Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26138.t1 | XP_003616242.1 | 95.4 | 388 | 16 | 1 | 1 | 386 | 1 | 388 | 7.80E-215 | 756.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26138.t1 | Q94II3 | 32.5 | 114 | 72 | 4 | 218 | 329 | 181 | 291 | 3.2e-07 | 57.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26138.t1 | G7KG13 | 95.4 | 388 | 16 | 1 | 1 | 386 | 1 | 388 | 5.6e-215 | 756.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054742 | MS.gene26138 | 0.810551 | 1.09E-50 | -1.69E-46 |
| MS.gene056330 | MS.gene26138 | 0.804533 | 2.06E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene26138 | 0.80034 | 1.51E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26138.t1 | MTR_5g077710 | 97.423 | 388 | 8 | 1 | 1 | 386 | 1 | 388 | 0.0 | 774 |
| MS.gene26138.t1 | MTR_2g028610 | 50.964 | 363 | 176 | 2 | 20 | 382 | 98 | 458 | 7.94e-138 | 401 |
| MS.gene26138.t1 | MTR_2g028590 | 48.919 | 370 | 182 | 2 | 13 | 382 | 101 | 463 | 2.08e-133 | 390 |
| MS.gene26138.t1 | MTR_1g024005 | 42.508 | 327 | 174 | 7 | 62 | 383 | 108 | 425 | 3.59e-89 | 275 |
| MS.gene26138.t1 | MTR_8g028460 | 40.120 | 334 | 183 | 5 | 61 | 381 | 156 | 485 | 6.40e-87 | 272 |
| MS.gene26138.t1 | MTR_0010s0400 | 41.003 | 339 | 191 | 5 | 43 | 381 | 127 | 456 | 4.20e-85 | 266 |
| MS.gene26138.t1 | MTR_3g113270 | 40.798 | 326 | 181 | 8 | 62 | 383 | 103 | 420 | 5.30e-85 | 265 |
| MS.gene26138.t1 | MTR_4g094572 | 43.478 | 299 | 147 | 7 | 92 | 382 | 91 | 375 | 2.09e-71 | 228 |
| MS.gene26138.t1 | MTR_3g071050 | 40.609 | 197 | 109 | 6 | 62 | 256 | 75 | 265 | 1.45e-40 | 145 |
| MS.gene26138.t1 | MTR_3g070620 | 45.455 | 132 | 67 | 4 | 192 | 320 | 59 | 188 | 2.03e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26138.t1 | AT3G05390 | 42.598 | 331 | 181 | 5 | 51 | 381 | 138 | 459 | 5.13e-92 | 284 |
| MS.gene26138.t1 | AT4G01240 | 41.477 | 352 | 186 | 8 | 43 | 381 | 310 | 654 | 4.45e-89 | 282 |
| MS.gene26138.t1 | AT5G40830 | 42.683 | 328 | 169 | 9 | 61 | 383 | 100 | 413 | 2.23e-84 | 263 |
| MS.gene26138.t1 | AT5G40830 | 42.683 | 328 | 169 | 9 | 61 | 383 | 100 | 413 | 2.23e-84 | 263 |
| MS.gene26138.t1 | AT3G27230 | 42.236 | 322 | 173 | 6 | 62 | 383 | 101 | 409 | 6.19e-82 | 256 |
| MS.gene26138.t1 | AT1G29790 | 41.096 | 292 | 150 | 7 | 92 | 381 | 104 | 375 | 2.88e-73 | 233 |
| MS.gene26138.t1 | AT1G29790 | 41.096 | 292 | 150 | 7 | 92 | 381 | 104 | 375 | 2.88e-73 | 233 |
| MS.gene26138.t1 | AT5G40830 | 37.615 | 327 | 149 | 5 | 60 | 383 | 99 | 373 | 8.65e-73 | 232 |
Find 124 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAATTAGAGAATGTTTA+TGG | 0.238851 | 5.4:-57115646 | MS.gene26138:CDS |
| GGGATGGGCGATGGGAAATT+AGG | 0.270266 | 5.4:+57116222 | None:intergenic |
| TTATGAGGTTTGTGAATAAA+AGG | 0.274720 | 5.4:+57116592 | None:intergenic |
| AAGAAAGTTAAGTGGGTTAC+TGG | 0.275293 | 5.4:-57115598 | MS.gene26138:CDS |
| TTTGTTGTTTGATGTTTATA+GGG | 0.284105 | 5.4:-57115719 | MS.gene26138:CDS |
| TTAGACCTGGTGGGTTGTTT+TGG | 0.290537 | 5.4:-57115693 | MS.gene26138:CDS |
| TGATAAGGGACCTCAATTTC+AGG | 0.291988 | 5.4:-57115566 | MS.gene26138:CDS |
| AATGTACCTTTCTGCTTTGT+TGG | 0.311264 | 5.4:-57115542 | MS.gene26138:CDS |
| AAATCTAGACCGTTTGATCT+AGG | 0.311564 | 5.4:+57116030 | None:intergenic |
| GAAGCTATGAAGCTATTAAA+AGG | 0.313502 | 5.4:+57115865 | None:intergenic |
| GTGGTGGTGGTTGTAAAATT+TGG | 0.315722 | 5.4:+57116528 | None:intergenic |
| TCTCAAAGACTCCTACTAAA+AGG | 0.337748 | 5.4:-57116288 | MS.gene26138:CDS |
| TCCCCTTCCCTTCCAGTCTC+TGG | 0.349654 | 5.4:-57116203 | MS.gene26138:CDS |
| TGAAGAGTAAATTGGCGGTT+AGG | 0.360306 | 5.4:+57116622 | None:intergenic |
| CGGCAACGGCGGCGAGGGAG+AGG | 0.371397 | 5.4:+57116258 | None:intergenic |
| TGCGAAATACTCATGTATAA+AGG | 0.374905 | 5.4:+57115829 | None:intergenic |
| GAGGTGGAGGCAAAGAATTC+CGG | 0.397834 | 5.4:+57116462 | None:intergenic |
| GAGGGAAATGAAGAGTAAAT+TGG | 0.398464 | 5.4:+57116614 | None:intergenic |
| GAAGGGAAGGGGATGGGCGA+TGG | 0.401095 | 5.4:+57116213 | None:intergenic |
| GTCTTCAACGGCGGTGGCTG+TGG | 0.403735 | 5.4:+57116509 | None:intergenic |
| CGGTGTCGGAGTTGAAGTTT+CGG | 0.405953 | 5.4:+57116412 | None:intergenic |
| GAAGAGTAAATTGGCGGTTA+GGG | 0.415281 | 5.4:+57116623 | None:intergenic |
| TAAACCGATTCGAACCGAAC+CGG | 0.422920 | 5.4:+57115975 | None:intergenic |
| GTGCATGCGCTGCCGGCGGG+AGG | 0.428866 | 5.4:+57116384 | None:intergenic |
| CCCTCGCCGCCGTTGCCGTC+CGG | 0.429922 | 5.4:-57116253 | MS.gene26138:CDS |
| AACGGCGGTGGCTGTGGTGG+TGG | 0.430884 | 5.4:+57116515 | None:intergenic |
| TGCATGCGCTGCCGGCGGGA+GGG | 0.436930 | 5.4:+57116385 | None:intergenic |
| ATTCACCATGAATCCTTGAA+TGG | 0.436986 | 5.4:+57115514 | None:intergenic |
| AACCCTACACTTTCAATCAT+AGG | 0.442677 | 5.4:+57115622 | None:intergenic |
| AGCCTCTCTGTGTGCGGGAA+CGG | 0.450861 | 5.4:+57116112 | None:intergenic |
| AGGGTGCATGCGCTGCCGGC+GGG | 0.455390 | 5.4:+57116381 | None:intergenic |
| GATCCCCAACACAAAAGAAA+TGG | 0.457855 | 5.4:+57115665 | None:intergenic |
| ACAACGTCGTTAAACTTAAA+CGG | 0.460143 | 5.4:-57115889 | MS.gene26138:CDS |
| AGAAGCCATTCAAGGATTCA+TGG | 0.463717 | 5.4:-57115519 | MS.gene26138:CDS |
| AAAGAGGGTGCATGCGCTGC+CGG | 0.465186 | 5.4:+57116377 | None:intergenic |
| GGCGGGAGGGTGGACGGTGT+CGG | 0.467004 | 5.4:+57116398 | None:intergenic |
| AATCTAGACCGTTTGATCTA+GGG | 0.468716 | 5.4:+57116031 | None:intergenic |
| AGCGCTGTCTTCAACGGCGG+TGG | 0.470998 | 5.4:+57116503 | None:intergenic |
| GACCTATGATTGAAAGTGTA+GGG | 0.472579 | 5.4:-57115624 | MS.gene26138:CDS |
| CCGGACGGCAACGGCGGCGA+GGG | 0.472795 | 5.4:+57116253 | None:intergenic |
| AGACTGGAAGGGAAGGGGAT+GGG | 0.474447 | 5.4:+57116207 | None:intergenic |
| GTTCGAATCGGTTTAGACAT+AGG | 0.474512 | 5.4:-57115967 | MS.gene26138:CDS |
| TACTGGGAAGAAGCTTGATA+AGG | 0.475551 | 5.4:-57115581 | MS.gene26138:CDS |
| AGGTACATTTCCTGAAATTG+AGG | 0.476525 | 5.4:+57115556 | None:intergenic |
| GCCGGACGGCAACGGCGGCG+AGG | 0.478129 | 5.4:+57116252 | None:intergenic |
| CCACACGACGGAGGAATTTG+AGG | 0.481995 | 5.4:+57116173 | None:intergenic |
| TTTGTTGGAGAAGCCATTCA+AGG | 0.482535 | 5.4:-57115527 | MS.gene26138:CDS |
| TAGGGTTTAAGAAAGTTAAG+TGG | 0.485340 | 5.4:-57115606 | MS.gene26138:CDS |
| AAACCCGGTTCGGTTCGAAT+CGG | 0.488469 | 5.4:-57115979 | MS.gene26138:CDS |
| TTGATCTAGGGTTTGTCCAA+CGG | 0.488488 | 5.4:+57116043 | None:intergenic |
| TGAGAGAGAATCTCGTCGTC+TGG | 0.489539 | 5.4:+57116306 | None:intergenic |
| ACTGGGAAGAAGCTTGATAA+GGG | 0.494358 | 5.4:-57115580 | MS.gene26138:CDS |
| AAACCGATTCGAACCGAACC+GGG | 0.494960 | 5.4:+57115976 | None:intergenic |
| TTGGTGTACAAGTGGAGGAA+TGG | 0.497681 | 5.4:+57116547 | None:intergenic |
| GTGGTGCTGCCGGACGGCAA+CGG | 0.499920 | 5.4:+57116244 | None:intergenic |
| TGCGGATATCGTCGGGAAAG+AGG | 0.501843 | 5.4:+57116361 | None:intergenic |
| AGAAACACGTAAACCCGGTT+CGG | 0.502080 | 5.4:-57115989 | MS.gene26138:CDS |
| GCTGCCGGCGGGAGGGTGGA+CGG | 0.510419 | 5.4:+57116392 | None:intergenic |
| GAGACTGGAAGGGAAGGGGA+TGG | 0.511438 | 5.4:+57116206 | None:intergenic |
| ATGAAGCTGCGGATATCGTC+GGG | 0.512073 | 5.4:+57116354 | None:intergenic |
| ATCGAAGCCTCTCTGTGTGC+GGG | 0.515555 | 5.4:+57116107 | None:intergenic |
| TTCAACGGCGGTGGCTGTGG+TGG | 0.515739 | 5.4:+57116512 | None:intergenic |
| AAGGGAAGGGGATGGGCGAT+GGG | 0.517670 | 5.4:+57116214 | None:intergenic |
| TATAGGGTTCTTAGACCTGG+TGG | 0.518659 | 5.4:-57115703 | MS.gene26138:CDS |
| GTTTATAGGGTTCTTAGACC+TGG | 0.523866 | 5.4:-57115706 | MS.gene26138:CDS |
| ATAGGGTTCTTAGACCTGGT+GGG | 0.524499 | 5.4:-57115702 | MS.gene26138:CDS |
| GACCAGAGACTGGAAGGGAA+GGG | 0.527483 | 5.4:+57116201 | None:intergenic |
| AGGAAAGAAAGAGTGTTATG+AGG | 0.530138 | 5.4:+57116577 | None:intergenic |
| AGAAAGTTAAGTGGGTTACT+GGG | 0.530570 | 5.4:-57115597 | MS.gene26138:CDS |
| GAGGGTGCATGCGCTGCCGG+CGG | 0.531697 | 5.4:+57116380 | None:intergenic |
| ACAAGTGGAGGAATGGTAAG+TGG | 0.533615 | 5.4:+57116554 | None:intergenic |
| AGGGTTTAAGAAAGTTAAGT+GGG | 0.534205 | 5.4:-57115605 | MS.gene26138:CDS |
| GCCAGCGCTGTCTTCAACGG+CGG | 0.535578 | 5.4:+57116500 | None:intergenic |
| GGGAAATTAGGTGGTGCTGC+CGG | 0.535730 | 5.4:+57116234 | None:intergenic |
| ACCAGAGACTGGAAGGGAAG+GGG | 0.537057 | 5.4:+57116202 | None:intergenic |
| GGTGTAGACCAGAGACTGGA+AGG | 0.545576 | 5.4:+57116195 | None:intergenic |
| TGGTGGAGTAGCAACTTTCG+CGG | 0.547029 | 5.4:-57115944 | MS.gene26138:CDS |
| TGTAAAATTTGGTGTACAAG+TGG | 0.547597 | 5.4:+57116539 | None:intergenic |
| TGGACAAACCCTAGATCAAA+CGG | 0.551753 | 5.4:-57116039 | MS.gene26138:CDS |
| GAGGTTTGTGAATAAAAGGA+GGG | 0.554209 | 5.4:+57116596 | None:intergenic |
| CATGAAGCTGCGGATATCGT+CGG | 0.555173 | 5.4:+57116353 | None:intergenic |
| CCAATTACTCAAAACATGCA+TGG | 0.556759 | 5.4:+57115765 | None:intergenic |
| GCGGATATCGTCGGGAAAGA+GGG | 0.558600 | 5.4:+57116362 | None:intergenic |
| GTCGCCAGCGCTGTCTTCAA+CGG | 0.559058 | 5.4:+57116497 | None:intergenic |
| TGAGGTTTGTGAATAAAAGG+AGG | 0.564210 | 5.4:+57116595 | None:intergenic |
| ATCGGTTTAGACATAGGTGG+TGG | 0.566020 | 5.4:-57115961 | MS.gene26138:CDS |
| CATCGAAGCCTCTCTGTGTG+CGG | 0.567625 | 5.4:+57116106 | None:intergenic |
| AAAATTTGGTGTACAAGTGG+AGG | 0.570105 | 5.4:+57116542 | None:intergenic |
| GGACCTATGATTGAAAGTGT+AGG | 0.571785 | 5.4:-57115625 | MS.gene26138:CDS |
| ATGCGCTGCCGGCGGGAGGG+TGG | 0.573167 | 5.4:+57116388 | None:intergenic |
| TTGTCCAACGGTGCTTCTCG+CGG | 0.575905 | 5.4:+57116055 | None:intergenic |
| ACGGCCGCGAGAAGCACCGT+TGG | 0.579438 | 5.4:-57116059 | MS.gene26138:CDS |
| TGAGGGTGTAGACCAGAGAC+TGG | 0.583150 | 5.4:+57116191 | None:intergenic |
| AAGTTTCGGTTGAAACCTAG+TGG | 0.586759 | 5.4:+57116426 | None:intergenic |
| AATTAGGTGGTGCTGCCGGA+CGG | 0.588099 | 5.4:+57116238 | None:intergenic |
| AGACCAGAGACTGGAAGGGA+AGG | 0.594271 | 5.4:+57116200 | None:intergenic |
| ACCGCCGTTGAAGACAGCGC+TGG | 0.594417 | 5.4:-57116501 | MS.gene26138:CDS |
| ATGGGCGATGGGAAATTAGG+TGG | 0.595658 | 5.4:+57116225 | None:intergenic |
| ACATGATCCGTTCACGTCGT+AGG | 0.599038 | 5.4:+57116329 | None:intergenic |
| ATAGCTTCATAGCTTCAAGA+GGG | 0.600391 | 5.4:-57115858 | MS.gene26138:CDS |
| CCTCAAATTCCTCCGTCGTG+TGG | 0.601922 | 5.4:-57116173 | MS.gene26138:CDS |
| AATAGCTTCATAGCTTCAAG+AGG | 0.604135 | 5.4:-57115859 | MS.gene26138:CDS |
| GACACCGTCCACCCTCCCGC+CGG | 0.604663 | 5.4:-57116396 | MS.gene26138:CDS |
| GTGGAGGCAAAGAATTCCGG+TGG | 0.608664 | 5.4:+57116465 | None:intergenic |
| TTCATGTCCTACGACGTGAA+CGG | 0.613712 | 5.4:-57116336 | MS.gene26138:CDS |
| TATACATGAGTATTTCGCAA+CGG | 0.616135 | 5.4:-57115825 | MS.gene26138:CDS |
| GTGCTGCCGGACGGCAACGG+CGG | 0.616600 | 5.4:+57116247 | None:intergenic |
| GCTTCTCCAACAAAGCAGAA+AGG | 0.617751 | 5.4:+57115536 | None:intergenic |
| GTGTAGACCAGAGACTGGAA+GGG | 0.619328 | 5.4:+57116196 | None:intergenic |
| GGAAATGAAGAGTAAATTGG+CGG | 0.625883 | 5.4:+57116617 | None:intergenic |
| CACACGACGGAGGAATTTGA+GGG | 0.627361 | 5.4:+57116174 | None:intergenic |
| TCCAACCAAAACAACCCACC+AGG | 0.633677 | 5.4:+57115688 | None:intergenic |
| AGTTTCGGTTGAAACCTAGT+GGG | 0.640219 | 5.4:+57116427 | None:intergenic |
| AGTGGAGGAATGGTAAGTGG+AGG | 0.642457 | 5.4:+57116557 | None:intergenic |
| CGAATCGGTTTAGACATAGG+TGG | 0.657680 | 5.4:-57115964 | MS.gene26138:CDS |
| TGGCGACAGTAACCTCCCAC+CGG | 0.659388 | 5.4:-57116481 | MS.gene26138:CDS |
| TAGCTTCATAGCTTCAAGAG+GGG | 0.664954 | 5.4:-57115857 | MS.gene26138:CDS |
| ACGGTCAATGAGACACGTGT+AGG | 0.665828 | 5.4:+57116131 | None:intergenic |
| GACCGTTCCCGCACACAGAG+AGG | 0.674609 | 5.4:-57116114 | MS.gene26138:CDS |
| AGGCAAAGAATTCCGGTGGG+AGG | 0.675859 | 5.4:+57116469 | None:intergenic |
| CGTCGTAGGACATGAAGCTG+CGG | 0.691105 | 5.4:+57116343 | None:intergenic |
| TGGAGGCAAAGAATTCCGGT+GGG | 0.719672 | 5.4:+57116466 | None:intergenic |
| GTAAGCAGTCCACACGACGG+AGG | 0.721896 | 5.4:+57116164 | None:intergenic |
| TGTGTAAGCAGTCCACACGA+CGG | 0.759753 | 5.4:+57116161 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTGTTTGATGTTTATA+GGG | - | chr5.4:57116451-57116470 | MS.gene26138:CDS | 20.0% |
| !!! | TTTTGTTGTTTGATGTTTAT+AGG | - | chr5.4:57116450-57116469 | MS.gene26138:CDS | 20.0% |
| ! | AAAAAATGAAGCAATGTTTC+AGG | + | chr5.4:57116434-57116453 | None:intergenic | 25.0% |
| ! | GATCAATTAGAGAATGTTTA+TGG | - | chr5.4:57116524-57116543 | MS.gene26138:CDS | 25.0% |
| ! | TTATGAGGTTTGTGAATAAA+AGG | + | chr5.4:57115581-57115600 | None:intergenic | 25.0% |
| !! | TCCAAAGTGTTATCAAAAAA+CGG | + | chr5.4:57116374-57116393 | None:intergenic | 25.0% |
| ACAACGTCGTTAAACTTAAA+CGG | - | chr5.4:57116281-57116300 | MS.gene26138:CDS | 30.0% | |
| AGGGTTTAAGAAAGTTAAGT+GGG | - | chr5.4:57116565-57116584 | MS.gene26138:CDS | 30.0% | |
| GAAGCTATGAAGCTATTAAA+AGG | + | chr5.4:57116308-57116327 | None:intergenic | 30.0% | |
| TAGGGTTTAAGAAAGTTAAG+TGG | - | chr5.4:57116564-57116583 | MS.gene26138:CDS | 30.0% | |
| TATACATGAGTATTTCGCAA+CGG | - | chr5.4:57116345-57116364 | MS.gene26138:CDS | 30.0% | |
| TGCGAAATACTCATGTATAA+AGG | + | chr5.4:57116344-57116363 | None:intergenic | 30.0% | |
| !! | TGTAAAATTTGGTGTACAAG+TGG | + | chr5.4:57115634-57115653 | None:intergenic | 30.0% |
| !!! | AAAGACTGTTTTGATCTCAA+CGG | - | chr5.4:57116092-57116111 | MS.gene26138:CDS | 30.0% |
| !!! | TCCGTTTTTTGATAACACTT+TGG | - | chr5.4:57116370-57116389 | MS.gene26138:CDS | 30.0% |
| AAATCTAGACCGTTTGATCT+AGG | + | chr5.4:57116143-57116162 | None:intergenic | 35.0% | |
| AACCCTACACTTTCAATCAT+AGG | + | chr5.4:57116551-57116570 | None:intergenic | 35.0% | |
| AATAGCTTCATAGCTTCAAG+AGG | - | chr5.4:57116311-57116330 | MS.gene26138:CDS | 35.0% | |
| AATCTAGACCGTTTGATCTA+GGG | + | chr5.4:57116142-57116161 | None:intergenic | 35.0% | |
| AATGTACCTTTCTGCTTTGT+TGG | - | chr5.4:57116628-57116647 | MS.gene26138:CDS | 35.0% | |
| AGGTACATTTCCTGAAATTG+AGG | + | chr5.4:57116617-57116636 | None:intergenic | 35.0% | |
| ATAGCTTCATAGCTTCAAGA+GGG | - | chr5.4:57116312-57116331 | MS.gene26138:CDS | 35.0% | |
| CCAATTACTCAAAACATGCA+TGG | + | chr5.4:57116408-57116427 | None:intergenic | 35.0% | |
| GAGGGAAATGAAGAGTAAAT+TGG | + | chr5.4:57115559-57115578 | None:intergenic | 35.0% | |
| GAGGTTTGTGAATAAAAGGA+GGG | + | chr5.4:57115577-57115596 | None:intergenic | 35.0% | |
| GGAAATGAAGAGTAAATTGG+CGG | + | chr5.4:57115556-57115575 | None:intergenic | 35.0% | |
| TCTCAAAGACTCCTACTAAA+AGG | - | chr5.4:57115882-57115901 | MS.gene26138:CDS | 35.0% | |
| TGAGGTTTGTGAATAAAAGG+AGG | + | chr5.4:57115578-57115597 | None:intergenic | 35.0% | |
| ! | GACCTATGATTGAAAGTGTA+GGG | - | chr5.4:57116546-57116565 | MS.gene26138:CDS | 35.0% |
| ! | TGGACCATTTCTTTTGTGTT+GGG | - | chr5.4:57116501-57116520 | MS.gene26138:CDS | 35.0% |
| ! | TTGGACCATTTCTTTTGTGT+TGG | - | chr5.4:57116500-57116519 | MS.gene26138:CDS | 35.0% |
| !! | AAAATTTGGTGTACAAGTGG+AGG | + | chr5.4:57115631-57115650 | None:intergenic | 35.0% |
| !! | AAGAAAGTTAAGTGGGTTAC+TGG | - | chr5.4:57116572-57116591 | MS.gene26138:CDS | 35.0% |
| !! | AGAAAGTTAAGTGGGTTACT+GGG | - | chr5.4:57116573-57116592 | MS.gene26138:CDS | 35.0% |
| !! | AGGAAAGAAAGAGTGTTATG+AGG | + | chr5.4:57115596-57115615 | None:intergenic | 35.0% |
| !! | CCATGCATGTTTTGAGTAAT+TGG | - | chr5.4:57116405-57116424 | MS.gene26138:CDS | 35.0% |
| !!! | GTTTTAGAAACACGTAAACC+CGG | - | chr5.4:57116176-57116195 | MS.gene26138:CDS | 35.0% |
| AAGTTTCGGTTGAAACCTAG+TGG | + | chr5.4:57115747-57115766 | None:intergenic | 40.0% | |
| ACTGGGAAGAAGCTTGATAA+GGG | - | chr5.4:57116590-57116609 | MS.gene26138:CDS | 40.0% | |
| AGAAGCCATTCAAGGATTCA+TGG | - | chr5.4:57116651-57116670 | MS.gene26138:CDS | 40.0% | |
| AGTTTCGGTTGAAACCTAGT+GGG | + | chr5.4:57115746-57115765 | None:intergenic | 40.0% | |
| GAAGAGTAAATTGGCGGTTA+GGG | + | chr5.4:57115550-57115569 | None:intergenic | 40.0% | |
| GATCCCCAACACAAAAGAAA+TGG | + | chr5.4:57116508-57116527 | None:intergenic | 40.0% | |
| GTTTATAGGGTTCTTAGACC+TGG | - | chr5.4:57116464-57116483 | MS.gene26138:CDS | 40.0% | |
| TACTGGGAAGAAGCTTGATA+AGG | - | chr5.4:57116589-57116608 | MS.gene26138:CDS | 40.0% | |
| TAGCTTCATAGCTTCAAGAG+GGG | - | chr5.4:57116313-57116332 | MS.gene26138:CDS | 40.0% | |
| TGAAGAGTAAATTGGCGGTT+AGG | + | chr5.4:57115551-57115570 | None:intergenic | 40.0% | |
| TGATAAGGGACCTCAATTTC+AGG | - | chr5.4:57116604-57116623 | MS.gene26138:CDS | 40.0% | |
| TGGACAAACCCTAGATCAAA+CGG | - | chr5.4:57116131-57116150 | MS.gene26138:CDS | 40.0% | |
| TTTGTTGGAGAAGCCATTCA+AGG | - | chr5.4:57116643-57116662 | MS.gene26138:CDS | 40.0% | |
| ! | AAACCTAGTGGGAGTTTTTG+TGG | + | chr5.4:57115735-57115754 | None:intergenic | 40.0% |
| ! | AAATTGGCGGTTAGGGTTTT+TGG | + | chr5.4:57115543-57115562 | None:intergenic | 40.0% |
| ! | GGACCATTTCTTTTGTGTTG+GGG | - | chr5.4:57116502-57116521 | MS.gene26138:CDS | 40.0% |
| ! | GGACCTATGATTGAAAGTGT+AGG | - | chr5.4:57116545-57116564 | MS.gene26138:CDS | 40.0% |
| ! | GTTCGAATCGGTTTAGACAT+AGG | - | chr5.4:57116203-57116222 | MS.gene26138:CDS | 40.0% |
| ! | TTGATCTAGGGTTTGTCCAA+CGG | + | chr5.4:57116130-57116149 | None:intergenic | 40.0% |
| !! | CGGTTAGGGTTTTTGGATTA+GGG | + | chr5.4:57115536-57115555 | None:intergenic | 40.0% |
| !! | GTGGTGGTGGTTGTAAAATT+TGG | + | chr5.4:57115645-57115664 | None:intergenic | 40.0% |
| ACAAGTGGAGGAATGGTAAG+TGG | + | chr5.4:57115619-57115638 | None:intergenic | 45.0% | |
| AGAAACACGTAAACCCGGTT+CGG | - | chr5.4:57116181-57116200 | MS.gene26138:CDS | 45.0% | |
| ATAGGGTTCTTAGACCTGGT+GGG | - | chr5.4:57116468-57116487 | MS.gene26138:CDS | 45.0% | |
| GCTTCTCCAACAAAGCAGAA+AGG | + | chr5.4:57116637-57116656 | None:intergenic | 45.0% | |
| TATAGGGTTCTTAGACCTGG+TGG | - | chr5.4:57116467-57116486 | MS.gene26138:CDS | 45.0% | |
| TCACCACAAAAACTCCCACT+AGG | - | chr5.4:57115729-57115748 | MS.gene26138:CDS | 45.0% | |
| TTCATGTCCTACGACGTGAA+CGG | - | chr5.4:57115834-57115853 | MS.gene26138:CDS | 45.0% | |
| TTGGTGTACAAGTGGAGGAA+TGG | + | chr5.4:57115626-57115645 | None:intergenic | 45.0% | |
| ! | ATCGGTTTAGACATAGGTGG+TGG | - | chr5.4:57116209-57116228 | MS.gene26138:CDS | 45.0% |
| ! | CGAATCGGTTTAGACATAGG+TGG | - | chr5.4:57116206-57116225 | MS.gene26138:CDS | 45.0% |
| ! | TAGTGGGAGTTTTTGTGGTG+AGG | + | chr5.4:57115730-57115749 | None:intergenic | 45.0% |
| !! | GCGGTTAGGGTTTTTGGATT+AGG | + | chr5.4:57115537-57115556 | None:intergenic | 45.0% |
| !! | TAAACCGATTCGAACCGAAC+CGG | + | chr5.4:57116198-57116217 | None:intergenic | 45.0% |
| !!! | TTAGACCTGGTGGGTTGTTT+TGG | - | chr5.4:57116477-57116496 | MS.gene26138:CDS | 45.0% |
| ACATGATCCGTTCACGTCGT+AGG | + | chr5.4:57115844-57115863 | None:intergenic | 50.0% | |
| ACGGTCAATGAGACACGTGT+AGG | + | chr5.4:57116042-57116061 | None:intergenic | 50.0% | |
| AGTGGAGGAATGGTAAGTGG+AGG | + | chr5.4:57115616-57115635 | None:intergenic | 50.0% | |
| ATGAAGCTGCGGATATCGTC+GGG | + | chr5.4:57115819-57115838 | None:intergenic | 50.0% | |
| ATGGGCGATGGGAAATTAGG+TGG | + | chr5.4:57115948-57115967 | None:intergenic | 50.0% | |
| CACACGACGGAGGAATTTGA+GGG | + | chr5.4:57115999-57116018 | None:intergenic | 50.0% | |
| CATGAAGCTGCGGATATCGT+CGG | + | chr5.4:57115820-57115839 | None:intergenic | 50.0% | |
| GAGGTGGAGGCAAAGAATTC+CGG | + | chr5.4:57115711-57115730 | None:intergenic | 50.0% | |
| GTGTAGACCAGAGACTGGAA+GGG | + | chr5.4:57115977-57115996 | None:intergenic | 50.0% | |
| TCCAACCAAAACAACCCACC+AGG | + | chr5.4:57116485-57116504 | None:intergenic | 50.0% | |
| TGAGAGAGAATCTCGTCGTC+TGG | + | chr5.4:57115867-57115886 | None:intergenic | 50.0% | |
| TGGAGGCAAAGAATTCCGGT+GGG | + | chr5.4:57115707-57115726 | None:intergenic | 50.0% | |
| TGGTGGAGTAGCAACTTTCG+CGG | - | chr5.4:57116226-57116245 | MS.gene26138:CDS | 50.0% | |
| TGTGTAAGCAGTCCACACGA+CGG | + | chr5.4:57116012-57116031 | None:intergenic | 50.0% | |
| ! | CGGTGTCGGAGTTGAAGTTT+CGG | + | chr5.4:57115761-57115780 | None:intergenic | 50.0% |
| ! | GAGGCTCACAGCCTTTTAGT+AGG | + | chr5.4:57115896-57115915 | None:intergenic | 50.0% |
| ! | GAGTTTTTGTGGTGAGGTGG+AGG | + | chr5.4:57115724-57115743 | None:intergenic | 50.0% |
| ! | TGGGAGTTTTTGTGGTGAGG+TGG | + | chr5.4:57115727-57115746 | None:intergenic | 50.0% |
| !! | AAACCCGGTTCGGTTCGAAT+CGG | - | chr5.4:57116191-57116210 | MS.gene26138:CDS | 50.0% |
| !! | AAACCGATTCGAACCGAACC+GGG | + | chr5.4:57116197-57116216 | None:intergenic | 50.0% |
| !!! | ACCTGGTGGGTTGTTTTGGT+TGG | - | chr5.4:57116481-57116500 | MS.gene26138:CDS | 50.0% |
| ACCAGAGACTGGAAGGGAAG+GGG | + | chr5.4:57115971-57115990 | None:intergenic | 55.0% | |
| AGACCAGAGACTGGAAGGGA+AGG | + | chr5.4:57115973-57115992 | None:intergenic | 55.0% | |
| AGACTGGAAGGGAAGGGGAT+GGG | + | chr5.4:57115966-57115985 | None:intergenic | 55.0% | |
| AGGCAAAGAATTCCGGTGGG+AGG | + | chr5.4:57115704-57115723 | None:intergenic | 55.0% | |
| ATCGAAGCCTCTCTGTGTGC+GGG | + | chr5.4:57116066-57116085 | None:intergenic | 55.0% | |
| CATCGAAGCCTCTCTGTGTG+CGG | + | chr5.4:57116067-57116086 | None:intergenic | 55.0% | |
| CCACACGACGGAGGAATTTG+AGG | + | chr5.4:57116000-57116019 | None:intergenic | 55.0% | |
| CCTCAAATTCCTCCGTCGTG+TGG | - | chr5.4:57115997-57116016 | MS.gene26138:CDS | 55.0% | |
| CGTCGTAGGACATGAAGCTG+CGG | + | chr5.4:57115830-57115849 | None:intergenic | 55.0% | |
| GACCAGAGACTGGAAGGGAA+GGG | + | chr5.4:57115972-57115991 | None:intergenic | 55.0% | |
| GCGGATATCGTCGGGAAAGA+GGG | + | chr5.4:57115811-57115830 | None:intergenic | 55.0% | |
| GGGATGGGCGATGGGAAATT+AGG | + | chr5.4:57115951-57115970 | None:intergenic | 55.0% | |
| GGTGTAGACCAGAGACTGGA+AGG | + | chr5.4:57115978-57115997 | None:intergenic | 55.0% | |
| GTGGAGGCAAAGAATTCCGG+TGG | + | chr5.4:57115708-57115727 | None:intergenic | 55.0% | |
| TGCGGATATCGTCGGGAAAG+AGG | + | chr5.4:57115812-57115831 | None:intergenic | 55.0% | |
| TTGTCCAACGGTGCTTCTCG+CGG | + | chr5.4:57116118-57116137 | None:intergenic | 55.0% | |
| ! | TGAGGGTGTAGACCAGAGAC+TGG | + | chr5.4:57115982-57116001 | None:intergenic | 55.0% |
| !! | AATTAGGTGGTGCTGCCGGA+CGG | + | chr5.4:57115935-57115954 | None:intergenic | 55.0% |
| !! | GGGAAATTAGGTGGTGCTGC+CGG | + | chr5.4:57115939-57115958 | None:intergenic | 55.0% |
| AAGGGAAGGGGATGGGCGAT+GGG | + | chr5.4:57115959-57115978 | None:intergenic | 60.0% | |
| AGCCTCTCTGTGTGCGGGAA+CGG | + | chr5.4:57116061-57116080 | None:intergenic | 60.0% | |
| GAGACTGGAAGGGAAGGGGA+TGG | + | chr5.4:57115967-57115986 | None:intergenic | 60.0% | |
| GTAAGCAGTCCACACGACGG+AGG | + | chr5.4:57116009-57116028 | None:intergenic | 60.0% | |
| GTCGCCAGCGCTGTCTTCAA+CGG | + | chr5.4:57115676-57115695 | None:intergenic | 60.0% | |
| TCCCCTTCCCTTCCAGTCTC+TGG | - | chr5.4:57115967-57115986 | MS.gene26138:CDS | 60.0% | |
| TGGCGACAGTAACCTCCCAC+CGG | - | chr5.4:57115689-57115708 | MS.gene26138:CDS | 60.0% | |
| ! | AAAGAGGGTGCATGCGCTGC+CGG | + | chr5.4:57115796-57115815 | None:intergenic | 60.0% |
| ACCGCCGTTGAAGACAGCGC+TGG | - | chr5.4:57115669-57115688 | MS.gene26138:CDS | 65.0% | |
| AGCGCTGTCTTCAACGGCGG+TGG | + | chr5.4:57115670-57115689 | None:intergenic | 65.0% | |
| GAAGGGAAGGGGATGGGCGA+TGG | + | chr5.4:57115960-57115979 | None:intergenic | 65.0% | |
| GACCGTTCCCGCACACAGAG+AGG | - | chr5.4:57116056-57116075 | MS.gene26138:CDS | 65.0% | |
| GCCAGCGCTGTCTTCAACGG+CGG | + | chr5.4:57115673-57115692 | None:intergenic | 65.0% | |
| GTCTTCAACGGCGGTGGCTG+TGG | + | chr5.4:57115664-57115683 | None:intergenic | 65.0% | |
| TTCAACGGCGGTGGCTGTGG+TGG | + | chr5.4:57115661-57115680 | None:intergenic | 65.0% | |
| AACGGCGGTGGCTGTGGTGG+TGG | + | chr5.4:57115658-57115677 | None:intergenic | 70.0% | |
| !! | ACGGCCGCGAGAAGCACCGT+TGG | - | chr5.4:57116111-57116130 | MS.gene26138:CDS | 70.0% |
| !! | GTGGTGCTGCCGGACGGCAA+CGG | + | chr5.4:57115929-57115948 | None:intergenic | 70.0% |
| AGGGTGCATGCGCTGCCGGC+GGG | + | chr5.4:57115792-57115811 | None:intergenic | 75.0% | |
| GACACCGTCCACCCTCCCGC+CGG | - | chr5.4:57115774-57115793 | MS.gene26138:CDS | 75.0% | |
| GGCGGGAGGGTGGACGGTGT+CGG | + | chr5.4:57115775-57115794 | None:intergenic | 75.0% | |
| GTGCTGCCGGACGGCAACGG+CGG | + | chr5.4:57115926-57115945 | None:intergenic | 75.0% | |
| TGCATGCGCTGCCGGCGGGA+GGG | + | chr5.4:57115788-57115807 | None:intergenic | 75.0% | |
| ! | GAGGGTGCATGCGCTGCCGG+CGG | + | chr5.4:57115793-57115812 | None:intergenic | 75.0% |
| ! | ATGCGCTGCCGGCGGGAGGG+TGG | + | chr5.4:57115785-57115804 | None:intergenic | 80.0% |
| ! | CCCTCGCCGCCGTTGCCGTC+CGG | - | chr5.4:57115917-57115936 | MS.gene26138:CDS | 80.0% |
| ! | CCGGACGGCAACGGCGGCGA+GGG | + | chr5.4:57115920-57115939 | None:intergenic | 80.0% |
| ! | CGGCAACGGCGGCGAGGGAG+AGG | + | chr5.4:57115915-57115934 | None:intergenic | 80.0% |
| ! | GCTGCCGGCGGGAGGGTGGA+CGG | + | chr5.4:57115781-57115800 | None:intergenic | 80.0% |
| ! | GTGCATGCGCTGCCGGCGGG+AGG | + | chr5.4:57115789-57115808 | None:intergenic | 80.0% |
| ! | GCCGGACGGCAACGGCGGCG+AGG | + | chr5.4:57115921-57115940 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 57115516 | 57116676 | 57115516 | ID=MS.gene26138 |
| chr5.4 | mRNA | 57115516 | 57116676 | 57115516 | ID=MS.gene26138.t1;Parent=MS.gene26138 |
| chr5.4 | exon | 57115516 | 57116676 | 57115516 | ID=MS.gene26138.t1.exon1;Parent=MS.gene26138.t1 |
| chr5.4 | CDS | 57115516 | 57116676 | 57115516 | ID=cds.MS.gene26138.t1;Parent=MS.gene26138.t1 |
| Gene Sequence |
| Protein sequence |
