Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26780.t1 | XP_003609880.1 | 98.4 | 625 | 5 | 2 | 1 | 621 | 1 | 624 | 0.00E+00 | 1230.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26780.t1 | Q54XC1 | 28.8 | 528 | 303 | 9 | 115 | 600 | 86 | 582 | 4.9e-58 | 227.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26780.t1 | G7JR10 | 98.4 | 625 | 5 | 2 | 1 | 621 | 1 | 624 | 0.0e+00 | 1230.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26780 | MS.gene014516 | PPI |
| MS.gene42341 | MS.gene26780 | PPI |
| MS.gene26780 | MS.gene064666 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26780.t1 | MTR_4g123980 | 98.400 | 625 | 5 | 2 | 1 | 621 | 1 | 624 | 0.0 | 1273 |
| MS.gene26780.t1 | MTR_4g123980 | 91.680 | 625 | 5 | 3 | 1 | 621 | 1 | 582 | 0.0 | 1165 |
| MS.gene26780.t1 | MTR_5g082530 | 31.599 | 519 | 296 | 14 | 118 | 599 | 10 | 506 | 3.73e-71 | 239 |
| MS.gene26780.t1 | MTR_3g111870 | 31.569 | 510 | 307 | 12 | 121 | 599 | 32 | 530 | 5.36e-70 | 237 |
| MS.gene26780.t1 | MTR_1g022260 | 31.648 | 534 | 314 | 12 | 104 | 599 | 93 | 613 | 4.83e-65 | 225 |
| MS.gene26780.t1 | MTR_4g129920 | 27.767 | 497 | 314 | 13 | 100 | 585 | 54 | 516 | 7.98e-45 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26780.t1 | AT5G48960 | 83.636 | 550 | 90 | 0 | 51 | 600 | 84 | 633 | 0.0 | 972 |
| MS.gene26780.t1 | AT1G75210 | 28.846 | 624 | 376 | 17 | 18 | 599 | 39 | 636 | 7.88e-70 | 238 |
| MS.gene26780.t1 | AT1G75210 | 30.292 | 548 | 320 | 15 | 93 | 599 | 7 | 533 | 1.14e-69 | 235 |
| MS.gene26780.t1 | AT1G75210 | 30.292 | 548 | 320 | 15 | 93 | 599 | 7 | 533 | 1.14e-69 | 235 |
| MS.gene26780.t1 | AT2G23890 | 27.655 | 499 | 312 | 16 | 100 | 585 | 65 | 527 | 1.33e-44 | 167 |
| MS.gene26780.t1 | AT2G23890 | 27.623 | 467 | 295 | 13 | 128 | 585 | 5 | 437 | 2.01e-44 | 165 |
| MS.gene26780.t1 | AT2G23890 | 26.718 | 524 | 310 | 16 | 100 | 585 | 65 | 552 | 2.50e-41 | 158 |
Find 173 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGAAAACCTTAAGAATA+TGG | 0.187472 | 8.2:+10241930 | MS.gene26780:CDS |
| TAGATTCCTTCCAAATGATA+TGG | 0.214715 | 8.2:+10243614 | MS.gene26780:CDS |
| AGAGTTACCTTTGGCACTTT+TGG | 0.268992 | 8.2:+10243427 | MS.gene26780:CDS |
| CTTGAACAGCTTGAGGCTTT+TGG | 0.288352 | 8.2:+10240340 | MS.gene26780:CDS |
| AGCTCGAGTAGATAACATTT+TGG | 0.302975 | 8.2:-10242179 | None:intergenic |
| CTCTCCATGTTCGCCGTTCA+CGG | 0.333540 | 8.2:+10240115 | MS.gene26780:CDS |
| CTTGGTCCCCTTGATTATAA+AGG | 0.336443 | 8.2:+10243137 | MS.gene26780:CDS |
| TGATTATAAAGGTCTTTATA+AGG | 0.336485 | 8.2:+10243148 | MS.gene26780:CDS |
| CGACAAAGTGTCAGAGGTTT+GGG | 0.340066 | 8.2:-10240205 | None:intergenic |
| TAAATTGTTCAGGTAATTAG+AGG | 0.342453 | 8.2:+10242079 | MS.gene26780:intron |
| GAAAGTCGGAGTTGGTAATA+AGG | 0.347407 | 8.2:-10243557 | None:intergenic |
| CAGGGAAGCCCATATTCTTA+AGG | 0.349883 | 8.2:-10241939 | None:intergenic |
| CATACATGGGGCTTGATGTT+TGG | 0.359037 | 8.2:-10243852 | None:intergenic |
| GACTGACATCGGTGTAAATA+TGG | 0.369410 | 8.2:-10246346 | None:intergenic |
| GCTAAAAGACTTGGGCATTC+CGG | 0.369918 | 8.2:+10240975 | MS.gene26780:CDS |
| TTCTGCAGGTGGTCTGTACT+CGG | 0.379962 | 8.2:+10246256 | MS.gene26780:intron |
| ACGACAAAGTGTCAGAGGTT+TGG | 0.381657 | 8.2:-10240206 | None:intergenic |
| TTGGTTAAAGCTGACCGATT+TGG | 0.384717 | 8.2:+10242130 | MS.gene26780:CDS |
| ATTTCAGATGGTTGACAGAT+TGG | 0.385670 | 8.2:+10243091 | MS.gene26780:intron |
| ATGCTGATATTTATACATCT+AGG | 0.395774 | 8.2:+10248107 | MS.gene26780:CDS |
| ATGGAAAACCTTAAGAATAT+GGG | 0.403651 | 8.2:+10241931 | MS.gene26780:CDS |
| ACGCTGTTCGCCATCGCAAA+TGG | 0.405032 | 8.2:-10246379 | None:intergenic |
| GGGCAAGTTGACATTGGTGG+TGG | 0.407756 | 8.2:-10240185 | None:intergenic |
| TCAAATGCAAGTCCATCAAC+AGG | 0.409972 | 8.2:-10241958 | None:intergenic |
| TATAAAGACCTTTATAATCA+AGG | 0.414164 | 8.2:-10243145 | None:intergenic |
| AATATGGGCTTCCCTGTTGA+TGG | 0.415915 | 8.2:+10241946 | MS.gene26780:CDS |
| TCCAATGCTGGAGGCGGATG+GGG | 0.419954 | 8.2:+10247726 | MS.gene26780:CDS |
| TTCTATCTCGCGCTGGACTG+TGG | 0.422171 | 8.2:+10247966 | MS.gene26780:CDS |
| TCTGCAGGTGGTCTGTACTC+GGG | 0.422238 | 8.2:+10246257 | MS.gene26780:intron |
| AGCTGAGTTGGTGATGGTGG+TGG | 0.422974 | 8.2:-10240152 | None:intergenic |
| TCTCGCCAACCCATATCATT+TGG | 0.423439 | 8.2:-10243624 | None:intergenic |
| CTTGATGTTTGGAAGAACTC+TGG | 0.428049 | 8.2:-10243841 | None:intergenic |
| TCCCCATCCGCCTCCAGCAT+TGG | 0.439169 | 8.2:-10247727 | None:intergenic |
| CTTCATGTATTTCCGCTCTC+AGG | 0.439716 | 8.2:+10248156 | MS.gene26780:CDS |
| TGTTATCTACTCGAGCTGTT+AGG | 0.441179 | 8.2:+10242185 | MS.gene26780:CDS |
| TCAGGCTCAACAAACTGTTC+AGG | 0.442004 | 8.2:-10243401 | None:intergenic |
| GTATTTCCGCTCTCAGGAAC+AGG | 0.444670 | 8.2:+10248162 | MS.gene26780:CDS |
| GCCAAAGGTAACTCTGGATC+AGG | 0.450953 | 8.2:-10243419 | None:intergenic |
| TGGCACACCTTTCAGGCTGT+TGG | 0.456364 | 8.2:+10243234 | MS.gene26780:intron |
| GCCTGATCCAGAGTTACCTT+TGG | 0.457074 | 8.2:+10243418 | MS.gene26780:CDS |
| GACGTACCATCACATTATAA+TGG | 0.458097 | 8.2:-10241554 | None:intergenic |
| CTGCAGGTGGTCTGTACTCG+GGG | 0.458291 | 8.2:+10246258 | MS.gene26780:intron |
| ATCACCTCGGCAACGAATCA+AGG | 0.462275 | 8.2:-10246587 | None:intergenic |
| AGATTCCTTCCAAATGATAT+GGG | 0.462351 | 8.2:+10243615 | MS.gene26780:CDS |
| CTGAGGTCAATTAGTGCCAT+TGG | 0.466336 | 8.2:+10241507 | MS.gene26780:CDS |
| GCCTGTCACTACTTCATACA+TGG | 0.467141 | 8.2:-10243866 | None:intergenic |
| CTCCAATGCTGGAGGCGGAT+GGG | 0.468100 | 8.2:+10247725 | MS.gene26780:CDS |
| GGGACCATACCGGCAGATCT+TGG | 0.471312 | 8.2:+10243119 | MS.gene26780:CDS |
| GGTAGAGCTTATAAATCAAA+AGG | 0.471884 | 8.2:+10246621 | MS.gene26780:CDS |
| AGACAAAGAGAGAGGGAACT+TGG | 0.471925 | 8.2:+10242111 | MS.gene26780:CDS |
| AGAGAACATATTACCAGATC+AGG | 0.473768 | 8.2:-10241982 | None:intergenic |
| CCGAGGTGATAGAGAATCAT+TGG | 0.475672 | 8.2:+10246600 | MS.gene26780:CDS |
| CTCTCTCTTTGTCTATCACA+AGG | 0.475712 | 8.2:-10242102 | None:intergenic |
| ATGGGGAGCTCTTCAATTCA+AGG | 0.475973 | 8.2:+10247743 | MS.gene26780:CDS |
| ACTTGCATTTGATCCTGATC+TGG | 0.476464 | 8.2:+10241969 | MS.gene26780:CDS |
| CGAGAAAATTGCTCCAATGC+TGG | 0.480613 | 8.2:+10247714 | MS.gene26780:CDS |
| ATAATCCACGTCACACTTGT+TGG | 0.481051 | 8.2:-10240281 | None:intergenic |
| TCTAATGCGTCCATGCTTCA+AGG | 0.486804 | 8.2:+10243894 | MS.gene26780:CDS |
| AGAAGATTTGCTAAAAGACT+TGG | 0.493046 | 8.2:+10240966 | MS.gene26780:CDS |
| ATAAAGACCTTTATAATCAA+GGG | 0.493255 | 8.2:-10243144 | None:intergenic |
| TAATCCACGTCACACTTGTT+GGG | 0.494358 | 8.2:-10240280 | None:intergenic |
| CCCATTGACTCTCCTTTCGC+AGG | 0.496558 | 8.2:-10242685 | None:intergenic |
| TCTATCTCGCGCTGGACTGT+GGG | 0.500080 | 8.2:+10247967 | MS.gene26780:CDS |
| TTTGGGCAAGTTGACATTGG+TGG | 0.500792 | 8.2:-10240188 | None:intergenic |
| GCGTGCTTATGACTATTGTA+TGG | 0.501991 | 8.2:+10241912 | MS.gene26780:CDS |
| ACCTGCGAAAGGAGAGTCAA+TGG | 0.503886 | 8.2:+10242684 | MS.gene26780:CDS |
| TCATGTTGAAGGTCGTCTTA+AGG | 0.505507 | 8.2:+10243275 | MS.gene26780:CDS |
| GGCAAGTTGACATTGGTGGT+GGG | 0.508123 | 8.2:-10240184 | None:intergenic |
| AAAAGTGCCAAAGGTAACTC+TGG | 0.509325 | 8.2:-10243425 | None:intergenic |
| GGACCAAAACTTACTTGAGC+AGG | 0.513923 | 8.2:-10246706 | None:intergenic |
| GCTGAGTTGGTGATGGTGGT+GGG | 0.520211 | 8.2:-10240151 | None:intergenic |
| ATAAATCAAAAGGAAGTTGT+GGG | 0.520344 | 8.2:+10246631 | MS.gene26780:CDS |
| TATAAATCAAAAGGAAGTTG+TGG | 0.521533 | 8.2:+10246630 | MS.gene26780:CDS |
| TGAAGGTCCGATCGAGGAAG+TGG | 0.522632 | 8.2:+10240921 | MS.gene26780:CDS |
| TTGTAGAGAACTTGAAGATG+AGG | 0.522798 | 8.2:+10246406 | MS.gene26780:CDS |
| GCTCCAATGCTGGAGGCGGA+TGG | 0.523158 | 8.2:+10247724 | MS.gene26780:CDS |
| TCCTTCCAAATGATATGGGT+TGG | 0.523213 | 8.2:+10243619 | MS.gene26780:CDS |
| TGCTGATATTTATACATCTA+GGG | 0.525292 | 8.2:+10248108 | MS.gene26780:CDS |
| CAAATGGTTGAAAATTCTCT+AGG | 0.528698 | 8.2:+10246290 | MS.gene26780:CDS |
| GGGACCAAGATCTGCCGGTA+TGG | 0.529438 | 8.2:-10243123 | None:intergenic |
| TGAAGCAGTGGCCTACATGC+AGG | 0.529942 | 8.2:+10242736 | MS.gene26780:CDS |
| CGAGGAAGTGGCTAGAATAG+AGG | 0.533529 | 8.2:+10240933 | MS.gene26780:CDS |
| ATTGGTGATGCTGCATTTGA+AGG | 0.535973 | 8.2:+10240904 | MS.gene26780:CDS |
| ATCCATGTTAGTTGCTGCAA+GGG | 0.537926 | 8.2:-10247635 | None:intergenic |
| GAAAATTCTCTAGGAATCCA+TGG | 0.541230 | 8.2:+10246299 | MS.gene26780:CDS |
| TCTCTTTAACCAACTTCGAC+TGG | 0.541444 | 8.2:+10246657 | MS.gene26780:CDS |
| TGTTAAGCTTGAACAGCTTG+AGG | 0.541724 | 8.2:+10240333 | MS.gene26780:CDS |
| CCAGGTTGAGCCTTGAAGCA+TGG | 0.541981 | 8.2:-10243904 | None:intergenic |
| GTTCTCTGTGTCTGAAGCAG+TGG | 0.543616 | 8.2:+10242724 | MS.gene26780:CDS |
| GAAAGCTGAGTTGGTGATGG+TGG | 0.544290 | 8.2:-10240155 | None:intergenic |
| TGCAATGGAAGTGAGATGTA+TGG | 0.544497 | 8.2:+10242647 | MS.gene26780:intron |
| CCATGCTTCAAGGCTCAACC+TGG | 0.546398 | 8.2:+10243904 | MS.gene26780:CDS |
| GACGCCGTGAACGGCGAACA+TGG | 0.546502 | 8.2:-10240119 | None:intergenic |
| TTTGCAGAGCCAGTCGAAGT+TGG | 0.547896 | 8.2:-10246666 | None:intergenic |
| TTTGTCTGTGTAGTGAAAGT+CGG | 0.549719 | 8.2:-10243571 | None:intergenic |
| AATTGCTCCAATGCTGGAGG+CGG | 0.551496 | 8.2:+10247720 | MS.gene26780:CDS |
| GACCACATCGACGCCGTGAA+CGG | 0.552605 | 8.2:-10240128 | None:intergenic |
| TGAGATGTATGGAAGAGAAC+TGG | 0.554032 | 8.2:+10242658 | MS.gene26780:CDS |
| TTATCTTGGTGAAAGCACTA+AGG | 0.555735 | 8.2:+10240300 | MS.gene26780:CDS |
| CGCCGTTCACGGCGTCGATG+TGG | 0.556998 | 8.2:+10240126 | MS.gene26780:CDS |
| CCATCACATTATAATGGACA+AGG | 0.557042 | 8.2:-10241548 | None:intergenic |
| ATTCTAGCCACTTCCTCGAT+CGG | 0.558857 | 8.2:-10240928 | None:intergenic |
| AATAATGAACTTTCTTCCAA+CGG | 0.564916 | 8.2:+10248330 | MS.gene26780:CDS |
| GAAGATTTGCTAAAAGACTT+GGG | 0.565532 | 8.2:+10240967 | MS.gene26780:CDS |
| CATACAAAATCTCATCTCCA+TGG | 0.565756 | 8.2:-10246316 | None:intergenic |
| TCAAGGGGACCAAGATCTGC+CGG | 0.568445 | 8.2:-10243128 | None:intergenic |
| CTGAGAGCGGAAATACATGA+AGG | 0.569482 | 8.2:-10248155 | None:intergenic |
| CCCATGTATGAAGTAGTGAC+AGG | 0.570886 | 8.2:+10243865 | MS.gene26780:CDS |
| TTCTGATCCAAAAGTGCCAA+AGG | 0.571904 | 8.2:-10243434 | None:intergenic |
| TGGGGATTTCTATCTCGCGC+TGG | 0.572308 | 8.2:+10247959 | MS.gene26780:CDS |
| CCTGCGAAAGGAGAGTCAAT+GGG | 0.572366 | 8.2:+10242685 | MS.gene26780:CDS |
| TAATTACCTGTTCCTGAGAG+CGG | 0.572727 | 8.2:-10248168 | None:intergenic |
| GACTTTAGATTGACTGACAT+CGG | 0.575353 | 8.2:-10246357 | None:intergenic |
| ATGGTTGACAGATTGGATGA+TGG | 0.575408 | 8.2:+10243098 | MS.gene26780:CDS |
| AAGTGTGACGTGGATTATCT+TGG | 0.576216 | 8.2:+10240286 | MS.gene26780:CDS |
| GACCCTTGCAGCAACTAACA+TGG | 0.577624 | 8.2:+10247633 | MS.gene26780:intron |
| ACGCGTGCAGAATATTCCAC+GGG | 0.578052 | 8.2:-10241475 | None:intergenic |
| CATCCATGTTAGTTGCTGCA+AGG | 0.578620 | 8.2:-10247636 | None:intergenic |
| GGCTAGAATAGAGGCTAGAG+AGG | 0.578970 | 8.2:+10240942 | MS.gene26780:CDS |
| TATCTTGGTGAAAGCACTAA+GGG | 0.583087 | 8.2:+10240301 | MS.gene26780:CDS |
| TGCAGGTGGTCTGTACTCGG+GGG | 0.584103 | 8.2:+10246259 | MS.gene26780:intron |
| GCACGCGTACGTTGAATCTG+AGG | 0.585348 | 8.2:+10241490 | MS.gene26780:CDS |
| GGGTGAATTTCTAGATGAAG+AGG | 0.586989 | 8.2:-10241454 | None:intergenic |
| CTGGAACTATAGGCTTGGGA+AGG | 0.587407 | 8.2:+10241889 | MS.gene26780:intron |
| CCTGTCACTACTTCATACAT+GGG | 0.592193 | 8.2:-10243865 | None:intergenic |
| GCCAACCCATATCATTTGGA+AGG | 0.592253 | 8.2:-10243620 | None:intergenic |
| ATTGGATGATGGGACCATAC+CGG | 0.592630 | 8.2:+10243109 | MS.gene26780:CDS |
| AGAACTGGTGGACCTGCGAA+AGG | 0.593804 | 8.2:+10242673 | MS.gene26780:CDS |
| TAAAGACCTTTATAATCAAG+GGG | 0.594282 | 8.2:-10243143 | None:intergenic |
| CCTTGTCCATTATAATGTGA+TGG | 0.594817 | 8.2:+10241548 | MS.gene26780:CDS |
| TGGTTGACAGATTGGATGAT+GGG | 0.595425 | 8.2:+10243099 | MS.gene26780:CDS |
| GGGTATTGTGAAAGCTGAGT+TGG | 0.596179 | 8.2:-10240164 | None:intergenic |
| ACCGTTGACTCTAAGTCCAT+CGG | 0.597098 | 8.2:+10240232 | MS.gene26780:CDS |
| TGTGTAGTGAAAGTCGGAGT+TGG | 0.598547 | 8.2:-10243565 | None:intergenic |
| TGGAACTATAGGCTTGGGAA+GGG | 0.601614 | 8.2:+10241890 | MS.gene26780:intron |
| TGTGAAAGCTGAGTTGGTGA+TGG | 0.602038 | 8.2:-10240158 | None:intergenic |
| AGGTTTGGGCAAGTTGACAT+TGG | 0.603601 | 8.2:-10240191 | None:intergenic |
| GGAGAAAACATCACCGCCGA+TGG | 0.604635 | 8.2:-10240248 | None:intergenic |
| GGTGAATTTCTAGATGAAGA+GGG | 0.605541 | 8.2:-10241453 | None:intergenic |
| AACTTCGACTGGCTCTGCAA+AGG | 0.608705 | 8.2:+10246668 | MS.gene26780:CDS |
| ATAGTCCATGTCATATCCAA+TGG | 0.613622 | 8.2:-10241523 | None:intergenic |
| CTGAGTTGGTGATGGTGGTG+GGG | 0.616961 | 8.2:-10240150 | None:intergenic |
| ACACTTGTTGGGAGGCGTGA+CGG | 0.618790 | 8.2:-10240269 | None:intergenic |
| GCCTCCTCACATGTATGCAA+CGG | 0.622993 | 8.2:+10240087 | None:intergenic |
| GTTGCAACATACCTGCATGT+AGG | 0.623453 | 8.2:-10242747 | None:intergenic |
| TACGCGTGCAGAATATTCCA+CGG | 0.624452 | 8.2:-10241476 | None:intergenic |
| TAGTGCCATTGGATATGACA+TGG | 0.626673 | 8.2:+10241518 | MS.gene26780:CDS |
| GCCGATGGACTTAGAGTCAA+CGG | 0.626921 | 8.2:-10240233 | None:intergenic |
| TATGAAGTAGTGACAGGCGA+GGG | 0.628014 | 8.2:+10243871 | MS.gene26780:CDS |
| AATCTAAAGTCCATTTGCGA+TGG | 0.631481 | 8.2:+10246369 | MS.gene26780:CDS |
| GCCTCCCAACAAGTGTGACG+TGG | 0.643903 | 8.2:+10240276 | MS.gene26780:CDS |
| TGCATTTGAAGGTCCGATCG+AGG | 0.645835 | 8.2:+10240915 | MS.gene26780:CDS |
| AGTGCCTTGATTCGTTGCCG+AGG | 0.647545 | 8.2:+10246583 | MS.gene26780:CDS |
| GAAAATTGCTCCAATGCTGG+AGG | 0.647752 | 8.2:+10247717 | MS.gene26780:CDS |
| TGAGAGCGGAAATACATGAA+GGG | 0.652149 | 8.2:-10248154 | None:intergenic |
| CTTGTGATAGACAAAGAGAG+AGG | 0.653071 | 8.2:+10242103 | MS.gene26780:CDS |
| TTGTGATAGACAAAGAGAGA+GGG | 0.657865 | 8.2:+10242104 | MS.gene26780:CDS |
| GTGAATTTCTAGATGAAGAG+GGG | 0.660916 | 8.2:-10241452 | None:intergenic |
| GTGCAACGACAAAGTGTCAG+AGG | 0.662199 | 8.2:-10240211 | None:intergenic |
| TCCACGTCACACTTGTTGGG+AGG | 0.666845 | 8.2:-10240277 | None:intergenic |
| TCATCTAGAAATTCACCCCG+TGG | 0.668363 | 8.2:+10241459 | MS.gene26780:CDS |
| GCAGGTGGTCTGTACTCGGG+GGG | 0.677124 | 8.2:+10246260 | MS.gene26780:intron |
| CCAATGATTCTCTATCACCT+CGG | 0.680632 | 8.2:-10246600 | None:intergenic |
| GTGTGTATGAATCGTGTGCG+AGG | 0.682093 | 8.2:-10248290 | None:intergenic |
| GTATGAAGTAGTGACAGGCG+AGG | 0.683636 | 8.2:+10243870 | MS.gene26780:CDS |
| CAAATGCAAGTCCATCAACA+GGG | 0.684639 | 8.2:-10241957 | None:intergenic |
| CTGTCACTACTTCATACATG+GGG | 0.689870 | 8.2:-10243864 | None:intergenic |
| GATGTATGGAAGAGAACTGG+TGG | 0.697320 | 8.2:+10242661 | MS.gene26780:CDS |
| CATCACATTATAATGGACAA+GGG | 0.698479 | 8.2:-10241547 | None:intergenic |
| ACTACACAGACAAAATGATG+AGG | 0.704274 | 8.2:+10243580 | MS.gene26780:CDS |
| CAAAACTTACTTGAGCAGGA+CGG | 0.709767 | 8.2:-10246702 | None:intergenic |
| GTTGACTCTAAGTCCATCGG+CGG | 0.736350 | 8.2:+10240235 | MS.gene26780:CDS |
| CGCGTGCAGAATATTCCACG+GGG | 0.772588 | 8.2:-10241474 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 10240097 | 10248371 | 10240097 | ID=MS.gene26780 |
| chr8.2 | mRNA | 10240097 | 10248371 | 10240097 | ID=MS.gene26780.t1;Parent=MS.gene26780 |
| chr8.2 | exon | 10240097 | 10240361 | 10240097 | ID=MS.gene26780.t1.exon1;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10240097 | 10240361 | 10240097 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10240902 | 10240996 | 10240902 | ID=MS.gene26780.t1.exon2;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10240902 | 10240996 | 10240902 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10241450 | 10241569 | 10241450 | ID=MS.gene26780.t1.exon3;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10241450 | 10241569 | 10241450 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10241901 | 10241990 | 10241901 | ID=MS.gene26780.t1.exon4;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10241901 | 10241990 | 10241901 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10242091 | 10242206 | 10242091 | ID=MS.gene26780.t1.exon5;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10242091 | 10242206 | 10242091 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10242658 | 10242757 | 10242658 | ID=MS.gene26780.t1.exon6;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10242658 | 10242757 | 10242658 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10243098 | 10243169 | 10243098 | ID=MS.gene26780.t1.exon7;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10243098 | 10243169 | 10243098 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10243249 | 10243296 | 10243249 | ID=MS.gene26780.t1.exon8;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10243249 | 10243296 | 10243249 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10243383 | 10243460 | 10243383 | ID=MS.gene26780.t1.exon9;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10243383 | 10243460 | 10243383 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10243540 | 10243659 | 10243540 | ID=MS.gene26780.t1.exon10;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10243540 | 10243659 | 10243540 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10243820 | 10243925 | 10243820 | ID=MS.gene26780.t1.exon11;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10243820 | 10243925 | 10243820 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10246264 | 10246427 | 10246264 | ID=MS.gene26780.t1.exon12;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10246264 | 10246427 | 10246264 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10246580 | 10246714 | 10246580 | ID=MS.gene26780.t1.exon13;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10246580 | 10246714 | 10246580 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10247634 | 10247764 | 10247634 | ID=MS.gene26780.t1.exon14;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10247634 | 10247764 | 10247634 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10247958 | 10248020 | 10247958 | ID=MS.gene26780.t1.exon15;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10247958 | 10248020 | 10247958 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10248105 | 10248183 | 10248105 | ID=MS.gene26780.t1.exon16;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10248105 | 10248183 | 10248105 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| chr8.2 | exon | 10248288 | 10248371 | 10248288 | ID=MS.gene26780.t1.exon17;Parent=MS.gene26780.t1 |
| chr8.2 | CDS | 10248288 | 10248371 | 10248288 | ID=cds.MS.gene26780.t1;Parent=MS.gene26780.t1 |
| Gene Sequence |
| Protein sequence |
