Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26348.t1 | KEH31018.1 | 85.3 | 382 | 40 | 2 | 1 | 382 | 1 | 366 | 1.80E-174 | 622.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26348.t1 | Q9S7T8 | 51.8 | 386 | 179 | 4 | 7 | 385 | 5 | 390 | 1.5e-110 | 401.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26348.t1 | A0A072UPQ2 | 85.3 | 382 | 40 | 2 | 1 | 382 | 1 | 366 | 1.3e-174 | 622.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26348 | MS.gene065944 | PPI |
| MS.gene26348 | MS.gene031697 | PPI |
| MS.gene006610 | MS.gene26348 | PPI |
| MS.gene065945 | MS.gene26348 | PPI |
| MS.gene26348 | MS.gene045585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26348.t1 | MTR_4g088535 | 85.340 | 382 | 40 | 2 | 1 | 382 | 1 | 366 | 0.0 | 632 |
| MS.gene26348.t1 | MTR_8g027395 | 77.895 | 380 | 84 | 0 | 6 | 385 | 16 | 395 | 0.0 | 613 |
| MS.gene26348.t1 | MTR_8g027420 | 78.158 | 380 | 72 | 1 | 6 | 385 | 5 | 373 | 0.0 | 605 |
| MS.gene26348.t1 | MTR_4g088525 | 79.501 | 361 | 74 | 0 | 26 | 386 | 8 | 368 | 0.0 | 577 |
| MS.gene26348.t1 | MTR_3g101010 | 71.615 | 384 | 105 | 1 | 7 | 386 | 5 | 388 | 0.0 | 531 |
| MS.gene26348.t1 | MTR_3g018740 | 71.354 | 384 | 107 | 2 | 7 | 387 | 5 | 388 | 0.0 | 525 |
| MS.gene26348.t1 | MTR_4g045707 | 67.969 | 384 | 121 | 2 | 5 | 386 | 4 | 387 | 0.0 | 512 |
| MS.gene26348.t1 | MTR_3g101030 | 63.145 | 407 | 123 | 7 | 5 | 386 | 24 | 428 | 1.20e-169 | 481 |
| MS.gene26348.t1 | MTR_2g045980 | 64.858 | 387 | 127 | 3 | 7 | 387 | 5 | 388 | 1.90e-168 | 476 |
| MS.gene26348.t1 | MTR_8g461160 | 62.982 | 389 | 136 | 2 | 5 | 385 | 4 | 392 | 1.47e-167 | 474 |
| MS.gene26348.t1 | MTR_2g046030 | 64.083 | 387 | 130 | 3 | 7 | 387 | 5 | 388 | 3.01e-167 | 473 |
| MS.gene26348.t1 | MTR_3g048000 | 62.371 | 388 | 125 | 4 | 4 | 387 | 22 | 392 | 3.40e-166 | 471 |
| MS.gene26348.t1 | MTR_3g101180 | 62.785 | 395 | 133 | 3 | 5 | 385 | 4 | 398 | 8.87e-166 | 470 |
| MS.gene26348.t1 | MTR_7g050810 | 59.173 | 387 | 150 | 2 | 7 | 385 | 16 | 402 | 1.04e-157 | 449 |
| MS.gene26348.t1 | MTR_3g101130 | 60.881 | 386 | 140 | 3 | 7 | 385 | 6 | 387 | 3.80e-157 | 447 |
| MS.gene26348.t1 | MTR_7g451890 | 58.140 | 387 | 154 | 2 | 7 | 385 | 14 | 400 | 1.20e-154 | 442 |
| MS.gene26348.t1 | MTR_7g050750 | 58.140 | 387 | 154 | 2 | 7 | 385 | 8 | 394 | 2.71e-154 | 441 |
| MS.gene26348.t1 | MTR_7g047780 | 58.656 | 387 | 152 | 2 | 7 | 385 | 14 | 400 | 1.41e-153 | 439 |
| MS.gene26348.t1 | MTR_3g101050 | 59.391 | 394 | 129 | 6 | 5 | 387 | 25 | 398 | 1.36e-147 | 424 |
| MS.gene26348.t1 | MTR_3g015620 | 59.690 | 387 | 124 | 4 | 7 | 385 | 16 | 378 | 4.95e-145 | 416 |
| MS.gene26348.t1 | MTR_3g102920 | 57.069 | 389 | 123 | 6 | 5 | 385 | 56 | 408 | 6.45e-137 | 397 |
| MS.gene26348.t1 | MTR_3g101200 | 52.987 | 385 | 150 | 4 | 7 | 385 | 31 | 390 | 2.99e-127 | 372 |
| MS.gene26348.t1 | MTR_3g101190 | 54.062 | 357 | 105 | 3 | 29 | 385 | 13 | 310 | 7.76e-122 | 355 |
| MS.gene26348.t1 | MTR_3g100995 | 65.748 | 254 | 82 | 3 | 135 | 385 | 11 | 262 | 2.92e-115 | 337 |
| MS.gene26348.t1 | MTR_3g018747 | 66.667 | 261 | 69 | 3 | 131 | 387 | 9 | 255 | 2.70e-112 | 328 |
| MS.gene26348.t1 | MTR_3g100010 | 54.386 | 342 | 100 | 5 | 6 | 308 | 12 | 336 | 7.66e-112 | 331 |
| MS.gene26348.t1 | MTR_7g050830 | 52.273 | 308 | 114 | 3 | 13 | 298 | 22 | 318 | 2.69e-101 | 303 |
| MS.gene26348.t1 | MTR_3g114310 | 44.961 | 387 | 196 | 10 | 12 | 384 | 24 | 407 | 1.27e-96 | 294 |
| MS.gene26348.t1 | MTR_3g015760 | 56.727 | 275 | 111 | 4 | 116 | 385 | 8 | 279 | 4.53e-96 | 288 |
| MS.gene26348.t1 | MTR_3g100520 | 64.352 | 216 | 66 | 4 | 172 | 385 | 1 | 207 | 7.45e-89 | 267 |
| MS.gene26348.t1 | MTR_3g101110 | 58.159 | 239 | 66 | 4 | 131 | 361 | 68 | 280 | 1.85e-84 | 259 |
| MS.gene26348.t1 | MTR_3g111160 | 66.995 | 203 | 64 | 2 | 187 | 386 | 17 | 219 | 3.20e-84 | 256 |
| MS.gene26348.t1 | MTR_3g099970 | 63.265 | 196 | 55 | 2 | 131 | 326 | 20 | 198 | 2.80e-81 | 247 |
| MS.gene26348.t1 | MTR_2g046410 | 60.550 | 218 | 77 | 4 | 176 | 387 | 135 | 349 | 3.02e-77 | 242 |
| MS.gene26348.t1 | MTR_3g102870 | 67.925 | 159 | 51 | 0 | 196 | 354 | 3 | 161 | 2.37e-69 | 216 |
| MS.gene26348.t1 | MTR_3g111150 | 62.428 | 173 | 41 | 1 | 10 | 182 | 2 | 150 | 2.84e-67 | 210 |
| MS.gene26348.t1 | MTR_3g101020 | 55.435 | 184 | 53 | 3 | 205 | 385 | 1 | 158 | 9.54e-60 | 191 |
| MS.gene26348.t1 | MTR_3g101150 | 61.783 | 157 | 52 | 1 | 237 | 385 | 1 | 157 | 1.12e-59 | 191 |
| MS.gene26348.t1 | MTR_3g100990 | 59.333 | 150 | 60 | 1 | 7 | 156 | 5 | 153 | 3.14e-49 | 174 |
| MS.gene26348.t1 | MTR_4g093550 | 66.667 | 84 | 28 | 0 | 7 | 90 | 6 | 89 | 1.76e-29 | 110 |
| MS.gene26348.t1 | MTR_6g046890 | 62.500 | 72 | 27 | 0 | 15 | 86 | 7 | 78 | 1.51e-18 | 81.6 |
| MS.gene26348.t1 | MTR_3g101140 | 55.882 | 68 | 25 | 1 | 324 | 386 | 48 | 115 | 6.98e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26348.t1 | AT1G47710 | 51.813 | 386 | 179 | 4 | 7 | 385 | 5 | 390 | 4.14e-141 | 407 |
| MS.gene26348.t1 | AT1G47710 | 51.813 | 386 | 179 | 4 | 7 | 385 | 32 | 417 | 1.27e-140 | 407 |
| MS.gene26348.t1 | AT3G45220 | 46.907 | 388 | 194 | 4 | 7 | 384 | 5 | 390 | 6.26e-121 | 356 |
| MS.gene26348.t1 | AT2G25240 | 48.958 | 384 | 184 | 7 | 7 | 384 | 5 | 382 | 7.28e-121 | 355 |
| MS.gene26348.t1 | AT2G26390 | 46.392 | 388 | 192 | 7 | 7 | 384 | 5 | 386 | 5.24e-115 | 340 |
| MS.gene26348.t1 | AT1G64030 | 42.784 | 388 | 191 | 5 | 7 | 384 | 5 | 371 | 3.90e-103 | 310 |
| MS.gene26348.t1 | AT2G14540 | 44.186 | 387 | 185 | 7 | 7 | 384 | 33 | 397 | 1.27e-99 | 302 |
| MS.gene26348.t1 | AT1G62170 | 42.700 | 363 | 177 | 4 | 31 | 384 | 91 | 431 | 1.64e-98 | 300 |
| MS.gene26348.t1 | AT1G62170 | 39.141 | 396 | 177 | 5 | 31 | 384 | 91 | 464 | 2.27e-91 | 283 |
| MS.gene26348.t1 | AT2G35580 | 42.061 | 359 | 179 | 7 | 35 | 384 | 33 | 371 | 5.21e-87 | 268 |
| MS.gene26348.t1 | AT1G64010 | 44.907 | 216 | 95 | 4 | 172 | 384 | 1 | 195 | 5.58e-59 | 190 |
| MS.gene26348.t1 | AT1G64010 | 44.554 | 202 | 88 | 4 | 186 | 384 | 1 | 181 | 4.46e-53 | 174 |
| MS.gene26348.t1 | AT1G62160 | 40.341 | 176 | 84 | 4 | 211 | 384 | 62 | 218 | 1.31e-33 | 125 |
| MS.gene26348.t1 | AT1G63280 | 49.565 | 115 | 54 | 2 | 131 | 243 | 8 | 120 | 1.77e-30 | 113 |
| MS.gene26348.t1 | AT1G51330 | 55.789 | 95 | 42 | 0 | 130 | 224 | 30 | 124 | 7.93e-28 | 108 |
| MS.gene26348.t1 | AT1G64020 | 33.929 | 112 | 71 | 3 | 12 | 121 | 10 | 120 | 5.54e-13 | 65.9 |
Find 79 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATGCAAATTTGAATTT+TGG | 0.142435 | 4.1:+21444592 | None:intergenic |
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 4.1:-21445023 | MS.gene26348:CDS |
| CCAAAATTCAAATTTGCATA+TGG | 0.259987 | 4.1:-21444592 | MS.gene26348:CDS |
| AATCGTGTCTCAAGATTATA+AGG | 0.307189 | 4.1:-21446457 | MS.gene26348:CDS |
| CTCAAAGATGCTACTTCTTC+CGG | 0.332638 | 4.1:-21446552 | MS.gene26348:CDS |
| GTCCCGCAAAGAGGATTGTT+TGG | 0.348276 | 4.1:+21444311 | None:intergenic |
| CTTGTCATCCAATCAGGAAA+TGG | 0.349930 | 4.1:+21444886 | None:intergenic |
| ACCCAAACAATCCTCTTTGC+GGG | 0.361274 | 4.1:-21444313 | MS.gene26348:CDS |
| TCTCCTTCGTCGACGGTGTT+TGG | 0.362110 | 4.1:-21446518 | MS.gene26348:CDS |
| TCCCGCAAAGAGGATTGTTT+GGG | 0.373202 | 4.1:+21444312 | None:intergenic |
| GGAGTAATCCATTTCCTGAT+TGG | 0.397440 | 4.1:-21444894 | MS.gene26348:CDS |
| CTTCGTCGACGGTGTTTGGC+TGG | 0.398379 | 4.1:-21446514 | MS.gene26348:CDS |
| CAAAATTCAAATTTGCATAT+GGG | 0.407560 | 4.1:-21444591 | MS.gene26348:CDS |
| TTCTTTGGAGAAAAGATGAT+TGG | 0.408590 | 4.1:+21446737 | None:intergenic |
| TATTTGCTTGTCATCCAATC+AGG | 0.409872 | 4.1:+21444880 | None:intergenic |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.417147 | 4.1:-21444709 | MS.gene26348:CDS |
| CCAACTCGCACTCTATTACT+AGG | 0.420097 | 4.1:+21444628 | None:intergenic |
| TTGAGACACGATTTGTTTGA+AGG | 0.423192 | 4.1:+21446467 | None:intergenic |
| GAAGGAGAGGTGAGGACCAC+CGG | 0.426414 | 4.1:+21446533 | None:intergenic |
| TGAAGGAAGATTGAAGAGAA+AGG | 0.431049 | 4.1:+21446484 | None:intergenic |
| TTTCTCATTTACTTCAATGA+AGG | 0.433659 | 4.1:+21444444 | None:intergenic |
| ACTGTAGCTGCTGCAGCCAG+TGG | 0.451974 | 4.1:-21444418 | MS.gene26348:CDS |
| GAAGGAAGATTGAAGAGAAA+GGG | 0.453228 | 4.1:+21446485 | None:intergenic |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 4.1:-21445022 | MS.gene26348:CDS |
| GATGATCAGTTGATTTGAAA+CGG | 0.457664 | 4.1:+21446610 | None:intergenic |
| GTCAGCTTTGGTTGAGAAGG+TGG | 0.459796 | 4.1:-21444683 | MS.gene26348:CDS |
| GTGCTCAGCATCATCGCTGC+TGG | 0.460796 | 4.1:-21446672 | MS.gene26348:CDS |
| TCTCGAATGCTGAAGGATCT+AGG | 0.461668 | 4.1:-21444559 | MS.gene26348:CDS |
| TACTAGGAAGCATGTGGTCT+AGG | 0.463533 | 4.1:+21444644 | None:intergenic |
| TGCAGCCAGTGGTGCACTTG+TGG | 0.465613 | 4.1:-21444407 | MS.gene26348:CDS |
| ATCAAGGTTGGTGGTCATGA+AGG | 0.471015 | 4.1:+21444819 | None:intergenic |
| ACTTATGATCATTCAGAAAG+AGG | 0.474877 | 4.1:+21444277 | None:intergenic |
| AAGCTCTAATAAACTGATCA+AGG | 0.475321 | 4.1:+21444803 | None:intergenic |
| ATCATCGCTGCTGGCTCTGA+GGG | 0.478625 | 4.1:-21446663 | MS.gene26348:CDS |
| CGATGATGCTGAGCACAACT+TGG | 0.481338 | 4.1:+21446679 | None:intergenic |
| CATGGCCACAAGTGCACCAC+TGG | 0.482503 | 4.1:+21444402 | None:intergenic |
| AACCCAAACAATCCTCTTTG+CGG | 0.485811 | 4.1:-21444314 | MS.gene26348:CDS |
| CGGAAGAAGTAGCATCTTTG+AGG | 0.492859 | 4.1:+21446553 | None:intergenic |
| TGGTGAGAGAAACTTTCGTT+TGG | 0.493673 | 4.1:+21446763 | None:intergenic |
| GTGGCCATGTGTATTCCATC+TGG | 0.494909 | 4.1:-21444388 | MS.gene26348:CDS |
| ATAAAAGAACTTCTTCCTCA+AGG | 0.498947 | 4.1:-21444976 | MS.gene26348:CDS |
| TGCATTAGCAAAGATGAGTC+TGG | 0.499282 | 4.1:+21444936 | None:intergenic |
| GAAGGACTTGTGAAATATGT+TGG | 0.499945 | 4.1:+21444462 | None:intergenic |
| AAAAGATGGTCTGTCAGCTT+TGG | 0.500468 | 4.1:-21444695 | MS.gene26348:CDS |
| TTCATTGAAGTAAATGAGAA+AGG | 0.501361 | 4.1:-21444442 | MS.gene26348:CDS |
| CATCATCGCTGCTGGCTCTG+AGG | 0.504339 | 4.1:-21446664 | MS.gene26348:CDS |
| TCTAATAAACTGATCAAGGT+TGG | 0.505126 | 4.1:+21444807 | None:intergenic |
| GTCAAACCTCCAGAAGAGAA+AGG | 0.505347 | 4.1:+21444526 | None:intergenic |
| CTTCGTCTTCCTTATAAGCA+AGG | 0.506335 | 4.1:-21444763 | MS.gene26348:CDS |
| AAAATGGTGGACTCACTTGA+AGG | 0.507736 | 4.1:-21444502 | MS.gene26348:CDS |
| TCTCTAATTAGAAATAAGAA+AGG | 0.509129 | 4.1:+21444343 | None:intergenic |
| AGTAATAGAGTGCGAGTTGG+TGG | 0.515787 | 4.1:-21444625 | MS.gene26348:CDS |
| TAAAAGAACTTCTTCCTCAA+GGG | 0.519561 | 4.1:-21444975 | MS.gene26348:CDS |
| CTCTAATTAGAAATAAGAAA+GGG | 0.536391 | 4.1:+21444344 | None:intergenic |
| GCTATAAAGTCTACTCCAGA+TGG | 0.537833 | 4.1:+21444373 | None:intergenic |
| GAAGAAGAACAAACAATGGC+GGG | 0.540611 | 4.1:-21446810 | None:intergenic |
| CCTCACCTCTCCTTCGTCGA+CGG | 0.544904 | 4.1:-21446525 | MS.gene26348:CDS |
| TGAAACTTCTCGAATGCTGA+AGG | 0.558916 | 4.1:-21444566 | MS.gene26348:CDS |
| TCTGAATGGCAGCTCAGTCA+AGG | 0.571104 | 4.1:-21444845 | MS.gene26348:CDS |
| AATAAACTGATCAAGGTTGG+TGG | 0.575387 | 4.1:+21444810 | None:intergenic |
| TCTGTCAGCTTTGGTTGAGA+AGG | 0.577265 | 4.1:-21444686 | MS.gene26348:CDS |
| GAAATATGTTGGAAACTGAA+AGG | 0.583772 | 4.1:+21444473 | None:intergenic |
| TTCTGTTGATTTCAAGAACG+AGG | 0.587661 | 4.1:-21446424 | MS.gene26348:intron |
| TCAAGGTTGGTGGTCATGAA+GGG | 0.598587 | 4.1:+21444820 | None:intergenic |
| TGACTGAGCTGCCATTCAGA+AGG | 0.600319 | 4.1:+21444848 | None:intergenic |
| GAAATCAACAGAAGACAAAG+TGG | 0.613498 | 4.1:+21446434 | None:intergenic |
| CAGCCAAACACCGTCGACGA+AGG | 0.620777 | 4.1:+21446515 | None:intergenic |
| TGAGCACTTGTCCCGCAAAG+AGG | 0.621340 | 4.1:+21444302 | None:intergenic |
| AGAAAGTAGATGAGAGACAG+AGG | 0.627958 | 4.1:+21446581 | None:intergenic |
| AGCACAACTTGGAGAGACAA+TGG | 0.636110 | 4.1:+21446690 | None:intergenic |
| GGAGAAAAGATGATTGGCGA+TGG | 0.639138 | 4.1:+21446743 | None:intergenic |
| AAACACCGTCGACGAAGGAG+AGG | 0.646417 | 4.1:+21446520 | None:intergenic |
| AAAGATGCTACTTCTTCCGG+TGG | 0.648544 | 4.1:-21446549 | MS.gene26348:CDS |
| CCTAGTAATAGAGTGCGAGT+TGG | 0.649890 | 4.1:-21444628 | MS.gene26348:CDS |
| TACTCCAGATGGAATACACA+TGG | 0.653449 | 4.1:+21444384 | None:intergenic |
| CTCTATTACTAGGAAGCATG+TGG | 0.654298 | 4.1:+21444638 | None:intergenic |
| CCGTCGACGAAGGAGAGGTG+AGG | 0.692216 | 4.1:+21446525 | None:intergenic |
| GATCAGTTGATTTGAAACGG+AGG | 0.698316 | 4.1:+21446613 | None:intergenic |
| AAGTTGTCGACTGACCCTTG+AGG | 0.724613 | 4.1:+21444961 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATAAAATAACCACA+TGG | + | chr4.1:21445020-21445039 | None:intergenic | 15.0% |
| !! | AATATATAAAATAACCACAT+GGG | + | chr4.1:21445019-21445038 | None:intergenic | 15.0% |
| !! | ATTGTAATTAAAACATAAGT+TGG | - | chr4.1:21445288-21445307 | MS.gene26348:intron | 15.0% |
| !!! | TAAATTTGACATGATTTTAA+AGG | - | chr4.1:21446025-21446044 | MS.gene26348:intron | 15.0% |
| !! | ACTACTAGAAAATCAAAAAT+AGG | + | chr4.1:21445193-21445212 | None:intergenic | 20.0% |
| !! | CAAAATTCAAATTTGCATAT+GGG | - | chr4.1:21446489-21446508 | MS.gene26348:CDS | 20.0% |
| !! | CTACTAGAAAATCAAAAATA+GGG | + | chr4.1:21445192-21445211 | None:intergenic | 20.0% |
| !! | CTCTAATTAGAAATAAGAAA+GGG | + | chr4.1:21446739-21446758 | None:intergenic | 20.0% |
| !! | TCTCTAATTAGAAATAAGAA+AGG | + | chr4.1:21446740-21446759 | None:intergenic | 20.0% |
| !! | TTTGTTTGTTTGTAAAAACT+CGG | - | chr4.1:21444875-21444894 | MS.gene26348:CDS | 20.0% |
| ! | AAAACAATAAGAAGAAGAAG+AGG | + | chr4.1:21445887-21445906 | None:intergenic | 25.0% |
| ! | AGAAAAGCAAAAATTAGAGA+GGG | - | chr4.1:21445075-21445094 | MS.gene26348:intron | 25.0% |
| ! | CCAAAATTCAAATTTGCATA+TGG | - | chr4.1:21446488-21446507 | MS.gene26348:CDS | 25.0% |
| ! | GAATCCCATCATTTATATAT+GGG | - | chr4.1:21444908-21444927 | MS.gene26348:CDS | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | - | chr4.1:21446058-21446077 | MS.gene26348:intron | 25.0% |
| ! | GGAAAAAAAAATCTACTTTG+TGG | + | chr4.1:21445587-21445606 | None:intergenic | 25.0% |
| ! | TAGAAAAGCAAAAATTAGAG+AGG | - | chr4.1:21445074-21445093 | MS.gene26348:intron | 25.0% |
| ! | TGAAATGGAAAGATTAAATC+AGG | + | chr4.1:21445549-21445568 | None:intergenic | 25.0% |
| ! | TGAATCCCATCATTTATATA+TGG | - | chr4.1:21444907-21444926 | MS.gene26348:CDS | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | - | chr4.1:21446057-21446076 | MS.gene26348:intron | 25.0% |
| ! | TTAGCCCATATATAAATGAT+GGG | + | chr4.1:21444915-21444934 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAGAA+AGG | - | chr4.1:21446638-21446657 | MS.gene26348:CDS | 25.0% |
| ! | TTTAAACGGTGTTTGATTAA+TGG | - | chr4.1:21445437-21445456 | MS.gene26348:intron | 25.0% |
| ! | TTTCATGAATAACACATCAA+AGG | - | chr4.1:21445609-21445628 | MS.gene26348:intron | 25.0% |
| ! | TTTCTCATTTACTTCAATGA+AGG | + | chr4.1:21446639-21446658 | None:intergenic | 25.0% |
| ! | TTTGATTAATGGTTATACTG+TGG | - | chr4.1:21445448-21445467 | MS.gene26348:intron | 25.0% |
| !! | CCATATGCAAATTTGAATTT+TGG | + | chr4.1:21446491-21446510 | None:intergenic | 25.0% |
| !! | GTGGAAACAAATTTAGAATA+CGG | + | chr4.1:21445648-21445667 | None:intergenic | 25.0% |
| !! | TAAATTTGTTTCCACTGTAT+GGG | - | chr4.1:21445653-21445672 | MS.gene26348:intron | 25.0% |
| !! | TGATGTGTTATTCATGAAAA+AGG | + | chr4.1:21445608-21445627 | None:intergenic | 25.0% |
| !! | TGCAAGTAAAGAATTTTTGA+GGG | - | chr4.1:21445136-21445155 | MS.gene26348:intron | 25.0% |
| !! | TTCATGCTTAATTTTAAGCT+AGG | - | chr4.1:21444769-21444788 | MS.gene26348:CDS | 25.0% |
| !! | TTGCAAGTAAAGAATTTTTG+AGG | - | chr4.1:21445135-21445154 | MS.gene26348:intron | 25.0% |
| !!! | ATTGCAATAATGCCTTTTTT+CGG | - | chr4.1:21445370-21445389 | MS.gene26348:intron | 25.0% |
| !!! | GCTAATGCATTGTATTTTAA+AGG | - | chr4.1:21446158-21446177 | MS.gene26348:intron | 25.0% |
| AATAGGGAGGAAAATTAATG+AGG | + | chr4.1:21445176-21445195 | None:intergenic | 30.0% | |
| AATCGTGTCTCAAGATTATA+AGG | - | chr4.1:21444623-21444642 | MS.gene26348:CDS | 30.0% | |
| AGTGTTAGTAATTATACCCT+TGG | - | chr4.1:21445508-21445527 | MS.gene26348:intron | 30.0% | |
| ATAAAAGAACTTCTTCCTCA+AGG | - | chr4.1:21446104-21446123 | MS.gene26348:intron | 30.0% | |
| ATAAAATAACCACATGGGTT+AGG | + | chr4.1:21445014-21445033 | None:intergenic | 30.0% | |
| ATAGGGAGGAAAATTAATGA+GGG | + | chr4.1:21445175-21445194 | None:intergenic | 30.0% | |
| CTAGAAAATCAAAAATAGGG+AGG | + | chr4.1:21445189-21445208 | None:intergenic | 30.0% | |
| GAAATATGTTGGAAACTGAA+AGG | + | chr4.1:21446610-21446629 | None:intergenic | 30.0% | |
| GATGTTATGCTAACTTGATT+TGG | - | chr4.1:21445477-21445496 | MS.gene26348:intron | 30.0% | |
| GTTAGCCCATATATAAATGA+TGG | + | chr4.1:21444916-21444935 | None:intergenic | 30.0% | |
| TAAAAGAACTTCTTCCTCAA+GGG | - | chr4.1:21446105-21446124 | MS.gene26348:intron | 30.0% | |
| TAGTAATTATACCCTTGGTT+TGG | - | chr4.1:21445513-21445532 | MS.gene26348:intron | 30.0% | |
| TATAGCAGTGCTAAATTAGT+TGG | + | chr4.1:21445917-21445936 | None:intergenic | 30.0% | |
| TCTAATAAACTGATCAAGGT+TGG | + | chr4.1:21446276-21446295 | None:intergenic | 30.0% | |
| TTAATCTTTCCATTTCATCC+TGG | - | chr4.1:21445552-21445571 | MS.gene26348:intron | 30.0% | |
| TTACTTGCAACATTTAGTGA+CGG | + | chr4.1:21445125-21445144 | None:intergenic | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | - | chr4.1:21446371-21446390 | MS.gene26348:intron | 30.0% | |
| ! | AAGCTCTAATAAACTGATCA+AGG | + | chr4.1:21446280-21446299 | None:intergenic | 30.0% |
| ! | AATGGTTATACTGTGGTTTT+TGG | - | chr4.1:21445455-21445474 | MS.gene26348:intron | 30.0% |
| ! | CAGTTTATTAGAGCTTTTGA+TGG | - | chr4.1:21446284-21446303 | MS.gene26348:intron | 30.0% |
| ! | CTAAATTTGTTTCCACTGTA+TGG | - | chr4.1:21445652-21445671 | MS.gene26348:intron | 30.0% |
| ! | GATGTTCTTTTCTGATTCTT+TGG | + | chr4.1:21444361-21444380 | None:intergenic | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | - | chr4.1:21446221-21446240 | MS.gene26348:intron | 30.0% |
| ! | TCATCTTTTCCTTGCTTATA+AGG | + | chr4.1:21446329-21446348 | None:intergenic | 30.0% |
| ! | TGCTTAATTTTAAGCTAGGT+TGG | - | chr4.1:21444773-21444792 | MS.gene26348:CDS | 30.0% |
| ! | TTCTTTGGAGAAAAGATGAT+TGG | + | chr4.1:21444346-21444365 | None:intergenic | 30.0% |
| !! | CATTGTATTTTAAAGGAGCA+TGG | - | chr4.1:21446165-21446184 | MS.gene26348:intron | 30.0% |
| !! | GATGATCAGTTGATTTGAAA+CGG | + | chr4.1:21444473-21444492 | None:intergenic | 30.0% |
| !! | TTTGCTTTTCTAGTAGAGAT+GGG | + | chr4.1:21445066-21445085 | None:intergenic | 30.0% |
| !! | TTTTGCTTTTCTAGTAGAGA+TGG | + | chr4.1:21445067-21445086 | None:intergenic | 30.0% |
| !!! | CATAAGTTGGTTTTGTGATT+TGG | - | chr4.1:21445301-21445320 | MS.gene26348:intron | 30.0% |
| AATAAACTGATCAAGGTTGG+TGG | + | chr4.1:21446273-21446292 | None:intergenic | 35.0% | |
| ACAATCACACAACCGAAAAA+AGG | + | chr4.1:21445385-21445404 | None:intergenic | 35.0% | |
| GAAATCAACAGAAGACAAAG+TGG | + | chr4.1:21444649-21444668 | None:intergenic | 35.0% | |
| GAAATTATGAGCCAAACCAA+GGG | + | chr4.1:21445527-21445546 | None:intergenic | 35.0% | |
| GAAGGAAGATTGAAGAGAAA+GGG | + | chr4.1:21444598-21444617 | None:intergenic | 35.0% | |
| GAAGGACTTGTGAAATATGT+TGG | + | chr4.1:21446621-21446640 | None:intergenic | 35.0% | |
| GATATCAGGTTTGAATCCTT+CGG | + | chr4.1:21444954-21444973 | None:intergenic | 35.0% | |
| GTTTGTAAAAACTCGGTATC+CGG | - | chr4.1:21444882-21444901 | MS.gene26348:CDS | 35.0% | |
| TATCACAAACTTGGGCTTAA+TGG | - | chr4.1:21444796-21444815 | MS.gene26348:CDS | 35.0% | |
| TATTTGCTTGTCATCCAATC+AGG | + | chr4.1:21446203-21446222 | None:intergenic | 35.0% | |
| TGAAATCCTACTAACTCTCT+TGG | + | chr4.1:21445702-21445721 | None:intergenic | 35.0% | |
| TGAAGGAAGATTGAAGAGAA+AGG | + | chr4.1:21444599-21444618 | None:intergenic | 35.0% | |
| TTCAAACCTGATATCTTGAG+AGG | - | chr4.1:21444959-21444978 | MS.gene26348:CDS | 35.0% | |
| TTTGTAAAAACTCGGTATCC+GGG | - | chr4.1:21444883-21444902 | MS.gene26348:CDS | 35.0% | |
| ! | ATAAATGATGGGATTCATCC+CGG | + | chr4.1:21444904-21444923 | None:intergenic | 35.0% |
| ! | ATTTAGTGACGGAATTAGAG+AGG | + | chr4.1:21445114-21445133 | None:intergenic | 35.0% |
| ! | ATTTTACCTTTCTCTTCTGG+AGG | - | chr4.1:21446548-21446567 | MS.gene26348:CDS | 35.0% |
| ! | GTGATTTTACCTTTCTCTTC+TGG | - | chr4.1:21446545-21446564 | MS.gene26348:CDS | 35.0% |
| ! | TTCTGGAGGTTTGACAAAAA+TGG | - | chr4.1:21446562-21446581 | MS.gene26348:CDS | 35.0% |
| ! | TTGAGACACGATTTGTTTGA+AGG | + | chr4.1:21444616-21444635 | None:intergenic | 35.0% |
| ! | TTTAGTGACGGAATTAGAGA+GGG | + | chr4.1:21445113-21445132 | None:intergenic | 35.0% |
| !! | GATTTTCTAGTAGTGCATGT+GGG | - | chr4.1:21445199-21445218 | MS.gene26348:intron | 35.0% |
| !! | TAGGTTGGTATCACAAACTT+GGG | - | chr4.1:21444788-21444807 | MS.gene26348:CDS | 35.0% |
| !! | TCTTGCTCTTGGTGTTTAAA+CGG | - | chr4.1:21445423-21445442 | MS.gene26348:intron | 35.0% |
| !! | TGATTTTCTAGTAGTGCATG+TGG | - | chr4.1:21445198-21445217 | MS.gene26348:intron | 35.0% |
| !! | TTCTGTTGATTTCAAGAACG+AGG | - | chr4.1:21444656-21444675 | MS.gene26348:CDS | 35.0% |
| AAAAGATGGTCTGTCAGCTT+TGG | - | chr4.1:21446385-21446404 | MS.gene26348:intron | 40.0% | |
| AACCCAAACAATCCTCTTTG+CGG | - | chr4.1:21446766-21446785 | MS.gene26348:CDS | 40.0% | |
| AACTTGGGCTTAATGGTTCA+AGG | - | chr4.1:21444803-21444822 | MS.gene26348:CDS | 40.0% | |
| AATTGACGATGCAACTTTCC+AGG | - | chr4.1:21445850-21445869 | MS.gene26348:intron | 40.0% | |
| ACATGGTAATTCCCATACAG+TGG | + | chr4.1:21445667-21445686 | None:intergenic | 40.0% | |
| AGAAAGTAGATGAGAGACAG+AGG | + | chr4.1:21444502-21444521 | None:intergenic | 40.0% | |
| CCTTCGGTTCCAAATTATGT+GGG | + | chr4.1:21444938-21444957 | None:intergenic | 40.0% | |
| CTTCGTCTTCCTTATAAGCA+AGG | - | chr4.1:21446317-21446336 | MS.gene26348:intron | 40.0% | |
| CTTGTCATCCAATCAGGAAA+TGG | + | chr4.1:21446197-21446216 | None:intergenic | 40.0% | |
| GCTATAAAGTCTACTCCAGA+TGG | + | chr4.1:21446710-21446729 | None:intergenic | 40.0% | |
| GGAAATTATGAGCCAAACCA+AGG | + | chr4.1:21445528-21445547 | None:intergenic | 40.0% | |
| GGAGTAATCCATTTCCTGAT+TGG | - | chr4.1:21446186-21446205 | MS.gene26348:intron | 40.0% | |
| GTTAACGCATTTCTTGCTCT+TGG | - | chr4.1:21445412-21445431 | MS.gene26348:intron | 40.0% | |
| TACTCCAGATGGAATACACA+TGG | + | chr4.1:21446699-21446718 | None:intergenic | 40.0% | |
| TATACCATGCCAGGATGAAA+TGG | + | chr4.1:21445564-21445583 | None:intergenic | 40.0% | |
| TATGGTCCTCTCAAGATATC+AGG | + | chr4.1:21444968-21444987 | None:intergenic | 40.0% | |
| TCCTTCGGTTCCAAATTATG+TGG | + | chr4.1:21444939-21444958 | None:intergenic | 40.0% | |
| TGAAACTTCTCGAATGCTGA+AGG | - | chr4.1:21446514-21446533 | MS.gene26348:CDS | 40.0% | |
| TGCATTAGCAAAGATGAGTC+TGG | + | chr4.1:21446147-21446166 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | - | chr4.1:21446565-21446584 | MS.gene26348:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | - | chr4.1:21446077-21446096 | MS.gene26348:intron | 40.0% | |
| TGGTGAGAGAAACTTTCGTT+TGG | + | chr4.1:21444320-21444339 | None:intergenic | 40.0% | |
| ! | ATGGGCTAACCCACATAATT+TGG | - | chr4.1:21444926-21444945 | MS.gene26348:CDS | 40.0% |
| ! | CTCAAAGATGCTACTTCTTC+CGG | - | chr4.1:21444528-21444547 | MS.gene26348:CDS | 40.0% |
| ! | CTCTATTACTAGGAAGCATG+TGG | + | chr4.1:21446445-21446464 | None:intergenic | 40.0% |
| ! | GACAGACCATCTTTTGCATT+TGG | + | chr4.1:21446380-21446399 | None:intergenic | 40.0% |
| !! | AAAATGGTGGACTCACTTGA+AGG | - | chr4.1:21446578-21446597 | MS.gene26348:CDS | 40.0% |
| !! | CTAGGTTGGTATCACAAACT+TGG | - | chr4.1:21444787-21444806 | MS.gene26348:CDS | 40.0% |
| !! | GATCAGTTGATTTGAAACGG+AGG | + | chr4.1:21444470-21444489 | None:intergenic | 40.0% |
| ACCCAAACAATCCTCTTTGC+GGG | - | chr4.1:21446767-21446786 | MS.gene26348:CDS | 45.0% | |
| ACTTTGTGGTATACCATGCC+AGG | + | chr4.1:21445573-21445592 | None:intergenic | 45.0% | |
| AGCACAACTTGGAGAGACAA+TGG | + | chr4.1:21444393-21444412 | None:intergenic | 45.0% | |
| ATTTAGTAGCCAACACCACG+AGG | - | chr4.1:21445036-21445055 | MS.gene26348:CDS | 45.0% | |
| CCAACTCGCACTCTATTACT+AGG | + | chr4.1:21446455-21446474 | None:intergenic | 45.0% | |
| CCTAGTAATAGAGTGCGAGT+TGG | - | chr4.1:21446452-21446471 | MS.gene26348:CDS | 45.0% | |
| CGGAAGAAGTAGCATCTTTG+AGG | + | chr4.1:21444530-21444549 | None:intergenic | 45.0% | |
| CTTTCCATTTCATCCTGGCA+TGG | - | chr4.1:21445557-21445576 | MS.gene26348:intron | 45.0% | |
| GAAGAGGAAGAAAGACTTCC+TGG | + | chr4.1:21445871-21445890 | None:intergenic | 45.0% | |
| GCTTCTCCAAGAGAGTTAGT+AGG | - | chr4.1:21445693-21445712 | MS.gene26348:intron | 45.0% | |
| GGAGAAAAGATGATTGGCGA+TGG | + | chr4.1:21444340-21444359 | None:intergenic | 45.0% | |
| GTCAAACCTCCAGAAGAGAA+AGG | + | chr4.1:21446557-21446576 | None:intergenic | 45.0% | |
| TCCCGCAAAGAGGATTGTTT+GGG | + | chr4.1:21446771-21446790 | None:intergenic | 45.0% | |
| TCTCGAATGCTGAAGGATCT+AGG | - | chr4.1:21446521-21446540 | MS.gene26348:CDS | 45.0% | |
| ! | AAAGATGCTACTTCTTCCGG+TGG | - | chr4.1:21444531-21444550 | MS.gene26348:CDS | 45.0% |
| ! | AGTAATAGAGTGCGAGTTGG+TGG | - | chr4.1:21446455-21446474 | MS.gene26348:CDS | 45.0% |
| ! | CCCACATAATTTGGAACCGA+AGG | - | chr4.1:21444935-21444954 | MS.gene26348:CDS | 45.0% |
| ! | CTTGGAGAAGCATGTCTACA+TGG | + | chr4.1:21445684-21445703 | None:intergenic | 45.0% |
| ! | TACTAGGAAGCATGTGGTCT+AGG | + | chr4.1:21446439-21446458 | None:intergenic | 45.0% |
| ! | TCTGTCAGCTTTGGTTGAGA+AGG | - | chr4.1:21446394-21446413 | MS.gene26348:intron | 45.0% |
| !! | AATAACCACATGGGTTAGGC+TGG | + | chr4.1:21445010-21445029 | None:intergenic | 45.0% |
| !! | ATCAAGGTTGGTGGTCATGA+AGG | + | chr4.1:21446264-21446283 | None:intergenic | 45.0% |
| !! | TCAAGGTTGGTGGTCATGAA+GGG | + | chr4.1:21446263-21446282 | None:intergenic | 45.0% |
| CGATGATGCTGAGCACAACT+TGG | + | chr4.1:21444404-21444423 | None:intergenic | 50.0% | |
| GGTGTAGGGATCGTGAAGTA+TGG | + | chr4.1:21444986-21445005 | None:intergenic | 50.0% | |
| GTAGTGCATGTGGGTGATAG+CGG | - | chr4.1:21445208-21445227 | MS.gene26348:intron | 50.0% | |
| GTCCCGCAAAGAGGATTGTT+TGG | + | chr4.1:21446772-21446791 | None:intergenic | 50.0% | |
| GTGGCCATGTGTATTCCATC+TGG | - | chr4.1:21446692-21446711 | MS.gene26348:CDS | 50.0% | |
| TAGTGCATGTGGGTGATAGC+GGG | - | chr4.1:21445209-21445228 | MS.gene26348:intron | 50.0% | |
| TCTGAATGGCAGCTCAGTCA+AGG | - | chr4.1:21446235-21446254 | MS.gene26348:intron | 50.0% | |
| TGACTGAGCTGCCATTCAGA+AGG | + | chr4.1:21446235-21446254 | None:intergenic | 50.0% | |
| ! | AAGTTGTCGACTGACCCTTG+AGG | + | chr4.1:21446122-21446141 | None:intergenic | 50.0% |
| ! | GTCAGCTTTGGTTGAGAAGG+TGG | - | chr4.1:21446397-21446416 | MS.gene26348:intron | 50.0% |
| AAACACCGTCGACGAAGGAG+AGG | + | chr4.1:21444563-21444582 | None:intergenic | 55.0% | |
| TCTCCTTCGTCGACGGTGTT+TGG | - | chr4.1:21444562-21444581 | MS.gene26348:CDS | 55.0% | |
| TGAGCACTTGTCCCGCAAAG+AGG | + | chr4.1:21446781-21446800 | None:intergenic | 55.0% | |
| ! | TGGGTTAGGCTGGTGGTGTA+GGG | + | chr4.1:21445000-21445019 | None:intergenic | 55.0% |
| !! | AACCACATGGGTTAGGCTGG+TGG | + | chr4.1:21445007-21445026 | None:intergenic | 55.0% |
| !! | ATCATCGCTGCTGGCTCTGA+GGG | - | chr4.1:21444417-21444436 | MS.gene26348:CDS | 55.0% |
| !! | ATGGGTTAGCCTCGTGGTGT+TGG | + | chr4.1:21445048-21445067 | None:intergenic | 55.0% |
| !! | ATGGGTTAGGCTGGTGGTGT+AGG | + | chr4.1:21445001-21445020 | None:intergenic | 55.0% |
| !! | GTAGAGATGGGTTAGCCTCG+TGG | + | chr4.1:21445054-21445073 | None:intergenic | 55.0% |
| ACTGTAGCTGCTGCAGCCAG+TGG | - | chr4.1:21446662-21446681 | MS.gene26348:CDS | 60.0% | |
| CACCACCAGCCTAACCCATG+TGG | - | chr4.1:21445002-21445021 | MS.gene26348:CDS | 60.0% | |
| CAGCCAAACACCGTCGACGA+AGG | + | chr4.1:21444568-21444587 | None:intergenic | 60.0% | |
| CATGGCCACAAGTGCACCAC+TGG | + | chr4.1:21446681-21446700 | None:intergenic | 60.0% | |
| CCTCACCTCTCCTTCGTCGA+CGG | - | chr4.1:21444555-21444574 | MS.gene26348:CDS | 60.0% | |
| CTTCGTCGACGGTGTTTGGC+TGG | - | chr4.1:21444566-21444585 | MS.gene26348:CDS | 60.0% | |
| GAAGGAGAGGTGAGGACCAC+CGG | + | chr4.1:21444550-21444569 | None:intergenic | 60.0% | |
| GTGCTCAGCATCATCGCTGC+TGG | - | chr4.1:21444408-21444427 | MS.gene26348:CDS | 60.0% | |
| TGCAGCCAGTGGTGCACTTG+TGG | - | chr4.1:21446673-21446692 | MS.gene26348:CDS | 60.0% | |
| !! | CATCATCGCTGCTGGCTCTG+AGG | - | chr4.1:21444416-21444435 | MS.gene26348:CDS | 60.0% |
| CCGTCGACGAAGGAGAGGTG+AGG | + | chr4.1:21444558-21444577 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 21444285 | 21446817 | 21444285 | ID=MS.gene26348 |
| chr4.1 | mRNA | 21444285 | 21446817 | 21444285 | ID=MS.gene26348.t1;Parent=MS.gene26348 |
| chr4.1 | exon | 21446425 | 21446817 | 21446425 | ID=MS.gene26348.t1.exon1;Parent=MS.gene26348.t1 |
| chr4.1 | CDS | 21446425 | 21446817 | 21446425 | ID=cds.MS.gene26348.t1;Parent=MS.gene26348.t1 |
| chr4.1 | exon | 21444285 | 21445055 | 21444285 | ID=MS.gene26348.t1.exon2;Parent=MS.gene26348.t1 |
| chr4.1 | CDS | 21444285 | 21445055 | 21444285 | ID=cds.MS.gene26348.t1;Parent=MS.gene26348.t1 |
| Gene Sequence |
| Protein sequence |
