AlfalfaGEDB | MS.gene26091

M. sativa cultivar XinJiangDaYe / MS.gene26091

KEGG: K11266
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26091.t1	XP_003616084.1	77.5	138	29	1	85	222	244	379	3.70E-47	198.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26091.t1	Q9FGN7	46.4	138	71	2	85	222	242	376	4.3e-20	99.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26091.t1	G7K5W1	77.5	138	29	1	85	222	244	379	2.6e-47	198.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051594	MS.gene26091	0.800866	1.18E-48	-1.69E-46
MS.gene052208	MS.gene26091	0.816979	4.18E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26091.t1	MTR_5g075970	77.536	138	29	1	85	222	244	379	8.91e-63	208
MS.gene26091.t1	MTR_5g075970	69.091	55	17	0	37	91	326	380	8.65e-18	82.0
MS.gene26091.t1	MTR_6g049450	80.000	55	11	0	168	222	257	311	1.44e-20	90.1
MS.gene26091.t1	MTR_6g049450	69.091	55	17	0	37	91	258	312	4.68e-17	79.7
MS.gene26091.t1	MTR_5g078560	84.091	44	7	0	41	84	57	100	1.44e-17	75.5
MS.gene26091.t1	MTR_5g078560	72.727	44	12	0	175	218	59	102	1.57e-11	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26091.t1	AT5G51340	50.485	103	50	1	120	222	275	376	6.32e-22	94.0

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Find 51 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCAAACACAGCAT+AGG	0.626769	5.4:-56421166	MS.gene26091:CDS
AACAGCTGAGAAACATGAAT+GGG	0.548330	5.4:-56421031	MS.gene26091:CDS
AACTAATTAAGAGATTGCCT+AGG	0.546434	5.4:+56423394	None:intergenic
AAGAGCAGGATCACTTCCCT+AGG	0.566701	5.4:-56423411	MS.gene26091:CDS
AAGAGGAAGGAAATAAGCCC+TGG	0.568599	5.4:+56423437	None:intergenic
AATAGTGAAGGAGCTAGTGA+AGG	0.620883	5.4:-56421201	MS.gene26091:intron
ACAACAACTATCAGATCAAC+TGG	0.434611	5.4:+56420876	None:intergenic
ACACAGCATAGGCACGAGCT+AGG	0.526453	5.4:-56421155	MS.gene26091:CDS
ACTAATTAAGAGATTGCCTA+GGG	0.571438	5.4:+56423395	None:intergenic
AGCACCACCTCCTATCGATG+TGG	0.637799	5.4:-56423196	MS.gene26091:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCATGAGTGACTAATT+TGG	+	chr5.4:56421360-56421379	None:intergenic	30.0%
AAATCCATTTGCACGAATAA+CGG	+	chr5.4:56421600-56421619	None:intergenic	30.0%
AACTAATTAAGAGATTGCCT+AGG	+	chr5.4:56420856-56420875	None:intergenic	30.0%
ACCTAATCTAGACTAGAAAT+TGG	+	chr5.4:56422669-56422688	None:intergenic	30.0%
ACTAATTAAGAGATTGCCTA+GGG	+	chr5.4:56420855-56420874	None:intergenic	30.0%
ATCAATCAAAAGCCAAAAGA+AGG	+	chr5.4:56421227-56421246	None:intergenic	30.0%
ATGTAGTATGTGAACCAAAA+TGG	-	chr5.4:56422738-56422757	MS.gene26091:intron	30.0%
ATTTCCATATTGTTCTTTGC+TGG	-	chr5.4:56421616-56421635	MS.gene26091:intron	30.0%
CAAAAAGAGGAAAACAAAAC+AGG	-	chr5.4:56421834-56421853	MS.gene26091:intron	30.0%
CATTGATCATGATTTCAGAA+AGG	+	chr5.4:56421564-56421583	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	56420791	56423478	56420791	ID=MS.gene26091
chr5.4	mRNA	56420791	56423478	56420791	ID=MS.gene26091.t1;Parent=MS.gene26091
chr5.4	exon	56423370	56423478	56423370	ID=MS.gene26091.t1.exon1;Parent=MS.gene26091.t1
chr5.4	CDS	56423370	56423478	56423370	ID=cds.MS.gene26091.t1;Parent=MS.gene26091.t1
chr5.4	exon	56423091	56423234	56423091	ID=MS.gene26091.t1.exon2;Parent=MS.gene26091.t1
chr5.4	CDS	56423091	56423234	56423091	ID=cds.MS.gene26091.t1;Parent=MS.gene26091.t1
chr5.4	exon	56420791	56421218	56420791	ID=MS.gene26091.t1.exon3;Parent=MS.gene26091.t1
chr5.4	CDS	56420791	56421218	56420791	ID=cds.MS.gene26091.t1;Parent=MS.gene26091.t1

Gene Sequence

>MS.gene26091

ATGCCATTAATTGGTGGGACCAGGGCTTATTTCCTTCCTCTTTTCAAGAGCAGGATCACTTCCCTAGGCAATCTCTTAATTAGTTCAAGTTTTTTAGCGTGGTTCACTGGTACGTGTATTTCCAAGAATTCCCTTGCGAATTTTGGCGAACCGGTTCGTGAAAGTACCGCGAACCGGTTCGTGCGAACCGGTTCGTGGTTCTCAGGCTAGTACACGAATTCTGTGACTATGGGCAGGACACTAGGAGATAAGCTTCATTCAGCACCACCTCCTATCGATGTGGAATGGCTTCCTAAAAGTGTTGTCTATGCACTAGTTGATCTGATAGTTGTTGTATTTGGGAGCCCAAAAAGACTTTTTAAGGTGGGCGGAAAGCGCATACAGTCTGGTATGCGATAATTCAAGGTTTTCAGCATAACTTTGAATGAAATTTCCTTCTTTTGGCTTTTGATTGATCTATTGCTTGTAGCCTACATCATTAGACTGCAAGTACAATTGCTAATTTTGAATCCAAAATAGAAATCGCTTGTTATGATATATGAATCAAATATGTATTAATATGCTGTCCAAATTAGTCACTCATGGTTTTTGTGTTGTCTGAGTTATACCTTTTCACTTGCACTTCCACCGCCTATAGTCGTTACTACTTGCCTGATATTCTATATGTCCAATCACAGTCGTAAAATGTCTTTTCTGTCGGTTTCTAGGATTTAATGTCAAATGCATTTTTGAAACATCGTATGATGAGAAGCATCACTCCTTTGGATTATCCTTTCTGAAATCATGATCAATGTATTGATTTGTTTCCGTTATTCGTGCAAATGGATTTCCATATTGTTCTTTGCTGGTTTGCATTGCTGTGGAGACTGAGTAATCCTTGCCACTTTCAACTCATTTTCCTTATGATAATAATTTTTCTTCCTTATGAATGTAATCCTTGAAAATAATTTTTCTTCCTTGGAAACTGAATAATTTTTCTTCCTTATGAATAAGAGGAGAAGAAGGGAATGGAGGGAACTTAAAAAATATGGAAATACATAGTACAAAAAGAGGAAAACAAAACAGGGCTTGTTTGCAACAATGATATACTTGAGAAAACTCAAGTCATTGGCGATTGGATATTCATCAAGTGATAGATAACTGAAACTGTTTTGTATTGCATAGCTAAAATGAGTTTTTAGCATTCAAAACAGTTCGAGTTTGTTTTGCCCATCTTTCTTTTCCTTTTTATGTTGATTTGGTGTTTTGTTCTATTGAACTTCAAGTCTCGTTTAGTATCCACCTTATTAGCTGGTATGCTTCTGGTGATATTTTTCTTGTACTAGTGTAGCGGATTTGAAAAGTTGGCAGTAAATTTGCATCCTGTTATGCTTAAAATTTGAAATAATTAATGGCATTCTGTGCAAATTTTTGGGCTTTGATACAGATAAAAAATTGTTTAGTTAGTGAATTTGAAAAATTGGCAGTGAATTTGCATCCTGTTATACTTCAGATTTGAAATTTATTATTGGCATTCTTTGCAAATTTCAGGCTTTGGTACAGATTTGAAATTGTTTGGTTCAGATTATGACTCAAAGCGAAAGTGCTTTGACTGATGCAATAGATGATTAGCATGGCGATGAGAACTCACAGTTCATGAAGTAAGGACAACATCTTAGAAGGGGCTATGAAACATCAAGTTAGGACCATGACATTAGAATGACCCGGATTTAGACCTCACGTTTTCTACATCTGAGGGATACAAAGGAGAAGCATCTTGCCAAACTAAATCATGATCCAGAGCCATTGCTTTCAGATATCTCATAGTTATCTTTAGTGCAATTGAGTGATTCTGCAGGGTTTGGGACAAACTGGCACACTTTATTAACAACATATCCAATTTCTAGTCTAGATTAGGTCACATACTGCAGGGCACGAACTATGGACCTGCACCTGGCAAGATATACCATGTAGTATGTGAACCAAAATGGGACAACATAGGATTCCTTTGAAATAGGTAGAGATACCTTTGGTAGAGGCCATCTCTGCTATTTTAGAGTAAAGACAACATTATCATGATTTATGTTATAACATATAAGTTGTAATTTATGTGATCAAATTTTAAAGTAATTCGCCTATTATCATGATCGTGGTTTACAGACATCGGCTAGATACCTATAATGCTATTTCACATATAAGTCTAATATTGATATTTTCTATTTTTGAATGACTGAATTATGTTTTATTACATATAATACGTTCTATGCCAACATTTCAATAGTGAAGGAGCTAGTGAAGGAGCTGAAGGCTGAAAAGAAGCAAACACAGCATAGGCACGAGCTAGGGAAGGAGCTCAGTGCTTTAGATCAAAGTCTTTCCAGTTCCAGGTCTGATCTTCACTACAGGGAAAGAGACGCACTGTCAGAAAAGAAAGCAACGATTCAAGAACAGCTGAGAAACATGAATGGGTTCAGTTCAATTGGGAGGGAATATCTTGAATCAGTATATTTTGGGAATGGCAGAACGACACTAGGAGATAAGCTTCAGTTAGCACCATCTCTTATCGATGGAGAATGGCTTCCTAAAAGTGATGTCTATGCACCAGTTGATCTGATAGTTGTTGTATTTGGGTGCCCAAAAAAGCTTTTTAAGGAGTGTGGAAAGCGCTTACAGTCGGGGATGTGTATAATTCAAGGTTGTTCAACATAA

Protein sequence

>MS.gene26091.t1

MPLIGGTRAYFLPLFKSRITSLGNLLISSSFLAWFTGDKLHSAPPPIDVEWLPKSVVYALVDLIVVVFGSPKRLFKVGGKRIQSVKELVKELKAEKKQTQHRHELGKELSALDQSLSSSRSDLHYRERDALSEKKATIQEQLRNMNGFSSIGREYLESVYFGNGRTTLGDKLQLAPSLIDGEWLPKSDVYAPVDLIVVVFGCPKKLFKECGKRLQSGMCIIQGCST