Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25855.t1 | XP_003601331.1 | 98 | 352 | 7 | 0 | 1 | 352 | 1 | 352 | 7.60E-201 | 709.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25855.t1 | P38812 | 34.1 | 164 | 99 | 5 | 141 | 299 | 1 | 160 | 2.0e-16 | 88.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25855.t1 | G7IEQ2 | 98.0 | 352 | 7 | 0 | 1 | 352 | 1 | 352 | 5.5e-201 | 709.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05101 | MS.gene25855 | 0.821512 | 3.88E-53 | -1.69E-46 |
| MS.gene054376 | MS.gene25855 | 0.807872 | 4.09E-50 | -1.69E-46 |
| MS.gene059326 | MS.gene25855 | 0.813277 | 2.78E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25855.t1 | MTR_3g079530 | 98.011 | 352 | 7 | 0 | 1 | 352 | 1 | 352 | 0.0 | 720 |
| MS.gene25855.t1 | MTR_1g046360 | 97.159 | 352 | 10 | 0 | 1 | 352 | 1 | 352 | 0.0 | 718 |
| MS.gene25855.t1 | MTR_3g079530 | 97.778 | 315 | 7 | 0 | 1 | 315 | 1 | 315 | 0.0 | 642 |
| MS.gene25855.t1 | MTR_1g046360 | 97.143 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25855.t1 | AT3G58830 | 63.469 | 271 | 95 | 3 | 81 | 349 | 72 | 340 | 6.86e-118 | 345 |
| MS.gene25855.t1 | AT3G58830 | 63.469 | 271 | 95 | 3 | 81 | 349 | 77 | 345 | 6.96e-118 | 345 |
| MS.gene25855.t1 | AT3G58830 | 65.823 | 237 | 77 | 3 | 81 | 315 | 77 | 311 | 1.98e-105 | 313 |
Find 79 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTGTGGTTTCTGGTTTC+TGG | 0.057163 | 3.2:+69959951 | None:intergenic |
| CCCTTCACTGACATTGTTTA+TGG | 0.078059 | 3.2:-69959036 | MS.gene25855:CDS |
| TTGATGTTGACTGTGGTTTC+TGG | 0.127678 | 3.2:+69959944 | None:intergenic |
| GGAATGGGTTTCTAACTATT+TGG | 0.158847 | 3.2:-69959008 | MS.gene25855:CDS |
| ATATGGGGCAGTGACAATTT+TGG | 0.203302 | 3.2:+69959777 | None:intergenic |
| TCTACGTAGAAAGGGATTTA+AGG | 0.208357 | 3.2:-69959718 | MS.gene25855:CDS |
| CAAACCTGCTTAACAATAAA+TGG | 0.212685 | 3.2:+69958958 | None:intergenic |
| GAAGAAATTGAAAAGCATTT+TGG | 0.233420 | 3.2:-69959194 | MS.gene25855:CDS |
| TGCCCTCAAAGTTGATTCTT+TGG | 0.244850 | 3.2:+69959832 | None:intergenic |
| TTATATCAGGAACTGAAATA+TGG | 0.269807 | 3.2:+69959760 | None:intergenic |
| GGGAATGTGGTACGAGCAAC+TGG | 0.332306 | 3.2:+69960214 | None:intergenic |
| GAAAGTTGTAAATCAGAGTT+TGG | 0.356510 | 3.2:-69959618 | MS.gene25855:CDS |
| TCGTTGGGCATGATGATGTC+TGG | 0.366443 | 3.2:+69960193 | None:intergenic |
| GCCTCCACTTGAGTCTTCAT+TGG | 0.369973 | 3.2:-69959640 | MS.gene25855:CDS |
| AGAAGTATTTAATAAGGAAT+AGG | 0.381243 | 3.2:+69960009 | None:intergenic |
| CAGTCAATGTATCTTATATC+AGG | 0.381565 | 3.2:+69959747 | None:intergenic |
| TTTGTCGTTCTGATTTGAAT+TGG | 0.389014 | 3.2:+69960034 | None:intergenic |
| CTCTGTGTCTGAGGAAGACT+TGG | 0.390918 | 3.2:+69960101 | None:intergenic |
| CAAGTGAGAAGTATTTAATA+AGG | 0.394930 | 3.2:+69960003 | None:intergenic |
| TATATCAGGAACTGAAATAT+GGG | 0.405912 | 3.2:+69959761 | None:intergenic |
| GCAGATGTGAAAGCGGCATT+TGG | 0.416507 | 3.2:-69959855 | MS.gene25855:CDS |
| AGGAATCTTGAGAGTACAAT+TGG | 0.419350 | 3.2:-69959424 | MS.gene25855:CDS |
| GGGCATTCTATGTTCAACTA+TGG | 0.421228 | 3.2:-69959814 | MS.gene25855:CDS |
| CTGACATTGTTTATGGCAAT+CGG | 0.424991 | 3.2:-69959029 | MS.gene25855:CDS |
| AAGGGCTAGAAAGCAATTAC+AGG | 0.425208 | 3.2:-69960070 | MS.gene25855:CDS |
| TAGGATCTGGCAATAGCTTC+TGG | 0.429090 | 3.2:+69958604 | None:intergenic |
| TTGTTTATGGCAATCGGAAT+GGG | 0.438839 | 3.2:-69959023 | MS.gene25855:CDS |
| CTGATATAAGATACATTGAC+TGG | 0.441013 | 3.2:-69959746 | MS.gene25855:CDS |
| ATTTCTTCAGCTGTGCCACC+TGG | 0.452323 | 3.2:+69959209 | None:intergenic |
| GGAGCCATTTATTGTTAAGC+AGG | 0.454977 | 3.2:-69958962 | MS.gene25855:intron |
| AGAAGTTTCTCAGAGGGACT+TGG | 0.459372 | 3.2:+69960129 | None:intergenic |
| CTGGGCTGCTCTACGTAGAA+AGG | 0.459911 | 3.2:-69959727 | MS.gene25855:CDS |
| GGCCAAAGAATCAACTTTGA+GGG | 0.460017 | 3.2:-69959834 | MS.gene25855:CDS |
| CTACGTAGAAAGGGATTTAA+GGG | 0.460767 | 3.2:-69959717 | MS.gene25855:CDS |
| GGCTCCTCTGCAAGACTCAA+TGG | 0.471686 | 3.2:+69958979 | None:intergenic |
| GTCCCTCTGAGAAACTTCTA+TGG | 0.478928 | 3.2:-69960125 | MS.gene25855:CDS |
| AGACAGACAAAGGGAATTCA+AGG | 0.479391 | 3.2:-69959919 | MS.gene25855:CDS |
| TACCCTACTCTTTAACGCTC+TGG | 0.487917 | 3.2:-69959662 | MS.gene25855:CDS |
| TGGCCAAAGAATCAACTTTG+AGG | 0.489408 | 3.2:-69959835 | MS.gene25855:CDS |
| GTAAAGTACTGGTCTAGAAG+AGG | 0.490645 | 3.2:-69958642 | MS.gene25855:CDS |
| TTGACACAATGTCTAGGATC+TGG | 0.492519 | 3.2:+69958591 | None:intergenic |
| AAACTACATTTGTAAAGTAC+TGG | 0.493301 | 3.2:-69958653 | MS.gene25855:CDS |
| ATTGTTTATGGCAATCGGAA+TGG | 0.494457 | 3.2:-69959024 | MS.gene25855:CDS |
| GGCCAGAGCGTTAAAGAGTA+GGG | 0.506103 | 3.2:+69959660 | None:intergenic |
| GCTGTATTTAGTAACTCAGC+TGG | 0.507393 | 3.2:-69959585 | MS.gene25855:intron |
| TGGGCTGCTCTACGTAGAAA+GGG | 0.534826 | 3.2:-69959726 | MS.gene25855:CDS |
| AGGGACTTGGCTATCTGCAT+TGG | 0.544545 | 3.2:+69960142 | None:intergenic |
| AGGCCAGAGCGTTAAAGAGT+AGG | 0.550814 | 3.2:+69959659 | None:intergenic |
| TTGTTGCAACTCTGTGTCTG+AGG | 0.551570 | 3.2:+69960092 | None:intergenic |
| AACATCAACTAGACAGACAA+AGG | 0.555337 | 3.2:-69959929 | MS.gene25855:CDS |
| TAAAGTACTGGTCTAGAAGA+GGG | 0.555992 | 3.2:-69958641 | MS.gene25855:CDS |
| GCCATAAACAATGTCAGTGA+AGG | 0.556282 | 3.2:+69959035 | None:intergenic |
| AGACACAGAGTTGCAACAAA+GGG | 0.557784 | 3.2:-69960088 | MS.gene25855:CDS |
| CGTTGGGCATGATGATGTCT+GGG | 0.560325 | 3.2:+69960194 | None:intergenic |
| CCATAAACAATGTCAGTGAA+GGG | 0.567655 | 3.2:+69959036 | None:intergenic |
| CATGATGATGTCTGGGAATG+TGG | 0.568095 | 3.2:+69960201 | None:intergenic |
| GGCAATAGCTTCTGGTCAAG+TGG | 0.568702 | 3.2:+69958612 | None:intergenic |
| ACTGCAGGAGTGAAGAAGCC+AGG | 0.579048 | 3.2:-69959227 | MS.gene25855:intron |
| CAGACACAGAGTTGCAACAA+AGG | 0.579774 | 3.2:-69960089 | MS.gene25855:CDS |
| AGACAAGTCTATCAAGGATG+TGG | 0.585793 | 3.2:+69958561 | None:intergenic |
| ACATCAACTAGACAGACAAA+GGG | 0.586910 | 3.2:-69959928 | MS.gene25855:CDS |
| GACCATAGAAGTTTCTCAGA+GGG | 0.594094 | 3.2:+69960123 | None:intergenic |
| TGAAGCATCAGAGTTAATCA+TGG | 0.595342 | 3.2:-69959168 | MS.gene25855:intron |
| TGTCTAGTTGATGTTGACTG+TGG | 0.599422 | 3.2:+69959937 | None:intergenic |
| GGCTCTTTGACACAATGTCT+AGG | 0.619400 | 3.2:+69958585 | None:intergenic |
| CTTTCCAATGAAGACTCAAG+TGG | 0.631381 | 3.2:+69959636 | None:intergenic |
| ACCATGATGGTTCAAAAGCG+AGG | 0.633614 | 3.2:-69959444 | MS.gene25855:CDS |
| CTTCGTGAGTATGACCATGA+TGG | 0.634215 | 3.2:-69959457 | MS.gene25855:CDS |
| CAAGTCTATCAAGGATGTGG+CGG | 0.639966 | 3.2:+69958564 | None:intergenic |
| AGAGCCATTGAGTCTTGCAG+AGG | 0.643454 | 3.2:-69958983 | MS.gene25855:CDS |
| TGATATAAGATACATTGACT+GGG | 0.644285 | 3.2:-69959745 | MS.gene25855:CDS |
| TCCAATGAAGACTCAAGTGG+AGG | 0.644383 | 3.2:+69959639 | None:intergenic |
| CATAAACAATGTCAGTGAAG+GGG | 0.650053 | 3.2:+69959037 | None:intergenic |
| ATATCAGGAACTGAAATATG+GGG | 0.654119 | 3.2:+69959762 | None:intergenic |
| TGCATTGGCAAGTGATAGAG+TGG | 0.659077 | 3.2:+69960157 | None:intergenic |
| GGAATGTGGTACGAGCAACT+GGG | 0.693669 | 3.2:+69960215 | None:intergenic |
| GGACCATAGAAGTTTCTCAG+AGG | 0.703711 | 3.2:+69960122 | None:intergenic |
| GTGGTGGGCAGATGTGAAAG+CGG | 0.723068 | 3.2:-69959862 | MS.gene25855:CDS |
| GCAGGAGTGAAGAAGCCAGG+TGG | 0.732956 | 3.2:-69959224 | MS.gene25855:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTTAAACCATAAATATT+CGG | - | chr3.2:69959740-69959759 | MS.gene25855:CDS | 15.0% |
| !! | TTCATAAATTAAAATGTACA+AGG | + | chr3.2:69960040-69960059 | None:intergenic | 15.0% |
| !! | CAGAAAGAAATGTTTATAAA+TGG | + | chr3.2:69960098-69960117 | None:intergenic | 20.0% |
| !!! | AGAAGTATTTAATAAGGAAT+AGG | + | chr3.2:69958811-69958830 | None:intergenic | 20.0% |
| ! | AAACTACATTTGTAAAGTAC+TGG | - | chr3.2:69960164-69960183 | MS.gene25855:CDS | 25.0% |
| ! | TATATCAGGAACTGAAATAT+GGG | + | chr3.2:69959059-69959078 | None:intergenic | 25.0% |
| ! | TATGCTTATGTTAAAATGCT+AGG | - | chr3.2:69959508-69959527 | MS.gene25855:intron | 25.0% |
| ! | TTATATCAGGAACTGAAATA+TGG | + | chr3.2:69959060-69959079 | None:intergenic | 25.0% |
| !! | TGATATAAGATACATTGACT+GGG | - | chr3.2:69959072-69959091 | MS.gene25855:intron | 25.0% |
| !! | TTTGGTAAAAGTGTAGTTAA+AGG | - | chr3.2:69959995-69960014 | MS.gene25855:CDS | 25.0% |
| !!! | CAAGTGAGAAGTATTTAATA+AGG | + | chr3.2:69958817-69958836 | None:intergenic | 25.0% |
| !!! | GAAGAAATTGAAAAGCATTT+TGG | - | chr3.2:69959623-69959642 | MS.gene25855:CDS | 25.0% |
| !!! | TATGTAGTTTGATTTGATTC+AGG | - | chr3.2:69959715-69959734 | MS.gene25855:CDS | 25.0% |
| !!! | TTCAAACTTGTTCTGAAATT+TGG | - | chr3.2:69959274-69959293 | MS.gene25855:intron | 25.0% |
| ATACTTTGTATGTATACTGC+AGG | - | chr3.2:69959575-69959594 | MS.gene25855:intron | 30.0% | |
| ATATCAGGAACTGAAATATG+GGG | + | chr3.2:69959058-69959077 | None:intergenic | 30.0% | |
| CAAACCTGCTTAACAATAAA+TGG | + | chr3.2:69959862-69959881 | None:intergenic | 30.0% | |
| CAGTCAATGTATCTTATATC+AGG | + | chr3.2:69959073-69959092 | None:intergenic | 30.0% | |
| CTGATATAAGATACATTGAC+TGG | - | chr3.2:69959071-69959090 | MS.gene25855:intron | 30.0% | |
| GAAAGTTGTAAATCAGAGTT+TGG | - | chr3.2:69959199-69959218 | MS.gene25855:CDS | 30.0% | |
| TAGGATTGTGAAAATTCTGA+GGG | - | chr3.2:69959527-69959546 | MS.gene25855:intron | 30.0% | |
| ! | AGAATGTTTAGAGTGAAGTT+TGG | - | chr3.2:69959977-69959996 | MS.gene25855:CDS | 30.0% |
| ! | TCTTCATTGTTGTTGTAATC+AGG | - | chr3.2:69959336-69959355 | MS.gene25855:intron | 30.0% |
| ! | TTTGTCGTTCTGATTTGAAT+TGG | + | chr3.2:69958786-69958805 | None:intergenic | 30.0% |
| AACATCAACTAGACAGACAA+AGG | - | chr3.2:69958888-69958907 | MS.gene25855:intron | 35.0% | |
| AACCATAAATATTCGGATGC+AGG | - | chr3.2:69959747-69959766 | MS.gene25855:CDS | 35.0% | |
| ACATCAACTAGACAGACAAA+GGG | - | chr3.2:69958889-69958908 | MS.gene25855:intron | 35.0% | |
| ATAAATATTCGGATGCAGGT+GGG | - | chr3.2:69959751-69959770 | MS.gene25855:CDS | 35.0% | |
| ATTGTTTATGGCAATCGGAA+TGG | - | chr3.2:69959793-69959812 | MS.gene25855:CDS | 35.0% | |
| CATAAACAATGTCAGTGAAG+GGG | + | chr3.2:69959783-69959802 | None:intergenic | 35.0% | |
| CCATAAACAATGTCAGTGAA+GGG | + | chr3.2:69959784-69959803 | None:intergenic | 35.0% | |
| CTACGTAGAAAGGGATTTAA+GGG | - | chr3.2:69959100-69959119 | MS.gene25855:intron | 35.0% | |
| CTAGGATTGTGAAAATTCTG+AGG | - | chr3.2:69959526-69959545 | MS.gene25855:intron | 35.0% | |
| CTGACATTGTTTATGGCAAT+CGG | - | chr3.2:69959788-69959807 | MS.gene25855:CDS | 35.0% | |
| GTTTCAATGATCGTGATGAT+AGG | - | chr3.2:69960129-69960148 | MS.gene25855:CDS | 35.0% | |
| TCTACGTAGAAAGGGATTTA+AGG | - | chr3.2:69959099-69959118 | MS.gene25855:intron | 35.0% | |
| TTGTTTATGGCAATCGGAAT+GGG | - | chr3.2:69959794-69959813 | MS.gene25855:CDS | 35.0% | |
| ! | ACTTTTCACTAAGATGTGGT+GGG | - | chr3.2:69958940-69958959 | MS.gene25855:intron | 35.0% |
| ! | AGGAATCTTGAGAGTACAAT+TGG | - | chr3.2:69959393-69959412 | MS.gene25855:intron | 35.0% |
| ! | GGAATGGGTTTCTAACTATT+TGG | - | chr3.2:69959809-69959828 | MS.gene25855:CDS | 35.0% |
| ! | TGAAGCATCAGAGTTAATCA+TGG | - | chr3.2:69959649-69959668 | MS.gene25855:CDS | 35.0% |
| !! | TAAAGTACTGGTCTAGAAGA+GGG | - | chr3.2:69960176-69960195 | MS.gene25855:CDS | 35.0% |
| !!! | GGTTTCTGGATTTTGATTAC+TGG | + | chr3.2:69958855-69958874 | None:intergenic | 35.0% |
| AAGGGCTAGAAAGCAATTAC+AGG | - | chr3.2:69958747-69958766 | MS.gene25855:intron | 40.0% | |
| AATGATCGTGATGATAGGTG+AGG | - | chr3.2:69960134-69960153 | MS.gene25855:CDS | 40.0% | |
| AGACACAGAGTTGCAACAAA+GGG | - | chr3.2:69958729-69958748 | MS.gene25855:intron | 40.0% | |
| AGACAGACAAAGGGAATTCA+AGG | - | chr3.2:69958898-69958917 | MS.gene25855:intron | 40.0% | |
| CACCTGCATCCGAATATTTA+TGG | + | chr3.2:69959752-69959771 | None:intergenic | 40.0% | |
| CATAAATATTCGGATGCAGG+TGG | - | chr3.2:69959750-69959769 | MS.gene25855:CDS | 40.0% | |
| CCCTTCACTGACATTGTTTA+TGG | - | chr3.2:69959781-69959800 | MS.gene25855:CDS | 40.0% | |
| CTTTCCAATGAAGACTCAAG+TGG | + | chr3.2:69959184-69959203 | None:intergenic | 40.0% | |
| GACCATAGAAGTTTCTCAGA+GGG | + | chr3.2:69958697-69958716 | None:intergenic | 40.0% | |
| GCCATAAACAATGTCAGTGA+AGG | + | chr3.2:69959785-69959804 | None:intergenic | 40.0% | |
| GCTGTATTTAGTAACTCAGC+TGG | - | chr3.2:69959232-69959251 | MS.gene25855:intron | 40.0% | |
| GGAGCCATTTATTGTTAAGC+AGG | - | chr3.2:69959855-69959874 | MS.gene25855:CDS | 40.0% | |
| GGCCAAAGAATCAACTTTGA+GGG | - | chr3.2:69958983-69959002 | MS.gene25855:CDS | 40.0% | |
| GGGCATTCTATGTTCAACTA+TGG | - | chr3.2:69959003-69959022 | MS.gene25855:CDS | 40.0% | |
| TGGCCAAAGAATCAACTTTG+AGG | - | chr3.2:69958982-69959001 | MS.gene25855:CDS | 40.0% | |
| ! | ATATGGGGCAGTGACAATTT+TGG | + | chr3.2:69959043-69959062 | None:intergenic | 40.0% |
| ! | CACTTTTCACTAAGATGTGG+TGG | - | chr3.2:69958939-69958958 | MS.gene25855:intron | 40.0% |
| ! | GGTGAGTTTTCTCTTTCGTT+GGG | + | chr3.2:69958642-69958661 | None:intergenic | 40.0% |
| ! | GTGCACTTTTCACTAAGATG+TGG | - | chr3.2:69958936-69958955 | MS.gene25855:intron | 40.0% |
| ! | TATGGGGCAGTGACAATTTT+GGG | + | chr3.2:69959042-69959061 | None:intergenic | 40.0% |
| ! | TGCCCTCAAAGTTGATTCTT+TGG | + | chr3.2:69958988-69959007 | None:intergenic | 40.0% |
| ! | TGGTGAGTTTTCTCTTTCGT+TGG | + | chr3.2:69958643-69958662 | None:intergenic | 40.0% |
| ! | TGTCTAGTTGATGTTGACTG+TGG | + | chr3.2:69958883-69958902 | None:intergenic | 40.0% |
| ! | TTGACACAATGTCTAGGATC+TGG | + | chr3.2:69960229-69960248 | None:intergenic | 40.0% |
| ! | TTGATGTTGACTGTGGTTTC+TGG | + | chr3.2:69958876-69958895 | None:intergenic | 40.0% |
| !! | GTAAAGTACTGGTCTAGAAG+AGG | - | chr3.2:69960175-69960194 | MS.gene25855:CDS | 40.0% |
| !!! | TGAGTGGTGCTTTTTCTGTA+TGG | - | chr3.2:69959437-69959456 | MS.gene25855:CDS | 40.0% |
| AAGTCATCAGACACAGTGAG+TGG | - | chr3.2:69959421-69959440 | MS.gene25855:CDS | 45.0% | |
| ACCATGATGGTTCAAAAGCG+AGG | - | chr3.2:69959373-69959392 | MS.gene25855:intron | 45.0% | |
| AGAAGTTTCTCAGAGGGACT+TGG | + | chr3.2:69958691-69958710 | None:intergenic | 45.0% | |
| CAGACACAGAGTTGCAACAA+AGG | - | chr3.2:69958728-69958747 | MS.gene25855:intron | 45.0% | |
| CTTCGTGAGTATGACCATGA+TGG | - | chr3.2:69959360-69959379 | MS.gene25855:intron | 45.0% | |
| GGACCATAGAAGTTTCTCAG+AGG | + | chr3.2:69958698-69958717 | None:intergenic | 45.0% | |
| GGCTCTTTGACACAATGTCT+AGG | + | chr3.2:69960235-69960254 | None:intergenic | 45.0% | |
| TACCCTACTCTTTAACGCTC+TGG | - | chr3.2:69959155-69959174 | MS.gene25855:intron | 45.0% | |
| TAGGATCTGGCAATAGCTTC+TGG | + | chr3.2:69960216-69960235 | None:intergenic | 45.0% | |
| TCCAATGAAGACTCAAGTGG+AGG | + | chr3.2:69959181-69959200 | None:intergenic | 45.0% | |
| TTGTTGCAACTCTGTGTCTG+AGG | + | chr3.2:69958728-69958747 | None:intergenic | 45.0% | |
| ! | CATGATGATGTCTGGGAATG+TGG | + | chr3.2:69958619-69958638 | None:intergenic | 45.0% |
| ! | GTCCCTCTGAGAAACTTCTA+TGG | - | chr3.2:69958692-69958711 | MS.gene25855:intron | 45.0% |
| ! | TGCATTGGCAAGTGATAGAG+TGG | + | chr3.2:69958663-69958682 | None:intergenic | 45.0% |
| !! | TCCTCGCTTTTGAACCATCA+TGG | + | chr3.2:69959377-69959396 | None:intergenic | 45.0% |
| !! | TGACTGTGGTTTCTGGTTTC+TGG | + | chr3.2:69958869-69958888 | None:intergenic | 45.0% |
| AGAGCCATTGAGTCTTGCAG+AGG | - | chr3.2:69959834-69959853 | MS.gene25855:CDS | 50.0% | |
| AGGGACTTGGCTATCTGCAT+TGG | + | chr3.2:69958678-69958697 | None:intergenic | 50.0% | |
| ATTTCTTCAGCTGTGCCACC+TGG | + | chr3.2:69959611-69959630 | None:intergenic | 50.0% | |
| CTCTGTGTCTGAGGAAGACT+TGG | + | chr3.2:69958719-69958738 | None:intergenic | 50.0% | |
| GCAGATGTGAAAGCGGCATT+TGG | - | chr3.2:69958962-69958981 | MS.gene25855:intron | 50.0% | |
| GCCTCCACTTGAGTCTTCAT+TGG | - | chr3.2:69959177-69959196 | MS.gene25855:CDS | 50.0% | |
| GGAATGTGGTACGAGCAACT+GGG | + | chr3.2:69958605-69958624 | None:intergenic | 50.0% | |
| GGCAATAGCTTCTGGTCAAG+TGG | + | chr3.2:69960208-69960227 | None:intergenic | 50.0% | |
| TGGGCTGCTCTACGTAGAAA+GGG | - | chr3.2:69959091-69959110 | MS.gene25855:intron | 50.0% | |
| ! | AGGCCAGAGCGTTAAAGAGT+AGG | + | chr3.2:69959161-69959180 | None:intergenic | 50.0% |
| ! | CGTTGGGCATGATGATGTCT+GGG | + | chr3.2:69958626-69958645 | None:intergenic | 50.0% |
| ! | GGCCAGAGCGTTAAAGAGTA+GGG | + | chr3.2:69959160-69959179 | None:intergenic | 50.0% |
| ! | TCGTTGGGCATGATGATGTC+TGG | + | chr3.2:69958627-69958646 | None:intergenic | 50.0% |
| ACTGCAGGAGTGAAGAAGCC+AGG | - | chr3.2:69959590-69959609 | MS.gene25855:CDS | 55.0% | |
| CTGGGCTGCTCTACGTAGAA+AGG | - | chr3.2:69959090-69959109 | MS.gene25855:intron | 55.0% | |
| GGCTCCTCTGCAAGACTCAA+TGG | + | chr3.2:69959841-69959860 | None:intergenic | 55.0% | |
| GGGAATGTGGTACGAGCAAC+TGG | + | chr3.2:69958606-69958625 | None:intergenic | 55.0% | |
| !! | GTGGTGGGCAGATGTGAAAG+CGG | - | chr3.2:69958955-69958974 | MS.gene25855:intron | 55.0% |
| GCAGGAGTGAAGAAGCCAGG+TGG | - | chr3.2:69959593-69959612 | MS.gene25855:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 69958572 | 69960267 | 69958572 | ID=MS.gene25855 |
| chr3.2 | mRNA | 69958572 | 69960267 | 69958572 | ID=MS.gene25855.t1;Parent=MS.gene25855 |
| chr3.2 | exon | 69959586 | 69960267 | 69959586 | ID=MS.gene25855.t1.exon1;Parent=MS.gene25855.t1 |
| chr3.2 | CDS | 69959586 | 69960267 | 69959586 | ID=cds.MS.gene25855.t1;Parent=MS.gene25855.t1 |
| chr3.2 | exon | 69959404 | 69959481 | 69959404 | ID=MS.gene25855.t1.exon2;Parent=MS.gene25855.t1 |
| chr3.2 | CDS | 69959404 | 69959481 | 69959404 | ID=cds.MS.gene25855.t1;Parent=MS.gene25855.t1 |
| chr3.2 | exon | 69959169 | 69959242 | 69959169 | ID=MS.gene25855.t1.exon3;Parent=MS.gene25855.t1 |
| chr3.2 | CDS | 69959169 | 69959242 | 69959169 | ID=cds.MS.gene25855.t1;Parent=MS.gene25855.t1 |
| chr3.2 | exon | 69958963 | 69959070 | 69958963 | ID=MS.gene25855.t1.exon4;Parent=MS.gene25855.t1 |
| chr3.2 | CDS | 69958963 | 69959070 | 69958963 | ID=cds.MS.gene25855.t1;Parent=MS.gene25855.t1 |
| chr3.2 | exon | 69958572 | 69958688 | 69958572 | ID=MS.gene25855.t1.exon5;Parent=MS.gene25855.t1 |
| chr3.2 | CDS | 69958572 | 69958688 | 69958572 | ID=cds.MS.gene25855.t1;Parent=MS.gene25855.t1 |
| Gene Sequence |
| Protein sequence |
