Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26571.t1 | AES90270.2 | 92.2 | 472 | 21 | 1 | 1 | 472 | 29 | 484 | 1.20E-228 | 802.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26571.t1 | G7JNM2 | 92.2 | 472 | 21 | 1 | 1 | 472 | 29 | 484 | 8.3e-229 | 802.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054624 | MS.gene26571 | 0.814556 | 1.45E-51 | -1.69E-46 |
| MS.gene054662 | MS.gene26571 | 0.801038 | 1.09E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26571.t1 | MTR_4g087360 | 93.856 | 472 | 13 | 1 | 1 | 472 | 1 | 456 | 0.0 | 910 |
| MS.gene26571.t1 | MTR_4g087360 | 93.856 | 472 | 13 | 1 | 1 | 472 | 29 | 484 | 0.0 | 909 |
| MS.gene26571.t1 | MTR_4g087350 | 57.241 | 290 | 105 | 5 | 1 | 288 | 1 | 273 | 1.49e-87 | 270 |
| MS.gene26571.t1 | MTR_8g006760 | 33.113 | 302 | 174 | 7 | 25 | 310 | 53 | 342 | 6.68e-40 | 148 |
| MS.gene26571.t1 | MTR_7g007590 | 27.964 | 329 | 161 | 12 | 14 | 331 | 46 | 309 | 8.85e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26571.t1 | AT3G59670 | 41.273 | 487 | 222 | 19 | 25 | 472 | 56 | 517 | 1.82e-82 | 264 |
| MS.gene26571.t1 | AT4G37440 | 35.231 | 281 | 163 | 8 | 24 | 301 | 68 | 332 | 6.76e-37 | 140 |
| MS.gene26571.t1 | AT4G37440 | 35.231 | 281 | 163 | 8 | 24 | 301 | 68 | 332 | 6.90e-37 | 141 |
| MS.gene26571.t1 | AT4G37440 | 35.231 | 281 | 163 | 8 | 24 | 301 | 68 | 332 | 1.26e-36 | 140 |
| MS.gene26571.t1 | AT3G50040 | 33.149 | 181 | 106 | 6 | 100 | 273 | 108 | 280 | 1.61e-20 | 93.6 |
| MS.gene26571.t1 | AT3G50040 | 33.149 | 181 | 106 | 6 | 100 | 273 | 108 | 280 | 2.78e-20 | 93.2 |
| MS.gene26571.t1 | AT3G50040 | 33.149 | 181 | 106 | 6 | 100 | 273 | 108 | 280 | 2.78e-20 | 93.2 |
| MS.gene26571.t1 | AT3G50040 | 33.149 | 181 | 106 | 6 | 100 | 273 | 108 | 280 | 2.78e-20 | 93.2 |
Find 94 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAACCTCGAAACATTTC+TGG | 0.246323 | 4.1:+22788036 | None:intergenic |
| CTCTGATGTGGCGTCTAAAA+TGG | 0.252327 | 4.1:-22788919 | MS.gene26571:CDS |
| CTGTACTTGTGACTTGAAAA+TGG | 0.264924 | 4.1:+22788764 | None:intergenic |
| TGAACTTCAGGAGGTGAAAA+TGG | 0.307775 | 4.1:-22787224 | MS.gene26571:CDS |
| AGTCTTATTCACTGATTATC+AGG | 0.308225 | 4.1:+22786986 | None:intergenic |
| GACAGCTGTGTTTCAAGCTT+TGG | 0.311111 | 4.1:-22787842 | MS.gene26571:CDS |
| TTTCACCTCCTGAAGCTTCT+GGG | 0.320720 | 4.1:+22787180 | None:intergenic |
| GTCTGATGCTGATGGCTCTT+TGG | 0.338203 | 4.1:-22788510 | MS.gene26571:CDS |
| TGTTCTGATGCATGAACTTC+AGG | 0.338964 | 4.1:-22787236 | MS.gene26571:CDS |
| GCAAGCCCTCATGATACTTT+TGG | 0.339612 | 4.1:-22789727 | MS.gene26571:CDS |
| AATTTGCTTGAGTCTTATTT+CGG | 0.351566 | 4.1:+22788895 | None:intergenic |
| TCTGTTCTTGATGAACAAAT+TGG | 0.353691 | 4.1:-22789955 | MS.gene26571:CDS |
| CAATCCCACCCAGAAGCTTC+AGG | 0.360739 | 4.1:-22787188 | MS.gene26571:CDS |
| CCATTCCCAGCAGAATTTGT+AGG | 0.379539 | 4.1:+22787953 | None:intergenic |
| TGAGAGCACTGTTGGTTTGT+TGG | 0.381844 | 4.1:-22787792 | MS.gene26571:CDS |
| GGAATTAAAGTCACCTTGTT+CGG | 0.384584 | 4.1:+22789695 | None:intergenic |
| CTTGAATATTCAGTTGCATC+AGG | 0.386365 | 4.1:+22789841 | None:intergenic |
| TCGGCCTTGGTTGCCGACTC+TGG | 0.398219 | 4.1:-22787746 | MS.gene26571:CDS |
| GGAGAACGCAAAGCTGGTTC+AGG | 0.405672 | 4.1:-22787037 | MS.gene26571:CDS |
| GCACATCACCATGAAGAATA+AGG | 0.413362 | 4.1:+22787996 | None:intergenic |
| ACCTCCTGAAGCTTCTGGGT+GGG | 0.414016 | 4.1:+22787184 | None:intergenic |
| TGTCACCCTCCAATCGGCCT+TGG | 0.422704 | 4.1:-22787759 | MS.gene26571:CDS |
| ACAGTGCTCTCAATTATATC+AGG | 0.430041 | 4.1:+22787803 | None:intergenic |
| AGAAGCTTCAGGAGGTGAAA+AGG | 0.432992 | 4.1:-22787177 | MS.gene26571:CDS |
| GAAGTGGATTCAGAGTTCTT+TGG | 0.433390 | 4.1:-22789763 | MS.gene26571:CDS |
| AGAGGAAGTTGACAGATCAT+TGG | 0.438955 | 4.1:-22788958 | MS.gene26571:CDS |
| CATGGCCAATCCCGTCGTTA+AGG | 0.441041 | 4.1:-22789983 | MS.gene26571:CDS |
| CACTGATTATCAGGTTCCCC+AGG | 0.452914 | 4.1:+22786995 | None:intergenic |
| CAAAGTCCTACAAATTCTGC+TGG | 0.460562 | 4.1:-22787959 | MS.gene26571:CDS |
| CTCAATTATATCAGGAATGC+TGG | 0.465235 | 4.1:+22787811 | None:intergenic |
| CCTACAAATTCTGCTGGGAA+TGG | 0.476255 | 4.1:-22787953 | MS.gene26571:CDS |
| GATATAATTGAGAGCACTGT+TGG | 0.485330 | 4.1:-22787800 | MS.gene26571:CDS |
| ACGGCATCTGTTGGAGTTGG+AGG | 0.501116 | 4.1:-22787926 | MS.gene26571:CDS |
| AATGGATACACGGCATCTGT+TGG | 0.502595 | 4.1:-22787935 | MS.gene26571:CDS |
| GAAGCTTCAGGAGGTGAAAA+GGG | 0.504312 | 4.1:-22787176 | MS.gene26571:CDS |
| AAGCTTGAAACACAGCTGTC+AGG | 0.505459 | 4.1:+22787845 | None:intergenic |
| ACATTGAAAATCTACAATGT+AGG | 0.506632 | 4.1:-22788096 | MS.gene26571:CDS |
| GCAAAGCTGGTTCAGGTGGT+TGG | 0.507072 | 4.1:-22787030 | MS.gene26571:CDS |
| TCACGTCCAGAAATGTTTCG+AGG | 0.507311 | 4.1:-22788042 | MS.gene26571:CDS |
| GGTTGGAACATGAAGTCCCC+TGG | 0.508821 | 4.1:-22787013 | MS.gene26571:CDS |
| ATCTGACATGAGAATAGAAA+CGG | 0.514060 | 4.1:+22787132 | None:intergenic |
| AAGTCACAAGTACAGAAGTA+AGG | 0.515253 | 4.1:-22788756 | MS.gene26571:CDS |
| AGTCGGCAACCAAGGCCGAT+TGG | 0.521202 | 4.1:+22787750 | None:intergenic |
| TCAGGAGGTGAAAAGGGAAG+TGG | 0.522015 | 4.1:-22787170 | MS.gene26571:CDS |
| CACCTCCTGAAGCTTCTGGG+TGG | 0.522706 | 4.1:+22787183 | None:intergenic |
| CTCCACCTTAACGACGGGAT+TGG | 0.526761 | 4.1:+22789978 | None:intergenic |
| CATTGAAAATCTACAATGTA+GGG | 0.528238 | 4.1:-22788095 | MS.gene26571:CDS |
| AGTCACCTTGTTCGGAACTC+AGG | 0.528629 | 4.1:+22789703 | None:intergenic |
| AAGATCAAGTGATGCTGAAG+TGG | 0.528838 | 4.1:-22789779 | MS.gene26571:CDS |
| TGCTGATGTCACCCTCCAAT+CGG | 0.529019 | 4.1:-22787765 | MS.gene26571:CDS |
| TACACGGCATCTGTTGGAGT+TGG | 0.531038 | 4.1:-22787929 | MS.gene26571:CDS |
| GTGAAAAGGGAAGTGGAAGA+AGG | 0.534943 | 4.1:-22787163 | MS.gene26571:CDS |
| AAGCGTGGAGAACGCAAAGC+TGG | 0.540083 | 4.1:-22787043 | MS.gene26571:CDS |
| CGGCAACCAAGGCCGATTGG+AGG | 0.540629 | 4.1:+22787753 | None:intergenic |
| GGCAACCAAGGCCGATTGGA+GGG | 0.541238 | 4.1:+22787754 | None:intergenic |
| TGGACGAACAAGGGTGATGT+TGG | 0.545407 | 4.1:-22789883 | MS.gene26571:CDS |
| TCAGGAGGTGAAAATGGAAG+TGG | 0.551172 | 4.1:-22787218 | MS.gene26571:CDS |
| GTGTCAGTGCATTTGAGCAA+AGG | 0.557356 | 4.1:+22788148 | None:intergenic |
| GGCCAATCCCGTCGTTAAGG+TGG | 0.558790 | 4.1:-22789980 | MS.gene26571:CDS |
| GGAAGTTGACAGATCATTGG+AGG | 0.560199 | 4.1:-22788955 | MS.gene26571:CDS |
| ACAGACTCCACCTTAACGAC+GGG | 0.568340 | 4.1:+22789973 | None:intergenic |
| GTTGGAACATGAAGTCCCCT+GGG | 0.571232 | 4.1:-22787012 | MS.gene26571:CDS |
| TTCACCAGAGTCGGCAACCA+AGG | 0.581301 | 4.1:+22787742 | None:intergenic |
| ACTCACATGTTCACCAGAGT+CGG | 0.590003 | 4.1:+22787733 | None:intergenic |
| GTATGACAAGGTAAAGCATA+CGG | 0.590399 | 4.1:-22788834 | MS.gene26571:CDS |
| GAACGCAAAGCTGGTTCAGG+TGG | 0.594342 | 4.1:-22787034 | MS.gene26571:CDS |
| ATCAGAGTCTGTATCAGCAA+AGG | 0.596262 | 4.1:+22789816 | None:intergenic |
| TTGAATATTCAGTTGCATCA+GGG | 0.596580 | 4.1:+22789842 | None:intergenic |
| TTCTGCTGGGAATGGATACA+CGG | 0.600834 | 4.1:-22787945 | MS.gene26571:CDS |
| GTTCTGAAGGAGCAGCTCAA+AGG | 0.601866 | 4.1:+22788117 | None:intergenic |
| AATAAGAAGTCTGATGCTGA+TGG | 0.604157 | 4.1:-22788518 | MS.gene26571:CDS |
| TATTGTGAGTTGGACGAACA+AGG | 0.606643 | 4.1:-22789893 | MS.gene26571:CDS |
| TTGGTCCTGAGTTCCGAACA+AGG | 0.611859 | 4.1:-22789708 | MS.gene26571:intron |
| CAGATGTTGATATTGTGAGT+TGG | 0.612336 | 4.1:-22789903 | MS.gene26571:CDS |
| ACTGATTATCAGGTTCCCCA+GGG | 0.614893 | 4.1:+22786996 | None:intergenic |
| AGGGTCCGCACACTGAAAAG+TGG | 0.615591 | 4.1:-22788076 | MS.gene26571:CDS |
| AAAGTCCTACAAATTCTGCT+GGG | 0.619351 | 4.1:-22787958 | MS.gene26571:CDS |
| ATTTCATCCGACCTCTGATG+TGG | 0.624861 | 4.1:-22788931 | MS.gene26571:CDS |
| GTAAGGCGAAAATGAGAAGA+CGG | 0.626636 | 4.1:-22788739 | MS.gene26571:CDS |
| AACAGACTCCACCTTAACGA+CGG | 0.636006 | 4.1:+22789972 | None:intergenic |
| TCAGGACCAAAAGTATCATG+AGG | 0.639160 | 4.1:+22789721 | None:intergenic |
| TTAGACGCCACATCAGAGGT+CGG | 0.649299 | 4.1:+22788924 | None:intergenic |
| CTTGTGACTTGAAAATGGCA+AGG | 0.651026 | 4.1:+22788769 | None:intergenic |
| TGTGTGAATAAAAGAAAGCG+TGG | 0.656272 | 4.1:-22787058 | MS.gene26571:CDS |
| CAGGACCAAAAGTATCATGA+GGG | 0.684798 | 4.1:+22789722 | None:intergenic |
| AAAGAAAGCTGAGGATACAA+CGG | 0.687849 | 4.1:-22788714 | MS.gene26571:CDS |
| TCCCACCCAGAAGCTTCAGG+AGG | 0.699328 | 4.1:-22787185 | MS.gene26571:CDS |
| CTGATTATCAGGTTCCCCAG+GGG | 0.702960 | 4.1:+22786997 | None:intergenic |
| ATTGTGAGTTGGACGAACAA+GGG | 0.703347 | 4.1:-22789892 | MS.gene26571:CDS |
| AGAACTTGCAGAGTATGACA+AGG | 0.715284 | 4.1:-22788846 | MS.gene26571:CDS |
| AAGACGGCGAAAGAAAGCTG+AGG | 0.722162 | 4.1:-22788723 | MS.gene26571:CDS |
| TCTGATGCATGAACTTCAGG+AGG | 0.750934 | 4.1:-22787233 | MS.gene26571:CDS |
| TGACAAGGTAAAGCATACGG+CGG | 0.760192 | 4.1:-22788831 | MS.gene26571:CDS |
| TTGGAACATGAAGTCCCCTG+GGG | 0.780983 | 4.1:-22787011 | MS.gene26571:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAAATATATTAATTTTCT+TGG | - | chr4.1:22789579-22789598 | MS.gene26571:intron | 10.0% |
| !!! | TTATTTATATTTTTGATACA+TGG | - | chr4.1:22787974-22787993 | MS.gene26571:CDS | 10.0% |
| !! | TAATTAAAGATTTGCATATT+TGG | + | chr4.1:22787305-22787324 | None:intergenic | 15.0% |
| !! | AAATATGCCTATTAACTATT+AGG | + | chr4.1:22787565-22787584 | None:intergenic | 20.0% |
| !! | AAATCTTTAATTATCTTCCT+TGG | - | chr4.1:22787312-22787331 | MS.gene26571:intron | 20.0% |
| !! | AAGAGTTAGAATAAAAACTA+TGG | + | chr4.1:22787733-22787752 | None:intergenic | 20.0% |
| !! | ACTTAAAACAACAACTAAAA+AGG | - | chr4.1:22789615-22789634 | MS.gene26571:intron | 20.0% |
| !! | AGAGTTAGAATAAAAACTAT+GGG | + | chr4.1:22787732-22787751 | None:intergenic | 20.0% |
| !! | AGCATATAAAAAAACTATCA+TGG | + | chr4.1:22788749-22788768 | None:intergenic | 20.0% |
| !! | ATTCAAACCTAATAGTTAAT+AGG | - | chr4.1:22787555-22787574 | MS.gene26571:intron | 20.0% |
| !! | CATATTGATATGTATTTGTT+AGG | - | chr4.1:22789368-22789387 | MS.gene26571:intron | 20.0% |
| !! | CTAACAAATACATATCAATA+TGG | + | chr4.1:22789370-22789389 | None:intergenic | 20.0% |
| !! | CTTAAAACAACAACTAAAAA+GGG | - | chr4.1:22789616-22789635 | MS.gene26571:intron | 20.0% |
| !! | GAATCGAAATAAATCATATT+TGG | + | chr4.1:22789348-22789367 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTATATGCTCTTT+TGG | - | chr4.1:22788753-22788772 | MS.gene26571:CDS | 20.0% |
| ! | ACATTGAAAATCTACAATGT+AGG | - | chr4.1:22788880-22788899 | MS.gene26571:CDS | 25.0% |
| ! | CATTGAAAATCTACAATGTA+GGG | - | chr4.1:22788881-22788900 | MS.gene26571:CDS | 25.0% |
| ! | GATTACTAGGCAAAATTAAA+GGG | + | chr4.1:22788698-22788717 | None:intergenic | 25.0% |
| ! | TACAAAAGCGACAATTAAAA+AGG | + | chr4.1:22789396-22789415 | None:intergenic | 25.0% |
| ! | TACATCAAAATGTGATTACT+AGG | + | chr4.1:22788711-22788730 | None:intergenic | 25.0% |
| ! | TCGAAATAAATCATATTTGG+TGG | + | chr4.1:22789345-22789364 | None:intergenic | 25.0% |
| ! | TCTTTCACTTTATTAACCTT+TGG | - | chr4.1:22788660-22788679 | MS.gene26571:intron | 25.0% |
| ! | TGATTACTAGGCAAAATTAA+AGG | + | chr4.1:22788699-22788718 | None:intergenic | 25.0% |
| ! | TTATTCTCTACAGTAAGTAA+AGG | + | chr4.1:22788443-22788462 | None:intergenic | 25.0% |
| !! | CGAATTAATTGACTCTAAAA+AGG | + | chr4.1:22787825-22787844 | None:intergenic | 25.0% |
| !! | TCTAGTTAGATTGTGTTTTA+TGG | - | chr4.1:22787890-22787909 | MS.gene26571:CDS | 25.0% |
| !!! | AATTTGCTTGAGTCTTATTT+CGG | + | chr4.1:22788084-22788103 | None:intergenic | 25.0% |
| !!! | AATTTTAGCCTTATTCTTCA+TGG | - | chr4.1:22788972-22788991 | MS.gene26571:intron | 25.0% |
| !!! | ATGTGAGTTTTCTAAAAGTA+TGG | - | chr4.1:22789258-22789277 | MS.gene26571:intron | 25.0% |
| !!! | GACTTTTATTTTACTGCATA+TGG | + | chr4.1:22787430-22787449 | None:intergenic | 25.0% |
| ATCAAAGCATGCAATATCTA+AGG | + | chr4.1:22787678-22787697 | None:intergenic | 30.0% | |
| ATCTGACATGAGAATAGAAA+CGG | + | chr4.1:22789847-22789866 | None:intergenic | 30.0% | |
| ATTCACATACTTCTCTGAAT+TGG | + | chr4.1:22788413-22788432 | None:intergenic | 30.0% | |
| CTATTTATTGCAACGAGAAA+AGG | - | chr4.1:22789495-22789514 | MS.gene26571:intron | 30.0% | |
| TAACATATTGACCTCTAACT+GGG | + | chr4.1:22787467-22787486 | None:intergenic | 30.0% | |
| TCGTTGCAATAAATAGTGAA+GGG | + | chr4.1:22789491-22789510 | None:intergenic | 30.0% | |
| TCTGTTCTTGATGAACAAAT+TGG | - | chr4.1:22787021-22787040 | MS.gene26571:CDS | 30.0% | |
| TCTTTCATTGAGAGAAAATG+AGG | - | chr4.1:22788579-22788598 | MS.gene26571:intron | 30.0% | |
| TGATGCTTCAGTAAGAAATT+AGG | - | chr4.1:22787636-22787655 | MS.gene26571:intron | 30.0% | |
| TGGATTTCCTGTATTAATGT+AGG | - | chr4.1:22787994-22788013 | MS.gene26571:CDS | 30.0% | |
| TTAACATATTGACCTCTAAC+TGG | + | chr4.1:22787468-22787487 | None:intergenic | 30.0% | |
| TTATGGTGAAGCAAAATTCT+TGG | - | chr4.1:22787907-22787926 | MS.gene26571:CDS | 30.0% | |
| TTCACATACTTCTCTGAATT+GGG | + | chr4.1:22788412-22788431 | None:intergenic | 30.0% | |
| TTGAATATTCAGTTGCATCA+GGG | + | chr4.1:22787137-22787156 | None:intergenic | 30.0% | |
| ! | CATTTTACCTTAAAAGAGTC+TGG | - | chr4.1:22788176-22788195 | MS.gene26571:CDS | 30.0% |
| ! | GTAGATTTTCAATGTTCTGA+AGG | + | chr4.1:22788875-22788894 | None:intergenic | 30.0% |
| ! | TCAACATTTTCATAAGACCA+GGG | + | chr4.1:22787374-22787393 | None:intergenic | 30.0% |
| ! | TTTTCTGTTGAATCAACATG+TGG | + | chr4.1:22788795-22788814 | None:intergenic | 30.0% |
| !!! | CACTATCTTTTTTCCTATCT+CGG | - | chr4.1:22788308-22788327 | MS.gene26571:intron | 30.0% |
| AAAAAAGCTCATACCGAGAT+AGG | + | chr4.1:22788324-22788343 | None:intergenic | 35.0% | |
| AAAGAAAGCTGAGGATACAA+CGG | - | chr4.1:22788262-22788281 | MS.gene26571:intron | 35.0% | |
| AAAGTCCTACAAATTCTGCT+GGG | - | chr4.1:22789018-22789037 | MS.gene26571:intron | 35.0% | |
| AACATATTGACCTCTAACTG+GGG | + | chr4.1:22787466-22787485 | None:intergenic | 35.0% | |
| AAGACAAAACTTCTTACGAC+TGG | - | chr4.1:22789654-22789673 | MS.gene26571:intron | 35.0% | |
| AAGTCACAAGTACAGAAGTA+AGG | - | chr4.1:22788220-22788239 | MS.gene26571:intron | 35.0% | |
| AATAAGAAGTCTGATGCTGA+TGG | - | chr4.1:22788458-22788477 | MS.gene26571:intron | 35.0% | |
| ACAGTGCTCTCAATTATATC+AGG | + | chr4.1:22789176-22789195 | None:intergenic | 35.0% | |
| AGAAAACCTCGAAACATTTC+TGG | + | chr4.1:22788943-22788962 | None:intergenic | 35.0% | |
| AGCTAGTTGAAAAGTGAGTA+AGG | - | chr4.1:22787501-22787520 | MS.gene26571:intron | 35.0% | |
| ATCAATTGACGATTAGCACA+AGG | + | chr4.1:22787853-22787872 | None:intergenic | 35.0% | |
| ATTCAACTGCATTACGTTTC+TGG | - | chr4.1:22788619-22788638 | MS.gene26571:intron | 35.0% | |
| CACAATCTAACTAGATACAG+TGG | + | chr4.1:22787885-22787904 | None:intergenic | 35.0% | |
| CAGATGTTGATATTGTGAGT+TGG | - | chr4.1:22787073-22787092 | MS.gene26571:CDS | 35.0% | |
| CTCAATTATATCAGGAATGC+TGG | + | chr4.1:22789168-22789187 | None:intergenic | 35.0% | |
| CTCGTTGCAATAAATAGTGA+AGG | + | chr4.1:22789492-22789511 | None:intergenic | 35.0% | |
| CTGTACTTGTGACTTGAAAA+TGG | + | chr4.1:22788215-22788234 | None:intergenic | 35.0% | |
| CTTGAATATTCAGTTGCATC+AGG | + | chr4.1:22787138-22787157 | None:intergenic | 35.0% | |
| GGAATTAAAGTCACCTTGTT+CGG | + | chr4.1:22787284-22787303 | None:intergenic | 35.0% | |
| GTATGACAAGGTAAAGCATA+CGG | - | chr4.1:22788142-22788161 | MS.gene26571:CDS | 35.0% | |
| TCACATACTTCTCTGAATTG+GGG | + | chr4.1:22788411-22788430 | None:intergenic | 35.0% | |
| TCCTCTTCCTACATTAATAC+AGG | + | chr4.1:22788004-22788023 | None:intergenic | 35.0% | |
| TCCTGTATTAATGTAGGAAG+AGG | - | chr4.1:22788000-22788019 | MS.gene26571:CDS | 35.0% | |
| TGTGTGAATAAAAGAAAGCG+TGG | - | chr4.1:22789918-22789937 | MS.gene26571:CDS | 35.0% | |
| TTAGCATATCATTAGCAGCA+AGG | + | chr4.1:22788521-22788540 | None:intergenic | 35.0% | |
| TTCATTGAGAGAAAATGAGG+AGG | - | chr4.1:22788582-22788601 | MS.gene26571:intron | 35.0% | |
| TTGTGCTAATCGTCAATTGA+TGG | - | chr4.1:22787852-22787871 | MS.gene26571:CDS | 35.0% | |
| TTTCACATGTCATATACAGC+TGG | + | chr4.1:22787608-22787627 | None:intergenic | 35.0% | |
| ! | ACGCTTTCTTTTATTCACAC+AGG | + | chr4.1:22789919-22789938 | None:intergenic | 35.0% |
| ! | CTCAACATTTTCATAAGACC+AGG | + | chr4.1:22787375-22787394 | None:intergenic | 35.0% |
| ! | TGTTTCGAGGTTTTCTTCAT+CGG | - | chr4.1:22788947-22788966 | MS.gene26571:CDS | 35.0% |
| ! | TTTCGAACCAGACTCTTTTA+AGG | + | chr4.1:22788186-22788205 | None:intergenic | 35.0% |
| !! | ATTTTAACAGCACTAGTGAG+TGG | + | chr4.1:22788548-22788567 | None:intergenic | 35.0% |
| !! | GATATAATTGAGAGCACTGT+TGG | - | chr4.1:22789176-22789195 | MS.gene26571:intron | 35.0% |
| !! | GATGATGATTTTGACAATCC+GGG | - | chr4.1:22788488-22788507 | MS.gene26571:intron | 35.0% |
| !! | GGATGATGATTTTGACAATC+CGG | - | chr4.1:22788487-22788506 | MS.gene26571:intron | 35.0% |
| !! | GTCCTTTTTCATATACTGGT+CGG | + | chr4.1:22787352-22787371 | None:intergenic | 35.0% |
| AACTATGGGTGATGAACAGT+TGG | + | chr4.1:22787718-22787737 | None:intergenic | 40.0% | |
| AAGATCAAGTGATGCTGAAG+TGG | - | chr4.1:22787197-22787216 | MS.gene26571:CDS | 40.0% | |
| ACAAAACTTCTTACGACTGG+TGG | - | chr4.1:22789657-22789676 | MS.gene26571:intron | 40.0% | |
| AGAACTTGCAGAGTATGACA+AGG | - | chr4.1:22788130-22788149 | MS.gene26571:CDS | 40.0% | |
| AGAGGAAGTTGACAGATCAT+TGG | - | chr4.1:22788018-22788037 | MS.gene26571:CDS | 40.0% | |
| ATCAGAGTCTGTATCAGCAA+AGG | + | chr4.1:22787163-22787182 | None:intergenic | 40.0% | |
| ATGAATGAACACGCAAAGAG+CGG | + | chr4.1:22787793-22787812 | None:intergenic | 40.0% | |
| CAAAGTCCTACAAATTCTGC+TGG | - | chr4.1:22789017-22789036 | MS.gene26571:intron | 40.0% | |
| CACATACTTCTCTGAATTGG+GGG | + | chr4.1:22788410-22788429 | None:intergenic | 40.0% | |
| CAGTATATGAAAAAGGACCC+TGG | - | chr4.1:22787354-22787373 | MS.gene26571:intron | 40.0% | |
| CTTGTGACTTGAAAATGGCA+AGG | + | chr4.1:22788210-22788229 | None:intergenic | 40.0% | |
| GACCGACCAGTATATGAAAA+AGG | - | chr4.1:22787347-22787366 | MS.gene26571:intron | 40.0% | |
| GCACATCACCATGAAGAATA+AGG | + | chr4.1:22788983-22789002 | None:intergenic | 40.0% | |
| GTAAGGCGAAAATGAGAAGA+CGG | - | chr4.1:22788237-22788256 | MS.gene26571:intron | 40.0% | |
| TAACTGGGGACTCTTATCTA+AGG | + | chr4.1:22787452-22787471 | None:intergenic | 40.0% | |
| TGAACTTCAGGAGGTGAAAA+TGG | - | chr4.1:22789752-22789771 | MS.gene26571:CDS | 40.0% | |
| TGCTAATCGTCAATTGATGG+CGG | - | chr4.1:22787855-22787874 | MS.gene26571:CDS | 40.0% | |
| TGTTCTGATGCATGAACTTC+AGG | - | chr4.1:22789740-22789759 | MS.gene26571:CDS | 40.0% | |
| TGTTGGATCTACCAAAAACG+AGG | - | chr4.1:22787110-22787129 | MS.gene26571:CDS | 40.0% | |
| ! | ATTGTGAGTTGGACGAACAA+GGG | - | chr4.1:22787084-22787103 | MS.gene26571:CDS | 40.0% |
| ! | GAAGTGGATTCAGAGTTCTT+TGG | - | chr4.1:22787213-22787232 | MS.gene26571:CDS | 40.0% |
| ! | TATTGTGAGTTGGACGAACA+AGG | - | chr4.1:22787083-22787102 | MS.gene26571:CDS | 40.0% |
| !! | CAGGACCAAAAGTATCATGA+GGG | + | chr4.1:22787257-22787276 | None:intergenic | 40.0% |
| !! | CAGGGTCCTTTTTCATATAC+TGG | + | chr4.1:22787356-22787375 | None:intergenic | 40.0% |
| !! | GCAAGCAGTTGGTAACAATA+AGG | + | chr4.1:22788388-22788407 | None:intergenic | 40.0% |
| !! | TCAGGACCAAAAGTATCATG+AGG | + | chr4.1:22787258-22787277 | None:intergenic | 40.0% |
| !! | TGACATTGATGATGCACAGA+TGG | - | chr4.1:22789710-22789729 | MS.gene26571:CDS | 40.0% |
| AAACTTCTTACGACTGGTGG+TGG | - | chr4.1:22789660-22789679 | MS.gene26571:intron | 45.0% | |
| AACAGACTCCACCTTAACGA+CGG | + | chr4.1:22787007-22787026 | None:intergenic | 45.0% | |
| AAGCTTGAAACACAGCTGTC+AGG | + | chr4.1:22789134-22789153 | None:intergenic | 45.0% | |
| AATGGATACACGGCATCTGT+TGG | - | chr4.1:22789041-22789060 | MS.gene26571:intron | 45.0% | |
| ACTCACATGTTCACCAGAGT+CGG | + | chr4.1:22789246-22789265 | None:intergenic | 45.0% | |
| ACTGATTATCAGGTTCCCCA+GGG | + | chr4.1:22789983-22790002 | None:intergenic | 45.0% | |
| AGAAGCTTCAGGAGGTGAAA+AGG | - | chr4.1:22789799-22789818 | MS.gene26571:CDS | 45.0% | |
| AGATAAGAGTCCCCAGTTAG+AGG | - | chr4.1:22787453-22787472 | MS.gene26571:intron | 45.0% | |
| ATTTCATCCGACCTCTGATG+TGG | - | chr4.1:22788045-22788064 | MS.gene26571:CDS | 45.0% | |
| CCATTCCCAGCAGAATTTGT+AGG | + | chr4.1:22789026-22789045 | None:intergenic | 45.0% | |
| CCTACAAATTCTGCTGGGAA+TGG | - | chr4.1:22789023-22789042 | MS.gene26571:intron | 45.0% | |
| CTCTGATGTGGCGTCTAAAA+TGG | - | chr4.1:22788057-22788076 | MS.gene26571:CDS | 45.0% | |
| GAAGCTTCAGGAGGTGAAAA+GGG | - | chr4.1:22789800-22789819 | MS.gene26571:CDS | 45.0% | |
| GACAGCTGTGTTTCAAGCTT+TGG | - | chr4.1:22789134-22789153 | MS.gene26571:intron | 45.0% | |
| GGAAGTTGACAGATCATTGG+AGG | - | chr4.1:22788021-22788040 | MS.gene26571:CDS | 45.0% | |
| GTGAAAAGGGAAGTGGAAGA+AGG | - | chr4.1:22789813-22789832 | MS.gene26571:CDS | 45.0% | |
| GTGTCAGTGCATTTGAGCAA+AGG | + | chr4.1:22788831-22788850 | None:intergenic | 45.0% | |
| TAGCAGCAAGGATACTAACC+CGG | + | chr4.1:22788509-22788528 | None:intergenic | 45.0% | |
| TCACGTCCAGAAATGTTTCG+AGG | - | chr4.1:22788934-22788953 | MS.gene26571:CDS | 45.0% | |
| TCAGGAGGTGAAAATGGAAG+TGG | - | chr4.1:22789758-22789777 | MS.gene26571:CDS | 45.0% | |
| TCTGATGCATGAACTTCAGG+AGG | - | chr4.1:22789743-22789762 | MS.gene26571:CDS | 45.0% | |
| TGACAAGGTAAAGCATACGG+CGG | - | chr4.1:22788145-22788164 | MS.gene26571:CDS | 45.0% | |
| TTCTGCTGGGAATGGATACA+CGG | - | chr4.1:22789031-22789050 | MS.gene26571:intron | 45.0% | |
| TTTCACCTCCTGAAGCTTCT+GGG | + | chr4.1:22789799-22789818 | None:intergenic | 45.0% | |
| ! | CATTTTAGACGCCACATCAG+AGG | + | chr4.1:22788059-22788078 | None:intergenic | 45.0% |
| ! | GCAAGCCCTCATGATACTTT+TGG | - | chr4.1:22787249-22787268 | MS.gene26571:CDS | 45.0% |
| ! | TTTTCACCTCCTGAAGCTTC+TGG | + | chr4.1:22789800-22789819 | None:intergenic | 45.0% |
| !! | TGAGAGCACTGTTGGTTTGT+TGG | - | chr4.1:22789184-22789203 | MS.gene26571:intron | 45.0% |
| !!! | TGATGCCACTTTTCAGTGTG+CGG | + | chr4.1:22788908-22788927 | None:intergenic | 45.0% |
| AAGACGGCGAAAGAAAGCTG+AGG | - | chr4.1:22788253-22788272 | MS.gene26571:intron | 50.0% | |
| ACAGACTCCACCTTAACGAC+GGG | + | chr4.1:22787006-22787025 | None:intergenic | 50.0% | |
| AGGGAGATCACTACTGCCAA+AGG | + | chr4.1:22788679-22788698 | None:intergenic | 50.0% | |
| AGTCACCTTGTTCGGAACTC+AGG | + | chr4.1:22787276-22787295 | None:intergenic | 50.0% | |
| ATGGGTGATGAACAGTTGGC+TGG | + | chr4.1:22787714-22787733 | None:intergenic | 50.0% | |
| CGGTCGCTAACAAATGTCCA+AGG | + | chr4.1:22787332-22787351 | None:intergenic | 50.0% | |
| CTGATTATCAGGTTCCCCAG+GGG | + | chr4.1:22789982-22790001 | None:intergenic | 50.0% | |
| GTCTGATGCTGATGGCTCTT+TGG | - | chr4.1:22788466-22788485 | MS.gene26571:intron | 50.0% | |
| GTTGGAACATGAAGTCCCCT+GGG | - | chr4.1:22789964-22789983 | MS.gene26571:CDS | 50.0% | |
| TACACGGCATCTGTTGGAGT+TGG | - | chr4.1:22789047-22789066 | MS.gene26571:intron | 50.0% | |
| TCAGGAGGTGAAAAGGGAAG+TGG | - | chr4.1:22789806-22789825 | MS.gene26571:CDS | 50.0% | |
| TGCTGATGTCACCCTCCAAT+CGG | - | chr4.1:22789211-22789230 | MS.gene26571:intron | 50.0% | |
| TGGACGAACAAGGGTGATGT+TGG | - | chr4.1:22787093-22787112 | MS.gene26571:CDS | 50.0% | |
| TTAGACGCCACATCAGAGGT+CGG | + | chr4.1:22788055-22788074 | None:intergenic | 50.0% | |
| TTGGAACATGAAGTCCCCTG+GGG | - | chr4.1:22789965-22789984 | MS.gene26571:CDS | 50.0% | |
| TTGGTCCTGAGTTCCGAACA+AGG | - | chr4.1:22787268-22787287 | MS.gene26571:intron | 50.0% | |
| ! | CACTGATTATCAGGTTCCCC+AGG | + | chr4.1:22789984-22790003 | None:intergenic | 50.0% |
| ! | TGCATCAGGGTCCTCGTTTT+TGG | + | chr4.1:22787124-22787143 | None:intergenic | 50.0% |
| !! | GTTCTGAAGGAGCAGCTCAA+AGG | + | chr4.1:22788862-22788881 | None:intergenic | 50.0% |
| AAGCGTGGAGAACGCAAAGC+TGG | - | chr4.1:22789933-22789952 | MS.gene26571:CDS | 55.0% | |
| ACCTCCTGAAGCTTCTGGGT+GGG | + | chr4.1:22789795-22789814 | None:intergenic | 55.0% | |
| ACGGCATCTGTTGGAGTTGG+AGG | - | chr4.1:22789050-22789069 | MS.gene26571:intron | 55.0% | |
| AGGGTCCGCACACTGAAAAG+TGG | - | chr4.1:22788900-22788919 | MS.gene26571:CDS | 55.0% | |
| CAATCCCACCCAGAAGCTTC+AGG | - | chr4.1:22789788-22789807 | MS.gene26571:CDS | 55.0% | |
| CTCCACCTTAACGACGGGAT+TGG | + | chr4.1:22787001-22787020 | None:intergenic | 55.0% | |
| CTGAATTGGGGGCAAGCAGT+TGG | + | chr4.1:22788399-22788418 | None:intergenic | 55.0% | |
| GGTTGGAACATGAAGTCCCC+TGG | - | chr4.1:22789963-22789982 | MS.gene26571:CDS | 55.0% | |
| TTCACCAGAGTCGGCAACCA+AGG | + | chr4.1:22789237-22789256 | None:intergenic | 55.0% | |
| ! | GAACGCAAAGCTGGTTCAGG+TGG | - | chr4.1:22789942-22789961 | MS.gene26571:CDS | 55.0% |
| ! | GCAAAGCTGGTTCAGGTGGT+TGG | - | chr4.1:22789946-22789965 | MS.gene26571:CDS | 55.0% |
| ! | GGAGAACGCAAAGCTGGTTC+AGG | - | chr4.1:22789939-22789958 | MS.gene26571:CDS | 55.0% |
| AGTCGGCAACCAAGGCCGAT+TGG | + | chr4.1:22789229-22789248 | None:intergenic | 60.0% | |
| CACCTCCTGAAGCTTCTGGG+TGG | + | chr4.1:22789796-22789815 | None:intergenic | 60.0% | |
| GGCAACCAAGGCCGATTGGA+GGG | + | chr4.1:22789225-22789244 | None:intergenic | 60.0% | |
| GGCCAATCCCGTCGTTAAGG+TGG | - | chr4.1:22786996-22787015 | MS.gene26571:CDS | 60.0% | |
| TCCCACCCAGAAGCTTCAGG+AGG | - | chr4.1:22789791-22789810 | MS.gene26571:CDS | 60.0% | |
| TGTCACCCTCCAATCGGCCT+TGG | - | chr4.1:22789217-22789236 | MS.gene26571:intron | 60.0% | |
| CGGCAACCAAGGCCGATTGG+AGG | + | chr4.1:22789226-22789245 | None:intergenic | 65.0% | |
| !! | TCGGCCTTGGTTGCCGACTC+TGG | - | chr4.1:22789230-22789249 | MS.gene26571:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 22786994 | 22790004 | 22786994 | ID=MS.gene26571 |
| chr4.1 | mRNA | 22786994 | 22790004 | 22786994 | ID=MS.gene26571.t1;Parent=MS.gene26571 |
| chr4.1 | exon | 22789709 | 22790004 | 22789709 | ID=MS.gene26571.t1.exon1;Parent=MS.gene26571.t1 |
| chr4.1 | CDS | 22789709 | 22790004 | 22789709 | ID=cds.MS.gene26571.t1;Parent=MS.gene26571.t1 |
| chr4.1 | exon | 22788669 | 22788982 | 22788669 | ID=MS.gene26571.t1.exon2;Parent=MS.gene26571.t1 |
| chr4.1 | CDS | 22788669 | 22788982 | 22788669 | ID=cds.MS.gene26571.t1;Parent=MS.gene26571.t1 |
| chr4.1 | exon | 22788489 | 22788542 | 22788489 | ID=MS.gene26571.t1.exon3;Parent=MS.gene26571.t1 |
| chr4.1 | CDS | 22788489 | 22788542 | 22788489 | ID=cds.MS.gene26571.t1;Parent=MS.gene26571.t1 |
| chr4.1 | exon | 22787739 | 22788217 | 22787739 | ID=MS.gene26571.t1.exon4;Parent=MS.gene26571.t1 |
| chr4.1 | CDS | 22787739 | 22788217 | 22787739 | ID=cds.MS.gene26571.t1;Parent=MS.gene26571.t1 |
| chr4.1 | exon | 22786994 | 22787269 | 22786994 | ID=MS.gene26571.t1.exon5;Parent=MS.gene26571.t1 |
| chr4.1 | CDS | 22786994 | 22787269 | 22786994 | ID=cds.MS.gene26571.t1;Parent=MS.gene26571.t1 |
| Gene Sequence |
| Protein sequence |
