Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26091.t1 | XP_003616084.1 | 77.5 | 138 | 29 | 1 | 85 | 222 | 244 | 379 | 3.70E-47 | 198.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26091.t1 | Q9FGN7 | 46.4 | 138 | 71 | 2 | 85 | 222 | 242 | 376 | 4.3e-20 | 99.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26091.t1 | G7K5W1 | 77.5 | 138 | 29 | 1 | 85 | 222 | 244 | 379 | 2.6e-47 | 198.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051594 | MS.gene26091 | 0.800866 | 1.18E-48 | -1.69E-46 |
| MS.gene052208 | MS.gene26091 | 0.816979 | 4.18E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26091.t1 | MTR_5g075970 | 77.536 | 138 | 29 | 1 | 85 | 222 | 244 | 379 | 8.91e-63 | 208 |
| MS.gene26091.t1 | MTR_5g075970 | 69.091 | 55 | 17 | 0 | 37 | 91 | 326 | 380 | 8.65e-18 | 82.0 |
| MS.gene26091.t1 | MTR_6g049450 | 80.000 | 55 | 11 | 0 | 168 | 222 | 257 | 311 | 1.44e-20 | 90.1 |
| MS.gene26091.t1 | MTR_6g049450 | 69.091 | 55 | 17 | 0 | 37 | 91 | 258 | 312 | 4.68e-17 | 79.7 |
| MS.gene26091.t1 | MTR_5g078560 | 84.091 | 44 | 7 | 0 | 41 | 84 | 57 | 100 | 1.44e-17 | 75.5 |
| MS.gene26091.t1 | MTR_5g078560 | 72.727 | 44 | 12 | 0 | 175 | 218 | 59 | 102 | 1.57e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26091.t1 | AT5G51340 | 50.485 | 103 | 50 | 1 | 120 | 222 | 275 | 376 | 6.32e-22 | 94.0 |
Find 51 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTTGAATCAGTATATTT+TGG | 0.103251 | 5.4:-56420987 | MS.gene26091:CDS |
| GATCTGATAGTTGTTGTATT+TGG | 0.236744 | 5.4:-56423138 | MS.gene26091:CDS |
| GAGATTCCCATGCCATTAAT+TGG | 0.269748 | 5.4:-56423465 | None:intergenic |
| GATCTGATAGTTGTTGTATT+TGG | 0.278509 | 5.4:-56420870 | MS.gene26091:CDS |
| ATCAAAGTCTTTCCAGTTCC+AGG | 0.280895 | 5.4:-56421112 | MS.gene26091:CDS |
| ATCTGATAGTTGTTGTATTT+GGG | 0.291382 | 5.4:-56420869 | MS.gene26091:CDS |
| ATCTGATAGTTGTTGTATTT+GGG | 0.305898 | 5.4:-56423137 | MS.gene26091:CDS |
| ATGAATGGGTTCAGTTCAAT+TGG | 0.315950 | 5.4:-56421017 | MS.gene26091:CDS |
| GCCCTGGTCCCACCAATTAA+TGG | 0.316685 | 5.4:+56423453 | None:intergenic |
| TGCCATTAATTGGTGGGACC+AGG | 0.426645 | 5.4:-56423455 | MS.gene26091:CDS |
| ACAACAACTATCAGATCAAC+TGG | 0.434611 | 5.4:+56420876 | None:intergenic |
| GTGAAGATCAGACCTGGAAC+TGG | 0.461240 | 5.4:+56421100 | None:intergenic |
| CCAGGTCTGATCTTCACTAC+AGG | 0.465404 | 5.4:-56421094 | MS.gene26091:CDS |
| TGTGGAAAGCGCTTACAGTC+GGG | 0.494575 | 5.4:-56420822 | MS.gene26091:CDS |
| GGCGGAAAGCGCATACAGTC+TGG | 0.511131 | 5.4:-56423090 | MS.gene26091:intron |
| TCGGGGATGTGTATAATTCA+AGG | 0.515356 | 5.4:-56420804 | MS.gene26091:CDS |
| CATCTCTTATCGATGGAGAA+TGG | 0.520553 | 5.4:-56420923 | MS.gene26091:CDS |
| TGAATGGGTTCAGTTCAATT+GGG | 0.525092 | 5.4:-56421016 | MS.gene26091:CDS |
| ACACAGCATAGGCACGAGCT+AGG | 0.526453 | 5.4:-56421155 | MS.gene26091:CDS |
| GTCCCACCAATTAATGGCAT+GGG | 0.533247 | 5.4:+56423459 | None:intergenic |
| GTGTGGAAAGCGCTTACAGT+CGG | 0.533624 | 5.4:-56420823 | MS.gene26091:CDS |
| GGTCCCACCAATTAATGGCA+TGG | 0.536491 | 5.4:+56423458 | None:intergenic |
| GTGATCCTGCTCTTGAAAAG+AGG | 0.539520 | 5.4:+56423420 | None:intergenic |
| GGGAATGGCAGAACGACACT+AGG | 0.544679 | 5.4:-56420966 | MS.gene26091:CDS |
| AACTAATTAAGAGATTGCCT+AGG | 0.546434 | 5.4:+56423394 | None:intergenic |
| GCCATTAATTGGTGGGACCA+GGG | 0.547798 | 5.4:-56423454 | MS.gene26091:CDS |
| AACAGCTGAGAAACATGAAT+GGG | 0.548330 | 5.4:-56421031 | MS.gene26091:CDS |
| TTCCCATGCCATTAATTGGT+GGG | 0.548619 | 5.4:-56423461 | None:intergenic |
| GGAAGCCATTCCACATCGAT+AGG | 0.553560 | 5.4:+56423186 | None:intergenic |
| GGAGCTAGTGAAGGAGCTGA+AGG | 0.555780 | 5.4:-56421192 | MS.gene26091:CDS |
| GAACAGCTGAGAAACATGAA+TGG | 0.557631 | 5.4:-56421032 | MS.gene26091:CDS |
| AAGAGCAGGATCACTTCCCT+AGG | 0.566701 | 5.4:-56423411 | MS.gene26091:CDS |
| AAGAGGAAGGAAATAAGCCC+TGG | 0.568599 | 5.4:+56423437 | None:intergenic |
| CACAGCATAGGCACGAGCTA+GGG | 0.568797 | 5.4:-56421154 | MS.gene26091:CDS |
| TGGGTTCAGTTCAATTGGGA+GGG | 0.569968 | 5.4:-56421012 | MS.gene26091:CDS |
| ACTAATTAAGAGATTGCCTA+GGG | 0.571438 | 5.4:+56423395 | None:intergenic |
| ATTCCCATGCCATTAATTGG+TGG | 0.574334 | 5.4:-56423462 | None:intergenic |
| CCTGTAGTGAAGATCAGACC+TGG | 0.579186 | 5.4:+56421094 | None:intergenic |
| CACCTCCTATCGATGTGGAA+TGG | 0.587605 | 5.4:-56423191 | MS.gene26091:CDS |
| TTAGCACCATCTCTTATCGA+TGG | 0.587659 | 5.4:-56420930 | MS.gene26091:CDS |
| TCCTGCTCTTGAAAAGAGGA+AGG | 0.593075 | 5.4:+56423424 | None:intergenic |
| CATTCCACATCGATAGGAGG+TGG | 0.600528 | 5.4:+56423192 | None:intergenic |
| CAGGTCTGATCTTCACTACA+GGG | 0.605048 | 5.4:-56421093 | MS.gene26091:CDS |
| CATTCTCCATCGATAAGAGA+TGG | 0.605696 | 5.4:+56420924 | None:intergenic |
| ATGGGTTCAGTTCAATTGGG+AGG | 0.607181 | 5.4:-56421013 | MS.gene26091:CDS |
| GTGGAAAGCGCTTACAGTCG+GGG | 0.615328 | 5.4:-56420821 | MS.gene26091:CDS |
| AATAGTGAAGGAGCTAGTGA+AGG | 0.620883 | 5.4:-56421201 | MS.gene26091:intron |
| GCATAGGCACGAGCTAGGGA+AGG | 0.624203 | 5.4:-56421150 | MS.gene26091:CDS |
| AGCCATTCCACATCGATAGG+AGG | 0.624456 | 5.4:+56423189 | None:intergenic |
| AAAAGAAGCAAACACAGCAT+AGG | 0.626769 | 5.4:-56421166 | MS.gene26091:CDS |
| AGCACCACCTCCTATCGATG+TGG | 0.637799 | 5.4:-56423196 | MS.gene26091:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAGAAAAATTATTATCATA+AGG | + | chr5.4:56421692-56421711 | None:intergenic | 15.0% |
| !!! | TCAGATTTGAAATTTATTAT+TGG | - | chr5.4:56422279-56422298 | MS.gene26091:intron | 15.0% |
| !! | AGTTAGTGAATTTGAAAAAT+TGG | - | chr5.4:56422231-56422250 | MS.gene26091:intron | 20.0% |
| !! | ATAAAAAGGAAAAGAAAGAT+GGG | + | chr5.4:56422002-56422021 | None:intergenic | 20.0% |
| !! | TATATGTGAAATAGCATTAT+AGG | + | chr5.4:56422947-56422966 | None:intergenic | 20.0% |
| !!! | AGGAAGAAAAATTATTTTCA+AGG | + | chr5.4:56421729-56421748 | None:intergenic | 20.0% |
| !!! | ATCTTGAATCAGTATATTTT+GGG | - | chr5.4:56423261-56423280 | MS.gene26091:intron | 20.0% |
| !!! | TATCTTGAATCAGTATATTT+TGG | - | chr5.4:56423260-56423279 | MS.gene26091:intron | 20.0% |
| !!! | TGAAAATAATTTTTCTTCCT+TGG | - | chr5.4:56421729-56421748 | MS.gene26091:intron | 20.0% |
| !!! | TTTCAAATTTTAAGCATAAC+AGG | + | chr5.4:56422155-56422174 | None:intergenic | 20.0% |
| !!! | TTTTCCTTTTTATGTTGATT+TGG | - | chr5.4:56422009-56422028 | MS.gene26091:intron | 20.0% |
| ! | AAAAAGAGGAAAACAAAACA+GGG | - | chr5.4:56421835-56421854 | MS.gene26091:intron | 25.0% |
| ! | AACACCAAATCAACATAAAA+AGG | + | chr5.4:56422016-56422035 | None:intergenic | 25.0% |
| ! | ATCTGATAGTTGTTGTATTT+GGG | - | chr5.4:56421110-56421129 | MS.gene26091:CDS | 25.0% |
| ! | CATAAAAAGGAAAAGAAAGA+TGG | + | chr5.4:56422003-56422022 | None:intergenic | 25.0% |
| ! | GAAAAATTATTCAGTTTCCA+AGG | + | chr5.4:56421749-56421768 | None:intergenic | 25.0% |
| ! | GAAATACATAGTACAAAAAG+AGG | - | chr5.4:56421821-56421840 | MS.gene26091:intron | 25.0% |
| ! | TTTCAAGGATTACATTCATA+AGG | + | chr5.4:56421714-56421733 | None:intergenic | 25.0% |
| !! | ATAACAAGCGATTTCTATTT+TGG | + | chr5.4:56421304-56421323 | None:intergenic | 25.0% |
| !! | TGAATGAAATTTCCTTCTTT+TGG | - | chr5.4:56421212-56421231 | MS.gene26091:intron | 25.0% |
| !! | TTTCAAATCTGAAGTATAAC+AGG | + | chr5.4:56422271-56422290 | None:intergenic | 25.0% |
| !! | TTTTCTTCCTTATGAATAAG+AGG | - | chr5.4:56421764-56421783 | MS.gene26091:intron | 25.0% |
| !!! | ACTCCTTAAAAAGCTTTTTT+GGG | + | chr5.4:56423406-56423425 | None:intergenic | 25.0% |
| AAAACCATGAGTGACTAATT+TGG | + | chr5.4:56421360-56421379 | None:intergenic | 30.0% | |
| AAATCCATTTGCACGAATAA+CGG | + | chr5.4:56421600-56421619 | None:intergenic | 30.0% | |
| AACTAATTAAGAGATTGCCT+AGG | + | chr5.4:56420856-56420875 | None:intergenic | 30.0% | |
| ACCTAATCTAGACTAGAAAT+TGG | + | chr5.4:56422669-56422688 | None:intergenic | 30.0% | |
| ACTAATTAAGAGATTGCCTA+GGG | + | chr5.4:56420855-56420874 | None:intergenic | 30.0% | |
| ATCAATCAAAAGCCAAAAGA+AGG | + | chr5.4:56421227-56421246 | None:intergenic | 30.0% | |
| ATGTAGTATGTGAACCAAAA+TGG | - | chr5.4:56422738-56422757 | MS.gene26091:intron | 30.0% | |
| ATTTCCATATTGTTCTTTGC+TGG | - | chr5.4:56421616-56421635 | MS.gene26091:intron | 30.0% | |
| CAAAAAGAGGAAAACAAAAC+AGG | - | chr5.4:56421834-56421853 | MS.gene26091:intron | 30.0% | |
| CATTGATCATGATTTCAGAA+AGG | + | chr5.4:56421564-56421583 | None:intergenic | 30.0% | |
| GATCTGATAGTTGTTGTATT+TGG | - | chr5.4:56421109-56421128 | MS.gene26091:CDS | 30.0% | |
| GATTGGACATATAGAATATC+AGG | + | chr5.4:56421444-56421463 | None:intergenic | 30.0% | |
| TAAACCACGATCATGATAAT+AGG | + | chr5.4:56422907-56422926 | None:intergenic | 30.0% | |
| TATGAATAAGAGGAGAAGAA+GGG | - | chr5.4:56421774-56421793 | MS.gene26091:intron | 30.0% | |
| TATGAGATATCTGAAAGCAA+TGG | + | chr5.4:56422576-56422595 | None:intergenic | 30.0% | |
| TGGAGGGAACTTAAAAAATA+TGG | - | chr5.4:56421799-56421818 | MS.gene26091:intron | 30.0% | |
| TGTAGTATGTGAACCAAAAT+GGG | - | chr5.4:56422739-56422758 | MS.gene26091:intron | 30.0% | |
| TTATGAATAAGAGGAGAAGA+AGG | - | chr5.4:56421773-56421792 | MS.gene26091:intron | 30.0% | |
| TTCTTCTCCTCTTATTCATA+AGG | + | chr5.4:56421774-56421793 | None:intergenic | 30.0% | |
| TTTCAGAAAGGATAATCCAA+AGG | + | chr5.4:56421552-56421571 | None:intergenic | 30.0% | |
| ! | CCACCTTAAAAAGTCTTTTT+GGG | + | chr5.4:56421138-56421157 | None:intergenic | 30.0% |
| ! | GGTACAGATTTGAAATTGTT+TGG | - | chr5.4:56422326-56422345 | MS.gene26091:intron | 30.0% |
| ! | TAAGGAAAATGAGTTGAAAG+TGG | + | chr5.4:56421674-56421693 | None:intergenic | 30.0% |
| ! | TCGTAAAATGTCTTTTCTGT+CGG | - | chr5.4:56421468-56421487 | MS.gene26091:intron | 30.0% |
| ! | TTTTTCTTGTACTAGTGTAG+CGG | - | chr5.4:56422101-56422120 | MS.gene26091:intron | 30.0% |
| !! | AAAAAGCTTTTTAAGGAGTG+TGG | - | chr5.4:56423407-56423426 | MS.gene26091:CDS | 30.0% |
| !! | ACATAGGATTCCTTTGAAAT+AGG | - | chr5.4:56422765-56422784 | MS.gene26091:intron | 30.0% |
| !! | GAATCAGTATATTTTGGGAA+TGG | - | chr5.4:56423266-56423285 | MS.gene26091:intron | 30.0% |
| !! | TCCAATTTCTAGTCTAGATT+AGG | - | chr5.4:56422665-56422684 | MS.gene26091:intron | 30.0% |
| !! | TTACTCTAAAATAGCAGAGA+TGG | + | chr5.4:56422812-56422831 | None:intergenic | 30.0% |
| !!! | ATTTTGGTTCACATACTACA+TGG | + | chr5.4:56422739-56422758 | None:intergenic | 30.0% |
| !!! | CACTCCTTAAAAAGCTTTTT+TGG | + | chr5.4:56423407-56423426 | None:intergenic | 30.0% |
| !!! | CCAAAAAGACTTTTTAAGGT+GGG | - | chr5.4:56421136-56421155 | MS.gene26091:CDS | 30.0% |
| !!! | TTAGTTCAAGTTTTTTAGCG+TGG | - | chr5.4:56420870-56420889 | MS.gene26091:CDS | 30.0% |
| AAAAGAAGCAAACACAGCAT+AGG | - | chr5.4:56423081-56423100 | MS.gene26091:intron | 35.0% | |
| AAAATTCGCAAGGGAATTCT+TGG | + | chr5.4:56420915-56420934 | None:intergenic | 35.0% | |
| AACAGCTGAGAAACATGAAT+GGG | - | chr5.4:56423216-56423235 | MS.gene26091:intron | 35.0% | |
| AACTCACAGTTCATGAAGTA+AGG | - | chr5.4:56422414-56422433 | MS.gene26091:intron | 35.0% | |
| ACAACAACTATCAGATCAAC+TGG | + | chr5.4:56421106-56421125 | None:intergenic | 35.0% | |
| AGTAAGGACAACATCTTAGA+AGG | - | chr5.4:56422430-56422449 | MS.gene26091:intron | 35.0% | |
| CAAACCAGCAAAGAACAATA+TGG | + | chr5.4:56421623-56421642 | None:intergenic | 35.0% | |
| CTCCTTCACTATTGAAATGT+TGG | + | chr5.4:56423039-56423058 | None:intergenic | 35.0% | |
| CTCTGGATCATGATTTAGTT+TGG | + | chr5.4:56422553-56422572 | None:intergenic | 35.0% | |
| CTTGAGAAAACTCAAGTCAT+TGG | - | chr5.4:56421879-56421898 | MS.gene26091:intron | 35.0% | |
| GAAATAGGTAGAGATACCTT+TGG | - | chr5.4:56422780-56422799 | MS.gene26091:intron | 35.0% | |
| GATGCAATAGATGATTAGCA+TGG | - | chr5.4:56422384-56422403 | MS.gene26091:intron | 35.0% | |
| GGTATCTCTACCTATTTCAA+AGG | + | chr5.4:56422778-56422797 | None:intergenic | 35.0% | |
| GTAAGGACAACATCTTAGAA+GGG | - | chr5.4:56422431-56422450 | MS.gene26091:intron | 35.0% | |
| TAAGGACAACATCTTAGAAG+GGG | - | chr5.4:56422432-56422451 | MS.gene26091:intron | 35.0% | |
| TACACGAATTCTGTGACTAT+GGG | - | chr5.4:56421001-56421020 | MS.gene26091:CDS | 35.0% | |
| TACTTGCAGTCTAATGATGT+AGG | + | chr5.4:56421263-56421282 | None:intergenic | 35.0% | |
| TCTTTGCAAATTTCAGGCTT+TGG | - | chr5.4:56422305-56422324 | MS.gene26091:intron | 35.0% | |
| TGCCAACATTTCAATAGTGA+AGG | - | chr5.4:56423034-56423053 | MS.gene26091:intron | 35.0% | |
| TGGCATTCTTTGCAAATTTC+AGG | - | chr5.4:56422299-56422318 | MS.gene26091:intron | 35.0% | |
| TTAGTATCCACCTTATTAGC+TGG | - | chr5.4:56422062-56422081 | MS.gene26091:intron | 35.0% | |
| ! | AAAATGAGTTGAAAGTGGCA+AGG | + | chr5.4:56421669-56421688 | None:intergenic | 35.0% |
| ! | AAGAATTCCCTTGCGAATTT+TGG | - | chr5.4:56420914-56420933 | MS.gene26091:CDS | 35.0% |
| ! | AATCCTATGTTGTCCCATTT+TGG | + | chr5.4:56422755-56422774 | None:intergenic | 35.0% |
| ! | AGACATTTTACGACTGTGAT+TGG | + | chr5.4:56421461-56421480 | None:intergenic | 35.0% |
| ! | AGTGCATAGACAACACTTTT+AGG | + | chr5.4:56421085-56421104 | None:intergenic | 35.0% |
| ! | ATGAATGGGTTCAGTTCAAT+TGG | - | chr5.4:56423230-56423249 | MS.gene26091:intron | 35.0% |
| ! | CCCACCTTAAAAAGTCTTTT+TGG | + | chr5.4:56421139-56421158 | None:intergenic | 35.0% |
| ! | GAGCCCAAAAAGACTTTTTA+AGG | - | chr5.4:56421132-56421151 | MS.gene26091:CDS | 35.0% |
| ! | GGCATTCTGTGCAAATTTTT+GGG | - | chr5.4:56422183-56422202 | MS.gene26091:intron | 35.0% |
| ! | GTGCCCAAAAAAGCTTTTTA+AGG | - | chr5.4:56423400-56423419 | MS.gene26091:CDS | 35.0% |
| ! | TGAATGGGTTCAGTTCAATT+GGG | - | chr5.4:56423231-56423250 | MS.gene26091:intron | 35.0% |
| ! | TGGCATTCTGTGCAAATTTT+TGG | - | chr5.4:56422182-56422201 | MS.gene26091:intron | 35.0% |
| !! | CCCAAAAAGACTTTTTAAGG+TGG | - | chr5.4:56421135-56421154 | MS.gene26091:CDS | 35.0% |
| !!! | AAAAGACTTTTTAAGGTGGG+CGG | - | chr5.4:56421139-56421158 | MS.gene26091:CDS | 35.0% |
| AAAACGTGAGGTCTAAATCC+GGG | + | chr5.4:56422496-56422515 | None:intergenic | 40.0% | |
| AAACTCAAGTCATTGGCGAT+TGG | - | chr5.4:56421886-56421905 | MS.gene26091:intron | 40.0% | |
| AAGCATACCAGCTAATAAGG+TGG | + | chr5.4:56422072-56422091 | None:intergenic | 40.0% | |
| AATAGTGAAGGAGCTAGTGA+AGG | - | chr5.4:56423046-56423065 | MS.gene26091:intron | 40.0% | |
| ACCATGACATTAGAATGACC+CGG | - | chr5.4:56422475-56422494 | MS.gene26091:intron | 40.0% | |
| ACTACATGGTATATCTTGCC+AGG | + | chr5.4:56422725-56422744 | None:intergenic | 40.0% | |
| AGATTAGGTCACATACTGCA+GGG | - | chr5.4:56422680-56422699 | MS.gene26091:intron | 40.0% | |
| AGGCAAGTAGTAACGACTAT+AGG | + | chr5.4:56421424-56421443 | None:intergenic | 40.0% | |
| ATAAGAGGAGAAGAAGGGAA+TGG | - | chr5.4:56421779-56421798 | MS.gene26091:intron | 40.0% | |
| ATATCTGAAAGCAATGGCTC+TGG | + | chr5.4:56422570-56422589 | None:intergenic | 40.0% | |
| ATCAAAGTCTTTCCAGTTCC+AGG | - | chr5.4:56423135-56423154 | MS.gene26091:CDS | 40.0% | |
| CAAGTAGTAACGACTATAGG+CGG | + | chr5.4:56421421-56421440 | None:intergenic | 40.0% | |
| CATCTCTTATCGATGGAGAA+TGG | - | chr5.4:56423324-56423343 | MS.gene26091:intron | 40.0% | |
| CATTCTCCATCGATAAGAGA+TGG | + | chr5.4:56423326-56423345 | None:intergenic | 40.0% | |
| CTGTCCAAATTAGTCACTCA+TGG | - | chr5.4:56421353-56421372 | MS.gene26091:intron | 40.0% | |
| CTTATTAGCTGGTATGCTTC+TGG | - | chr5.4:56422073-56422092 | MS.gene26091:intron | 40.0% | |
| GAAAACGTGAGGTCTAAATC+CGG | + | chr5.4:56422497-56422516 | None:intergenic | 40.0% | |
| GAACAGCTGAGAAACATGAA+TGG | - | chr5.4:56423215-56423234 | MS.gene26091:CDS | 40.0% | |
| GAACCAAAATGGGACAACAT+AGG | - | chr5.4:56422749-56422768 | MS.gene26091:intron | 40.0% | |
| GGGCTATGAAACATCAAGTT+AGG | - | chr5.4:56422452-56422471 | MS.gene26091:intron | 40.0% | |
| GTACACGAATTCTGTGACTA+TGG | - | chr5.4:56421000-56421019 | MS.gene26091:CDS | 40.0% | |
| GTCTGGTATGCGATAATTCA+AGG | - | chr5.4:56421174-56421193 | MS.gene26091:CDS | 40.0% | |
| GTTTCCGTTATTCGTGCAAA+TGG | - | chr5.4:56421593-56421612 | MS.gene26091:intron | 40.0% | |
| TAGATTAGGTCACATACTGC+AGG | - | chr5.4:56422679-56422698 | MS.gene26091:intron | 40.0% | |
| TCGGGGATGTGTATAATTCA+AGG | - | chr5.4:56423443-56423462 | MS.gene26091:CDS | 40.0% | |
| TCTACATCTGAGGGATACAA+AGG | - | chr5.4:56422515-56422534 | MS.gene26091:intron | 40.0% | |
| TGATCGTGGTTTACAGACAT+CGG | - | chr5.4:56422914-56422933 | MS.gene26091:intron | 40.0% | |
| TGCAATTGAGTGATTCTGCA+GGG | - | chr5.4:56422607-56422626 | MS.gene26091:intron | 40.0% | |
| TTAGCACCATCTCTTATCGA+TGG | - | chr5.4:56423317-56423336 | MS.gene26091:intron | 40.0% | |
| TTCGCCTATTATCATGATCG+TGG | - | chr5.4:56422900-56422919 | MS.gene26091:intron | 40.0% | |
| ! | CAGAAGCATACCAGCTAATA+AGG | + | chr5.4:56422075-56422094 | None:intergenic | 40.0% |
| ! | CTCACGTTTTCTACATCTGA+GGG | - | chr5.4:56422506-56422525 | MS.gene26091:intron | 40.0% |
| !! | GGTGCATAGACATCACTTTT+AGG | + | chr5.4:56423353-56423372 | None:intergenic | 40.0% |
| !! | GTGTAGCGGATTTGAAAAGT+TGG | - | chr5.4:56422115-56422134 | MS.gene26091:intron | 40.0% |
| !!! | AGTTTTTTAGCGTGGTTCAC+TGG | - | chr5.4:56420878-56420897 | MS.gene26091:CDS | 40.0% |
| !!! | TGTCTTTTCTGTCGGTTTCT+AGG | - | chr5.4:56421476-56421495 | MS.gene26091:intron | 40.0% |
| AAGAGGAAGGAAATAAGCCC+TGG | + | chr5.4:56420813-56420832 | None:intergenic | 45.0% | |
| ATGGGTTCAGTTCAATTGGG+AGG | - | chr5.4:56423234-56423253 | MS.gene26091:intron | 45.0% | |
| CAGGTCTGATCTTCACTACA+GGG | - | chr5.4:56423154-56423173 | MS.gene26091:CDS | 45.0% | |
| CCTCAGATGTAGAAAACGTG+AGG | + | chr5.4:56422508-56422527 | None:intergenic | 45.0% | |
| GGTAGAGATACCTTTGGTAG+AGG | - | chr5.4:56422786-56422805 | MS.gene26091:intron | 45.0% | |
| GTGATCCTGCTCTTGAAAAG+AGG | + | chr5.4:56420830-56420849 | None:intergenic | 45.0% | |
| GTGCAATTGAGTGATTCTGC+AGG | - | chr5.4:56422606-56422625 | MS.gene26091:intron | 45.0% | |
| TCCGGGTCATTCTAATGTCA+TGG | + | chr5.4:56422479-56422498 | None:intergenic | 45.0% | |
| TCCTGCTCTTGAAAAGAGGA+AGG | + | chr5.4:56420826-56420845 | None:intergenic | 45.0% | |
| TGAGTGATTCTGCAGGGTTT+GGG | - | chr5.4:56422613-56422632 | MS.gene26091:intron | 45.0% | |
| TGGGTTCAGTTCAATTGGGA+GGG | - | chr5.4:56423235-56423254 | MS.gene26091:intron | 45.0% | |
| TTGAGTGATTCTGCAGGGTT+TGG | - | chr5.4:56422612-56422631 | MS.gene26091:intron | 45.0% | |
| ! | CCTCACGTTTTCTACATCTG+AGG | - | chr5.4:56422505-56422524 | MS.gene26091:intron | 45.0% |
| !! | GATGAGAAGCATCACTCCTT+TGG | - | chr5.4:56421533-56421552 | MS.gene26091:intron | 45.0% |
| !! | TCCTTCCTCTTTTCAAGAGC+AGG | - | chr5.4:56420822-56420841 | MS.gene26091:CDS | 45.0% |
| !! | TTTGCTGGTTTGCATTGCTG+TGG | - | chr5.4:56421631-56421650 | MS.gene26091:intron | 45.0% |
| !!! | TTAAAATTTGAAATAATTAA+TGG | - | chr5.4:56422162-56422181 | MS.gene26091:intron | 5.0% |
| AAGAGCAGGATCACTTCCCT+AGG | - | chr5.4:56420836-56420855 | MS.gene26091:CDS | 50.0% | |
| AGAGGAGAAGAAGGGAATGG+AGG | - | chr5.4:56421782-56421801 | MS.gene26091:intron | 50.0% | |
| AGCCATTCCACATCGATAGG+AGG | + | chr5.4:56421061-56421080 | None:intergenic | 50.0% | |
| ATACTGCAGGGCACGAACTA+TGG | - | chr5.4:56422692-56422711 | MS.gene26091:intron | 50.0% | |
| CACCTCCTATCGATGTGGAA+TGG | - | chr5.4:56421056-56421075 | MS.gene26091:CDS | 50.0% | |
| CATTCCACATCGATAGGAGG+TGG | + | chr5.4:56421058-56421077 | None:intergenic | 50.0% | |
| CCAGGTCTGATCTTCACTAC+AGG | - | chr5.4:56423153-56423172 | MS.gene26091:CDS | 50.0% | |
| CCTGTAGTGAAGATCAGACC+TGG | + | chr5.4:56423156-56423175 | None:intergenic | 50.0% | |
| CGAATTCTGTGACTATGGGC+AGG | - | chr5.4:56421005-56421024 | MS.gene26091:CDS | 50.0% | |
| CGGTTCGCCAAAATTCGCAA+GGG | + | chr5.4:56420924-56420943 | None:intergenic | 50.0% | |
| GAGGAGAAGAAGGGAATGGA+GGG | - | chr5.4:56421783-56421802 | MS.gene26091:intron | 50.0% | |
| GCCATTAATTGGTGGGACCA+GGG | - | chr5.4:56420793-56420812 | MS.gene26091:CDS | 50.0% | |
| GGAAGCCATTCCACATCGAT+AGG | + | chr5.4:56421064-56421083 | None:intergenic | 50.0% | |
| GTAGTAACGACTATAGGCGG+TGG | + | chr5.4:56421418-56421437 | None:intergenic | 50.0% | |
| GTGAAGATCAGACCTGGAAC+TGG | + | chr5.4:56423150-56423169 | None:intergenic | 50.0% | |
| TGCCATTAATTGGTGGGACC+AGG | - | chr5.4:56420792-56420811 | MS.gene26091:CDS | 50.0% | |
| TGGTATATCTTGCCAGGTGC+AGG | + | chr5.4:56422719-56422738 | None:intergenic | 50.0% | |
| TTCGCGGTACTTTCACGAAC+CGG | + | chr5.4:56420944-56420963 | None:intergenic | 50.0% | |
| ! | CGGTGGAAGTGCAAGTGAAA+AGG | + | chr5.4:56421401-56421420 | None:intergenic | 50.0% |
| !! | CCTTGCGAATTTTGGCGAAC+CGG | - | chr5.4:56420922-56420941 | MS.gene26091:CDS | 50.0% |
| !! | GTGTGGAAAGCGCTTACAGT+CGG | - | chr5.4:56423424-56423443 | MS.gene26091:CDS | 50.0% |
| !! | TGTGGAAAGCGCTTACAGTC+GGG | - | chr5.4:56423425-56423444 | MS.gene26091:CDS | 50.0% |
| !! | TTCGTGAAAGTACCGCGAAC+CGG | - | chr5.4:56420945-56420964 | MS.gene26091:CDS | 50.0% |
| ACACAGCATAGGCACGAGCT+AGG | - | chr5.4:56423092-56423111 | MS.gene26091:CDS | 55.0% | |
| ACGAACTATGGACCTGCACC+TGG | - | chr5.4:56422704-56422723 | MS.gene26091:intron | 55.0% | |
| AGCACCACCTCCTATCGATG+TGG | - | chr5.4:56421051-56421070 | MS.gene26091:CDS | 55.0% | |
| CACAGCATAGGCACGAGCTA+GGG | - | chr5.4:56423093-56423112 | MS.gene26091:CDS | 55.0% | |
| CTAGCCTGAGAACCACGAAC+CGG | + | chr5.4:56420981-56421000 | None:intergenic | 55.0% | |
| GCAGAGATGGCCTCTACCAA+AGG | + | chr5.4:56422799-56422818 | None:intergenic | 55.0% | |
| GCCCTGGTCCCACCAATTAA+TGG | + | chr5.4:56420797-56420816 | None:intergenic | 55.0% | |
| GGAGCTAGTGAAGGAGCTGA+AGG | - | chr5.4:56423055-56423074 | MS.gene26091:intron | 55.0% | |
| GGGAATGGCAGAACGACACT+AGG | - | chr5.4:56423281-56423300 | MS.gene26091:intron | 55.0% | |
| GTGACTATGGGCAGGACACT+AGG | - | chr5.4:56421013-56421032 | MS.gene26091:CDS | 55.0% | |
| ! | CCGGTTCGCCAAAATTCGCA+AGG | + | chr5.4:56420925-56420944 | None:intergenic | 55.0% |
| ! | CTGCAGGGTTTGGGACAAAC+TGG | - | chr5.4:56422622-56422641 | MS.gene26091:intron | 55.0% |
| !! | GTGGAAAGCGCTTACAGTCG+GGG | - | chr5.4:56423426-56423445 | MS.gene26091:CDS | 55.0% |
| GCATAGGCACGAGCTAGGGA+AGG | - | chr5.4:56423097-56423116 | MS.gene26091:CDS | 60.0% | |
| ! | GGCGGAAAGCGCATACAGTC+TGG | - | chr5.4:56421157-56421176 | MS.gene26091:CDS | 60.0% |
| !! | ACGAACCGGTTCGCACGAAC+CGG | + | chr5.4:56420967-56420986 | None:intergenic | 60.0% |
| !! | CGAACCGGTTCGTGGTTCTC+AGG | - | chr5.4:56420974-56420993 | MS.gene26091:CDS | 60.0% |
| !! | GCGAACCGGTTCGTGCGAAC+CGG | - | chr5.4:56420959-56420978 | MS.gene26091:CDS | 65.0% |
| !! | GGTTCGCACGAACCGGTTCG+CGG | + | chr5.4:56420960-56420979 | None:intergenic | 65.0% |
| !! | GGTTCGTGCGAACCGGTTCG+TGG | - | chr5.4:56420966-56420985 | MS.gene26091:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 56420791 | 56423478 | 56420791 | ID=MS.gene26091 |
| chr5.4 | mRNA | 56420791 | 56423478 | 56420791 | ID=MS.gene26091.t1;Parent=MS.gene26091 |
| chr5.4 | exon | 56423370 | 56423478 | 56423370 | ID=MS.gene26091.t1.exon1;Parent=MS.gene26091.t1 |
| chr5.4 | CDS | 56423370 | 56423478 | 56423370 | ID=cds.MS.gene26091.t1;Parent=MS.gene26091.t1 |
| chr5.4 | exon | 56423091 | 56423234 | 56423091 | ID=MS.gene26091.t1.exon2;Parent=MS.gene26091.t1 |
| chr5.4 | CDS | 56423091 | 56423234 | 56423091 | ID=cds.MS.gene26091.t1;Parent=MS.gene26091.t1 |
| chr5.4 | exon | 56420791 | 56421218 | 56420791 | ID=MS.gene26091.t1.exon3;Parent=MS.gene26091.t1 |
| chr5.4 | CDS | 56420791 | 56421218 | 56420791 | ID=cds.MS.gene26091.t1;Parent=MS.gene26091.t1 |
| Gene Sequence |
| Protein sequence |
