Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26490.t1 | XP_013450222.1 | 97.3 | 1288 | 31 | 1 | 1 | 1284 | 1 | 1288 | 0.00E+00 | 2485.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26490.t1 | Q9Y2L5 | 24.3 | 1205 | 707 | 35 | 10 | 1034 | 10 | 1189 | 2.0e-66 | 256.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26490.t1 | A0A072UEM3 | 97.3 | 1288 | 31 | 1 | 1 | 1284 | 1 | 1288 | 0.0e+00 | 2485.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052309 | MS.gene26490 | 0.82875 | 7.56E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26490.t1 | MTR_7g106380 | 97.283 | 1288 | 31 | 1 | 1 | 1284 | 1 | 1288 | 0.0 | 2618 |
| MS.gene26490.t1 | MTR_7g106380 | 97.028 | 942 | 24 | 1 | 347 | 1284 | 1 | 942 | 0.0 | 1907 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26490.t1 | AT5G16280 | 56.096 | 1296 | 530 | 15 | 1 | 1283 | 2 | 1271 | 0.0 | 1467 |
| MS.gene26490.t1 | AT5G16280 | 56.062 | 1295 | 531 | 15 | 1 | 1283 | 2 | 1270 | 0.0 | 1465 |
Find 273 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTACCTGGTTGGGTTTC+AGG | 0.054891 | 7.3:+7794239 | None:intergenic |
| TAATGAGAAATTTAAATTTA+TGG | 0.085345 | 7.3:-7799091 | MS.gene26490:CDS |
| AAAACCAAATAAAGAATTTA+TGG | 0.136150 | 7.3:-7806797 | MS.gene26490:CDS |
| CACCCTAGATTCTTGATTAT+TGG | 0.136962 | 7.3:-7797826 | MS.gene26490:CDS |
| TCCACCATAAATTCTTTATT+TGG | 0.145489 | 7.3:+7806793 | None:intergenic |
| GGATTTCATCTAGTTCTTTC+TGG | 0.157752 | 7.3:-7805282 | MS.gene26490:CDS |
| CAATCAAATGTTTGTGTTAC+TGG | 0.171267 | 7.3:-7801436 | MS.gene26490:CDS |
| TATTGTGGCCTCTTTGGTTT+AGG | 0.182261 | 7.3:-7797565 | MS.gene26490:CDS |
| GGTGGCTTATCTTCATCTTT+AGG | 0.207390 | 7.3:+7797845 | None:intergenic |
| TTGGTTTAGGGCTGCTGTTC+CGG | 0.219189 | 7.3:-7797552 | MS.gene26490:CDS |
| AAGTAATGCTTTAAAATCTT+TGG | 0.221239 | 7.3:+7809018 | None:intergenic |
| TGTCCAGAAACTTGGATTAT+TGG | 0.228221 | 7.3:-7805572 | MS.gene26490:intron |
| CACCCTTATTGTGGCCTCTT+TGG | 0.228740 | 7.3:-7797571 | MS.gene26490:CDS |
| TCTTGTAATCTGTTGAAATT+AGG | 0.237133 | 7.3:+7806527 | None:intergenic |
| TGAATCCCAGATTCGAGTTT+TGG | 0.240853 | 7.3:-7806602 | MS.gene26490:CDS |
| GACGACACAAGAATTATTTC+TGG | 0.241713 | 7.3:-7804863 | MS.gene26490:CDS |
| TTCAAATTGCGTCTCTTCTA+TGG | 0.246197 | 7.3:-7811392 | MS.gene26490:CDS |
| TATGAAGATCACCGAACTTT+TGG | 0.250508 | 7.3:-7804570 | MS.gene26490:CDS |
| AGAAAGCTTGTGGCATTCTT+TGG | 0.255318 | 7.3:-7801542 | MS.gene26490:CDS |
| TGCCACCCTGCTTGGTTATC+AGG | 0.262637 | 7.3:+7794305 | None:intergenic |
| CCCTCCATGTCACGCAAATA+TGG | 0.263222 | 7.3:-7805303 | MS.gene26490:CDS |
| ATTGTGGCCTCTTTGGTTTA+GGG | 0.263491 | 7.3:-7797564 | MS.gene26490:CDS |
| ACCCTAGATTCTTGATTATT+GGG | 0.263780 | 7.3:-7797825 | MS.gene26490:CDS |
| GATCATGTTCATTTCCATAT+TGG | 0.265794 | 7.3:-7805075 | MS.gene26490:CDS |
| TTACTGCTGCCAAGAGTAAT+TGG | 0.274143 | 7.3:-7801498 | MS.gene26490:CDS |
| GTTTATCAGTTGTCTTCTAT+TGG | 0.283153 | 7.3:-7797092 | MS.gene26490:CDS |
| CCAGAGCATACCCAAGATTC+AGG | 0.286143 | 7.3:-7798852 | MS.gene26490:intron |
| TGGTTTAGGGCTGCTGTTCC+GGG | 0.286765 | 7.3:-7797551 | MS.gene26490:CDS |
| TCCTCAATGCAGTCAGGATT+TGG | 0.294288 | 7.3:-7796588 | MS.gene26490:CDS |
| ATAAATTTAAATTTCTCATT+AGG | 0.306536 | 7.3:+7799093 | None:intergenic |
| CAAATCACGATTCCGGTATC+TGG | 0.312051 | 7.3:-7800495 | MS.gene26490:CDS |
| CAGATTTGTGTCTTCTCTCC+AGG | 0.313551 | 7.3:-7794122 | MS.gene26490:CDS |
| TTTATCAGTTGTCTTCTATT+GGG | 0.317438 | 7.3:-7797091 | MS.gene26490:CDS |
| CCAAAGAAGAGTATTGTAAA+AGG | 0.322506 | 7.3:-7799138 | MS.gene26490:CDS |
| GTCCAGAAACTTGGATTATT+GGG | 0.325459 | 7.3:-7805571 | MS.gene26490:intron |
| GCTGCAATCTTTCATAATAG+TGG | 0.326993 | 7.3:+7796531 | None:intergenic |
| TTTAGGTGGTATGCTTCTCT+TGG | 0.329388 | 7.3:-7804946 | MS.gene26490:intron |
| ATTGAGTTTACCTTCAAATC+AGG | 0.331616 | 7.3:+7811353 | None:intergenic |
| GTCTAACTTACTGTCCAATA+TGG | 0.340479 | 7.3:+7805061 | None:intergenic |
| GTAGGTACTCTTGAAATTCT+TGG | 0.344442 | 7.3:-7799219 | MS.gene26490:CDS |
| AAACCAAAGAGGCCACAATA+AGG | 0.346466 | 7.3:+7797568 | None:intergenic |
| TTTCCCTTCGCAAACGTTGA+TGG | 0.355724 | 7.3:-7797027 | MS.gene26490:CDS |
| GCAGCATTCGGGCAAGTGCC+AGG | 0.358060 | 7.3:-7794024 | MS.gene26490:CDS |
| CACACCAGCATAACGCTTCC+AGG | 0.363942 | 7.3:+7806495 | None:intergenic |
| TGTCTTCTATTGGGCATCAC+TGG | 0.370495 | 7.3:-7797082 | MS.gene26490:CDS |
| CGATATTGCCTTACCTGGTT+GGG | 0.371467 | 7.3:+7794232 | None:intergenic |
| AGTCACCCAAAACTCGAATC+TGG | 0.373714 | 7.3:+7806596 | None:intergenic |
| TGCGAAGGGAAAATTGTATC+AGG | 0.374825 | 7.3:+7797038 | None:intergenic |
| TCTCCAGCATATGCCTTTCC+AGG | 0.377835 | 7.3:+7798812 | None:intergenic |
| CTAGCACGGGCCCCATTTCA+TGG | 0.380448 | 7.3:-7794505 | MS.gene26490:CDS |
| TTCCCAATAATCAAGAATCT+AGG | 0.381562 | 7.3:+7797823 | None:intergenic |
| CAATACGAACAATGTACCTT+TGG | 0.382692 | 7.3:-7796561 | MS.gene26490:CDS |
| GTTTCCCCATACATTTGGTC+TGG | 0.385835 | 7.3:-7794200 | MS.gene26490:CDS |
| CAATGTGAAGAAACATGATA+TGG | 0.386276 | 7.3:+7796995 | None:intergenic |
| AAGAATTTATGGTGGAGAAA+AGG | 0.386687 | 7.3:-7806786 | MS.gene26490:CDS |
| ATCATGTTTCTTCACATTGA+AGG | 0.387485 | 7.3:-7796991 | MS.gene26490:intron |
| ATTTAAATTTATGGTGATCA+AGG | 0.388663 | 7.3:-7799082 | MS.gene26490:intron |
| TCCATCAGAGTTTCCCGTTA+AGG | 0.390396 | 7.3:-7798759 | MS.gene26490:intron |
| GGTTGGGTTTCAGGAGCATT+TGG | 0.390700 | 7.3:+7794248 | None:intergenic |
| TCCATCCACTAGCCATGAAA+TGG | 0.391132 | 7.3:+7794493 | None:intergenic |
| TGTTAAGAAGCCTGATTTGA+AGG | 0.391135 | 7.3:-7811363 | MS.gene26490:intron |
| AGAATTTATGGTGGAGAAAA+GGG | 0.393021 | 7.3:-7806785 | MS.gene26490:CDS |
| ACAGTGTTTCCCCATACATT+TGG | 0.395001 | 7.3:-7794205 | MS.gene26490:CDS |
| ACTTAATGTGTCCAGAAACT+TGG | 0.396056 | 7.3:-7805580 | MS.gene26490:intron |
| GACACCTGGCTACAGAAAAC+AGG | 0.396186 | 7.3:-7804657 | MS.gene26490:intron |
| ACTGTTTCAGACATGACATT+AGG | 0.399220 | 7.3:+7797721 | None:intergenic |
| CATGGGCTCCAGGTTAATAT+TGG | 0.405337 | 7.3:+7794166 | None:intergenic |
| GTGAACGGAACCCTGAATCT+TGG | 0.409125 | 7.3:+7798841 | None:intergenic |
| TTCAAGAGTACCTACATCCT+TGG | 0.410015 | 7.3:+7799227 | None:intergenic |
| ATCAACCTCAGATACCAAAA+AGG | 0.412086 | 7.3:+7800218 | None:intergenic |
| CGGGATGGTCAAAAGCTTCA+TGG | 0.415861 | 7.3:+7809317 | None:intergenic |
| ACCACTACCATCAAAATCTA+TGG | 0.416856 | 7.3:+7794367 | None:intergenic |
| CAAGCATATGACGGAAATCC+TGG | 0.417937 | 7.3:-7804905 | MS.gene26490:CDS |
| AGATTTGCGGCAACTTATGC+TGG | 0.418592 | 7.3:-7798792 | MS.gene26490:CDS |
| TCAAGCATCAAAATAATCCT+TGG | 0.419633 | 7.3:-7807386 | MS.gene26490:CDS |
| ATACTATTTGACTGTGCTCC+AGG | 0.423197 | 7.3:-7793994 | MS.gene26490:CDS |
| AATGTGAAATTAGAGTTTCC+TGG | 0.425942 | 7.3:-7797793 | MS.gene26490:CDS |
| TGATGAAAAGAGGCAGCATT+CGG | 0.427390 | 7.3:-7794036 | MS.gene26490:CDS |
| ACGATATTGCCTTACCTGGT+TGG | 0.427610 | 7.3:+7794231 | None:intergenic |
| CTCCAGATACAGTACCTTAA+CGG | 0.430835 | 7.3:+7798745 | None:intergenic |
| TCCAGATACAGTACCTTAAC+GGG | 0.431960 | 7.3:+7798746 | None:intergenic |
| TTAGGTGGTATGCTTCTCTT+GGG | 0.434666 | 7.3:-7804945 | MS.gene26490:intron |
| CCATCCACTAGCCATGAAAT+GGG | 0.436221 | 7.3:+7794494 | None:intergenic |
| TAGAAGGGATGGAAGCTTGT+TGG | 0.436363 | 7.3:+7809059 | None:intergenic |
| AGCAGAACGGAGTAAGCATC+TGG | 0.436807 | 7.3:+7811568 | None:intergenic |
| AATTCGTGTGCTCAATCAAC+AGG | 0.436873 | 7.3:-7806951 | MS.gene26490:intron |
| AGATCAACAAATCTGCTCAT+TGG | 0.438057 | 7.3:+7809090 | None:intergenic |
| AATTCAAAACATAATTTGAC+AGG | 0.440680 | 7.3:+7794090 | None:intergenic |
| TTGAAATTCTTGGTGTTCGA+TGG | 0.443556 | 7.3:-7799209 | MS.gene26490:CDS |
| GGGTGACTTTCTTCAAGTTG+TGG | 0.445116 | 7.3:-7804842 | MS.gene26490:CDS |
| CTGTAGCTGCCTCCTTATAT+AGG | 0.445996 | 7.3:+7805491 | None:intergenic |
| AACCAAAGAGGCCACAATAA+GGG | 0.446196 | 7.3:+7797569 | None:intergenic |
| CCTTCGCAAACGTTGATGGC+TGG | 0.449580 | 7.3:-7797023 | MS.gene26490:CDS |
| TTTCAGGACACTTCAATTCA+AGG | 0.451062 | 7.3:-7797599 | MS.gene26490:intron |
| AAATAATTCTTGTGTCGTCT+TGG | 0.452125 | 7.3:+7804867 | None:intergenic |
| CGTTCACTCTTTACCTGGAA+AGG | 0.453003 | 7.3:-7798825 | MS.gene26490:CDS |
| CCCTCTGCAAATCACGATTC+CGG | 0.453793 | 7.3:-7800502 | MS.gene26490:CDS |
| AAGCAACCAAGATCTTGATT+AGG | 0.453798 | 7.3:+7807148 | None:intergenic |
| GGCAACTTATGCTGGATTTG+AGG | 0.454277 | 7.3:-7798784 | MS.gene26490:CDS |
| ATCAAGATGGCGCCGCTGAC+AGG | 0.455824 | 7.3:-7808981 | MS.gene26490:intron |
| GCCTCACCTAATCAAGATCT+TGG | 0.458360 | 7.3:-7807154 | MS.gene26490:CDS |
| GATGCTTGATTGGAGCATCT+AGG | 0.459080 | 7.3:+7807400 | None:intergenic |
| TAGGTTTCTGCCACACGTAA+AGG | 0.461725 | 7.3:-7806825 | MS.gene26490:CDS |
| ACAGAAATGAGGAGTACATT+TGG | 0.464585 | 7.3:-7807459 | MS.gene26490:CDS |
| AGGAACTTCTGCCGAGGACA+TGG | 0.465983 | 7.3:+7794148 | None:intergenic |
| TGAACGGAACCCTGAATCTT+GGG | 0.466665 | 7.3:+7798842 | None:intergenic |
| TTGAATTTGTGAATGCGATA+AGG | 0.467572 | 7.3:+7811410 | None:intergenic |
| AAACTATCAGGCACTATAGT+TGG | 0.469142 | 7.3:-7799186 | MS.gene26490:CDS |
| TCGCTTGCATTACAATGTGC+AGG | 0.470451 | 7.3:-7797456 | MS.gene26490:intron |
| TCAAGAGTACCTACATCCTT+GGG | 0.470951 | 7.3:+7799228 | None:intergenic |
| GACCAACTTCTCAAGTGGCC+TGG | 0.473566 | 7.3:+7793976 | None:intergenic |
| TAATGAAGTTGATCACTTCA+AGG | 0.473998 | 7.3:-7800262 | MS.gene26490:CDS |
| ACAGTTTACTTCCGTATTTG+TGG | 0.475215 | 7.3:-7805472 | MS.gene26490:CDS |
| AGAGTATTGTAAAAGGAAGA+AGG | 0.476910 | 7.3:-7799131 | MS.gene26490:CDS |
| GAAGGCACGAGACCTATATA+AGG | 0.477633 | 7.3:-7805503 | MS.gene26490:CDS |
| ATTGATTCCTCAATGCAGTC+AGG | 0.479008 | 7.3:-7796594 | MS.gene26490:CDS |
| CTAGATCCAGACCAAATGTA+TGG | 0.479974 | 7.3:+7794194 | None:intergenic |
| ATTACAAGATTGATAAAGCC+TGG | 0.482139 | 7.3:-7806513 | MS.gene26490:CDS |
| ACGACACAAGAATTATTTCT+GGG | 0.484013 | 7.3:-7804862 | MS.gene26490:CDS |
| GATGAAAAGAGGCAGCATTC+GGG | 0.486069 | 7.3:-7794035 | MS.gene26490:CDS |
| CAACTCCAACCAATTACTCT+TGG | 0.486903 | 7.3:+7801489 | None:intergenic |
| CTGCCGAGGACATGGGCTCC+AGG | 0.487453 | 7.3:+7794156 | None:intergenic |
| GTTTAATATTTGTAGGATCT+GGG | 0.488142 | 7.3:-7795263 | MS.gene26490:intron |
| GGTGTTCGATGGAAACTATC+AGG | 0.490039 | 7.3:-7799198 | MS.gene26490:CDS |
| CAAGCATCAAAATAATCCTT+GGG | 0.491021 | 7.3:-7807385 | MS.gene26490:CDS |
| GGTTCCGTTCACTCTTTACC+TGG | 0.492277 | 7.3:-7798830 | MS.gene26490:CDS |
| AAAAGCTTCATGGTCTGAAA+AGG | 0.494445 | 7.3:+7809327 | None:intergenic |
| GTCTTCTATTGGGCATCACT+GGG | 0.494718 | 7.3:-7797081 | MS.gene26490:CDS |
| AAGCTTGTGGCATTCTTTGG+AGG | 0.497870 | 7.3:-7801539 | MS.gene26490:CDS |
| AAACTTCCATCTCAAGGTCT+AGG | 0.498792 | 7.3:-7794065 | MS.gene26490:CDS |
| AATTGGAAACTTCCATCTCA+AGG | 0.500933 | 7.3:-7794071 | MS.gene26490:CDS |
| GACGTTGTAGATTCTCTCAA+TGG | 0.501147 | 7.3:-7806756 | MS.gene26490:CDS |
| AAGACAGAGATACTCCATCT+TGG | 0.502226 | 7.3:-7809387 | MS.gene26490:CDS |
| ATGCTTGATTGGAGCATCTA+GGG | 0.502739 | 7.3:+7807401 | None:intergenic |
| ATTCTTGTGTCGTCTTGGAC+TGG | 0.503248 | 7.3:+7804872 | None:intergenic |
| GCACTACCTCACCACAAATA+CGG | 0.503836 | 7.3:+7805461 | None:intergenic |
| AAGTCATGATGCAATGTTTG+AGG | 0.504408 | 7.3:+7794470 | None:intergenic |
| GACAACGGCGACGATGGATC+CGG | 0.505127 | 7.3:-7811700 | None:intergenic |
| GAAAACAGGGCGGACATTTG+AGG | 0.506852 | 7.3:-7804643 | MS.gene26490:CDS |
| GCCGTTGGGTCAAATGCTAC+TGG | 0.506980 | 7.3:-7811670 | MS.gene26490:CDS |
| CAATAAAGAGCTTGTCCGAA+TGG | 0.510074 | 7.3:-7809353 | MS.gene26490:CDS |
| TGCGAAAATCTTACAAGCCA+CGG | 0.510709 | 7.3:+7809297 | None:intergenic |
| AGAAATCACTCCGGTGGTGA+TGG | 0.511493 | 7.3:-7811646 | MS.gene26490:CDS |
| TGACATCATGCCACCCTGCT+TGG | 0.513010 | 7.3:+7794297 | None:intergenic |
| TCCTGAAACCCAACCAGGTA+AGG | 0.513148 | 7.3:-7794240 | MS.gene26490:CDS |
| ATTACTGATGAACTTACATC+AGG | 0.514078 | 7.3:-7800444 | MS.gene26490:intron |
| CTTTAGATTTATTTCACAGA+AGG | 0.515071 | 7.3:+7794439 | None:intergenic |
| GGATCCGGCGAGAACGCCGT+TGG | 0.516002 | 7.3:-7811685 | MS.gene26490:CDS |
| CTGAAGGTGATCCAAAAGTT+CGG | 0.517678 | 7.3:+7804559 | None:intergenic |
| TGGACTGGTGACTACAAGCC+AGG | 0.518728 | 7.3:+7804887 | None:intergenic |
| AGATTTGTGTCTTCTCTCCA+GGG | 0.519275 | 7.3:-7794121 | MS.gene26490:CDS |
| TGCTGCCAAGAGTAATTGGT+TGG | 0.520383 | 7.3:-7801494 | MS.gene26490:CDS |
| AATCAAGTTATCACTGACTC+GGG | 0.522368 | 7.3:-7811191 | MS.gene26490:CDS |
| TTACAATACTCTTCTTTGGG+TGG | 0.523467 | 7.3:+7799142 | None:intergenic |
| GTTACTTTGAGTTCAGTCGC+TGG | 0.523713 | 7.3:+7794272 | None:intergenic |
| TCCCAATAATCAAGAATCTA+GGG | 0.524985 | 7.3:+7797824 | None:intergenic |
| TTACCTGGAAAGGCATATGC+TGG | 0.525875 | 7.3:-7798815 | MS.gene26490:CDS |
| TAGAAGACAACTGATAAACT+TGG | 0.526496 | 7.3:+7797096 | None:intergenic |
| TGATCACTCGCAGTTCTCAC+TGG | 0.528358 | 7.3:+7811434 | None:intergenic |
| GATCCGGCGAGAACGCCGTT+GGG | 0.528787 | 7.3:-7811684 | MS.gene26490:CDS |
| AGCTTCTTCAACGGAAGGAG+TGG | 0.532579 | 7.3:+7811617 | None:intergenic |
| GTCACCCAAAACTCGAATCT+GGG | 0.533262 | 7.3:+7806597 | None:intergenic |
| AAGCAAGCTTCTTCAACGGA+AGG | 0.534767 | 7.3:+7811612 | None:intergenic |
| ACCATTTACAGAAGCTGTGA+AGG | 0.536931 | 7.3:-7800544 | MS.gene26490:intron |
| ACCTTAACGGGAAACTCTGA+TGG | 0.538409 | 7.3:+7798758 | None:intergenic |
| GCATACAAAAGCAGCGGCGT+CGG | 0.539168 | 7.3:+7794397 | None:intergenic |
| CCCATTTCATGGCTAGTGGA+TGG | 0.539687 | 7.3:-7794494 | MS.gene26490:CDS |
| TCAAATAGTATTTATAGCCC+TGG | 0.540182 | 7.3:+7794006 | None:intergenic |
| TCCAGTAGCATTTGACCCAA+CGG | 0.541485 | 7.3:+7811669 | None:intergenic |
| CTCTTGGCAGCAGTAAATGA+TGG | 0.542722 | 7.3:+7801505 | None:intergenic |
| CAGCATTCGGGCAAGTGCCA+GGG | 0.543876 | 7.3:-7794023 | MS.gene26490:CDS |
| CAAGCATCACAGCAGAATGT+AGG | 0.544237 | 7.3:+7805358 | None:intergenic |
| AGGCATATGCTGGAGATTTG+CGG | 0.547513 | 7.3:-7798805 | MS.gene26490:CDS |
| TCCAACGATATTGCCTTACC+TGG | 0.547682 | 7.3:+7794227 | None:intergenic |
| TGACCCAACGGCGTTCTCGC+CGG | 0.548800 | 7.3:+7811681 | None:intergenic |
| CAGAGCATACCCAAGATTCA+GGG | 0.549673 | 7.3:-7798851 | MS.gene26490:CDS |
| GTAAAATATTAACAGAAATG+AGG | 0.551096 | 7.3:-7807470 | MS.gene26490:CDS |
| ACCAGGTAAGGCAATATCGT+TGG | 0.552816 | 7.3:-7794228 | MS.gene26490:CDS |
| CCATATTTGCGTGACATGGA+GGG | 0.553894 | 7.3:+7805303 | None:intergenic |
| GGGACTTACATACTTCATGT+TGG | 0.554194 | 7.3:-7805764 | MS.gene26490:CDS |
| CTCAGCAGTAGCATCAATCC+TGG | 0.554453 | 7.3:-7795200 | MS.gene26490:CDS |
| AAATCCATATTTGCGTGACA+TGG | 0.554551 | 7.3:+7805299 | None:intergenic |
| TTTGACAGGTCATACGTCCC+TGG | 0.557059 | 7.3:+7794104 | None:intergenic |
| GATCAACATCTCTTCGCTCA+AGG | 0.557809 | 7.3:-7804598 | MS.gene26490:CDS |
| CCAGCCATCAACGTTTGCGA+AGG | 0.558152 | 7.3:+7797023 | None:intergenic |
| GCGAAAATCTTACAAGCCAC+GGG | 0.558215 | 7.3:+7809298 | None:intergenic |
| AAAAGAAGCTGAATATTGCA+TGG | 0.562570 | 7.3:-7805731 | MS.gene26490:CDS |
| GGGCCCCATTTCATGGCTAG+TGG | 0.562795 | 7.3:-7794498 | MS.gene26490:CDS |
| TCTTGTATTCTTAATCGAGA+AGG | 0.563567 | 7.3:+7797167 | None:intergenic |
| CACATCACTTCCGACAGGTA+TGG | 0.565132 | 7.3:+7796619 | None:intergenic |
| TAGATCCAGACCAAATGTAT+GGG | 0.567405 | 7.3:+7794195 | None:intergenic |
| GTAACTCCTGATAACCAAGC+AGG | 0.567695 | 7.3:-7794311 | MS.gene26490:CDS |
| GGTCTGAAAAGGAAGCCATT+CGG | 0.568501 | 7.3:+7809338 | None:intergenic |
| GAAGCGTTATGCTGGTGTGC+AGG | 0.570829 | 7.3:-7806491 | MS.gene26490:intron |
| GAATCAAGTTATCACTGACT+CGG | 0.571952 | 7.3:-7811192 | MS.gene26490:CDS |
| GGAACTTCTGCCGAGGACAT+GGG | 0.572642 | 7.3:+7794149 | None:intergenic |
| AGCGAAGAGATGTTGATCAC+AGG | 0.573909 | 7.3:+7804603 | None:intergenic |
| TAACCTGGAGCCCATGTCCT+CGG | 0.575825 | 7.3:-7794159 | MS.gene26490:CDS |
| TGCTCTTTCAACAACATCGA+CGG | 0.575907 | 7.3:-7811549 | MS.gene26490:intron |
| TGAGATCAACTTACAGCTGA+AGG | 0.577365 | 7.3:+7804543 | None:intergenic |
| ATAAGTGTAACACCAGATAC+CGG | 0.580175 | 7.3:+7800483 | None:intergenic |
| TGACTTTCTTCAAGTTGTGG+AGG | 0.583578 | 7.3:-7804839 | MS.gene26490:intron |
| CCTTCTAAAAGACGGTGCAA+TGG | 0.583899 | 7.3:-7809043 | MS.gene26490:CDS |
| GGAGTTGTGCTTGGATGTGT+CGG | 0.584593 | 7.3:-7811153 | MS.gene26490:CDS |
| ACCAAATCCTGACTGCATTG+AGG | 0.584850 | 7.3:+7796587 | None:intergenic |
| CCGGAATCGTGATTTGCAGA+GGG | 0.585987 | 7.3:+7800502 | None:intergenic |
| AAAGCCTGGAAGCGTTATGC+TGG | 0.586094 | 7.3:-7806499 | MS.gene26490:CDS |
| GAGAAGACACAAATCTGAAG+AGG | 0.586626 | 7.3:+7794128 | None:intergenic |
| TAGGAGCTAGTGATGAAAAG+AGG | 0.587581 | 7.3:-7794046 | MS.gene26490:CDS |
| TCCATATTTGCGTGACATGG+AGG | 0.588513 | 7.3:+7805302 | None:intergenic |
| ACATTGACCAACTTCTCAAG+TGG | 0.592309 | 7.3:+7793971 | None:intergenic |
| TTACTTCCGTATTTGTGGTG+AGG | 0.594453 | 7.3:-7805467 | MS.gene26490:intron |
| TGAAACGAGACATCTAATGA+AGG | 0.596893 | 7.3:+7797197 | None:intergenic |
| AATGCTCCTGAAACCCAACC+AGG | 0.597010 | 7.3:-7794245 | MS.gene26490:CDS |
| TCAGTGACTCCCAAGGATGT+AGG | 0.597131 | 7.3:-7799237 | MS.gene26490:CDS |
| ACCAAATAAAGAATTTATGG+TGG | 0.600738 | 7.3:-7806794 | MS.gene26490:CDS |
| ACCGGAATCGTGATTTGCAG+AGG | 0.601276 | 7.3:+7800501 | None:intergenic |
| CAGCCATCAACGTTTGCGAA+GGG | 0.604387 | 7.3:+7797024 | None:intergenic |
| TTTGATAGTACTGCTAGCAC+GGG | 0.605710 | 7.3:-7794518 | MS.gene26490:intron |
| TTTCAAGCAAGCTTCTTCAA+CGG | 0.609710 | 7.3:+7811608 | None:intergenic |
| AAACTTACTTGTGAAGCCCA+AGG | 0.612565 | 7.3:+7807369 | None:intergenic |
| GTGGTGGATAGAAATGTTGA+AGG | 0.613073 | 7.3:-7805521 | MS.gene26490:CDS |
| ACCAAGATCTTGATTAGGTG+AGG | 0.613118 | 7.3:+7807153 | None:intergenic |
| ACATATGAACAGTGCGAACG+CGG | 0.614146 | 7.3:-7794342 | MS.gene26490:CDS |
| AATAACACATCACTTCCGAC+AGG | 0.614502 | 7.3:+7796614 | None:intergenic |
| CTTCCATCCCTTCTAAAAGA+CGG | 0.617103 | 7.3:-7809051 | MS.gene26490:CDS |
| TCAAATGTTTGTGTTACTGG+AGG | 0.618689 | 7.3:-7801433 | MS.gene26490:intron |
| TAGCTCGACCAATATTAACC+TGG | 0.619358 | 7.3:-7794174 | MS.gene26490:CDS |
| TAAGCACATCATTCCTAACA+TGG | 0.622793 | 7.3:-7806981 | MS.gene26490:CDS |
| GTCAATGCATACAAAAGCAG+CGG | 0.622828 | 7.3:+7794391 | None:intergenic |
| TTGGTGCACGACAATCAAGA+TGG | 0.623088 | 7.3:-7808994 | MS.gene26490:CDS |
| GTGGAAAGAACCATCACCAC+CGG | 0.624082 | 7.3:+7811636 | None:intergenic |
| AAATCTTACAAGCCACGGGA+TGG | 0.625119 | 7.3:+7809302 | None:intergenic |
| AACATGTCTACCATACCTGT+CGG | 0.625770 | 7.3:-7796629 | MS.gene26490:CDS |
| CTAGCTCCTAGACCTTGAGA+TGG | 0.626794 | 7.3:+7794059 | None:intergenic |
| TTCAAGGAGATCATCGACAT+CGG | 0.627858 | 7.3:-7796657 | MS.gene26490:CDS |
| AAGGTGAAACACCCTTATTG+TGG | 0.628995 | 7.3:-7797580 | MS.gene26490:CDS |
| CTTTCCAGGTAAAGAGTGAA+CGG | 0.631550 | 7.3:+7798826 | None:intergenic |
| GAGGTTGATTTCTCATTACG+AGG | 0.635568 | 7.3:-7800204 | MS.gene26490:CDS |
| TAACTCCTGATAACCAAGCA+GGG | 0.640737 | 7.3:-7794310 | MS.gene26490:CDS |
| CAGCAAAACGCTACACGATG+TGG | 0.643040 | 7.3:-7805547 | MS.gene26490:CDS |
| CTGAAGAGGAACTTCTGCCG+AGG | 0.647993 | 7.3:+7794142 | None:intergenic |
| TAACGTTGACGATATCAATG+AGG | 0.650469 | 7.3:-7807122 | MS.gene26490:intron |
| TCAACTATCAGTGACTCCCA+AGG | 0.652265 | 7.3:-7799244 | MS.gene26490:CDS |
| ATATAGAGAGAAATGTCACC+CGG | 0.652759 | 7.3:+7797533 | None:intergenic |
| CTACACGATGTGGTCTGTGG+TGG | 0.658121 | 7.3:-7805537 | MS.gene26490:CDS |
| ACAGCAGCCCTAAACCAAAG+AGG | 0.658277 | 7.3:+7797557 | None:intergenic |
| ATCAAGTTATCACTGACTCG+GGG | 0.659000 | 7.3:-7811190 | MS.gene26490:CDS |
| GTTGATTTCTCATTACGAGG+TGG | 0.662221 | 7.3:-7800201 | MS.gene26490:CDS |
| GGCACGAGACCTATATAAGG+AGG | 0.663866 | 7.3:-7805500 | MS.gene26490:CDS |
| TGGTGAGACATAACATGAGG+CGG | 0.666013 | 7.3:+7795167 | None:intergenic |
| AATTAGGCGATAATTTGACA+AGG | 0.666864 | 7.3:+7806543 | None:intergenic |
| AGATCCAGACCAAATGTATG+GGG | 0.671581 | 7.3:+7794196 | None:intergenic |
| ACTGGAAGAAATCACTCCGG+TGG | 0.674992 | 7.3:-7811652 | MS.gene26490:CDS |
| TTAACACTAAAGAAAGCTTG+TGG | 0.675287 | 7.3:-7801552 | MS.gene26490:CDS |
| TAATAGTGGAAATTGACCAA+AGG | 0.676015 | 7.3:+7796545 | None:intergenic |
| CATCCACTAGCCATGAAATG+GGG | 0.679007 | 7.3:+7794495 | None:intergenic |
| ACACCTGGCTACAGAAAACA+GGG | 0.685276 | 7.3:-7804656 | MS.gene26490:intron |
| TCAAGTTATCACTGACTCGG+GGG | 0.689688 | 7.3:-7811189 | MS.gene26490:CDS |
| CAATAATCAAGAATCTAGGG+TGG | 0.691649 | 7.3:+7797827 | None:intergenic |
| GCTACTGGAAGAAATCACTC+CGG | 0.692357 | 7.3:-7811655 | MS.gene26490:CDS |
| GAAGGGAAAATTGTATCAGG+AGG | 0.694496 | 7.3:+7797041 | None:intergenic |
| GGATTGATGCTACTGCTGAG+AGG | 0.696994 | 7.3:+7795203 | None:intergenic |
| ACGCTACACGATGTGGTCTG+TGG | 0.698262 | 7.3:-7805540 | MS.gene26490:CDS |
| GCAGCAGAAAGTGTCACATG+AGG | 0.701995 | 7.3:-7796513 | MS.gene26490:intron |
| AGAACATTCATACCTGTCAG+CGG | 0.704434 | 7.3:+7808969 | None:intergenic |
| TGTTGCTGTCAAGCATATGA+CGG | 0.709430 | 7.3:-7804914 | MS.gene26490:CDS |
| GTATGGTGAGACATAACATG+AGG | 0.718237 | 7.3:+7795164 | None:intergenic |
| TGAGGCGGATCAGATAAACC+AGG | 0.718759 | 7.3:+7795182 | None:intergenic |
| ACGAGGTGGTGAAACTACCA+CGG | 0.721328 | 7.3:-7800187 | MS.gene26490:intron |
| ATGTTGTTGAAAGAGCAGAA+CGG | 0.734652 | 7.3:+7811555 | None:intergenic |
| CTCCTGATAACCAAGCAGGG+TGG | 0.740591 | 7.3:-7794307 | MS.gene26490:CDS |
| CCTGGCTACAGAAAACAGGG+CGG | 0.814271 | 7.3:-7804653 | MS.gene26490:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 7793986 | 7811709 | 7793986 | ID=MS.gene26490 |
| chr7.3 | mRNA | 7793986 | 7811709 | 7793986 | ID=MS.gene26490.t1;Parent=MS.gene26490 |
| chr7.3 | exon | 7811550 | 7811709 | 7811550 | ID=MS.gene26490.t1.exon1;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7811550 | 7811709 | 7811550 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7811364 | 7811458 | 7811364 | ID=MS.gene26490.t1.exon2;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7811364 | 7811458 | 7811364 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7811132 | 7811231 | 7811132 | ID=MS.gene26490.t1.exon3;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7811132 | 7811231 | 7811132 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7809311 | 7809415 | 7809311 | ID=MS.gene26490.t1.exon4;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7809311 | 7809415 | 7809311 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7808982 | 7809144 | 7808982 | ID=MS.gene26490.t1.exon5;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7808982 | 7809144 | 7808982 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7807377 | 7807497 | 7807377 | ID=MS.gene26490.t1.exon6;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7807377 | 7807497 | 7807377 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7807123 | 7807185 | 7807123 | ID=MS.gene26490.t1.exon7;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7807123 | 7807185 | 7807123 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7806952 | 7807032 | 7806952 | ID=MS.gene26490.t1.exon8;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7806952 | 7807032 | 7806952 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7806750 | 7806844 | 7806750 | ID=MS.gene26490.t1.exon9;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7806750 | 7806844 | 7806750 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7806492 | 7806642 | 7806492 | ID=MS.gene26490.t1.exon10;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7806492 | 7806642 | 7806492 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7805708 | 7805794 | 7805708 | ID=MS.gene26490.t1.exon11;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7805708 | 7805794 | 7805708 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7805468 | 7805587 | 7805468 | ID=MS.gene26490.t1.exon12;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7805468 | 7805587 | 7805468 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7805257 | 7805385 | 7805257 | ID=MS.gene26490.t1.exon13;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7805257 | 7805385 | 7805257 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7805072 | 7805169 | 7805072 | ID=MS.gene26490.t1.exon14;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7805072 | 7805169 | 7805072 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7804840 | 7804963 | 7804840 | ID=MS.gene26490.t1.exon15;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7804840 | 7804963 | 7804840 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7804557 | 7804664 | 7804557 | ID=MS.gene26490.t1.exon16;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7804557 | 7804664 | 7804557 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7801434 | 7801575 | 7801434 | ID=MS.gene26490.t1.exon17;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7801434 | 7801575 | 7801434 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7800445 | 7800555 | 7800445 | ID=MS.gene26490.t1.exon18;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7800445 | 7800555 | 7800445 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7800188 | 7800312 | 7800188 | ID=MS.gene26490.t1.exon19;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7800188 | 7800312 | 7800188 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7799083 | 7799268 | 7799083 | ID=MS.gene26490.t1.exon20;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7799083 | 7799268 | 7799083 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7798760 | 7798870 | 7798760 | ID=MS.gene26490.t1.exon21;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7798760 | 7798870 | 7798760 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7797705 | 7797869 | 7797705 | ID=MS.gene26490.t1.exon22;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7797705 | 7797869 | 7797705 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7797457 | 7797615 | 7797457 | ID=MS.gene26490.t1.exon23;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7797457 | 7797615 | 7797457 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7796992 | 7797225 | 7796992 | ID=MS.gene26490.t1.exon24;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7796992 | 7797225 | 7796992 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7796514 | 7796681 | 7796514 | ID=MS.gene26490.t1.exon25;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7796514 | 7796681 | 7796514 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7795164 | 7795270 | 7795164 | ID=MS.gene26490.t1.exon26;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7795164 | 7795270 | 7795164 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| chr7.3 | exon | 7793986 | 7794532 | 7793986 | ID=MS.gene26490.t1.exon27;Parent=MS.gene26490.t1 |
| chr7.3 | CDS | 7793986 | 7794532 | 7793986 | ID=cds.MS.gene26490.t1;Parent=MS.gene26490.t1 |
| Gene Sequence |
| Protein sequence |
