Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26349.t1 | XP_024636466.1 | 91.9 | 372 | 30 | 0 | 15 | 386 | 13 | 384 | 1.70E-190 | 675.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26349.t1 | Q9S7T8 | 50.8 | 386 | 183 | 4 | 7 | 385 | 5 | 390 | 6.6e-106 | 385.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26349.t1 | A0A072UMV3 | 91.7 | 361 | 30 | 0 | 26 | 386 | 8 | 368 | 1.0e-184 | 655.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene26349 | PPI |
| MS.gene006610 | MS.gene26349 | PPI |
| MS.gene26349 | MS.gene045585 | PPI |
| MS.gene031697 | MS.gene26349 | PPI |
| MS.gene26349 | MS.gene065944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26349.t1 | MTR_4g088525 | 91.690 | 361 | 30 | 0 | 26 | 386 | 8 | 368 | 0.0 | 677 |
| MS.gene26349.t1 | MTR_8g027395 | 74.219 | 384 | 99 | 0 | 3 | 386 | 13 | 396 | 0.0 | 581 |
| MS.gene26349.t1 | MTR_8g027420 | 73.958 | 384 | 89 | 1 | 3 | 386 | 2 | 374 | 0.0 | 565 |
| MS.gene26349.t1 | MTR_4g088535 | 75.131 | 382 | 79 | 2 | 1 | 382 | 1 | 366 | 0.0 | 547 |
| MS.gene26349.t1 | MTR_3g101010 | 69.271 | 384 | 114 | 1 | 7 | 386 | 5 | 388 | 0.0 | 512 |
| MS.gene26349.t1 | MTR_3g018740 | 68.848 | 382 | 116 | 2 | 7 | 385 | 5 | 386 | 0.0 | 509 |
| MS.gene26349.t1 | MTR_4g045707 | 67.539 | 382 | 122 | 2 | 7 | 386 | 6 | 387 | 2.41e-179 | 504 |
| MS.gene26349.t1 | MTR_3g101030 | 64.736 | 397 | 116 | 6 | 12 | 386 | 34 | 428 | 6.19e-170 | 481 |
| MS.gene26349.t1 | MTR_3g101180 | 63.452 | 394 | 130 | 4 | 7 | 386 | 6 | 399 | 2.57e-165 | 469 |
| MS.gene26349.t1 | MTR_8g461160 | 63.049 | 387 | 135 | 2 | 7 | 385 | 6 | 392 | 3.93e-165 | 468 |
| MS.gene26349.t1 | MTR_3g048000 | 62.016 | 387 | 126 | 4 | 4 | 386 | 22 | 391 | 3.61e-163 | 463 |
| MS.gene26349.t1 | MTR_3g101130 | 61.954 | 389 | 137 | 4 | 5 | 386 | 4 | 388 | 1.05e-161 | 459 |
| MS.gene26349.t1 | MTR_2g045980 | 62.660 | 391 | 135 | 4 | 1 | 385 | 1 | 386 | 3.09e-161 | 458 |
| MS.gene26349.t1 | MTR_2g046030 | 62.148 | 391 | 137 | 4 | 1 | 385 | 1 | 386 | 2.21e-160 | 456 |
| MS.gene26349.t1 | MTR_7g050810 | 60.207 | 387 | 146 | 2 | 7 | 385 | 16 | 402 | 1.09e-159 | 454 |
| MS.gene26349.t1 | MTR_7g451890 | 58.656 | 387 | 152 | 2 | 7 | 385 | 14 | 400 | 2.75e-158 | 451 |
| MS.gene26349.t1 | MTR_7g047780 | 58.140 | 387 | 154 | 2 | 7 | 385 | 14 | 400 | 4.45e-156 | 445 |
| MS.gene26349.t1 | MTR_7g050750 | 58.140 | 387 | 154 | 2 | 7 | 385 | 8 | 394 | 2.19e-155 | 443 |
| MS.gene26349.t1 | MTR_3g101050 | 60.052 | 383 | 128 | 6 | 11 | 386 | 33 | 397 | 1.49e-146 | 421 |
| MS.gene26349.t1 | MTR_3g015620 | 58.398 | 387 | 129 | 5 | 7 | 385 | 16 | 378 | 2.40e-146 | 420 |
| MS.gene26349.t1 | MTR_3g102920 | 56.693 | 381 | 121 | 6 | 14 | 386 | 65 | 409 | 1.10e-131 | 384 |
| MS.gene26349.t1 | MTR_3g101200 | 54.145 | 386 | 144 | 5 | 7 | 385 | 31 | 390 | 2.87e-126 | 369 |
| MS.gene26349.t1 | MTR_3g101190 | 53.889 | 360 | 103 | 3 | 29 | 386 | 13 | 311 | 1.28e-118 | 347 |
| MS.gene26349.t1 | MTR_3g100995 | 65.354 | 254 | 83 | 2 | 135 | 385 | 11 | 262 | 4.13e-115 | 336 |
| MS.gene26349.t1 | MTR_3g100010 | 55.769 | 312 | 90 | 3 | 30 | 308 | 40 | 336 | 1.07e-109 | 325 |
| MS.gene26349.t1 | MTR_3g018747 | 65.251 | 259 | 72 | 3 | 131 | 385 | 9 | 253 | 2.46e-107 | 316 |
| MS.gene26349.t1 | MTR_7g050830 | 53.571 | 308 | 110 | 3 | 13 | 298 | 22 | 318 | 8.95e-103 | 307 |
| MS.gene26349.t1 | MTR_3g015760 | 57.762 | 277 | 105 | 4 | 116 | 385 | 8 | 279 | 4.26e-99 | 296 |
| MS.gene26349.t1 | MTR_3g114310 | 41.860 | 387 | 208 | 10 | 12 | 384 | 24 | 407 | 1.18e-85 | 266 |
| MS.gene26349.t1 | MTR_3g100520 | 63.889 | 216 | 67 | 4 | 172 | 385 | 1 | 207 | 2.10e-85 | 258 |
| MS.gene26349.t1 | MTR_3g111160 | 68.473 | 203 | 61 | 2 | 187 | 386 | 17 | 219 | 2.34e-85 | 258 |
| MS.gene26349.t1 | MTR_3g101110 | 56.904 | 239 | 69 | 3 | 131 | 361 | 68 | 280 | 9.28e-82 | 252 |
| MS.gene26349.t1 | MTR_2g046410 | 61.574 | 216 | 74 | 3 | 176 | 385 | 135 | 347 | 2.64e-78 | 245 |
| MS.gene26349.t1 | MTR_3g099970 | 62.755 | 196 | 56 | 2 | 131 | 326 | 20 | 198 | 3.79e-77 | 237 |
| MS.gene26349.t1 | MTR_3g102870 | 68.944 | 161 | 50 | 0 | 194 | 354 | 1 | 161 | 5.63e-70 | 218 |
| MS.gene26349.t1 | MTR_3g101150 | 65.605 | 157 | 46 | 1 | 237 | 385 | 1 | 157 | 2.88e-63 | 200 |
| MS.gene26349.t1 | MTR_3g101020 | 55.435 | 184 | 53 | 2 | 205 | 385 | 1 | 158 | 3.90e-61 | 194 |
| MS.gene26349.t1 | MTR_3g111150 | 58.140 | 172 | 48 | 2 | 11 | 182 | 3 | 150 | 1.54e-59 | 191 |
| MS.gene26349.t1 | MTR_3g100990 | 67.717 | 127 | 41 | 0 | 5 | 131 | 3 | 129 | 1.47e-49 | 174 |
| MS.gene26349.t1 | MTR_4g093550 | 66.667 | 84 | 28 | 0 | 7 | 90 | 6 | 89 | 8.47e-30 | 110 |
| MS.gene26349.t1 | MTR_6g046890 | 63.014 | 73 | 27 | 0 | 15 | 87 | 7 | 79 | 6.73e-20 | 85.5 |
| MS.gene26349.t1 | MTR_3g101140 | 55.224 | 67 | 25 | 2 | 324 | 385 | 48 | 114 | 2.30e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26349.t1 | AT1G47710 | 50.777 | 386 | 183 | 4 | 7 | 385 | 5 | 390 | 1.45e-136 | 395 |
| MS.gene26349.t1 | AT1G47710 | 50.777 | 386 | 183 | 4 | 7 | 385 | 32 | 417 | 6.12e-136 | 395 |
| MS.gene26349.t1 | AT3G45220 | 46.615 | 384 | 193 | 4 | 11 | 384 | 9 | 390 | 1.97e-121 | 357 |
| MS.gene26349.t1 | AT2G25240 | 48.684 | 380 | 183 | 7 | 11 | 384 | 9 | 382 | 1.54e-119 | 352 |
| MS.gene26349.t1 | AT2G26390 | 45.736 | 387 | 188 | 9 | 11 | 384 | 9 | 386 | 1.16e-108 | 324 |
| MS.gene26349.t1 | AT1G62170 | 42.975 | 363 | 176 | 4 | 31 | 384 | 91 | 431 | 6.96e-96 | 293 |
| MS.gene26349.t1 | AT2G14540 | 44.186 | 387 | 185 | 6 | 7 | 384 | 33 | 397 | 1.24e-95 | 291 |
| MS.gene26349.t1 | AT1G64030 | 39.687 | 383 | 210 | 5 | 7 | 384 | 5 | 371 | 1.39e-90 | 278 |
| MS.gene26349.t1 | AT1G62170 | 39.394 | 396 | 176 | 5 | 31 | 384 | 91 | 464 | 8.74e-89 | 276 |
| MS.gene26349.t1 | AT2G35580 | 40.669 | 359 | 184 | 7 | 35 | 384 | 33 | 371 | 2.44e-82 | 256 |
| MS.gene26349.t1 | AT1G64010 | 44.444 | 216 | 96 | 4 | 172 | 384 | 1 | 195 | 8.38e-57 | 184 |
| MS.gene26349.t1 | AT1G64010 | 43.564 | 202 | 90 | 4 | 186 | 384 | 1 | 181 | 3.07e-50 | 167 |
| MS.gene26349.t1 | AT1G62160 | 37.755 | 196 | 98 | 5 | 194 | 384 | 42 | 218 | 1.82e-31 | 119 |
| MS.gene26349.t1 | AT1G63280 | 52.174 | 115 | 51 | 2 | 131 | 243 | 8 | 120 | 6.13e-31 | 114 |
| MS.gene26349.t1 | AT1G51330 | 52.632 | 95 | 45 | 0 | 130 | 224 | 30 | 124 | 5.71e-25 | 101 |
Find 62 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 4.1:-21452111 | MS.gene26349:CDS |
| CTAGATGAAAATTTGAATCT+TGG | 0.311615 | 4.1:+21451680 | None:intergenic |
| CTACTTCTCATACCTTGTTC+TGG | 0.331685 | 4.1:+21452860 | None:intergenic |
| ACCCAAACAATCCTCTTTGC+CGG | 0.332257 | 4.1:-21451401 | MS.gene26349:CDS |
| GTCCGGCAAAGAGGATTGTT+TGG | 0.343638 | 4.1:+21451399 | None:intergenic |
| AATAAATTGATTAAAGTTGC+TGG | 0.347376 | 4.1:+21451898 | None:intergenic |
| GATGATCGGTAGATTTGAAT+TGG | 0.347471 | 4.1:+21453058 | None:intergenic |
| TGAAGGAAGGTTGAGGAGAA+AGG | 0.364807 | 4.1:+21452932 | None:intergenic |
| TCCGGCAAAGAGGATTGTTT+GGG | 0.390129 | 4.1:+21451400 | None:intergenic |
| CGATGATTGCAAGCACTACT+TGG | 0.408491 | 4.1:+21453127 | None:intergenic |
| TATAAGGAAGCTTGTGCTCT+AGG | 0.415442 | 4.1:+21451732 | None:intergenic |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.417147 | 4.1:-21451797 | MS.gene26349:CDS |
| GAAGGAAGGTTGAGGAGAAA+GGG | 0.432354 | 4.1:+21452933 | None:intergenic |
| TTTACCATGGGTAGATCAAC+CGG | 0.448059 | 4.1:-21451476 | MS.gene26349:CDS |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 4.1:-21452110 | MS.gene26349:CDS |
| AGACAAAGTGGCCTTGTAAT+CGG | 0.455993 | 4.1:+21452894 | None:intergenic |
| GTCAGCTTTGGTTGAGAAGG+TGG | 0.459796 | 4.1:-21451771 | MS.gene26349:CDS |
| ATCATCGCTGCTGGCTCTGA+CGG | 0.466572 | 4.1:-21453111 | MS.gene26349:CDS |
| TTACTGAGCTTCCATTAAGA+AGG | 0.468069 | 4.1:+21451936 | None:intergenic |
| TTTATTGAAGTAAACGAGAA+AGG | 0.470403 | 4.1:-21451530 | MS.gene26349:CDS |
| ATTAAAGTTGCTGGTCATGA+AGG | 0.473995 | 4.1:+21451907 | None:intergenic |
| AAGAGGGTTTAGCACTTGTC+CGG | 0.477706 | 4.1:+21451382 | None:intergenic |
| AAAATGGTGGACTCTCTTGA+AGG | 0.485242 | 4.1:-21451590 | MS.gene26349:CDS |
| AAAAGATGGTCTGTCAGCTT+TGG | 0.500468 | 4.1:-21451783 | MS.gene26349:CDS |
| CATGGTAAAATATGCAGTAC+TGG | 0.501847 | 4.1:+21451490 | None:intergenic |
| CTTCGTCTTCCTTATAAGCA+AGG | 0.506335 | 4.1:-21451851 | MS.gene26349:CDS |
| ATCAGCTATAAAGTCTAGTC+CGG | 0.515418 | 4.1:+21451457 | None:intergenic |
| GTGCTTGCAATCATCGCTGC+TGG | 0.516685 | 4.1:-21453120 | MS.gene26349:CDS |
| AGAAAGGTAAAATCACTCCT+AGG | 0.522055 | 4.1:+21451630 | None:intergenic |
| GTTAAGATCACTCAGCAAAG+AGG | 0.525451 | 4.1:+21451365 | None:intergenic |
| TTCTGTTGATTTCCAGAACA+AGG | 0.528215 | 4.1:-21452872 | MS.gene26349:intron |
| TCTTAATGGAAGCTCAGTAA+AGG | 0.530556 | 4.1:-21451933 | MS.gene26349:CDS |
| TGCATTAGCAAAGATGAGTC+GGG | 0.539519 | 4.1:+21452024 | None:intergenic |
| TATCGTGTCTACCGATTACA+AGG | 0.540227 | 4.1:-21452905 | MS.gene26349:CDS |
| GATCGGTAGATTTGAATTGG+AGG | 0.550519 | 4.1:+21453061 | None:intergenic |
| GTGCATTAGCAAAGATGAGT+CGG | 0.551044 | 4.1:+21452023 | None:intergenic |
| GACGAAGGAGTTGAGATGAT+CGG | 0.552315 | 4.1:+21453044 | None:intergenic |
| TATAAAACAGTGCGAGTAGG+AGG | 0.555196 | 4.1:-21451713 | MS.gene26349:CDS |
| GGTAGACACGATATGTTTGA+AGG | 0.558443 | 4.1:+21452915 | None:intergenic |
| TTAAGATCACTCAGCAAAGA+GGG | 0.559364 | 4.1:+21451366 | None:intergenic |
| ATATGTTTGAAGGAAGGTTG+AGG | 0.570373 | 4.1:+21452925 | None:intergenic |
| GACACGATATGTTTGAAGGA+AGG | 0.570621 | 4.1:+21452919 | None:intergenic |
| TGAGAAAAGATGTTTGGCTA+TGG | 0.572303 | 4.1:+21453191 | None:intergenic |
| TCTGTCAGCTTTGGTTGAGA+AGG | 0.577265 | 4.1:-21451774 | MS.gene26349:CDS |
| AAGATGTTTGGCTATGGTGA+GGG | 0.583307 | 4.1:+21453197 | None:intergenic |
| TTAAAGTTGCTGGTCATGAA+GGG | 0.586835 | 4.1:+21451908 | None:intergenic |
| CTTCTGAAATATGTTGCTAA+CGG | 0.590462 | 4.1:+21451556 | None:intergenic |
| TGGTGAGGGAAACTTTCGTA+TGG | 0.600494 | 4.1:+21453211 | None:intergenic |
| GAAAGGCACTAAAGCTGTTG+CGG | 0.603147 | 4.1:-21451513 | MS.gene26349:CDS |
| TCTCATATGCTGAAAGACCT+AGG | 0.603910 | 4.1:-21451647 | MS.gene26349:CDS |
| AAAGATGTTTGGCTATGGTG+AGG | 0.605145 | 4.1:+21453196 | None:intergenic |
| AAAGACGCTATTCCTTCTCG+TGG | 0.619592 | 4.1:-21452997 | MS.gene26349:CDS |
| TTAGCACTTGTCCGGCAAAG+AGG | 0.620381 | 4.1:+21451390 | None:intergenic |
| CCTTATAAAACAGTGCGAGT+AGG | 0.620740 | 4.1:-21451716 | MS.gene26349:CDS |
| AAGAGGTGAGGACCACGAGA+AGG | 0.620995 | 4.1:+21452985 | None:intergenic |
| GAAATCAACAGAAGACAAAG+TGG | 0.639195 | 4.1:+21452882 | None:intergenic |
| GGAAATGAGTTGAGAGACGA+AGG | 0.639293 | 4.1:+21453029 | None:intergenic |
| GTCGAGAAACTGTTGTTGTG+TGG | 0.639846 | 4.1:+21453086 | None:intergenic |
| AATAGCGTCTTTGAAGATGA+CGG | 0.643915 | 4.1:+21453008 | None:intergenic |
| AGCACTACTTGGAGAGACAA+AGG | 0.653123 | 4.1:+21453138 | None:intergenic |
| TAGTCCGGTTGATCTACCCA+TGG | 0.686736 | 4.1:+21451472 | None:intergenic |
| ATAAGCAAGGAAAAGATGAG+CGG | 0.694027 | 4.1:-21451838 | MS.gene26349:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTGTCATATATTT+AGG | + | chr4.1:21452654-21452673 | None:intergenic | 10.0% |
| !! | CTCTAATTAAAAATAAGAAA+GGG | + | chr4.1:21453190-21453209 | None:intergenic | 15.0% |
| !! | TCTCTAATTAAAAATAAGAA+AGG | + | chr4.1:21453191-21453210 | None:intergenic | 15.0% |
| !! | AATAAATTGATTAAAGTTGC+TGG | + | chr4.1:21452724-21452743 | None:intergenic | 20.0% |
| !! | ATATGTAAATTTGATTGACA+TGG | - | chr4.1:21452467-21452486 | MS.gene26349:intron | 20.0% |
| !! | ATTAAAAAAATTGTTGCTCA+AGG | - | chr4.1:21452555-21452574 | MS.gene26349:intron | 20.0% |
| !! | TTAAAAAAATTGTTGCTCAA+GGG | - | chr4.1:21452556-21452575 | MS.gene26349:intron | 20.0% |
| !!! | AATCTAATTTTCACACATTA+CGG | + | chr4.1:21452379-21452398 | None:intergenic | 20.0% |
| !!! | CAATTTATTAGAGTTTTTGA+TGG | - | chr4.1:21452735-21452754 | MS.gene26349:intron | 20.0% |
| !!! | GAGCAACAATTTTTTTAATA+AGG | + | chr4.1:21452554-21452573 | None:intergenic | 20.0% |
| ! | CTAGATGAAAATTTGAATCT+TGG | + | chr4.1:21452942-21452961 | None:intergenic | 25.0% |
| ! | CTTCATGAATAACATTCAAA+AGG | - | chr4.1:21452090-21452109 | MS.gene26349:CDS | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | - | chr4.1:21452509-21452528 | MS.gene26349:intron | 25.0% |
| ! | TATAAACGGTGTTTGATTAA+TGG | - | chr4.1:21451939-21451958 | MS.gene26349:CDS | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | - | chr4.1:21452508-21452527 | MS.gene26349:intron | 25.0% |
| ! | TTAATCTTTACATTTCATCC+TGG | - | chr4.1:21452035-21452054 | MS.gene26349:CDS | 25.0% |
| ! | TTGAATGTTATTCATGAAGA+AGG | + | chr4.1:21452089-21452108 | None:intergenic | 25.0% |
| ! | TTTATTGAAGTAAACGAGAA+AGG | - | chr4.1:21453089-21453108 | MS.gene26349:CDS | 25.0% |
| ! | TTTGATTAATGGCTATAATG+TGG | - | chr4.1:21451950-21451969 | MS.gene26349:CDS | 25.0% |
| !! | TATGATTTTCACCTTCTTAA+TGG | - | chr4.1:21452672-21452691 | MS.gene26349:intron | 25.0% |
| !!! | GCTAATGCACTATATTTTAA+AGG | - | chr4.1:21452609-21452628 | MS.gene26349:intron | 25.0% |
| !!! | TTCTTTTGAGAAAAGATGTT+TGG | + | chr4.1:21451437-21451456 | None:intergenic | 25.0% |
| ACACACTATTGACAAAAAAG+AGG | + | chr4.1:21451654-21451673 | None:intergenic | 30.0% | |
| GGATATGATAGAAAACAACA+AGG | + | chr4.1:21452343-21452362 | None:intergenic | 30.0% | |
| TCTTGCACTTGCTTTATAAA+CGG | - | chr4.1:21451925-21451944 | MS.gene26349:CDS | 30.0% | |
| TGTGTTTATCTTGAAGTGAA+AGG | - | chr4.1:21452199-21452218 | MS.gene26349:intron | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | - | chr4.1:21452822-21452841 | MS.gene26349:intron | 30.0% | |
| ! | AGTACTGCATATTTTACCAT+GGG | - | chr4.1:21453131-21453150 | MS.gene26349:CDS | 30.0% |
| ! | CAAAATCCTACCAATTCTTT+TGG | + | chr4.1:21452167-21452186 | None:intergenic | 30.0% |
| ! | TAACATTCAAAAGGCATGAA+TGG | - | chr4.1:21452099-21452118 | MS.gene26349:CDS | 30.0% |
| ! | TCATCTTTTCCTTGCTTATA+AGG | + | chr4.1:21452780-21452799 | None:intergenic | 30.0% |
| ! | TGATTTTACCTTTCTCTTCT+GGG | - | chr4.1:21452997-21453016 | MS.gene26349:CDS | 30.0% |
| ! | TGGCTATAATGTGGTTTTTA+TGG | - | chr4.1:21451959-21451978 | MS.gene26349:CDS | 30.0% |
| ! | TTTTCCTTCTCCAAAAGAAT+TGG | - | chr4.1:21452154-21452173 | MS.gene26349:intron | 30.0% |
| !! | CACTATATTTTAAAGGAGCA+TGG | - | chr4.1:21452616-21452635 | MS.gene26349:intron | 30.0% |
| !! | CTTCTGAAATATGTTGCTAA+CGG | + | chr4.1:21453066-21453085 | None:intergenic | 30.0% |
| !! | TTGTTATTTCACACTTAGTC+CGG | - | chr4.1:21451995-21452014 | MS.gene26349:CDS | 30.0% |
| !!! | TCTTTTTTGTCAATAGTGTG+TGG | - | chr4.1:21451653-21451672 | MS.gene26349:CDS | 30.0% |
| !!! | TTTGATTGACATGGTTTTGA+AGG | - | chr4.1:21452476-21452495 | MS.gene26349:intron | 30.0% |
| AAATCAAGAAGCTTATGAGC+CGG | + | chr4.1:21452017-21452036 | None:intergenic | 35.0% | |
| AGAAAGGTAAAATCACTCCT+AGG | + | chr4.1:21452992-21453011 | None:intergenic | 35.0% | |
| ATAAGCAAGGAAAAGATGAG+CGG | - | chr4.1:21452781-21452800 | MS.gene26349:intron | 35.0% | |
| ATATGTTTGAAGGAAGGTTG+AGG | + | chr4.1:21451697-21451716 | None:intergenic | 35.0% | |
| ATCAGCTATAAAGTCTAGTC+CGG | + | chr4.1:21453165-21453184 | None:intergenic | 35.0% | |
| ATCCTGGCATACAATAAAGT+AGG | - | chr4.1:21452051-21452070 | MS.gene26349:CDS | 35.0% | |
| ATTAAAGTTGCTGGTCATGA+AGG | + | chr4.1:21452715-21452734 | None:intergenic | 35.0% | |
| CATGGTAAAATATGCAGTAC+TGG | + | chr4.1:21453132-21453151 | None:intergenic | 35.0% | |
| CTATTGACAAAAAAGAGGTG+AGG | + | chr4.1:21451649-21451668 | None:intergenic | 35.0% | |
| GAAATCAACAGAAGACAAAG+TGG | + | chr4.1:21451740-21451759 | None:intergenic | 35.0% | |
| GATGATCGGTAGATTTGAAT+TGG | + | chr4.1:21451564-21451583 | None:intergenic | 35.0% | |
| TCCTGGCATACAATAAAGTA+GGG | - | chr4.1:21452052-21452071 | MS.gene26349:CDS | 35.0% | |
| TCTTAATGGAAGCTCAGTAA+AGG | - | chr4.1:21452686-21452705 | MS.gene26349:intron | 35.0% | |
| TGAGAAAAGATGTTTGGCTA+TGG | + | chr4.1:21451431-21451450 | None:intergenic | 35.0% | |
| TTAAAGTTGCTGGTCATGAA+GGG | + | chr4.1:21452714-21452733 | None:intergenic | 35.0% | |
| TTACTGAGCTTCCATTAAGA+AGG | + | chr4.1:21452686-21452705 | None:intergenic | 35.0% | |
| ! | AATAGCGTCTTTGAAGATGA+CGG | + | chr4.1:21451614-21451633 | None:intergenic | 35.0% |
| ! | ATTTTACCTTTCTCTTCTGG+GGG | - | chr4.1:21452999-21453018 | MS.gene26349:CDS | 35.0% |
| ! | CAGTACTGCATATTTTACCA+TGG | - | chr4.1:21453130-21453149 | MS.gene26349:CDS | 35.0% |
| ! | CATTACGGTGCTAAATTAGT+TGG | + | chr4.1:21452364-21452383 | None:intergenic | 35.0% |
| ! | GATTTTACCTTTCTCTTCTG+GGG | - | chr4.1:21452998-21453017 | MS.gene26349:CDS | 35.0% |
| ! | GTGATTTTACCTTTCTCTTC+TGG | - | chr4.1:21452996-21453015 | MS.gene26349:CDS | 35.0% |
| !! | TTCTGTTGATTTCCAGAACA+AGG | - | chr4.1:21451747-21451766 | MS.gene26349:CDS | 35.0% |
| AAAAGATGGTCTGTCAGCTT+TGG | - | chr4.1:21452836-21452855 | MS.gene26349:intron | 40.0% | |
| AAAGATGTTTGGCTATGGTG+AGG | + | chr4.1:21451426-21451445 | None:intergenic | 40.0% | |
| AAGATGTTTGGCTATGGTGA+GGG | + | chr4.1:21451425-21451444 | None:intergenic | 40.0% | |
| ACCCTACTTTATTGTATGCC+AGG | + | chr4.1:21452056-21452075 | None:intergenic | 40.0% | |
| CCTTATAAAACAGTGCGAGT+AGG | - | chr4.1:21452903-21452922 | MS.gene26349:CDS | 40.0% | |
| CCTTCTCCAAAAGAATTGGT+AGG | - | chr4.1:21452158-21452177 | MS.gene26349:intron | 40.0% | |
| CTACTTCTCATACCTTGTTC+TGG | + | chr4.1:21451762-21451781 | None:intergenic | 40.0% | |
| CTTCGTCTTCCTTATAAGCA+AGG | - | chr4.1:21452768-21452787 | MS.gene26349:intron | 40.0% | |
| GACACGATATGTTTGAAGGA+AGG | + | chr4.1:21451703-21451722 | None:intergenic | 40.0% | |
| GATCGGTAGATTTGAATTGG+AGG | + | chr4.1:21451561-21451580 | None:intergenic | 40.0% | |
| GGTAGACACGATATGTTTGA+AGG | + | chr4.1:21451707-21451726 | None:intergenic | 40.0% | |
| GTGCATTAGCAAAGATGAGT+CGG | + | chr4.1:21452599-21452618 | None:intergenic | 40.0% | |
| TATAAAACAGTGCGAGTAGG+AGG | - | chr4.1:21452906-21452925 | MS.gene26349:CDS | 40.0% | |
| TATAAGGAAGCTTGTGCTCT+AGG | + | chr4.1:21452890-21452909 | None:intergenic | 40.0% | |
| TCTCATATGCTGAAAGACCT+AGG | - | chr4.1:21452972-21452991 | MS.gene26349:CDS | 40.0% | |
| TGCATTAGCAAAGATGAGTC+GGG | + | chr4.1:21452598-21452617 | None:intergenic | 40.0% | |
| TGGGCTAAAAAAGAGACGAA+TGG | - | chr4.1:21452528-21452547 | MS.gene26349:intron | 40.0% | |
| TTTACCATGGGTAGATCAAC+CGG | - | chr4.1:21453143-21453162 | MS.gene26349:CDS | 40.0% | |
| ! | CCTACTCGCACTGTTTTATA+AGG | + | chr4.1:21452906-21452925 | None:intergenic | 40.0% |
| ! | GACAGACCATCTTTTGCATT+TGG | + | chr4.1:21452831-21452850 | None:intergenic | 40.0% |
| ! | TATCGTGTCTACCGATTACA+AGG | - | chr4.1:21451714-21451733 | MS.gene26349:CDS | 40.0% |
| ! | TTCTGGGGGTTTGACAAAAA+TGG | - | chr4.1:21453013-21453032 | MS.gene26349:CDS | 40.0% |
| ! | TTTTGTCAATAGTGTGTGGC+TGG | - | chr4.1:21451657-21451676 | MS.gene26349:CDS | 40.0% |
| !! | AAAATGGTGGACTCTCTTGA+AGG | - | chr4.1:21453029-21453048 | MS.gene26349:CDS | 40.0% |
| !! | AGACAAAGTGGCCTTGTAAT+CGG | + | chr4.1:21451728-21451747 | None:intergenic | 40.0% |
| !! | CCTACCAATTCTTTTGGAGA+AGG | + | chr4.1:21452161-21452180 | None:intergenic | 40.0% |
| AAAGACGCTATTCCTTCTCG+TGG | - | chr4.1:21451622-21451641 | MS.gene26349:CDS | 45.0% | |
| AAGAGGGTTTAGCACTTGTC+CGG | + | chr4.1:21453240-21453259 | None:intergenic | 45.0% | |
| ACCCAAACAATCCTCTTTGC+CGG | - | chr4.1:21453218-21453237 | MS.gene26349:CDS | 45.0% | |
| AGCACTACTTGGAGAGACAA+AGG | + | chr4.1:21451484-21451503 | None:intergenic | 45.0% | |
| CGATGATTGCAAGCACTACT+TGG | + | chr4.1:21451495-21451514 | None:intergenic | 45.0% | |
| GAAGGAAGGTTGAGGAGAAA+GGG | + | chr4.1:21451689-21451708 | None:intergenic | 45.0% | |
| GACGAAGGAGTTGAGATGAT+CGG | + | chr4.1:21451578-21451597 | None:intergenic | 45.0% | |
| GTCGAGAAACTGTTGTTGTG+TGG | + | chr4.1:21451536-21451555 | None:intergenic | 45.0% | |
| TCCGGCAAAGAGGATTGTTT+GGG | + | chr4.1:21453222-21453241 | None:intergenic | 45.0% | |
| TGAAGGAAGGTTGAGGAGAA+AGG | + | chr4.1:21451690-21451709 | None:intergenic | 45.0% | |
| TGGGGGTTTGACAAAAATGG+TGG | - | chr4.1:21453016-21453035 | MS.gene26349:CDS | 45.0% | |
| TGGTGAGGGAAACTTTCGTA+TGG | + | chr4.1:21451411-21451430 | None:intergenic | 45.0% | |
| ! | GGAAATGAGTTGAGAGACGA+AGG | + | chr4.1:21451593-21451612 | None:intergenic | 45.0% |
| ! | TCTGTCAGCTTTGGTTGAGA+AGG | - | chr4.1:21452845-21452864 | MS.gene26349:intron | 45.0% |
| !! | GAAAGGCACTAAAGCTGTTG+CGG | - | chr4.1:21453106-21453125 | MS.gene26349:CDS | 45.0% |
| GTCAAACCCCCAGAAGAGAA+AGG | + | chr4.1:21453008-21453027 | None:intergenic | 50.0% | |
| GTCCGGCAAAGAGGATTGTT+TGG | + | chr4.1:21453223-21453242 | None:intergenic | 50.0% | |
| TAGTCCGGTTGATCTACCCA+TGG | + | chr4.1:21453150-21453169 | None:intergenic | 50.0% | |
| TTAGCACTTGTCCGGCAAAG+AGG | + | chr4.1:21453232-21453251 | None:intergenic | 50.0% | |
| ! | GTCAGCTTTGGTTGAGAAGG+TGG | - | chr4.1:21452848-21452867 | MS.gene26349:intron | 50.0% |
| AAGAGGTGAGGACCACGAGA+AGG | + | chr4.1:21451637-21451656 | None:intergenic | 55.0% | |
| GTGCTTGCAATCATCGCTGC+TGG | - | chr4.1:21451499-21451518 | MS.gene26349:CDS | 55.0% | |
| !! | ATCATCGCTGCTGGCTCTGA+CGG | - | chr4.1:21451508-21451527 | MS.gene26349:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 21451376 | 21453265 | 21451376 | ID=MS.gene26349 |
| chr4.1 | mRNA | 21451376 | 21453265 | 21451376 | ID=MS.gene26349.t1;Parent=MS.gene26349 |
| chr4.1 | exon | 21452873 | 21453265 | 21452873 | ID=MS.gene26349.t1.exon1;Parent=MS.gene26349.t1 |
| chr4.1 | CDS | 21452873 | 21453265 | 21452873 | ID=cds.MS.gene26349.t1;Parent=MS.gene26349.t1 |
| chr4.1 | exon | 21451376 | 21452143 | 21451376 | ID=MS.gene26349.t1.exon2;Parent=MS.gene26349.t1 |
| chr4.1 | CDS | 21451376 | 21452143 | 21451376 | ID=cds.MS.gene26349.t1;Parent=MS.gene26349.t1 |
| Gene Sequence |
| Protein sequence |
