Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25875.t1 | XP_003601325.2 | 96.8 | 841 | 26 | 1 | 1 | 841 | 63 | 902 | 0.00E+00 | 1657.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25875.t1 | O24370 | 58.9 | 839 | 337 | 8 | 8 | 841 | 64 | 899 | 2.6e-296 | 1019.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25875.t1 | G7J632 | 96.8 | 841 | 26 | 1 | 1 | 841 | 63 | 902 | 0.0e+00 | 1657.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050520 | MS.gene25875 | 0.827544 | 1.48E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25875.t1 | MTR_3g079450 | 97.027 | 841 | 24 | 1 | 1 | 841 | 63 | 902 | 0.0 | 1697 |
MS.gene25875.t1 | MTR_3g479460 | 78.266 | 842 | 181 | 2 | 1 | 841 | 63 | 903 | 0.0 | 1409 |
MS.gene25875.t1 | MTR_3g079420 | 80.519 | 847 | 153 | 4 | 6 | 841 | 20 | 865 | 0.0 | 1385 |
MS.gene25875.t1 | MTR_3g079450 | 96.774 | 589 | 18 | 1 | 1 | 589 | 63 | 650 | 0.0 | 1180 |
MS.gene25875.t1 | MTR_4g066170 | 61.171 | 837 | 309 | 8 | 16 | 841 | 75 | 906 | 0.0 | 1081 |
MS.gene25875.t1 | MTR_8g020970 | 48.089 | 811 | 404 | 10 | 41 | 840 | 122 | 926 | 0.0 | 804 |
MS.gene25875.t1 | MTR_8g080230 | 47.393 | 844 | 419 | 13 | 16 | 841 | 80 | 916 | 0.0 | 790 |
MS.gene25875.t1 | MTR_1g104650 | 43.773 | 827 | 431 | 15 | 40 | 841 | 39 | 856 | 0.0 | 672 |
MS.gene25875.t1 | MTR_1g083020 | 44.903 | 775 | 411 | 9 | 76 | 841 | 91 | 858 | 0.0 | 667 |
MS.gene25875.t1 | MTR_2g099570 | 41.947 | 863 | 460 | 16 | 3 | 841 | 16 | 861 | 0.0 | 666 |
MS.gene25875.t1 | MTR_4g088810 | 42.080 | 846 | 443 | 15 | 12 | 840 | 79 | 894 | 0.0 | 666 |
MS.gene25875.t1 | MTR_8g018420 | 43.571 | 840 | 428 | 19 | 26 | 841 | 39 | 856 | 0.0 | 658 |
MS.gene25875.t1 | MTR_8g018690 | 42.563 | 827 | 441 | 15 | 30 | 841 | 58 | 865 | 0.0 | 647 |
MS.gene25875.t1 | MTR_2g099560 | 42.684 | 827 | 447 | 14 | 29 | 841 | 50 | 863 | 0.0 | 646 |
MS.gene25875.t1 | MTR_8g018735 | 41.475 | 827 | 449 | 14 | 32 | 841 | 57 | 865 | 0.0 | 646 |
MS.gene25875.t1 | MTR_8g018730 | 41.338 | 837 | 451 | 14 | 28 | 841 | 45 | 864 | 0.0 | 645 |
MS.gene25875.t1 | MTR_7g113410 | 42.597 | 824 | 446 | 14 | 37 | 841 | 52 | 867 | 0.0 | 640 |
MS.gene25875.t1 | MTR_8g018510 | 44.444 | 774 | 405 | 14 | 79 | 841 | 110 | 869 | 0.0 | 640 |
MS.gene25875.t1 | MTR_8g018570 | 42.308 | 832 | 449 | 16 | 27 | 841 | 53 | 870 | 0.0 | 639 |
MS.gene25875.t1 | MTR_8g018520 | 44.243 | 773 | 408 | 14 | 79 | 841 | 109 | 868 | 0.0 | 637 |
MS.gene25875.t1 | MTR_8g018430 | 41.647 | 862 | 469 | 15 | 2 | 841 | 12 | 861 | 0.0 | 634 |
MS.gene25875.t1 | MTR_8g020990 | 42.169 | 830 | 451 | 15 | 27 | 841 | 53 | 868 | 0.0 | 634 |
MS.gene25875.t1 | MTR_8g018730 | 41.007 | 834 | 428 | 14 | 28 | 841 | 45 | 834 | 0.0 | 628 |
MS.gene25875.t1 | MTR_5g024020 | 39.976 | 848 | 468 | 15 | 16 | 841 | 39 | 867 | 0.0 | 626 |
MS.gene25875.t1 | MTR_8g018550 | 41.570 | 866 | 466 | 16 | 3 | 841 | 16 | 868 | 0.0 | 619 |
MS.gene25875.t1 | MTR_8g018450 | 40.328 | 853 | 462 | 16 | 1 | 841 | 11 | 828 | 0.0 | 616 |
MS.gene25875.t1 | MTR_8g018690 | 41.354 | 827 | 431 | 16 | 30 | 841 | 58 | 845 | 0.0 | 616 |
MS.gene25875.t1 | MTR_3g081130 | 40.191 | 836 | 462 | 15 | 28 | 841 | 39 | 858 | 0.0 | 614 |
MS.gene25875.t1 | MTR_3g081130 | 41.548 | 775 | 432 | 12 | 75 | 841 | 25 | 786 | 0.0 | 604 |
MS.gene25875.t1 | MTR_5g024020 | 38.325 | 848 | 446 | 15 | 16 | 841 | 39 | 831 | 0.0 | 589 |
MS.gene25875.t1 | MTR_8g018590 | 42.257 | 762 | 397 | 15 | 93 | 841 | 92 | 823 | 0.0 | 575 |
MS.gene25875.t1 | MTR_8g018650 | 42.084 | 758 | 389 | 10 | 86 | 841 | 98 | 807 | 0.0 | 552 |
MS.gene25875.t1 | MTR_8g018620 | 41.524 | 761 | 389 | 11 | 86 | 841 | 98 | 807 | 0.0 | 549 |
MS.gene25875.t1 | MTR_8g011340 | 38.820 | 729 | 422 | 13 | 79 | 796 | 107 | 822 | 0.0 | 543 |
MS.gene25875.t1 | MTR_8g020970 | 46.953 | 558 | 284 | 7 | 41 | 589 | 122 | 676 | 7.42e-179 | 531 |
MS.gene25875.t1 | MTR_8g018730 | 42.419 | 587 | 316 | 10 | 264 | 841 | 11 | 584 | 9.86e-161 | 481 |
MS.gene25875.t1 | MTR_8g018735 | 40.734 | 572 | 306 | 13 | 35 | 589 | 60 | 615 | 4.95e-135 | 416 |
MS.gene25875.t1 | MTR_6g452500 | 35.940 | 601 | 361 | 13 | 232 | 824 | 21 | 605 | 2.55e-125 | 390 |
MS.gene25875.t1 | MTR_8g021020 | 42.925 | 424 | 236 | 4 | 421 | 841 | 11 | 431 | 2.18e-112 | 350 |
MS.gene25875.t1 | MTR_8g463810 | 58.190 | 232 | 33 | 2 | 394 | 625 | 190 | 357 | 4.04e-77 | 256 |
MS.gene25875.t1 | MTR_7g012030 | 73.109 | 119 | 32 | 0 | 491 | 609 | 85 | 203 | 2.14e-59 | 201 |
MS.gene25875.t1 | MTR_6g046330 | 66.154 | 130 | 33 | 1 | 491 | 609 | 75 | 204 | 1.17e-53 | 189 |
MS.gene25875.t1 | MTR_2g067130 | 53.684 | 95 | 40 | 2 | 4 | 95 | 2 | 95 | 1.35e-18 | 84.0 |
MS.gene25875.t1 | MTR_4g088805 | 47.253 | 91 | 47 | 1 | 751 | 840 | 1 | 91 | 1.33e-16 | 76.3 |
MS.gene25875.t1 | MTR_5g052190 | 73.469 | 49 | 7 | 1 | 228 | 276 | 45 | 87 | 5.50e-12 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25875.t1 | AT3G45140 | 53.837 | 808 | 357 | 7 | 38 | 841 | 101 | 896 | 0.0 | 915 |
MS.gene25875.t1 | AT3G45140 | 55.585 | 761 | 327 | 6 | 85 | 841 | 1 | 754 | 0.0 | 895 |
MS.gene25875.t1 | AT1G72520 | 47.867 | 844 | 413 | 15 | 16 | 841 | 92 | 926 | 0.0 | 807 |
MS.gene25875.t1 | AT1G17420 | 46.793 | 842 | 424 | 11 | 16 | 841 | 86 | 919 | 0.0 | 793 |
MS.gene25875.t1 | AT1G67560 | 46.420 | 810 | 416 | 12 | 43 | 841 | 115 | 917 | 0.0 | 746 |
MS.gene25875.t1 | AT1G55020 | 46.659 | 823 | 409 | 14 | 37 | 841 | 49 | 859 | 0.0 | 708 |
MS.gene25875.t1 | AT3G22400 | 43.075 | 852 | 449 | 15 | 17 | 841 | 44 | 886 | 0.0 | 677 |
Find 163 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTCATTCCAAAGTTCTTTA+AGG | 0.084556 | 3.2:+69791910 | MS.gene25875:CDS |
CTAGCAATTGTTGGTCTATT+AGG | 0.092716 | 3.2:-69793737 | None:intergenic |
CATGTTCTTGTTCATGATTC+TGG | 0.145766 | 3.2:+69792748 | MS.gene25875:CDS |
CCAATGACGGTCTTCTAATA+TGG | 0.163070 | 3.2:+69793456 | MS.gene25875:CDS |
TTTGAGTTACCAGCAAATTT+TGG | 0.176746 | 3.2:+69785541 | MS.gene25875:CDS |
AACTTACTCTTGTATGGTTC+CGG | 0.228161 | 3.2:-69791971 | None:intergenic |
TTAACCAATTGGATGCTATA+TGG | 0.237885 | 3.2:-69792158 | None:intergenic |
GTGGCCTTTGAAAAGTAAAT+TGG | 0.239348 | 3.2:+69792297 | MS.gene25875:CDS |
ATCAGTGACTATTGCGTCTA+AGG | 0.241076 | 3.2:-69791786 | None:intergenic |
TATCAAAGCGCACGATATTT+TGG | 0.241301 | 3.2:-69791946 | None:intergenic |
TGGAAATGTGGGTGCTGTTT+TGG | 0.252907 | 3.2:+69785561 | MS.gene25875:CDS |
TGGTAACAAACACTTAATTT+TGG | 0.253312 | 3.2:+69783567 | MS.gene25875:CDS |
TGTACCAAACTAGGTTTAAA+TGG | 0.259190 | 3.2:-69794140 | None:intergenic |
CTGTGTGTTGCAATTATAAT+AGG | 0.269350 | 3.2:-69792902 | None:intergenic |
CCAACCAGAGCAAACACTTT+TGG | 0.289754 | 3.2:+69793814 | MS.gene25875:CDS |
TAGCAATTGTTGGTCTATTA+GGG | 0.301680 | 3.2:-69793736 | None:intergenic |
GTGACTCCAGGCCCTGAAAA+TGG | 0.302315 | 3.2:-69794091 | None:intergenic |
TCTTTGGCAATTTGATTTGC+AGG | 0.304593 | 3.2:+69793096 | MS.gene25875:CDS |
GTGAAGAAAACTCTCTTTGT+AGG | 0.307177 | 3.2:-69785697 | None:intergenic |
CTAAAGAATATAGTCCTTGA+TGG | 0.311025 | 3.2:+69785613 | MS.gene25875:CDS |
ATTCTGATTCCACCAATATC+TGG | 0.318341 | 3.2:+69792704 | MS.gene25875:CDS |
TTTACACAATATGCTTATAT+AGG | 0.319058 | 3.2:+69793707 | MS.gene25875:CDS |
ATTCTGGTGGACCATAGATT+TGG | 0.321973 | 3.2:-69792324 | None:intergenic |
TTGGAGAAAATTTGAGTCAT+TGG | 0.322729 | 3.2:-69791885 | None:intergenic |
GAGTCATTGGATTCAAGATT+TGG | 0.327319 | 3.2:-69791872 | None:intergenic |
TTCACTCCATGTTGTGCATT+AGG | 0.341211 | 3.2:-69793407 | None:intergenic |
GTGCGACAGCGTCTAGGATA+TGG | 0.341556 | 3.2:-69791453 | None:intergenic |
TCGAAGGGAGAGACAATAAA+AGG | 0.356789 | 3.2:+69785466 | MS.gene25875:CDS |
TCTCTAGTAATTGCTGATTC+TGG | 0.358260 | 3.2:-69792340 | None:intergenic |
CTCATCAAGAATATTGTTAC+TGG | 0.359156 | 3.2:+69783538 | MS.gene25875:CDS |
CTCAGCTTTCTTAATCCACT+TGG | 0.360020 | 3.2:-69791279 | None:intergenic |
TTAAGGTGGACCGGGCCATC+AGG | 0.361255 | 3.2:-69785640 | None:intergenic |
CTGTGGCATATGATAATCTT+TGG | 0.361879 | 3.2:+69793080 | MS.gene25875:CDS |
ACTTACTCTTGTATGGTTCC+GGG | 0.363410 | 3.2:-69791970 | None:intergenic |
TGTTTGAACTTACTCTTGTA+TGG | 0.364028 | 3.2:-69791977 | None:intergenic |
TGTCCAATGTACTCTTCATC+TGG | 0.364172 | 3.2:-69793905 | None:intergenic |
AATACTTCTGCCGTATCTTT+AGG | 0.368151 | 3.2:+69791743 | MS.gene25875:CDS |
CATTGTGCCTTTCCATCAAT+AGG | 0.368981 | 3.2:-69792661 | None:intergenic |
ATAGTCACTGATATAAATCT+TGG | 0.370327 | 3.2:+69791797 | MS.gene25875:CDS |
CCCACATTTCCAAAATTTGC+TGG | 0.375304 | 3.2:-69785550 | None:intergenic |
ATTGAGGGAACAACACTATA+TGG | 0.375357 | 3.2:+69792568 | MS.gene25875:CDS |
TTAGCATCCTTAAAGAACTT+TGG | 0.376602 | 3.2:-69791917 | None:intergenic |
TCAATATTCCTTCACTAGTA+AGG | 0.377393 | 3.2:-69792609 | None:intergenic |
AATATTGTTACTGGTATTGT+TGG | 0.378392 | 3.2:+69783547 | MS.gene25875:CDS |
TACCTATTGATAAGATCATT+TGG | 0.383516 | 3.2:-69793124 | None:intergenic |
TCGAAAAGAATGATATTTCA+AGG | 0.388151 | 3.2:-69793033 | None:intergenic |
GGGTGAGAATTCAACTATAA+AGG | 0.389284 | 3.2:+69793946 | MS.gene25875:CDS |
ATATTGGTGGAATCAGAATT+AGG | 0.390188 | 3.2:-69792700 | None:intergenic |
GACCTCAAAAGACCTGTTCT+TGG | 0.394205 | 3.2:+69791414 | MS.gene25875:CDS |
GAATCCATGATTGACAATTA+AGG | 0.395271 | 3.2:-69785657 | None:intergenic |
GTACTCCTTTCTTCATATAG+TGG | 0.399010 | 3.2:-69791662 | None:intergenic |
GGTCGAAAGCATTCTGATAC+AGG | 0.402041 | 3.2:+69791477 | MS.gene25875:CDS |
CCACCAATATCTGGCTTTGG+AGG | 0.402930 | 3.2:+69792713 | MS.gene25875:CDS |
AAGCCTCCAAAGCCAGATAT+TGG | 0.404646 | 3.2:-69792716 | None:intergenic |
TAACCAATTGGATGCTATAT+GGG | 0.408073 | 3.2:-69792157 | None:intergenic |
CTCACTAGACCACCTATTGA+TGG | 0.408363 | 3.2:+69792649 | MS.gene25875:CDS |
ATTCCACCAATATCTGGCTT+TGG | 0.411670 | 3.2:+69792710 | MS.gene25875:CDS |
AAATTGGATGCCCAAATCTA+TGG | 0.413135 | 3.2:+69792313 | MS.gene25875:CDS |
TTGAGGTCAGTGGTTATGTC+AGG | 0.413159 | 3.2:-69791399 | None:intergenic |
TCCACCTTAATTGTCAATCA+TGG | 0.416550 | 3.2:+69785653 | MS.gene25875:CDS |
CCATATTAGAAGACCGTCAT+TGG | 0.419135 | 3.2:-69793456 | None:intergenic |
CATTCCAAAAGTGTTTGCTC+TGG | 0.419934 | 3.2:-69793818 | None:intergenic |
TTCTGGTGGACCATAGATTT+GGG | 0.421786 | 3.2:-69792323 | None:intergenic |
GTTTAAATGGATATGCTGTA+TGG | 0.426545 | 3.2:-69794127 | None:intergenic |
GTCCTTGATGGTTTCCCTGA+TGG | 0.427910 | 3.2:+69785625 | MS.gene25875:CDS |
TTGTAGGGGATAGATTCTTT+TGG | 0.428079 | 3.2:+69792090 | MS.gene25875:intron |
CCAAAAGTGTTTGCTCTGGT+TGG | 0.436594 | 3.2:-69793814 | None:intergenic |
TCCTTAGTAGGGTCTTCTGT+TGG | 0.439100 | 3.2:-69793770 | None:intergenic |
TTTGTAGGAGTATCATGCTT+AGG | 0.439282 | 3.2:-69785682 | None:intergenic |
TTTCCCATTCTTCCTTAGTA+GGG | 0.440122 | 3.2:-69793781 | None:intergenic |
TCTAGGATATGGATATTGTT+TGG | 0.442196 | 3.2:-69791442 | None:intergenic |
ATGTCCATGCCTTAACCAAT+TGG | 0.451067 | 3.2:-69792169 | None:intergenic |
AAGACCCTACTAAGGAAGAA+TGG | 0.454559 | 3.2:+69793777 | MS.gene25875:CDS |
TCTCTCAGTTTGCTAACATA+TGG | 0.455221 | 3.2:-69792544 | None:intergenic |
ATGGGATGCAATTAAACAAT+GGG | 0.457493 | 3.2:+69793475 | MS.gene25875:CDS |
GGGCCTGGAGTCACTGGAAA+AGG | 0.458638 | 3.2:+69794100 | MS.gene25875:CDS |
ATAGAAGCAATTTACAAAGA+AGG | 0.458987 | 3.2:+69791839 | MS.gene25875:CDS |
ATGAACAAGAACATGAGCTT+TGG | 0.461543 | 3.2:-69792740 | None:intergenic |
TAGACTCAAGGAATGAAGAT+AGG | 0.461905 | 3.2:+69794017 | MS.gene25875:CDS |
AATGGCTTTAATGACTCATA+AGG | 0.463312 | 3.2:-69794073 | None:intergenic |
GAATCTCTGTCCACCATGCT+TGG | 0.465030 | 3.2:-69793559 | None:intergenic |
TATGACGTCTACAATGATCT+TGG | 0.466404 | 3.2:+69791372 | MS.gene25875:CDS |
TGTTTGGTGCCACCAAGAAC+AGG | 0.467750 | 3.2:-69791426 | None:intergenic |
GGCACCAGCCAAAGTCTCTC+TGG | 0.472557 | 3.2:-69792132 | None:intergenic |
TTCCAAATGATCTTATCAAT+AGG | 0.473141 | 3.2:+69793122 | MS.gene25875:CDS |
CAATGACGGTCTTCTAATAT+GGG | 0.476498 | 3.2:+69793457 | MS.gene25875:CDS |
CTAATAGAACTAAGAGGGAA+TGG | 0.477908 | 3.2:+69791312 | MS.gene25875:CDS |
ATATAGCATCCAATTGGTTA+AGG | 0.478204 | 3.2:+69792160 | MS.gene25875:CDS |
GATGAGCTAATAGAACTAAG+AGG | 0.478619 | 3.2:+69791306 | MS.gene25875:CDS |
AGACCCTACTAAGGAAGAAT+GGG | 0.480218 | 3.2:+69793778 | MS.gene25875:CDS |
TGATGGTTTCCCTGATGGCC+CGG | 0.480524 | 3.2:+69785630 | MS.gene25875:CDS |
TTTGCCAGAGAGACTTTGGC+TGG | 0.481032 | 3.2:+69792128 | MS.gene25875:CDS |
ATAAGAGTAGTGATGGCAAA+AGG | 0.486600 | 3.2:+69783442 | None:intergenic |
TAGTCACTGATATAAATCTT+GGG | 0.491052 | 3.2:+69791798 | MS.gene25875:CDS |
GGAATTTGCCAGAGAGACTT+TGG | 0.496070 | 3.2:+69792124 | MS.gene25875:CDS |
TAGCAAACTGAGAGAGATTG+AGG | 0.496616 | 3.2:+69792552 | MS.gene25875:CDS |
CTAGTAATTGCTGATTCTGG+TGG | 0.502077 | 3.2:-69792337 | None:intergenic |
GATTCAAGAATGTCTGAGCT+TGG | 0.509066 | 3.2:-69793524 | None:intergenic |
TTGAAGAATAGACATGGAGC+TGG | 0.509740 | 3.2:+69794043 | MS.gene25875:CDS |
CAACCCATATAGCATCCAAT+TGG | 0.511275 | 3.2:+69792154 | MS.gene25875:CDS |
GATTGACAATTAAGGTGGAC+CGG | 0.512595 | 3.2:-69785649 | None:intergenic |
ATCATGAACTTATAAGCCAT+TGG | 0.514400 | 3.2:+69792773 | MS.gene25875:CDS |
TACTCCTTTCTTCATATAGT+GGG | 0.517291 | 3.2:-69791661 | None:intergenic |
AGAAGACCGTCATTGGCAAA+AGG | 0.518247 | 3.2:-69793449 | None:intergenic |
AGATGCTGTCCAAGCTATAG+TGG | 0.518404 | 3.2:-69793663 | None:intergenic |
AATGTTGCTTGAATTTGTGA+TGG | 0.521479 | 3.2:-69793845 | None:intergenic |
AGGAGATTGAATGAAATTGA+AGG | 0.525552 | 3.2:+69793989 | MS.gene25875:CDS |
ACATCATTACCACTATAGCT+TGG | 0.532589 | 3.2:+69793654 | MS.gene25875:CDS |
GAACTAAGAGGGAATGGAGA+AGG | 0.533603 | 3.2:+69791318 | MS.gene25875:CDS |
AACTTATAGCACAGTTGAAG+AGG | 0.540223 | 3.2:+69792384 | MS.gene25875:CDS |
CTCAAAAGACCTGTTCTTGG+TGG | 0.540243 | 3.2:+69791417 | MS.gene25875:CDS |
TTTAAATGGATATGCTGTAT+GGG | 0.542203 | 3.2:-69794126 | None:intergenic |
GCCAACAGAAGACCCTACTA+AGG | 0.544940 | 3.2:+69793769 | MS.gene25875:CDS |
CAGACCCACTATATGAAGAA+AGG | 0.547760 | 3.2:+69791657 | MS.gene25875:intron |
CAATTGGATGCTATATGGGT+TGG | 0.548678 | 3.2:-69792153 | None:intergenic |
AATCCACTTGGTGTTTGTGA+TGG | 0.549751 | 3.2:-69791267 | None:intergenic |
TGTAGTCAAGCCTAAAGATA+CGG | 0.551843 | 3.2:-69791753 | None:intergenic |
CGACCGGTGCGACAGCGTCT+AGG | 0.553844 | 3.2:-69791459 | None:intergenic |
CGCAACTTTATTGATCTCCA+TGG | 0.555615 | 3.2:-69792981 | None:intergenic |
GGCCATCAGGGAAACCATCA+AGG | 0.563223 | 3.2:-69785627 | None:intergenic |
TAAGGTGGACCGGGCCATCA+GGG | 0.564095 | 3.2:-69785639 | None:intergenic |
TATGGGATGCAATTAAACAA+TGG | 0.570977 | 3.2:+69793474 | MS.gene25875:CDS |
CCTCCAAAGCCAGATATTGG+TGG | 0.572821 | 3.2:-69792713 | None:intergenic |
GAAGTTCTCATTAATGCAAG+TGG | 0.573211 | 3.2:+69793007 | MS.gene25875:CDS |
TATCCTAGACGCTGTCGCAC+CGG | 0.575164 | 3.2:+69791456 | MS.gene25875:CDS |
TTGAAGGTATTATAGACTCA+AGG | 0.576809 | 3.2:+69794005 | MS.gene25875:CDS |
ATGAGCTAATAGAACTAAGA+GGG | 0.582546 | 3.2:+69791307 | MS.gene25875:CDS |
CTTACTCTTGTATGGTTCCG+GGG | 0.587013 | 3.2:-69791969 | None:intergenic |
GTTGAATTCTCACCCCAAGA+TGG | 0.587735 | 3.2:-69793938 | None:intergenic |
TAGACCACCTATTGATGGAA+AGG | 0.590035 | 3.2:+69792654 | MS.gene25875:CDS |
AGCAAACTGAGAGAGATTGA+GGG | 0.591240 | 3.2:+69792553 | MS.gene25875:CDS |
TGTATCAGAATGCTTTCGAC+CGG | 0.595298 | 3.2:-69791475 | None:intergenic |
TGTGCCTTTCCATCAATAGG+TGG | 0.601759 | 3.2:-69792658 | None:intergenic |
TTACCATCACAAACACCAAG+TGG | 0.605695 | 3.2:+69791264 | MS.gene25875:CDS |
CATCCTTTGAAAAGTTACAA+AGG | 0.609574 | 3.2:+69793969 | MS.gene25875:CDS |
GCATGAAGAAGCAAACTCGA+AGG | 0.610739 | 3.2:+69785450 | MS.gene25875:intron |
ATTGACAATTAAGGTGGACC+GGG | 0.614834 | 3.2:-69785648 | None:intergenic |
TCAGCAAATGCCTCGTCACG+AGG | 0.615936 | 3.2:-69791701 | None:intergenic |
CTTCTATGTTCCTCGTGACG+AGG | 0.615973 | 3.2:+69791691 | MS.gene25875:CDS |
TCCATGGTATATCTCAGATG+TGG | 0.618261 | 3.2:-69792965 | None:intergenic |
CTAGTGAGCTCAATAGCTAG+TGG | 0.619729 | 3.2:-69792634 | None:intergenic |
TCACCAGATGAAGAGTACAT+TGG | 0.620155 | 3.2:+69793902 | MS.gene25875:CDS |
CTCTCTGGCAAATTCCACAT+CGG | 0.621861 | 3.2:-69792117 | None:intergenic |
CATGAAGAAGCAAACTCGAA+GGG | 0.623114 | 3.2:+69785451 | MS.gene25875:intron |
TCCATGATTGACAATTAAGG+TGG | 0.624709 | 3.2:-69785654 | None:intergenic |
TATCGTGCGCTTTGATACCC+CGG | 0.626726 | 3.2:+69791952 | MS.gene25875:CDS |
GCTAAGAACTCATTGTGTTG+TGG | 0.627066 | 3.2:+69792877 | MS.gene25875:CDS |
CTGATCAAGAGCTCCAAGCA+TGG | 0.628834 | 3.2:+69793546 | MS.gene25875:CDS |
TGGACAGAGATTCGAACAGT+GGG | 0.633544 | 3.2:+69793569 | MS.gene25875:CDS |
AGGAATTTGAAGAATAGACA+TGG | 0.634907 | 3.2:+69794037 | MS.gene25875:CDS |
CAGTAACAATATTCTTGATG+AGG | 0.640270 | 3.2:-69783537 | None:intergenic |
AAAAGCTTTAGTGAGTGTGA+AGG | 0.645031 | 3.2:+69783501 | MS.gene25875:CDS |
CGGACAAATCTGAAGAACCA+TGG | 0.653620 | 3.2:+69793597 | MS.gene25875:CDS |
TCCACATCTGAGATATACCA+TGG | 0.656207 | 3.2:+69792964 | MS.gene25875:CDS |
CTATTGATGGAAAGGCACAA+TGG | 0.657974 | 3.2:+69792662 | MS.gene25875:CDS |
TACAATGGAGTTAAGCTCTG+TGG | 0.664172 | 3.2:+69793063 | MS.gene25875:CDS |
GAAGATCCTAATGCACAACA+TGG | 0.666470 | 3.2:+69793401 | MS.gene25875:CDS |
ATCAAGAGCTCCAAGCATGG+TGG | 0.666595 | 3.2:+69793549 | MS.gene25875:CDS |
GATTCGAACAGTGGGACATG+CGG | 0.669148 | 3.2:+69793577 | MS.gene25875:CDS |
GTGGACAGAGATTCGAACAG+TGG | 0.669638 | 3.2:+69793568 | MS.gene25875:CDS |
GTGAGTGTGAAGGAAAGTGA+TGG | 0.706550 | 3.2:+69783511 | MS.gene25875:CDS |
AGTGTGAAGGAAAGTGATGG+TGG | 0.718611 | 3.2:+69783514 | MS.gene25875:CDS |
ACAAATCTGAAGAACCATGG+TGG | 0.731842 | 3.2:+69793600 | MS.gene25875:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 69783454 | 69794147 | 69783454 | ID=MS.gene25875 |
chr3.2 | mRNA | 69783454 | 69794147 | 69783454 | ID=MS.gene25875.t1;Parent=MS.gene25875 |
chr3.2 | exon | 69783454 | 69783616 | 69783454 | ID=MS.gene25875.t1.exon1;Parent=MS.gene25875.t1 |
chr3.2 | CDS | 69783454 | 69783616 | 69783454 | ID=cds.MS.gene25875.t1;Parent=MS.gene25875.t1 |
chr3.2 | exon | 69785458 | 69785726 | 69785458 | ID=MS.gene25875.t1.exon2;Parent=MS.gene25875.t1 |
chr3.2 | CDS | 69785458 | 69785726 | 69785458 | ID=cds.MS.gene25875.t1;Parent=MS.gene25875.t1 |
chr3.2 | exon | 69791258 | 69791498 | 69791258 | ID=MS.gene25875.t1.exon3;Parent=MS.gene25875.t1 |
chr3.2 | CDS | 69791258 | 69791498 | 69791258 | ID=cds.MS.gene25875.t1;Parent=MS.gene25875.t1 |
chr3.2 | exon | 69791660 | 69791986 | 69791660 | ID=MS.gene25875.t1.exon4;Parent=MS.gene25875.t1 |
chr3.2 | CDS | 69791660 | 69791986 | 69791660 | ID=cds.MS.gene25875.t1;Parent=MS.gene25875.t1 |
chr3.2 | exon | 69792096 | 69792181 | 69792096 | ID=MS.gene25875.t1.exon5;Parent=MS.gene25875.t1 |
chr3.2 | CDS | 69792096 | 69792181 | 69792096 | ID=cds.MS.gene25875.t1;Parent=MS.gene25875.t1 |
chr3.2 | exon | 69792295 | 69792405 | 69792295 | ID=MS.gene25875.t1.exon6;Parent=MS.gene25875.t1 |
chr3.2 | CDS | 69792295 | 69792405 | 69792295 | ID=cds.MS.gene25875.t1;Parent=MS.gene25875.t1 |
chr3.2 | exon | 69792493 | 69792794 | 69792493 | ID=MS.gene25875.t1.exon7;Parent=MS.gene25875.t1 |
chr3.2 | CDS | 69792493 | 69792794 | 69792493 | ID=cds.MS.gene25875.t1;Parent=MS.gene25875.t1 |
chr3.2 | exon | 69792877 | 69793143 | 69792877 | ID=MS.gene25875.t1.exon8;Parent=MS.gene25875.t1 |
chr3.2 | CDS | 69792877 | 69793143 | 69792877 | ID=cds.MS.gene25875.t1;Parent=MS.gene25875.t1 |
chr3.2 | exon | 69793388 | 69794147 | 69793388 | ID=MS.gene25875.t1.exon9;Parent=MS.gene25875.t1 |
chr3.2 | CDS | 69793388 | 69794147 | 69793388 | ID=cds.MS.gene25875.t1;Parent=MS.gene25875.t1 |
Gene Sequence |
Protein sequence |