_1g043220 | 76.444 | 225 | 52 | 1 | 5 | 228 | 4 | 228 | 5.97e-117 | 353 |
| MS.gene25691.t1 | MTR_1g043290 | 76.526 | 213 | 48 | 1 | 227 | 439 | 321 | 531 | 2.80e-117 | 353 |
| MS.gene25691.t1 | MTR_1g043290 | 76.444 | 225 | 52 | 1 | 5 | 228 | 4 | 228 | 1.20e-116 | 352 |
| MS.gene25691.t1 | MTR_1g069930 | 67.176 | 262 | 76 | 3 | 1 | 252 | 1 | 262 | 3.39e-117 | 353 |
| MS.gene25691.t1 | MTR_1g069930 | 67.593 | 216 | 69 | 1 | 227 | 442 | 319 | 533 | 2.18e-99 | 308 |
| MS.gene25691.t1 | MTR_7g096880 | 77.434 | 226 | 51 | 0 | 1 | 226 | 1 | 226 | 1.57e-114 | 347 |
| MS.gene25691.t1 | MTR_7g096880 | 76.606 | 218 | 51 | 0 | 227 | 444 | 316 | 533 | 6.70e-110 | 335 |
| MS.gene25691.t1 | MTR_1g028600 | 69.231 | 221 | 68 | 0 | 6 | 226 | 3 | 223 | 6.17e-103 | 317 |
| MS.gene25691.t1 | MTR_1g028600 | 49.537 | 216 | 98 | 2 | 227 | 442 | 316 | 520 | 2.22e-58 | 200 |
| MS.gene25691.t1 | MTR_5g068140 | 69.545 | 220 | 67 | 0 | 7 | 226 | 6 | 225 | 7.92e-102 | 315 |
| MS.gene25691.t1 | MTR_5g068140 | 50.000 | 232 | 90 | 4 | 227 | 443 | 321 | 541 | 6.75e-62 | 210 |
| MS.gene25691.t1 | MTR_4g083960 | 57.269 | 227 | 88 | 4 | 1 | 226 | 1 | 219 | 7.27e-68 | 225 |
| MS.gene25691.t1 | MTR_4g083960 | 54.028 | 211 | 83 | 6 | 226 | 432 | 312 | 512 | 9.44e-66 | 219 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25691.t1 | AT2G32830 | 81.416 | 226 | 42 | 0 | 1 | 226 | 1 | 226 | 8.95e-127 | 378 |
| MS.gene25691.t1 | AT2G32830 | 73.303 | 221 | 58 | 1 | 227 | 446 | 322 | 542 | 2.00e-115 | 349 |
| MS.gene25691.t1 | AT3G54700 | 75.102 | 245 | 60 | 1 | 1 | 244 | 1 | 245 | 2.91e-124 | 372 |
| MS.gene25691.t1 | AT3G54700 | 78.218 | 202 | 44 | 0 | 227 | 428 | 317 | 518 | 5.78e-114 | 345 |
| MS.gene25691.t1 | AT3G54700 | 75.102 | 245 | 60 | 1 | 1 | 244 | 1 | 245 | 2.91e-124 | 372 |
| MS.gene25691.t1 | AT3G54700 | 78.218 | 202 | 44 | 0 | 227 | 428 | 317 | 518 | 5.78e-114 | 345 |
| MS.gene25691.t1 | AT2G38940 | 73.469 | 245 | 64 | 1 | 1 | 244 | 1 | 245 | 1.59e-123 | 370 |
| MS.gene25691.t1 | AT2G38940 | 79.592 | 196 | 40 | 0 | 227 | 422 | 321 | 516 | 8.40e-112 | 339 |
| MS.gene25691.t1 | AT5G43350 | 77.434 | 226 | 51 | 0 | 1 | 226 | 1 | 226 | 4.27e-122 | 365 |
| MS.gene25691.t1 | AT5G43350 | 75.000 | 204 | 51 | 0 | 227 | 430 | 320 | 523 | 3.94e-108 | 330 |
| MS.gene25691.t1 | AT5G43370 | 76.991 | 226 | 52 | 0 | 1 | 226 | 1 | 226 | 8.93e-121 | 362 |
| MS.gene25691.t1 | AT5G43370 | 75.000 | 204 | 51 | 0 | 227 | 430 | 320 | 523 | 4.57e-96 | 298 |
| MS.gene25691.t1 | AT5G43370 | 76.991 | 226 | 52 | 0 | 1 | 226 | 1 | 226 | 8.93e-121 | 362 |
| MS.gene25691.t1 | AT5G43370 | 75.000 | 204 | 51 | 0 | 227 | 430 | 320 | 523 | 4.57e-96 | 298 |
| MS.gene25691.t1 | AT5G43360 | 76.106 | 226 | 54 | 0 | 1 | 226 | 1 | 226 | 2.89e-119 | 358 |
| MS.gene25691.t1 | AT5G43360 | 75.743 | 202 | 49 | 0 | 227 | 428 | 320 | 521 | 4.71e-109 | 332 |
| MS.gene25691.t1 | AT5G43340 | 67.401 | 227 | 73 | 1 | 1 | 226 | 1 | 227 | 5.33e-103 | 316 |
| MS.gene25691.t1 | AT5G43340 | 57.692 | 208 | 75 | 1 | 227 | 434 | 321 | 515 | 3.34e-82 | 263 |
| MS.gene25691.t1 | AT4G08878 | 69.388 | 196 | 60 | 0 | 31 | 226 | 13 | 208 | 2.37e-88 | 271 |
| MS.gene25691.t1 | AT1G76430 | 53.982 | 226 | 94 | 4 | 5 | 226 | 3 | 222 | 3.24e-71 | 234 |
| MS.gene25691.t1 | AT1G76430 | 47.938 | 194 | 90 | 5 | 237 | 427 | 328 | 513 | 2.13e-51 | 182 |
| MS.gene25691.t1 | AT1G20860 | 53.153 | 222 | 93 | 4 | 6 | 226 | 3 | 214 | 1.57e-67 | 224 |
| MS.gene25691.t1 | AT1G20860 | 48.095 | 210 | 103 | 4 | 236 | 439 | 317 | 526 | 3.60e-57 | 197 |
| MS.gene25691.t1 | AT1G20860 | 53.153 | 222 | 93 | 4 | 6 | 226 | 55 | 266 | 3.16e-67 | 225 |
| MS.gene25691.t1 | AT1G20860 | 48.325 | 209 | 102 | 4 | 237 | 439 | 370 | 578 | 9.31e-57 | 197 |
| MS.gene25691.t1 | AT4G08895 | 50.350 | 143 | 39 | 1 | 224 | 366 | 20 | 130 | 1.13e-43 | 150 |
Find 82 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTGTTTCTTTAGATTT+TGG | 0.112713 | 3.3:-69465567 | MS.gene25691:CDS |
| TGGTCTAACTCTTGCTCTTA+TGG | 0.192232 | 3.3:-69465650 | MS.gene25691:CDS |
| TATGCAAGGGTTTGGAATTT+TGG | 0.193186 | 3.3:-69465443 | MS.gene25691:CDS |
| CTTGCTTCTGGCCTTTCTTT+TGG | 0.201610 | 3.3:-69465616 | MS.gene25691:CDS |
| ACAACAAAAGTGGTTGAATT+TGG | 0.258019 | 3.3:+69464557 | None:intergenic |
| TGGTTGGCTTGGGGACAAAA+TGG | 0.266103 | 3.3:-69465689 | MS.gene25691:CDS |
| GTATTCTCCTCTCTTGCTTC+TGG | 0.282043 | 3.3:-69465628 | MS.gene25691:CDS |
| AGCACTTTGTGGAACTGTTC+CGG | 0.298632 | 3.3:-69464765 | MS.gene25691:CDS |
| TACCAGAAGCTGATTATGTT+TGG | 0.328852 | 3.3:-69465330 | MS.gene25691:CDS |
| GTGGAACTGTTCCGGGATAC+TGG | 0.329105 | 3.3:-69464757 | MS.gene25691:CDS |
| TGGAGAATCATTCTCATGTT+TGG | 0.337056 | 3.3:-69465310 | MS.gene25691:CDS |
| GGAGCTATTATAGGTGCATT+TGG | 0.340643 | 3.3:-69464464 | MS.gene25691:CDS |
| CCAAGTAACTTGGTGACATT+TGG | 0.341844 | 3.3:+69465826 | None:intergenic |
| GCACTTTGTGGAACTGTTCC+GGG | 0.351063 | 3.3:-69464764 | MS.gene25691:CDS |
| CTCCAAACATAATCAGCTTC+TGG | 0.355251 | 3.3:+69465328 | None:intergenic |
| TTTACTGCTGCTGATACATT+TGG | 0.358950 | 3.3:+69465754 | None:intergenic |
| GGGAAAGCTGGAGCTATTAT+AGG | 0.362181 | 3.3:-69464473 | MS.gene25691:CDS |
| GCTGCAGCGTCAACTTTATA+AGG | 0.364153 | 3.3:+69465361 | None:intergenic |
| ACTAAAAGAGAAAACAGAAT+TGG | 0.370784 | 3.3:-69464626 | MS.gene25691:CDS |
| ACATTTGGAGGCAAAGTTCC+AGG | 0.372446 | 3.3:+69465769 | None:intergenic |
| CCAAATGTCACCAAGTTACT+TGG | 0.375080 | 3.3:-69465826 | MS.gene25691:CDS |
| TTTCTTGTGCCAGAAGCTAA+TGG | 0.378357 | 3.3:-69464317 | MS.gene25691:CDS |
| CTTGCTGTGGTTAATTGTCT+TGG | 0.380235 | 3.3:-69464353 | MS.gene25691:CDS |
| CACTCAGCAAAGGGTACAAT+TGG | 0.385896 | 3.3:-69465592 | MS.gene25691:CDS |
| AAAGATATTTATAGTAGTAT+TGG | 0.386205 | 3.3:-69464860 | MS.gene25691:intron |
| GCAGGGTACCCTGCTGGTAT+TGG | 0.388751 | 3.3:-69464398 | MS.gene25691:CDS |
| ATCAACAAGCCTCCTCTAAT+AGG | 0.388915 | 3.3:-69464232 | MS.gene25691:CDS |
| GAAATGGTACCATTGTGTTT+TGG | 0.389577 | 3.3:+69465909 | None:intergenic |
| TTCACAGCCATCATAATTGC+TGG | 0.392806 | 3.3:-69465889 | MS.gene25691:CDS |
| AATGTATCAGCAGCAGTAAA+TGG | 0.399626 | 3.3:-69465751 | MS.gene25691:CDS |
| TCCTCTGCAGCAGGGAAAGC+TGG | 0.401210 | 3.3:-69464485 | MS.gene25691:CDS |
| AGCCATCATAATTGCTGGTA+TGG | 0.413402 | 3.3:-69465884 | MS.gene25691:CDS |
| GCTCTTTGTGGCACTCTAGC+AGG | 0.420937 | 3.3:-69465724 | MS.gene25691:CDS |
| AGAAGCTAATGGAAAATCAT+TGG | 0.433339 | 3.3:-69464306 | MS.gene25691:CDS |
| TCGTGGCGCGTTTATAGCTT+CGG | 0.447395 | 3.3:-69465473 | MS.gene25691:CDS |
| ATGTTTGGCGCTGTTCCTGC+TGG | 0.448854 | 3.3:-69465295 | MS.gene25691:intron |
| TGACATTTGGTATGCAGAAA+AGG | 0.456001 | 3.3:+69465839 | None:intergenic |
| GGTTGGCTTGGGGACAAAAT+GGG | 0.456779 | 3.3:-69465688 | MS.gene25691:CDS |
| GTAAATGGTGTTGCTCTTTG+TGG | 0.464585 | 3.3:-69465736 | MS.gene25691:CDS |
| GTTCCAGGCTTGAGTGCACC+TGG | 0.466167 | 3.3:+69465784 | None:intergenic |
| ACAACGCTTATAGCACTTTG+TGG | 0.467494 | 3.3:-69464776 | MS.gene25691:CDS |
| TTCTTCATTCCAATACCAGC+AGG | 0.476749 | 3.3:+69464389 | None:intergenic |
| ACTGCTGCTGATACATTTGG+AGG | 0.480011 | 3.3:+69465757 | None:intergenic |
| CACCCAGGTGCACTCAAGCC+TGG | 0.480902 | 3.3:-69465787 | MS.gene25691:CDS |
| CACAGGAACAGTCCTATTAG+AGG | 0.487695 | 3.3:+69464220 | None:intergenic |
| CAAGCCAACCAAAGAAAAGT+TGG | 0.491977 | 3.3:+69465701 | None:intergenic |
| TCGCTATTCCGTATGATCAT+TGG | 0.501987 | 3.3:-69464649 | MS.gene25691:CDS |
| CATGGTATATCCTCTGCAGC+AGG | 0.519226 | 3.3:-69464494 | MS.gene25691:CDS |
| TAGTATTGGTTGGCTTCCAC+CGG | 0.519880 | 3.3:-69464846 | MS.gene25691:CDS |
| CTTGTATGCTTCACAAAGCA+AGG | 0.520337 | 3.3:-69464438 | MS.gene25691:CDS |
| AGAAAGGCCAGAAGCAAGAG+AGG | 0.521035 | 3.3:+69465621 | None:intergenic |
| CAATTATGATGGCTGTGAAA+TGG | 0.521173 | 3.3:+69465893 | None:intergenic |
| GTATATTCTTCCAAGTAACT+TGG | 0.522891 | 3.3:+69465816 | None:intergenic |
| GACATAATAGTAGCTGAAAG+AGG | 0.523195 | 3.3:+69465517 | None:intergenic |
| CATGTAGACCTCAACCTAGC+CGG | 0.533609 | 3.3:+69464518 | None:intergenic |
| GCCATCATAATTGCTGGTAT+GGG | 0.536058 | 3.3:-69465883 | MS.gene25691:CDS |
| TTGCTGAGTGACCAAAAGAA+AGG | 0.540760 | 3.3:+69465605 | None:intergenic |
| ATGTAGACCTCAACCTAGCC+GGG | 0.545552 | 3.3:+69464519 | None:intergenic |
| AGAGATGCAGGGTACCCTGC+TGG | 0.548047 | 3.3:-69464404 | MS.gene25691:CDS |
| ATATTTATAGTAGTATTGGT+TGG | 0.553131 | 3.3:-69464856 | MS.gene25691:CDS |
| TCCCATACCAGCAATTATGA+TGG | 0.555478 | 3.3:+69465882 | None:intergenic |
| CTCGGCAGGCACAACAAAAG+TGG | 0.561882 | 3.3:+69464547 | None:intergenic |
| GCCACCGTGAACCAGTATCC+CGG | 0.570413 | 3.3:+69464746 | None:intergenic |
| TGTTCCGGGATACTGGTTCA+CGG | 0.578109 | 3.3:-69464750 | MS.gene25691:CDS |
| CTAGCCGGGAAAATCTCGGC+AGG | 0.590971 | 3.3:+69464533 | None:intergenic |
| CAACCTAGCCGGGAAAATCT+CGG | 0.596897 | 3.3:+69464529 | None:intergenic |
| AGGTTGAGGTCTACATGTCA+TGG | 0.608393 | 3.3:-69464512 | MS.gene25691:CDS |
| TCCAGCTTTCCCTGCTGCAG+AGG | 0.609930 | 3.3:+69464484 | None:intergenic |
| ACATAATAGTAGCTGAAAGA+GGG | 0.611460 | 3.3:+69465518 | None:intergenic |
| ATTGCATTCATATCTTGTGC+CGG | 0.613095 | 3.3:+69464827 | None:intergenic |
| AAATCATTGGAAGAAATGAG+TGG | 0.620125 | 3.3:-69464293 | MS.gene25691:CDS |
| GCATTCATATCTTGTGCCGG+TGG | 0.633100 | 3.3:+69464830 | None:intergenic |
| ATGGTATATCCTCTGCAGCA+GGG | 0.647894 | 3.3:-69464493 | MS.gene25691:CDS |
| TTCCAGGCTTGAGTGCACCT+GGG | 0.648892 | 3.3:+69465785 | None:intergenic |
| GCAGCGTCAACTTTATAAGG+CGG | 0.662919 | 3.3:+69465364 | None:intergenic |
| ATCATGGCTCGTGAACAACT+AGG | 0.672656 | 3.3:-69465955 | MS.gene25691:CDS |
| AGGAACAGTCCTATTAGAGG+AGG | 0.680131 | 3.3:+69464223 | None:intergenic |
| AGAATATACTACACACACCC+AGG | 0.681223 | 3.3:-69465802 | MS.gene25691:CDS |
| TCTTCATTCCAATACCAGCA+GGG | 0.696508 | 3.3:+69464390 | None:intergenic |
| TTGATGCAGCCAAAACACAA+TGG | 0.702246 | 3.3:-69465918 | MS.gene25691:CDS |
| GTAATAGTAATACATCACAC+AGG | 0.741588 | 3.3:+69464203 | None:intergenic |
| TCCGGGATACTGGTTCACGG+TGG | 0.750080 | 3.3:-69464747 | MS.gene25691:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATATTTATAGTAGTAT+TGG | - | chr3.3:69465309-69465328 | MS.gene25691:CDS | 15.0% |
| !!! | ACTTTTTTCTTTGCAAATTT+TGG | - | chr3.3:69465588-69465607 | MS.gene25691:CDS | 20.0% |
| !!! | ATATTTATAGTAGTATTGGT+TGG | - | chr3.3:69465313-69465332 | MS.gene25691:CDS | 20.0% |
| ! | ACTAAAAGAGAAAACAGAAT+TGG | - | chr3.3:69465543-69465562 | MS.gene25691:CDS | 25.0% |
| ! | ACTACTAAATCACTAACATT+TGG | + | chr3.3:69464962-69464981 | None:intergenic | 25.0% |
| ! | ATGGGAAGAAAAAAAGTTTA+TGG | - | chr3.3:69464499-69464518 | MS.gene25691:CDS | 25.0% |
| !!! | CTCTTTGTTTCTTTAGATTT+TGG | - | chr3.3:69464602-69464621 | MS.gene25691:CDS | 25.0% |
| AAATCATTGGAAGAAATGAG+TGG | - | chr3.3:69465876-69465895 | MS.gene25691:CDS | 30.0% | |
| ACAACAAAAGTGGTTGAATT+TGG | + | chr3.3:69465615-69465634 | None:intergenic | 30.0% | |
| ACATAATAGTAGCTGAAAGA+GGG | + | chr3.3:69464654-69464673 | None:intergenic | 30.0% | |
| ACCTATATAGATAAGTAGCT+CGG | + | chr3.3:69465056-69465075 | None:intergenic | 30.0% | |
| AGAAGCTAATGGAAAATCAT+TGG | - | chr3.3:69465863-69465882 | MS.gene25691:CDS | 30.0% | |
| CAAGAAAAAGTAGACAAGAT+AGG | - | chr3.3:69465156-69465175 | MS.gene25691:intron | 30.0% | |
| GTATATTCTTCCAAGTAACT+TGG | + | chr3.3:69464356-69464375 | None:intergenic | 30.0% | |
| ! | CGTTTTGCAATTCAACTAAT+GGG | - | chr3.3:69465465-69465484 | MS.gene25691:CDS | 30.0% |
| ! | CTTTTAGTCCAATGATCATA+CGG | + | chr3.3:69465531-69465550 | None:intergenic | 30.0% |
| ! | TCGTTTTGCAATTCAACTAA+TGG | - | chr3.3:69465464-69465483 | MS.gene25691:CDS | 30.0% |
| ! | TGCTTTTGATCATGCTTTTA+AGG | - | chr3.3:69464780-69464799 | MS.gene25691:CDS | 30.0% |
| !! | AATGATTTTCCATTAGCTTC+TGG | + | chr3.3:69465864-69465883 | None:intergenic | 30.0% |
| !!! | CAGTTTTGGTTTGTTTAGTA+AGG | - | chr3.3:69465194-69465213 | MS.gene25691:intron | 30.0% |
| !!! | TGTTTCTTTAGATTTTGGCT+AGG | - | chr3.3:69464607-69464626 | MS.gene25691:CDS | 30.0% |
| !!! | TTTAGATTTTGGCTAGGTTT+TGG | - | chr3.3:69464613-69464632 | MS.gene25691:CDS | 30.0% |
| AAGGAGTTTCTTAGAAGACA+CGG | - | chr3.3:69465213-69465232 | MS.gene25691:intron | 35.0% | |
| AATATCGAGAAGAAACCAAG+TGG | + | chr3.3:69465262-69465281 | None:intergenic | 35.0% | |
| AATGTATCAGCAGCAGTAAA+TGG | - | chr3.3:69464418-69464437 | MS.gene25691:CDS | 35.0% | |
| ACCGAGCTACTTATCTATAT+AGG | - | chr3.3:69465052-69465071 | MS.gene25691:intron | 35.0% | |
| ATCCAAAAAAGAGAGATGCA+GGG | - | chr3.3:69465754-69465773 | MS.gene25691:CDS | 35.0% | |
| ATTGCATTCATATCTTGTGC+CGG | + | chr3.3:69465345-69465364 | None:intergenic | 35.0% | |
| CAATAGTAAGTTAAACCAGC+AGG | + | chr3.3:69464892-69464911 | None:intergenic | 35.0% | |
| CAATTATGATGGCTGTGAAA+TGG | + | chr3.3:69464279-69464298 | None:intergenic | 35.0% | |
| GACATAATAGTAGCTGAAAG+AGG | + | chr3.3:69464655-69464674 | None:intergenic | 35.0% | |
| TACCAGAAGCTGATTATGTT+TGG | - | chr3.3:69464839-69464858 | MS.gene25691:CDS | 35.0% | |
| TATGCTAACAAAAAGACTCG+TGG | - | chr3.3:69464679-69464698 | MS.gene25691:CDS | 35.0% | |
| TGACATTTGGTATGCAGAAA+AGG | + | chr3.3:69464333-69464352 | None:intergenic | 35.0% | |
| TGGAGAATCATTCTCATGTT+TGG | - | chr3.3:69464859-69464878 | MS.gene25691:CDS | 35.0% | |
| TTTACTGCTGCTGATACATT+TGG | + | chr3.3:69464418-69464437 | None:intergenic | 35.0% | |
| ! | AAAAGTTTACCTTGCTGTCT+CGG | + | chr3.3:69464929-69464948 | None:intergenic | 35.0% |
| ! | GAAATGGTACCATTGTGTTT+TGG | + | chr3.3:69464263-69464282 | None:intergenic | 35.0% |
| ! | GTGGCTTTTATCGATGTTAT+TGG | - | chr3.3:69465441-69465460 | MS.gene25691:CDS | 35.0% |
| !! | CTGCTGGTTTAACTTACTAT+TGG | - | chr3.3:69464890-69464909 | MS.gene25691:intron | 35.0% |
| !! | TATGCAAGGGTTTGGAATTT+TGG | - | chr3.3:69464726-69464745 | MS.gene25691:CDS | 35.0% |
| !! | TTTTGGCTAGGTTTTGGTAT+TGG | - | chr3.3:69464619-69464638 | MS.gene25691:CDS | 35.0% |
| !!! | AACTTTTCTTTGGTTGGCTT+GGG | - | chr3.3:69464470-69464489 | MS.gene25691:CDS | 35.0% |
| ACAACGCTTATAGCACTTTG+TGG | - | chr3.3:69465393-69465412 | MS.gene25691:CDS | 40.0% | |
| AGAATATACTACACACACCC+AGG | - | chr3.3:69464367-69464386 | MS.gene25691:CDS | 40.0% | |
| AGCCATCATAATTGCTGGTA+TGG | - | chr3.3:69464285-69464304 | MS.gene25691:CDS | 40.0% | |
| ATCAACAAGCCTCCTCTAAT+AGG | - | chr3.3:69465937-69465956 | MS.gene25691:CDS | 40.0% | |
| CAAGCCAACCAAAGAAAAGT+TGG | + | chr3.3:69464471-69464490 | None:intergenic | 40.0% | |
| CCAAATGTCACCAAGTTACT+TGG | - | chr3.3:69464343-69464362 | MS.gene25691:CDS | 40.0% | |
| CTCCAAACATAATCAGCTTC+TGG | + | chr3.3:69464844-69464863 | None:intergenic | 40.0% | |
| CTTGTATGCTTCACAAAGCA+AGG | - | chr3.3:69465731-69465750 | MS.gene25691:CDS | 40.0% | |
| GATCCAAAAAAGAGAGATGC+AGG | - | chr3.3:69465753-69465772 | MS.gene25691:CDS | 40.0% | |
| GCCATCATAATTGCTGGTAT+GGG | - | chr3.3:69464286-69464305 | MS.gene25691:CDS | 40.0% | |
| GGAGCTATTATAGGTGCATT+TGG | - | chr3.3:69465705-69465724 | MS.gene25691:CDS | 40.0% | |
| TCCCATACCAGCAATTATGA+TGG | + | chr3.3:69464290-69464309 | None:intergenic | 40.0% | |
| TCGCTATTCCGTATGATCAT+TGG | - | chr3.3:69465520-69465539 | MS.gene25691:CDS | 40.0% | |
| TCTTCATTCCAATACCAGCA+GGG | + | chr3.3:69465782-69465801 | None:intergenic | 40.0% | |
| TGGTCTAACTCTTGCTCTTA+TGG | - | chr3.3:69464519-69464538 | MS.gene25691:CDS | 40.0% | |
| TTCACAGCCATCATAATTGC+TGG | - | chr3.3:69464280-69464299 | MS.gene25691:CDS | 40.0% | |
| TTCTTCATTCCAATACCAGC+AGG | + | chr3.3:69465783-69465802 | None:intergenic | 40.0% | |
| TTGATGCAGCCAAAACACAA+TGG | - | chr3.3:69464251-69464270 | MS.gene25691:CDS | 40.0% | |
| TTGCTGAGTGACCAAAAGAA+AGG | + | chr3.3:69464567-69464586 | None:intergenic | 40.0% | |
| TTTCTTGTGCCAGAAGCTAA+TGG | - | chr3.3:69465852-69465871 | MS.gene25691:CDS | 40.0% | |
| ! | AAAGTTTACCTTGCTGTCTC+GGG | + | chr3.3:69464928-69464947 | None:intergenic | 40.0% |
| ! | CCAAGTAACTTGGTGACATT+TGG | + | chr3.3:69464346-69464365 | None:intergenic | 40.0% |
| ! | CTTGCTGTGGTTAATTGTCT+TGG | - | chr3.3:69465816-69465835 | MS.gene25691:CDS | 40.0% |
| ! | GTGCAAGACAAGAACAGTTT+TGG | - | chr3.3:69465180-69465199 | MS.gene25691:intron | 40.0% |
| ! | TCTTTTGGTCACTCAGCAAA+GGG | - | chr3.3:69464568-69464587 | MS.gene25691:CDS | 40.0% |
| ! | TTCTTTTGGTCACTCAGCAA+AGG | - | chr3.3:69464567-69464586 | MS.gene25691:CDS | 40.0% |
| !! | CAACTTTTCTTTGGTTGGCT+TGG | - | chr3.3:69464469-69464488 | MS.gene25691:CDS | 40.0% |
| !! | CTTCGGTTTTTGCTATGCAA+GGG | - | chr3.3:69464713-69464732 | MS.gene25691:CDS | 40.0% |
| !! | GTAAATGGTGTTGCTCTTTG+TGG | - | chr3.3:69464433-69464452 | MS.gene25691:CDS | 40.0% |
| !! | GTTTTTGCTATGCAAGGGTT+TGG | - | chr3.3:69464718-69464737 | MS.gene25691:CDS | 40.0% |
| !!! | ACTTTTCTTTGGTTGGCTTG+GGG | - | chr3.3:69464471-69464490 | MS.gene25691:CDS | 40.0% |
| !!! | ATTGTGTTTTGGCTGCATCA+AGG | + | chr3.3:69464252-69464271 | None:intergenic | 40.0% |
| !!! | CACTCTTATTTTGCTTGCTG+TGG | - | chr3.3:69465803-69465822 | MS.gene25691:CDS | 40.0% |
| !!! | TACCCTGCATCTCTCTTTTT+TGG | + | chr3.3:69465759-69465778 | None:intergenic | 40.0% |
| !!! | TTGTGTTTTGGCTGCATCAA+GGG | + | chr3.3:69464251-69464270 | None:intergenic | 40.0% |
| AAAATCCAGCGTTCGAACTC+TGG | + | chr3.3:69464996-69465015 | None:intergenic | 45.0% | |
| ACATTTGGAGGCAAAGTTCC+AGG | + | chr3.3:69464403-69464422 | None:intergenic | 45.0% | |
| ACTGCTGCTGATACATTTGG+AGG | + | chr3.3:69464415-69464434 | None:intergenic | 45.0% | |
| AGCACTTTGTGGAACTGTTC+CGG | - | chr3.3:69465404-69465423 | MS.gene25691:CDS | 45.0% | |
| AGGAACAGTCCTATTAGAGG+AGG | + | chr3.3:69465949-69465968 | None:intergenic | 45.0% | |
| AGGTTGAGGTCTACATGTCA+TGG | - | chr3.3:69465657-69465676 | MS.gene25691:CDS | 45.0% | |
| ATGGTATATCCTCTGCAGCA+GGG | - | chr3.3:69465676-69465695 | MS.gene25691:CDS | 45.0% | |
| CACAGGAACAGTCCTATTAG+AGG | + | chr3.3:69465952-69465971 | None:intergenic | 45.0% | |
| GCAGCGTCAACTTTATAAGG+CGG | + | chr3.3:69464808-69464827 | None:intergenic | 45.0% | |
| GCTGCAGCGTCAACTTTATA+AGG | + | chr3.3:69464811-69464830 | None:intergenic | 45.0% | |
| GGGAAAGCTGGAGCTATTAT+AGG | - | chr3.3:69465696-69465715 | MS.gene25691:CDS | 45.0% | |
| GTATTCTCCTCTCTTGCTTC+TGG | - | chr3.3:69464541-69464560 | MS.gene25691:CDS | 45.0% | |
| TAGCTCGGTTAGTGAGTGAA+AGG | + | chr3.3:69465041-69465060 | None:intergenic | 45.0% | |
| TGCTTGGAACAACTTCCACT+TGG | - | chr3.3:69465244-69465263 | MS.gene25691:intron | 45.0% | |
| ! | CACTCAGCAAAGGGTACAAT+TGG | - | chr3.3:69464577-69464596 | MS.gene25691:CDS | 45.0% |
| ! | CAGGCCAACTTTTCTTTGGT+TGG | - | chr3.3:69464464-69464483 | MS.gene25691:CDS | 45.0% |
| ! | CTAGCAGGCCAACTTTTCTT+TGG | - | chr3.3:69464460-69464479 | MS.gene25691:CDS | 45.0% |
| !! | CAAGGGTTTGGAATTTTGGC+TGG | - | chr3.3:69464730-69464749 | MS.gene25691:CDS | 45.0% |
| !! | CTTGCTTCTGGCCTTTCTTT+TGG | - | chr3.3:69464553-69464572 | MS.gene25691:CDS | 45.0% |
| !! | GCTTCGGTTTTTGCTATGCA+AGG | - | chr3.3:69464712-69464731 | MS.gene25691:CDS | 45.0% |
| !! | TAGTATTGGTTGGCTTCCAC+CGG | - | chr3.3:69465323-69465342 | MS.gene25691:CDS | 45.0% |
| !! | TGGCTAGGTTTTGGTATTGG+TGG | - | chr3.3:69464622-69464641 | MS.gene25691:CDS | 45.0% |
| AGAAAGGCCAGAAGCAAGAG+AGG | + | chr3.3:69464551-69464570 | None:intergenic | 50.0% | |
| AGACACGGTCTTCATCTGCT+TGG | - | chr3.3:69465228-69465247 | MS.gene25691:intron | 50.0% | |
| AGTTTCCAGAGTTCGAACGC+TGG | - | chr3.3:69464988-69465007 | MS.gene25691:intron | 50.0% | |
| ATGTAGACCTCAACCTAGCC+GGG | + | chr3.3:69465653-69465672 | None:intergenic | 50.0% | |
| CAACCTAGCCGGGAAAATCT+CGG | + | chr3.3:69465643-69465662 | None:intergenic | 50.0% | |
| CATGGTATATCCTCTGCAGC+AGG | - | chr3.3:69465675-69465694 | MS.gene25691:CDS | 50.0% | |
| CATGTAGACCTCAACCTAGC+CGG | + | chr3.3:69465654-69465673 | None:intergenic | 50.0% | |
| GAATGCAAAACAAGCAGCGC+AGG | - | chr3.3:69465095-69465114 | MS.gene25691:intron | 50.0% | |
| GCACTTTGTGGAACTGTTCC+GGG | - | chr3.3:69465405-69465424 | MS.gene25691:CDS | 50.0% | |
| GCATTCATATCTTGTGCCGG+TGG | + | chr3.3:69465342-69465361 | None:intergenic | 50.0% | |
| GGACATGTCAAGTGTGTTGC+AGG | - | chr3.3:69465116-69465135 | MS.gene25691:intron | 50.0% | |
| TCGTGGCGCGTTTATAGCTT+CGG | - | chr3.3:69464696-69464715 | MS.gene25691:CDS | 50.0% | |
| TGAAAATGCCCGAGACAGCA+AGG | - | chr3.3:69464917-69464936 | MS.gene25691:intron | 50.0% | |
| ! | AGATTTTCCCGGCTAGGTTG+AGG | - | chr3.3:69465643-69465662 | MS.gene25691:CDS | 50.0% |
| !! | GGTTGGCTTGGGGACAAAAT+GGG | - | chr3.3:69464481-69464500 | MS.gene25691:CDS | 50.0% |
| !! | TGGTTGGCTTGGGGACAAAA+TGG | - | chr3.3:69464480-69464499 | MS.gene25691:CDS | 50.0% |
| !! | TGTTCCGGGATACTGGTTCA+CGG | - | chr3.3:69465419-69465438 | MS.gene25691:CDS | 50.0% |
| !!! | GGGTTTGGAATTTTGGCTGG+TGG | - | chr3.3:69464733-69464752 | MS.gene25691:CDS | 50.0% |
| ATGTTTGGCGCTGTTCCTGC+TGG | - | chr3.3:69464874-69464893 | MS.gene25691:intron | 55.0% | |
| CTCGGCAGGCACAACAAAAG+TGG | + | chr3.3:69465625-69465644 | None:intergenic | 55.0% | |
| GCTCTTTGTGGCACTCTAGC+AGG | - | chr3.3:69464445-69464464 | MS.gene25691:CDS | 55.0% | |
| GTGGAACTGTTCCGGGATAC+TGG | - | chr3.3:69465412-69465431 | MS.gene25691:CDS | 55.0% | |
| TTCCAGGCTTGAGTGCACCT+GGG | + | chr3.3:69464387-69464406 | None:intergenic | 55.0% | |
| ! | TGTGCCTGCCGAGATTTTCC+CGG | - | chr3.3:69465632-69465651 | MS.gene25691:CDS | 55.0% |
| CTAGCCGGGAAAATCTCGGC+AGG | + | chr3.3:69465639-69465658 | None:intergenic | 60.0% | |
| GCCACCGTGAACCAGTATCC+CGG | + | chr3.3:69465426-69465445 | None:intergenic | 60.0% | |
| GTTCCAGGCTTGAGTGCACC+TGG | + | chr3.3:69464388-69464407 | None:intergenic | 60.0% | |
| TCCAGCTTTCCCTGCTGCAG+AGG | + | chr3.3:69465688-69465707 | None:intergenic | 60.0% | |
| TCCTCTGCAGCAGGGAAAGC+TGG | - | chr3.3:69465684-69465703 | MS.gene25691:CDS | 60.0% | |
| ! | AGAGATGCAGGGTACCCTGC+TGG | - | chr3.3:69465765-69465784 | MS.gene25691:CDS | 60.0% |
| ! | CTGCCGAGATTTTCCCGGCT+AGG | - | chr3.3:69465637-69465656 | MS.gene25691:CDS | 60.0% |
| ! | GCAGGGTACCCTGCTGGTAT+TGG | - | chr3.3:69465771-69465790 | MS.gene25691:CDS | 60.0% |
| !! | TCCGGGATACTGGTTCACGG+TGG | - | chr3.3:69465422-69465441 | MS.gene25691:CDS | 60.0% |
| CACCCAGGTGCACTCAAGCC+TGG | - | chr3.3:69464382-69464401 | MS.gene25691:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 69464217 | 69465974 | 69464217 | ID=MS.gene25691 |
| chr3.3 | mRNA | 69464217 | 69465974 | 69464217 | ID=MS.gene25691.t1;Parent=MS.gene25691 |
| chr3.3 | exon | 69465296 | 69465974 | 69465296 | ID=MS.gene25691.t1.exon1;Parent=MS.gene25691.t1 |
| chr3.3 | CDS | 69465296 | 69465974 | 69465296 | ID=cds.MS.gene25691.t1;Parent=MS.gene25691.t1 |
| chr3.3 | exon | 69464217 | 69464878 | 69464217 | ID=MS.gene25691.t1.exon2;Parent=MS.gene25691.t1 |
| chr3.3 | CDS | 69464217 | 69464878 | 69464217 | ID=cds.MS.gene25691.t1;Parent=MS.gene25691.t1 |
| Gene Sequence |
| Protein sequence |
