Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25781.t1 | XP_003601451.1 | 99.3 | 443 | 3 | 0 | 1 | 443 | 1 | 443 | 2.10E-248 | 867.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25781.t1 | Q9SGU9 | 76.1 | 401 | 95 | 1 | 39 | 438 | 40 | 440 | 1.3e-177 | 624.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25781.t1 | G7J805 | 99.3 | 443 | 3 | 0 | 1 | 443 | 1 | 443 | 1.5e-248 | 867.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24606 | MS.gene25781 | PPI |
| MS.gene75011 | MS.gene25781 | PPI |
| MS.gene029829 | MS.gene25781 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25781.t1 | MTR_3g080850 | 99.323 | 443 | 3 | 0 | 1 | 443 | 1 | 443 | 0.0 | 906 |
| MS.gene25781.t1 | MTR_1g077890 | 75.169 | 443 | 108 | 2 | 1 | 441 | 1 | 443 | 0.0 | 664 |
| MS.gene25781.t1 | MTR_6g012730 | 30.058 | 346 | 227 | 7 | 92 | 433 | 138 | 472 | 9.28e-43 | 157 |
| MS.gene25781.t1 | MTR_7g011230 | 30.030 | 333 | 218 | 7 | 92 | 420 | 196 | 517 | 8.87e-40 | 150 |
| MS.gene25781.t1 | MTR_1g064320 | 29.319 | 382 | 231 | 13 | 48 | 420 | 97 | 448 | 1.40e-36 | 140 |
| MS.gene25781.t1 | MTR_1g064320 | 29.319 | 382 | 231 | 13 | 48 | 420 | 96 | 447 | 1.52e-36 | 140 |
| MS.gene25781.t1 | MTR_6g012730 | 28.783 | 337 | 203 | 8 | 92 | 423 | 138 | 442 | 4.36e-34 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25781.t1 | AT1G64660 | 75.871 | 402 | 96 | 1 | 39 | 439 | 40 | 441 | 0.0 | 635 |
| MS.gene25781.t1 | AT3G01120 | 34.132 | 334 | 203 | 8 | 92 | 420 | 224 | 545 | 8.08e-52 | 183 |
| MS.gene25781.t1 | AT1G33320 | 30.655 | 336 | 215 | 9 | 90 | 420 | 33 | 355 | 5.79e-43 | 155 |
| MS.gene25781.t1 | AT1G33320 | 30.655 | 336 | 215 | 9 | 90 | 420 | 72 | 394 | 1.32e-42 | 155 |
| MS.gene25781.t1 | AT1G33320 | 29.907 | 321 | 207 | 9 | 105 | 420 | 3 | 310 | 2.75e-37 | 139 |
| MS.gene25781.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 13 | 384 | 6.74e-36 | 136 |
| MS.gene25781.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 35 | 406 | 9.95e-36 | 136 |
| MS.gene25781.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 76 | 447 | 2.01e-35 | 136 |
| MS.gene25781.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 91 | 462 | 2.09e-35 | 137 |
| MS.gene25781.t1 | AT3G57050 | 31.613 | 310 | 175 | 12 | 46 | 341 | 91 | 377 | 3.49e-31 | 123 |
Find 121 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAAAACTATGCTCATTT+TGG | 0.190448 | 3.2:-70788150 | MS.gene25781:CDS |
| GCCAATGCCCGCCATGAATT+TGG | 0.195339 | 3.2:-70789808 | MS.gene25781:CDS |
| GTGGCTTCTAGTACTCTTTA+TGG | 0.228110 | 3.2:-70789520 | MS.gene25781:CDS |
| AGCTAGGATTGCACACAAAA+AGG | 0.264016 | 3.2:-70789320 | MS.gene25781:CDS |
| GACAGTTCAAATGCTACCTT+TGG | 0.325926 | 3.2:+70788399 | None:intergenic |
| GCATTGGCGAGTGCGGCCTC+TGG | 0.329540 | 3.2:+70789823 | None:intergenic |
| GCGTCTTTGCCTTCTACAAC+AGG | 0.335525 | 3.2:+70789889 | None:intergenic |
| ATGAATTTGGCGAACATGGC+GGG | 0.358137 | 3.2:-70789795 | MS.gene25781:CDS |
| GCTACCTTTGGGTTCATTGT+TGG | 0.369052 | 3.2:+70788411 | None:intergenic |
| GAGGAGGAACAGAAACTTGC+TGG | 0.369477 | 3.2:-70788051 | MS.gene25781:CDS |
| CGCCATGAATTTGGCGAACA+TGG | 0.377759 | 3.2:-70789799 | MS.gene25781:CDS |
| CGCCATGTTCGCCAAATTCA+TGG | 0.382098 | 3.2:+70789797 | None:intergenic |
| GGCTGAGATTGAGGACGGTT+GGG | 0.382101 | 3.2:+70789650 | None:intergenic |
| GGTGGTGGTGACATTATTGC+AGG | 0.382112 | 3.2:-70789196 | MS.gene25781:intron |
| ACTACCAGAGCAAGACATTA+GGG | 0.386384 | 3.2:+70788095 | None:intergenic |
| CTCGAAAACCCTGTTGTAGA+AGG | 0.388204 | 3.2:-70789898 | MS.gene25781:CDS |
| CATGCCACTGGCTGTACAAT+AGG | 0.392928 | 3.2:+70789594 | None:intergenic |
| CATTGGCGAGTGCGGCCTCT+GGG | 0.403366 | 3.2:+70789824 | None:intergenic |
| CGGCTGAGATTGAGGACGGT+TGG | 0.412741 | 3.2:+70789649 | None:intergenic |
| CTGTAAAAGAACTGCAGAAA+TGG | 0.415766 | 3.2:+70789567 | None:intergenic |
| GCCAAATTCATGGCGGGCAT+TGG | 0.417529 | 3.2:+70789807 | None:intergenic |
| GGCAACAAAAGTTATGGTTA+TGG | 0.429995 | 3.2:-70788231 | MS.gene25781:CDS |
| TACTACCAGAGCAAGACATT+AGG | 0.431550 | 3.2:+70788094 | None:intergenic |
| CCTAGCTAGCTCAGGAGTAT+TGG | 0.444269 | 3.2:+70789336 | None:intergenic |
| CTGCTTTCTCCTGCTCGTCT+TGG | 0.446270 | 3.2:-70789259 | MS.gene25781:CDS |
| AAAATATTTGCCGGAGAGCT+TGG | 0.448281 | 3.2:-70789712 | MS.gene25781:CDS |
| CTTCGAGGGCCGCCATCTTA+CGG | 0.450790 | 3.2:+70789629 | None:intergenic |
| ATTCTCAACTGCTTCCAAAT+CGG | 0.458070 | 3.2:+70789426 | None:intergenic |
| ACTCTCCGCAAAATATTTGC+CGG | 0.462891 | 3.2:-70789721 | MS.gene25781:CDS |
| CCAATACTCCTGAGCTAGCT+AGG | 0.463921 | 3.2:-70789336 | MS.gene25781:CDS |
| TCAAGGAGCCATGATGCTGC+TGG | 0.465864 | 3.2:-70788436 | MS.gene25781:CDS |
| TCCATAGGCAACAAAAGTTA+TGG | 0.473714 | 3.2:-70788237 | MS.gene25781:CDS |
| TGGGATTCTTTGTGTTGACA+TGG | 0.474228 | 3.2:-70788208 | MS.gene25781:CDS |
| AGGCAGCCTCGGTGCCTTCG+AGG | 0.480260 | 3.2:+70789614 | None:intergenic |
| GGGATTCTTTGTGTTGACAT+GGG | 0.496704 | 3.2:-70788207 | MS.gene25781:CDS |
| CAGCCACGGCGGACATGTTG+TGG | 0.499450 | 3.2:-70789539 | MS.gene25781:CDS |
| GGACTCAATGTGATCTATCC+TGG | 0.499685 | 3.2:-70788294 | MS.gene25781:CDS |
| CCATCTTACGGCTGAGATTG+AGG | 0.506032 | 3.2:+70789641 | None:intergenic |
| GCCGGAGAGCTTGGTCATGA+AGG | 0.506111 | 3.2:-70789703 | MS.gene25781:CDS |
| CAAGGAGCCATGATGCTGCT+GGG | 0.506322 | 3.2:-70788435 | MS.gene25781:CDS |
| GGCTGTACAATAGGCAGCCT+CGG | 0.508312 | 3.2:+70789603 | None:intergenic |
| CCTCAATCTCAGCCGTAAGA+TGG | 0.509888 | 3.2:-70789641 | MS.gene25781:CDS |
| GTCAGAGAGAATCCCACACC+TGG | 0.515259 | 3.2:-70788379 | MS.gene25781:CDS |
| ACTGACATCCTCACCATCCC+TGG | 0.518257 | 3.2:+70788021 | None:intergenic |
| AACGCATTGATGGGAATTCA+AGG | 0.519505 | 3.2:-70788453 | MS.gene25781:CDS |
| ACAGTTCAAATGCTACCTTT+GGG | 0.519702 | 3.2:+70788400 | None:intergenic |
| TGACTCAAAATACAGCACTT+TGG | 0.522359 | 3.2:+70789384 | None:intergenic |
| CATGCTGTGGATGATCTTCA+AGG | 0.523751 | 3.2:+70788271 | None:intergenic |
| GACTGTGTTCTTTCATGCGA+AGG | 0.524215 | 3.2:+70788355 | None:intergenic |
| AGAAATGCTGCAAAAGTGCA+TGG | 0.526399 | 3.2:+70789491 | None:intergenic |
| AGAAATGGCGGACATGCCAC+TGG | 0.527021 | 3.2:+70789582 | None:intergenic |
| GTATTGGCCACATTCAAGCT+TGG | 0.529452 | 3.2:+70789352 | None:intergenic |
| GGCAGCCTCGGTGCCTTCGA+GGG | 0.529893 | 3.2:+70789615 | None:intergenic |
| TGTTGGCCCCAGCAGCATCA+TGG | 0.530505 | 3.2:+70788428 | None:intergenic |
| CTTCTAGTACTCTTTATGGT+GGG | 0.532023 | 3.2:-70789516 | MS.gene25781:CDS |
| GGATTCTTTGTGTTGACATG+GGG | 0.532362 | 3.2:-70788206 | MS.gene25781:CDS |
| AACAAAAGTTATGGTTATGG+TGG | 0.536628 | 3.2:-70788228 | MS.gene25781:CDS |
| GGAGCAGAAGTGGAGTCAGC+TGG | 0.536681 | 3.2:-70787980 | MS.gene25781:CDS |
| TGTGCAATCCTAGCTAGCTC+AGG | 0.537083 | 3.2:+70789328 | None:intergenic |
| ATGTTCGCCAAATTCATGGC+GGG | 0.537556 | 3.2:+70789801 | None:intergenic |
| ATCTCTAAGTTTATCAGTGG+TGG | 0.542218 | 3.2:-70789214 | MS.gene25781:CDS |
| TCTAAGTTTATCAGTGGTGG+TGG | 0.543204 | 3.2:-70789211 | MS.gene25781:CDS |
| TCATGCGAAGGCCCAGGTGT+GGG | 0.543259 | 3.2:+70788367 | None:intergenic |
| GAAACCCTAATGTCTTGCTC+TGG | 0.544821 | 3.2:-70788099 | MS.gene25781:CDS |
| CGAGCAGGAGAAAGCAGCAT+AGG | 0.546115 | 3.2:+70789265 | None:intergenic |
| TTGGAACATTGGAGCAGAAG+TGG | 0.548304 | 3.2:-70787990 | MS.gene25781:CDS |
| CGTAAGATGGCGGCCCTCGA+AGG | 0.549334 | 3.2:-70789628 | MS.gene25781:CDS |
| GTTCTTTCATGCGAAGGCCC+AGG | 0.550181 | 3.2:+70788361 | None:intergenic |
| AGAAAGCAGCATAGGAGCAA+AGG | 0.550769 | 3.2:+70789273 | None:intergenic |
| CGGGGTTAACATGTCGATTG+AGG | 0.551059 | 3.2:-70789776 | MS.gene25781:CDS |
| TGCTGGAATCACACCAGGGA+TGG | 0.552052 | 3.2:-70788034 | MS.gene25781:CDS |
| AGTTGGATACATTGGAACAT+TGG | 0.552093 | 3.2:-70788001 | MS.gene25781:CDS |
| AGAACACAGTCATCGTGCAT+TGG | 0.554112 | 3.2:-70788343 | MS.gene25781:CDS |
| GCTTCTAGTACTCTTTATGG+TGG | 0.554413 | 3.2:-70789517 | MS.gene25781:CDS |
| ACATCTGCACCAAGACGAGC+AGG | 0.554578 | 3.2:+70789250 | None:intergenic |
| CACAAGTAGTGAGCTGAATG+AGG | 0.555659 | 3.2:-70788070 | MS.gene25781:CDS |
| TGCTCGTCTTGGTGCAGATG+TGG | 0.556305 | 3.2:-70789248 | MS.gene25781:CDS |
| TGTGGATGATCTTCAAGGCC+AGG | 0.556561 | 3.2:+70788276 | None:intergenic |
| ACAAAAGTTATGGTTATGGT+GGG | 0.556650 | 3.2:-70788227 | MS.gene25781:CDS |
| TGAATTTGGCGAACATGGCG+GGG | 0.557188 | 3.2:-70789794 | MS.gene25781:CDS |
| GCCTTCATGACCAAGCTCTC+CGG | 0.559070 | 3.2:+70789702 | None:intergenic |
| TTCATGCGAAGGCCCAGGTG+TGG | 0.560694 | 3.2:+70788366 | None:intergenic |
| CTCTGCTACCTTCACCGTCA+TGG | 0.561142 | 3.2:-70789752 | MS.gene25781:CDS |
| AGGATGTCAGTTGGATACAT+TGG | 0.562882 | 3.2:-70788009 | MS.gene25781:CDS |
| GTTGAGAATGCAATTGTGGA+AGG | 0.566748 | 3.2:-70789412 | MS.gene25781:CDS |
| ATGGCGGGCATTGGCGAGTG+CGG | 0.568985 | 3.2:+70789816 | None:intergenic |
| AGAACACATGGCGGATACGT+TGG | 0.569236 | 3.2:-70789953 | None:intergenic |
| AAACTTGCTGGAATCACACC+AGG | 0.572083 | 3.2:-70788039 | MS.gene25781:CDS |
| CGTCTTTGCCTTCTACAACA+GGG | 0.572407 | 3.2:+70789890 | None:intergenic |
| GGACGGTTGGGTTGAAATGA+CGG | 0.578007 | 3.2:+70789662 | None:intergenic |
| ATCTGGTTCCATGACGGTGA+AGG | 0.582243 | 3.2:+70789744 | None:intergenic |
| TGCAAATCCAAGCTTGAATG+TGG | 0.596227 | 3.2:-70789359 | MS.gene25781:CDS |
| GAATCACACCAGGGATGGTG+AGG | 0.601002 | 3.2:-70788029 | MS.gene25781:CDS |
| AAGGAGCCATGATGCTGCTG+GGG | 0.605331 | 3.2:-70788434 | MS.gene25781:CDS |
| AGCAGTTGAGAATGCAATTG+TGG | 0.608406 | 3.2:-70789416 | MS.gene25781:CDS |
| CATGAACTATTGAAATCCAT+AGG | 0.612583 | 3.2:-70788252 | MS.gene25781:CDS |
| CTTACGGCTGAGATTGAGGA+CGG | 0.623850 | 3.2:+70789645 | None:intergenic |
| GAAATGCTGCAAAAGTGCAT+GGG | 0.625620 | 3.2:+70789492 | None:intergenic |
| TTGTGTTGACATGGGGACAG+TGG | 0.626253 | 3.2:-70788199 | MS.gene25781:CDS |
| CATGAATTTGGCGAACATGG+CGG | 0.628117 | 3.2:-70789796 | MS.gene25781:CDS |
| GGGATGGTGAGGATGTCAGT+TGG | 0.628293 | 3.2:-70788018 | MS.gene25781:CDS |
| TAAAAGAACTGCAGAAATGG+CGG | 0.633629 | 3.2:+70789570 | None:intergenic |
| GAGAGTATCTGGTTCCATGA+CGG | 0.637077 | 3.2:+70789738 | None:intergenic |
| AGTATCTCTAAGTTTATCAG+TGG | 0.640242 | 3.2:-70789217 | MS.gene25781:CDS |
| GATTTCAATAGTTCATGCTG+TGG | 0.640950 | 3.2:+70788258 | None:intergenic |
| TTGAGAATGCAATTGTGGAA+GGG | 0.657804 | 3.2:-70789411 | MS.gene25781:CDS |
| AAAATGACAGGAGCTGTGTG+TGG | 0.660955 | 3.2:-70788492 | MS.gene25781:intron |
| GGCGGCCCTCGAAGGCACCG+AGG | 0.660961 | 3.2:-70789620 | MS.gene25781:CDS |
| CAATCTCAGCCGTAAGATGG+CGG | 0.663207 | 3.2:-70789638 | MS.gene25781:CDS |
| GCTGCCTATTGTACAGCCAG+TGG | 0.663963 | 3.2:-70789598 | MS.gene25781:CDS |
| AAGTAGTGAGCTGAATGAGG+AGG | 0.679239 | 3.2:-70788067 | MS.gene25781:CDS |
| CATGACGGTGAAGGTAGCAG+AGG | 0.682224 | 3.2:+70789753 | None:intergenic |
| GGGGCCAACAATGAACCCAA+AGG | 0.683668 | 3.2:-70788415 | MS.gene25781:CDS |
| AAGCCACAACATGTCCGCCG+TGG | 0.684164 | 3.2:+70789536 | None:intergenic |
| AAACTGACAAAATTCAATGG+CGG | 0.687533 | 3.2:-70789862 | MS.gene25781:CDS |
| TCAGAGAGAATCCCACACCT+GGG | 0.688572 | 3.2:-70788378 | MS.gene25781:CDS |
| AAATGACAGGAGCTGTGTGT+GGG | 0.705210 | 3.2:-70788491 | MS.gene25781:intron |
| AGAGTCTGACGTAGACCCAG+AGG | 0.708898 | 3.2:-70789839 | MS.gene25781:CDS |
| AACTTGCTGGAATCACACCA+GGG | 0.734971 | 3.2:-70788038 | MS.gene25781:CDS |
| CATGTTCGCCAAATTCATGG+CGG | 0.742307 | 3.2:+70789800 | None:intergenic |
| TTACAGCTCTGCAGCCACGG+CGG | 0.750934 | 3.2:-70789550 | MS.gene25781:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATAATATATTTTAAACAA+AGG | + | chr3.2:70788841-70788860 | None:intergenic | 10.0% |
| !! | AATTCTTTAATAATAAAGAC+CGG | + | chr3.2:70789000-70789019 | None:intergenic | 15.0% |
| !!! | AATTAATTTTAAAATGTCTC+CGG | - | chr3.2:70788978-70788997 | MS.gene25781:intron | 15.0% |
| !!! | ATATATTTTAAACAAAGGAA+AGG | + | chr3.2:70788836-70788855 | None:intergenic | 15.0% |
| !! | AAAAAACTGACAAAATTCAA+TGG | - | chr3.2:70788026-70788045 | MS.gene25781:CDS | 20.0% |
| !! | ATAGAGTAATATTAATAACG+TGG | - | chr3.2:70789126-70789145 | MS.gene25781:intron | 20.0% |
| !! | CTTTCAAAGAAAAAAATTGT+TGG | + | chr3.2:70788870-70788889 | None:intergenic | 20.0% |
| !! | TCATAAAACTATACAATGTA+CGG | + | chr3.2:70788927-70788946 | None:intergenic | 20.0% |
| !!! | ATTGAATTTTGTCAGTTTTT+TGG | + | chr3.2:70788027-70788046 | None:intergenic | 20.0% |
| ! | ATTCAACTATTTGCCTAATA+TGG | + | chr3.2:70788782-70788801 | None:intergenic | 25.0% |
| ! | CACTCAAACAAATATAATGT+TGG | + | chr3.2:70788901-70788920 | None:intergenic | 25.0% |
| ! | GCAAAATAGTAGATTTCTAT+TGG | - | chr3.2:70789148-70789167 | MS.gene25781:intron | 25.0% |
| !! | AGTTTGGTAATTCATAATAG+TGG | + | chr3.2:70788750-70788769 | None:intergenic | 25.0% |
| !!! | TCAAACTCACGTTTTTTTAA+AGG | + | chr3.2:70789312-70789331 | None:intergenic | 25.0% |
| AAACTGACAAAATTCAATGG+CGG | - | chr3.2:70788029-70788048 | MS.gene25781:CDS | 30.0% | |
| AACAAAAGTTATGGTTATGG+TGG | - | chr3.2:70789663-70789682 | MS.gene25781:CDS | 30.0% | |
| AATATGGCGAAACAAAAGTT+TGG | + | chr3.2:70788766-70788785 | None:intergenic | 30.0% | |
| ACAAAAGTTATGGTTATGGT+GGG | - | chr3.2:70789664-70789683 | MS.gene25781:CDS | 30.0% | |
| AGTATCTCTAAGTTTATCAG+TGG | - | chr3.2:70788674-70788693 | MS.gene25781:intron | 30.0% | |
| CATGAACTATTGAAATCCAT+AGG | - | chr3.2:70789639-70789658 | MS.gene25781:CDS | 30.0% | |
| ! | TTGCAAAACTATGCTCATTT+TGG | - | chr3.2:70789741-70789760 | MS.gene25781:CDS | 30.0% |
| ! | TTTGAAACCTTGAAAATGAC+AGG | - | chr3.2:70789387-70789406 | MS.gene25781:CDS | 30.0% |
| ! | TTTTGTTGACATATCCGATT+TGG | - | chr3.2:70788451-70788470 | MS.gene25781:CDS | 30.0% |
| !! | AACTTTTGTTTCGCCATATT+AGG | - | chr3.2:70788766-70788785 | MS.gene25781:intron | 30.0% |
| !! | GTTTTATGGCTGTTAGTTTA+GGG | - | chr3.2:70789763-70789782 | MS.gene25781:CDS | 30.0% |
| !!! | CTATGCTCATTTTGGTTTTA+TGG | - | chr3.2:70789749-70789768 | MS.gene25781:CDS | 30.0% |
| !!! | GTTGTACACTTTATTTTGAG+AGG | + | chr3.2:70789362-70789381 | None:intergenic | 30.0% |
| ACAGTTCAAATGCTACCTTT+GGG | + | chr3.2:70789494-70789513 | None:intergenic | 35.0% | |
| AGTGGTCACAATTATGTGAA+AGG | + | chr3.2:70788732-70788751 | None:intergenic | 35.0% | |
| AGTTGGATACATTGGAACAT+TGG | - | chr3.2:70789890-70789909 | MS.gene25781:CDS | 35.0% | |
| ATCTCTAAGTTTATCAGTGG+TGG | - | chr3.2:70788677-70788696 | MS.gene25781:intron | 35.0% | |
| ATTCTCAACTGCTTCCAAAT+CGG | + | chr3.2:70788468-70788487 | None:intergenic | 35.0% | |
| CTGTAAAAGAACTGCAGAAA+TGG | + | chr3.2:70788327-70788346 | None:intergenic | 35.0% | |
| CTTCTAGTACTCTTTATGGT+GGG | - | chr3.2:70788375-70788394 | MS.gene25781:CDS | 35.0% | |
| GATTTCAATAGTTCATGCTG+TGG | + | chr3.2:70789636-70789655 | None:intergenic | 35.0% | |
| GCAACCAGACTCAAAAAATT+AGG | - | chr3.2:70789576-70789595 | MS.gene25781:CDS | 35.0% | |
| GGCAACAAAAGTTATGGTTA+TGG | - | chr3.2:70789660-70789679 | MS.gene25781:CDS | 35.0% | |
| TAAAAGAACTGCAGAAATGG+CGG | + | chr3.2:70788324-70788343 | None:intergenic | 35.0% | |
| TCCATAGGCAACAAAAGTTA+TGG | - | chr3.2:70789654-70789673 | MS.gene25781:CDS | 35.0% | |
| TGACTCAAAATACAGCACTT+TGG | + | chr3.2:70788510-70788529 | None:intergenic | 35.0% | |
| TTGAGAATGCAATTGTGGAA+GGG | - | chr3.2:70788480-70788499 | MS.gene25781:CDS | 35.0% | |
| ! | ACCATAACTTTTGTTGCCTA+TGG | + | chr3.2:70789658-70789677 | None:intergenic | 35.0% |
| ! | TTTTGCAGCATTTCTTTGTG+AGG | - | chr3.2:70788408-70788427 | MS.gene25781:CDS | 35.0% |
| !! | AAGTTTTGTGAACGCATTGA+TGG | - | chr3.2:70789428-70789447 | MS.gene25781:CDS | 35.0% |
| !! | AGTTTTGTGAACGCATTGAT+GGG | - | chr3.2:70789429-70789448 | MS.gene25781:CDS | 35.0% |
| !! | GGTTTTATGGCTGTTAGTTT+AGG | - | chr3.2:70789762-70789781 | MS.gene25781:CDS | 35.0% |
| !!! | AATATTTTGCGGAGAGTATC+TGG | + | chr3.2:70788167-70788186 | None:intergenic | 35.0% |
| !!! | GAGTCCTAATTTTTTGAGTC+TGG | + | chr3.2:70789583-70789602 | None:intergenic | 35.0% |
| AAAATATTTGCCGGAGAGCT+TGG | - | chr3.2:70788179-70788198 | MS.gene25781:CDS | 40.0% | |
| ACTACCAGAGCAAGACATTA+GGG | + | chr3.2:70789799-70789818 | None:intergenic | 40.0% | |
| ACTCTCCGCAAAATATTTGC+CGG | - | chr3.2:70788170-70788189 | MS.gene25781:CDS | 40.0% | |
| AGCAGTTGAGAATGCAATTG+TGG | - | chr3.2:70788475-70788494 | MS.gene25781:CDS | 40.0% | |
| AGCTAGGATTGCACACAAAA+AGG | - | chr3.2:70788571-70788590 | MS.gene25781:intron | 40.0% | |
| AGGATGTCAGTTGGATACAT+TGG | - | chr3.2:70789882-70789901 | MS.gene25781:CDS | 40.0% | |
| GACAGTTCAAATGCTACCTT+TGG | + | chr3.2:70789495-70789514 | None:intergenic | 40.0% | |
| GCTAGGATTGCACACAAAAA+GGG | - | chr3.2:70788572-70788591 | MS.gene25781:intron | 40.0% | |
| GCTTCTAGTACTCTTTATGG+TGG | - | chr3.2:70788374-70788393 | MS.gene25781:CDS | 40.0% | |
| GTGGCTTCTAGTACTCTTTA+TGG | - | chr3.2:70788371-70788390 | MS.gene25781:CDS | 40.0% | |
| GTTGAGAATGCAATTGTGGA+AGG | - | chr3.2:70788479-70788498 | MS.gene25781:CDS | 40.0% | |
| TACTACCAGAGCAAGACATT+AGG | + | chr3.2:70789800-70789819 | None:intergenic | 40.0% | |
| TCTAAGTTTATCAGTGGTGG+TGG | - | chr3.2:70788680-70788699 | MS.gene25781:intron | 40.0% | |
| TGCAAATCCAAGCTTGAATG+TGG | - | chr3.2:70788532-70788551 | MS.gene25781:intron | 40.0% | |
| ! | AACGCATTGATGGGAATTCA+AGG | - | chr3.2:70789438-70789457 | MS.gene25781:CDS | 40.0% |
| ! | AGAAATGCTGCAAAAGTGCA+TGG | + | chr3.2:70788403-70788422 | None:intergenic | 40.0% |
| ! | GAAATGCTGCAAAAGTGCAT+GGG | + | chr3.2:70788402-70788421 | None:intergenic | 40.0% |
| ! | GGATTCTTTGTGTTGACATG+GGG | - | chr3.2:70789685-70789704 | MS.gene25781:CDS | 40.0% |
| ! | GGGATTCTTTGTGTTGACAT+GGG | - | chr3.2:70789684-70789703 | MS.gene25781:CDS | 40.0% |
| ! | TGGGATTCTTTGTGTTGACA+TGG | - | chr3.2:70789683-70789702 | MS.gene25781:CDS | 40.0% |
| AAAATGACAGGAGCTGTGTG+TGG | - | chr3.2:70789399-70789418 | MS.gene25781:CDS | 45.0% | |
| AAATGACAGGAGCTGTGTGT+GGG | - | chr3.2:70789400-70789419 | MS.gene25781:CDS | 45.0% | |
| AAGTAGTGAGCTGAATGAGG+AGG | - | chr3.2:70789824-70789843 | MS.gene25781:CDS | 45.0% | |
| ACACAAAAAGGGAGTGACTG+TGG | - | chr3.2:70788583-70788602 | MS.gene25781:intron | 45.0% | |
| AGAAAGCAGCATAGGAGCAA+AGG | + | chr3.2:70788621-70788640 | None:intergenic | 45.0% | |
| AGAACACAGTCATCGTGCAT+TGG | - | chr3.2:70789548-70789567 | MS.gene25781:CDS | 45.0% | |
| ATGAATTTGGCGAACATGGC+GGG | - | chr3.2:70788096-70788115 | MS.gene25781:CDS | 45.0% | |
| ATGTTCGCCAAATTCATGGC+GGG | + | chr3.2:70788093-70788112 | None:intergenic | 45.0% | |
| CACAAGTAGTGAGCTGAATG+AGG | - | chr3.2:70789821-70789840 | MS.gene25781:CDS | 45.0% | |
| CATGAATTTGGCGAACATGG+CGG | - | chr3.2:70788095-70788114 | MS.gene25781:CDS | 45.0% | |
| CATGCTGTGGATGATCTTCA+AGG | + | chr3.2:70789623-70789642 | None:intergenic | 45.0% | |
| CATGTTCGCCAAATTCATGG+CGG | + | chr3.2:70788094-70788113 | None:intergenic | 45.0% | |
| CGTCTTTGCCTTCTACAACA+GGG | + | chr3.2:70788004-70788023 | None:intergenic | 45.0% | |
| CTCGAAAACCCTGTTGTAGA+AGG | - | chr3.2:70787993-70788012 | MS.gene25781:CDS | 45.0% | |
| GAAACCCTAATGTCTTGCTC+TGG | - | chr3.2:70789792-70789811 | MS.gene25781:CDS | 45.0% | |
| GACTGTGTTCTTTCATGCGA+AGG | + | chr3.2:70789539-70789558 | None:intergenic | 45.0% | |
| GGACTCAATGTGATCTATCC+TGG | - | chr3.2:70789597-70789616 | MS.gene25781:CDS | 45.0% | |
| TTGGAACATTGGAGCAGAAG+TGG | - | chr3.2:70789901-70789920 | MS.gene25781:CDS | 45.0% | |
| ! | CTTCTACAACAGGGTTTTCG+AGG | + | chr3.2:70787995-70788014 | None:intergenic | 45.0% |
| ! | GCTACCTTTGGGTTCATTGT+TGG | + | chr3.2:70789483-70789502 | None:intergenic | 45.0% |
| ! | GCTCTCCGGCAAATATTTTG+CGG | + | chr3.2:70788178-70788197 | None:intergenic | 45.0% |
| ! | GTATTGGCCACATTCAAGCT+TGG | + | chr3.2:70788542-70788561 | None:intergenic | 45.0% |
| !! | AAACTTGCTGGAATCACACC+AGG | - | chr3.2:70789852-70789871 | MS.gene25781:CDS | 45.0% |
| !! | AACTTGCTGGAATCACACCA+GGG | - | chr3.2:70789853-70789872 | MS.gene25781:CDS | 45.0% |
| !! | GAGAGTATCTGGTTCCATGA+CGG | + | chr3.2:70788156-70788175 | None:intergenic | 45.0% |
| !!! | CACAGCTCCTGTCATTTTCA+AGG | + | chr3.2:70789397-70789416 | None:intergenic | 45.0% |
| !! | TTAAAATTAATTATATGATT+TGG | + | chr3.2:70788970-70788989 | None:intergenic | 5.0% |
| !!! | AAAATAACTTTTTTTTTTTA+AGG | + | chr3.2:70789283-70789302 | None:intergenic | 5.0% |
| CAAAAAGGGAGTGACTGTGG+TGG | - | chr3.2:70788586-70788605 | MS.gene25781:intron | 50.0% | |
| CAATCTCAGCCGTAAGATGG+CGG | - | chr3.2:70788253-70788272 | MS.gene25781:CDS | 50.0% | |
| CCAATACTCCTGAGCTAGCT+AGG | - | chr3.2:70788555-70788574 | MS.gene25781:intron | 50.0% | |
| CCATCTTACGGCTGAGATTG+AGG | + | chr3.2:70788253-70788272 | None:intergenic | 50.0% | |
| CCTCAATCTCAGCCGTAAGA+TGG | - | chr3.2:70788250-70788269 | MS.gene25781:CDS | 50.0% | |
| CGCCATGAATTTGGCGAACA+TGG | - | chr3.2:70788092-70788111 | MS.gene25781:CDS | 50.0% | |
| CGCCATGTTCGCCAAATTCA+TGG | + | chr3.2:70788097-70788116 | None:intergenic | 50.0% | |
| CTTACGGCTGAGATTGAGGA+CGG | + | chr3.2:70788249-70788268 | None:intergenic | 50.0% | |
| GAGGAGGAACAGAAACTTGC+TGG | - | chr3.2:70789840-70789859 | MS.gene25781:CDS | 50.0% | |
| GCGTCTTTGCCTTCTACAAC+AGG | + | chr3.2:70788005-70788024 | None:intergenic | 50.0% | |
| TCAGAGAGAATCCCACACCT+GGG | - | chr3.2:70789513-70789532 | MS.gene25781:CDS | 50.0% | |
| TGAATTTGGCGAACATGGCG+GGG | - | chr3.2:70788097-70788116 | MS.gene25781:CDS | 50.0% | |
| TGTGCAATCCTAGCTAGCTC+AGG | + | chr3.2:70788566-70788585 | None:intergenic | 50.0% | |
| TGTGGATGATCTTCAAGGCC+AGG | + | chr3.2:70789618-70789637 | None:intergenic | 50.0% | |
| ! | ATCTGGTTCCATGACGGTGA+AGG | + | chr3.2:70788150-70788169 | None:intergenic | 50.0% |
| ! | CATGCCACTGGCTGTACAAT+AGG | + | chr3.2:70788300-70788319 | None:intergenic | 50.0% |
| ! | CCTAGCTAGCTCAGGAGTAT+TGG | + | chr3.2:70788558-70788577 | None:intergenic | 50.0% |
| ! | CGGGGTTAACATGTCGATTG+AGG | - | chr3.2:70788115-70788134 | MS.gene25781:CDS | 50.0% |
| ! | CTTTTACAGCTCTGCAGCCA+CGG | - | chr3.2:70788338-70788357 | MS.gene25781:CDS | 50.0% |
| ! | GGTGGTGGTGACATTATTGC+AGG | - | chr3.2:70788695-70788714 | MS.gene25781:intron | 50.0% |
| ! | TTGTGTTGACATGGGGACAG+TGG | - | chr3.2:70789692-70789711 | MS.gene25781:CDS | 50.0% |
| !! | GGACGGTTGGGTTGAAATGA+CGG | + | chr3.2:70788232-70788251 | None:intergenic | 50.0% |
| AAGGAGCCATGATGCTGCTG+GGG | - | chr3.2:70789457-70789476 | MS.gene25781:CDS | 55.0% | |
| ACATCTGCACCAAGACGAGC+AGG | + | chr3.2:70788644-70788663 | None:intergenic | 55.0% | |
| ACTGACATCCTCACCATCCC+TGG | + | chr3.2:70789873-70789892 | None:intergenic | 55.0% | |
| AGAGTCTGACGTAGACCCAG+AGG | - | chr3.2:70788052-70788071 | MS.gene25781:CDS | 55.0% | |
| CAAGGAGCCATGATGCTGCT+GGG | - | chr3.2:70789456-70789475 | MS.gene25781:CDS | 55.0% | |
| CATGACGGTGAAGGTAGCAG+AGG | + | chr3.2:70788141-70788160 | None:intergenic | 55.0% | |
| CGAGCAGGAGAAAGCAGCAT+AGG | + | chr3.2:70788629-70788648 | None:intergenic | 55.0% | |
| CTCTGCTACCTTCACCGTCA+TGG | - | chr3.2:70788139-70788158 | MS.gene25781:CDS | 55.0% | |
| CTGCTTTCTCCTGCTCGTCT+TGG | - | chr3.2:70788632-70788651 | MS.gene25781:intron | 55.0% | |
| GAATCACACCAGGGATGGTG+AGG | - | chr3.2:70789862-70789881 | MS.gene25781:CDS | 55.0% | |
| GCCAATGCCCGCCATGAATT+TGG | - | chr3.2:70788083-70788102 | MS.gene25781:CDS | 55.0% | |
| GCCTTCATGACCAAGCTCTC+CGG | + | chr3.2:70788192-70788211 | None:intergenic | 55.0% | |
| GCTGCCTATTGTACAGCCAG+TGG | - | chr3.2:70788293-70788312 | MS.gene25781:CDS | 55.0% | |
| GGCTGAGATTGAGGACGGTT+GGG | + | chr3.2:70788244-70788263 | None:intergenic | 55.0% | |
| GGCTGTACAATAGGCAGCCT+CGG | + | chr3.2:70788291-70788310 | None:intergenic | 55.0% | |
| GGGATGGTGAGGATGTCAGT+TGG | - | chr3.2:70789873-70789892 | MS.gene25781:CDS | 55.0% | |
| GGGGCCAACAATGAACCCAA+AGG | - | chr3.2:70789476-70789495 | MS.gene25781:CDS | 55.0% | |
| GTCAGAGAGAATCCCACACC+TGG | - | chr3.2:70789512-70789531 | MS.gene25781:CDS | 55.0% | |
| GTTCTTTCATGCGAAGGCCC+AGG | + | chr3.2:70789533-70789552 | None:intergenic | 55.0% | |
| TCAAGGAGCCATGATGCTGC+TGG | - | chr3.2:70789455-70789474 | MS.gene25781:CDS | 55.0% | |
| TGCTGGAATCACACCAGGGA+TGG | - | chr3.2:70789857-70789876 | MS.gene25781:CDS | 55.0% | |
| ! | TGCTCGTCTTGGTGCAGATG+TGG | - | chr3.2:70788643-70788662 | MS.gene25781:intron | 55.0% |
| !! | AGAAATGGCGGACATGCCAC+TGG | + | chr3.2:70788312-70788331 | None:intergenic | 55.0% |
| !! | GCCAAATTCATGGCGGGCAT+TGG | + | chr3.2:70788087-70788106 | None:intergenic | 55.0% |
| AAGCCACAACATGTCCGCCG+TGG | + | chr3.2:70788358-70788377 | None:intergenic | 60.0% | |
| CGGCTGAGATTGAGGACGGT+TGG | + | chr3.2:70788245-70788264 | None:intergenic | 60.0% | |
| CTTCGAGGGCCGCCATCTTA+CGG | + | chr3.2:70788265-70788284 | None:intergenic | 60.0% | |
| GCCGGAGAGCTTGGTCATGA+AGG | - | chr3.2:70788188-70788207 | MS.gene25781:CDS | 60.0% | |
| GGAGCAGAAGTGGAGTCAGC+TGG | - | chr3.2:70789911-70789930 | MS.gene25781:CDS | 60.0% | |
| TCATGCGAAGGCCCAGGTGT+GGG | + | chr3.2:70789527-70789546 | None:intergenic | 60.0% | |
| TGTTGGCCCCAGCAGCATCA+TGG | + | chr3.2:70789466-70789485 | None:intergenic | 60.0% | |
| TTACAGCTCTGCAGCCACGG+CGG | - | chr3.2:70788341-70788360 | MS.gene25781:CDS | 60.0% | |
| TTCATGCGAAGGCCCAGGTG+TGG | + | chr3.2:70789528-70789547 | None:intergenic | 60.0% | |
| CAGCCACGGCGGACATGTTG+TGG | - | chr3.2:70788352-70788371 | MS.gene25781:CDS | 65.0% | |
| CATTGGCGAGTGCGGCCTCT+GGG | + | chr3.2:70788070-70788089 | None:intergenic | 65.0% | |
| ! | CGTAAGATGGCGGCCCTCGA+AGG | - | chr3.2:70788263-70788282 | MS.gene25781:CDS | 65.0% |
| !! | ATGGCGGGCATTGGCGAGTG+CGG | + | chr3.2:70788078-70788097 | None:intergenic | 65.0% |
| ! | GCATTGGCGAGTGCGGCCTC+TGG | + | chr3.2:70788071-70788090 | None:intergenic | 70.0% |
| !! | AGGCAGCCTCGGTGCCTTCG+AGG | + | chr3.2:70788280-70788299 | None:intergenic | 70.0% |
| !! | GGCAGCCTCGGTGCCTTCGA+GGG | + | chr3.2:70788279-70788298 | None:intergenic | 70.0% |
| !!! | GGCGGCCCTCGAAGGCACCG+AGG | - | chr3.2:70788271-70788290 | MS.gene25781:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 70787945 | 70789968 | 70787945 | ID=MS.gene25781 |
| chr3.2 | mRNA | 70787945 | 70789968 | 70787945 | ID=MS.gene25781.t1;Parent=MS.gene25781 |
| chr3.2 | exon | 70789197 | 70789968 | 70789197 | ID=MS.gene25781.t1.exon1;Parent=MS.gene25781.t1 |
| chr3.2 | CDS | 70789197 | 70789968 | 70789197 | ID=cds.MS.gene25781.t1;Parent=MS.gene25781.t1 |
| chr3.2 | exon | 70787945 | 70788504 | 70787945 | ID=MS.gene25781.t1.exon2;Parent=MS.gene25781.t1 |
| chr3.2 | CDS | 70787945 | 70788504 | 70787945 | ID=cds.MS.gene25781.t1;Parent=MS.gene25781.t1 |
| Gene Sequence |
| Protein sequence |
