AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26781

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26781.t1 MTR_4g123970 96.584 322 10 1 1 321 1 322 0.0 648
MS.gene26781.t1 MTR_1g097390 28.421 285 143 11 23 267 67 330 5.36e-18 84.3
MS.gene26781.t1 MTR_2g005830 28.495 186 108 5 42 209 43 221 1.55e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26781.t1 AT3G06950 68.078 307 91 3 17 321 21 322 8.02e-153 431
MS.gene26781.t1 AT1G34150 29.482 251 132 8 45 268 94 326 1.26e-17 83.6
MS.gene26781.t1 AT1G09800 24.233 326 160 10 42 292 56 369 3.26e-14 73.2
MS.gene26781.t1 AT1G09800 24.233 326 160 10 42 292 56 369 3.26e-14 73.2

Find 74 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATTGTTCCACATATTT+TGG 0.121197 8.2:-10254965 MS.gene26781:CDS
TATTGAGTTTATACATATTA+TGG 0.228707 8.2:+10255452 None:intergenic
ACCGTTTAATTACGACAATT+TGG 0.242990 8.2:-10255644 MS.gene26781:CDS
AAAATATGTGGAACAATATT+AGG 0.254864 8.2:+10254967 None:intergenic
ACATATTATGGTAAGCAAAA+TGG 0.289437 8.2:+10255464 None:intergenic
CACTTATAGCCATCTTGGTT+GGG 0.298483 8.2:+10256961 None:intergenic
CCGATTTGATGTGAAAGAAA+TGG 0.378687 8.2:-10255320 MS.gene26781:intron
TCCTGCTTGCACCAACCAAC+TGG 0.392400 8.2:+10255801 None:intergenic
TCCAAATTGTCGTAATTAAA+CGG 0.394286 8.2:+10255643 None:intergenic
GATATGATTGCCTGCATAAC+GGG 0.394519 8.2:+10256912 None:intergenic
TGATGCAGGAGTCCATGCTT+GGG 0.401400 8.2:-10255777 MS.gene26781:CDS
GTCGCATTGTTGCTTCAGAT+TGG 0.418270 8.2:-10255006 MS.gene26781:CDS
AAAATATGCTTCACTGGATC+TGG 0.422038 8.2:+10255343 None:intergenic
CCACTTATAGCCATCTTGGT+TGG 0.431380 8.2:+10256960 None:intergenic
GAAGATTGAATACCATGTTT+CGG 0.438346 8.2:+10255097 None:intergenic
ATCTGGTACGCGATCATTGT+GGG 0.445378 8.2:+10255360 None:intergenic
AAGCAAAATGGCGCTGGAAC+GGG 0.448936 8.2:+10255476 None:intergenic
AGGGAAGTTGGAGATGGAAT+CGG 0.449511 8.2:+10257122 None:intergenic
GCGTGGAATTCAGCTGATGC+AGG 0.451298 8.2:+10255559 None:intergenic
CCATTTCTTTCACATCAAAT+CGG 0.454616 8.2:+10255320 None:intergenic
GGCGCCACTTATAGCCATCT+TGG 0.459785 8.2:+10256956 None:intergenic
CTGATGCAGGAGTCCATGCT+TGG 0.463793 8.2:-10255778 MS.gene26781:CDS
AATCGGAAAATATGCTTCAC+TGG 0.470992 8.2:+10255337 None:intergenic
TCTACGGCGCATTGTACAGT+AGG 0.472692 8.2:+10255866 None:intergenic
AGGAGTCCATGCTTGGGGTC+AGG 0.479875 8.2:-10255771 MS.gene26781:intron
TCCAGTTGGTTGGTGCAAGC+AGG 0.481534 8.2:-10255802 MS.gene26781:CDS
TACGATGGAACCCGTTATGC+AGG 0.483247 8.2:-10256922 MS.gene26781:intron
CATACAGAAAGAAGGGAAGT+TGG 0.491033 8.2:+10257110 None:intergenic
CAGCTAGAAGTTGAAGGCTC+GGG 0.495832 8.2:-10255138 MS.gene26781:CDS
GAATAGGCAGTGAAATGAGT+TGG 0.498812 8.2:-10257178 None:intergenic
CATTCATACATACAGAAAGA+AGG 0.507840 8.2:+10257102 None:intergenic
AATAGGCAGTGAAATGAGTT+GGG 0.520368 8.2:-10257177 None:intergenic
TATGGTAAGCAAAATGGCGC+TGG 0.522963 8.2:+10255470 None:intergenic
TTAGAGCAACAAAGCTTCAA+AGG 0.523117 8.2:-10255832 MS.gene26781:CDS
GCAGCTAGAAGTTGAAGGCT+CGG 0.527801 8.2:-10255139 MS.gene26781:CDS
GGGTTCCATCGTAAGACAAA+AGG 0.528252 8.2:+10256932 None:intergenic
AGTCACTTGTTGCCTCCACC+AGG 0.529491 8.2:-10254856 MS.gene26781:CDS
GGTGCAAGCAGGACTGATGC+AGG 0.533920 8.2:-10255791 MS.gene26781:CDS
GAAAGAAGGGAAGTTGGAGA+TGG 0.534216 8.2:+10257116 None:intergenic
AGCAACAAAGCTTCAAAGGA+AGG 0.536541 8.2:-10255828 MS.gene26781:CDS
TGATATGATTGCCTGCATAA+CGG 0.539705 8.2:+10256911 None:intergenic
TAAGCAAAATGGCGCTGGAA+CGG 0.543419 8.2:+10255475 None:intergenic
TTTGCAGGGCAACCTGGTGG+AGG 0.546040 8.2:+10254844 None:intergenic
CTACGGCGCATTGTACAGTA+GGG 0.547422 8.2:+10255867 None:intergenic
CATCAGCTGAATTCCACGCT+CGG 0.550432 8.2:-10255555 MS.gene26781:CDS
ATTCATACATACAGAAAGAA+GGG 0.552512 8.2:+10257103 None:intergenic
CCAACCAAGATGGCTATAAG+TGG 0.555642 8.2:-10256960 MS.gene26781:CDS
TTTGGAGAGTCGTGATCGCA+AGG 0.562237 8.2:-10254947 MS.gene26781:CDS
TCACGACTCTCCAAAATATG+TGG 0.564125 8.2:+10254955 None:intergenic
ATCTGACCTGACCCCAAGCA+TGG 0.568094 8.2:+10255765 None:intergenic
TATGTGGAACAATATTAGGA+GGG 0.569490 8.2:+10254971 None:intergenic
ATATGTGGAACAATATTAGG+AGG 0.574988 8.2:+10254970 None:intergenic
TTCCATCGTAAGACAAAAGG+AGG 0.577863 8.2:+10256935 None:intergenic
AGAGTTCACGCTGCTTTGAA+CGG 0.578649 8.2:-10255619 MS.gene26781:CDS
CGTGGAATTCAGCTGATGCA+GGG 0.588035 8.2:+10255560 None:intergenic
TCTCTAACTCGTATATCAGA+AGG 0.591774 8.2:+10255589 None:intergenic
GATCTGGTACGCGATCATTG+TGG 0.593882 8.2:+10255359 None:intergenic
AGGAAGGATCTCCAGTTGGT+TGG 0.596611 8.2:-10255812 MS.gene26781:CDS
GCGCTGGAACGGGTCCATGA+TGG 0.598181 8.2:+10255486 None:intergenic
TGCTATTATCTGCCACCACA+TGG 0.601083 8.2:-10254910 MS.gene26781:CDS
GAATTCTTCAAGTGATGTTG+TGG 0.605338 8.2:-10256992 MS.gene26781:CDS
GAAGTGAAGCCCAACCAAGA+TGG 0.606632 8.2:-10256970 MS.gene26781:CDS
ATTGTTGCTTCAGATTGGAA+AGG 0.610327 8.2:-10255001 MS.gene26781:CDS
GATTTACAGTGATACCATCA+TGG 0.611998 8.2:-10255500 MS.gene26781:CDS
TCATACCATAAGAAAATGCA+AGG 0.613094 8.2:-10254806 MS.gene26781:CDS
TCAAAGGAAGGATCTCCAGT+TGG 0.617658 8.2:-10255816 MS.gene26781:CDS
GATGCAGGAGTCCATGCTTG+GGG 0.645475 8.2:-10255776 MS.gene26781:CDS
TACGGCGCATTGTACAGTAG+GGG 0.655013 8.2:+10255868 None:intergenic
ATGTGGAACAATATTAGGAG+GGG 0.656496 8.2:+10254972 None:intergenic
AGCAGCAGCAACAACATCAG+TGG 0.661577 8.2:-10257150 MS.gene26781:CDS
GTATAGACAAGTCCGAAACA+TGG 0.664436 8.2:-10255109 MS.gene26781:intron
ACGGCGCATTGTACAGTAGG+GGG 0.692690 8.2:+10255869 None:intergenic
GAAACAAGACAAAGACCATG+TGG 0.703286 8.2:+10254895 None:intergenic
ACAAGACAAAGACCATGTGG+TGG 0.708267 8.2:+10254898 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAAAATAAGTATAGTAT+AGG - chr8.2:10255166-10255185 MS.gene26781:intron 15.0%
!! CCAAATATAAAAATCTAATA+TGG + chr8.2:10255314-10255333 None:intergenic 15.0%
!! CCTAATATAAAAATCTAATA+CGG + chr8.2:10255482-10255501 None:intergenic 15.0%
!! TATTGAGTTTATACATATTA+TGG + chr8.2:10256510-10256529 None:intergenic 15.0%
!!! CAACAATAACTTTTTTAATT+TGG + chr8.2:10256892-10256911 None:intergenic 15.0%
!!! CCATATTAGATTTTTATATT+TGG - chr8.2:10255311-10255330 MS.gene26781:intron 15.0%
!! AAAATATGTGGAACAATATT+AGG + chr8.2:10256995-10257014 None:intergenic 20.0%
!! TTTCAAAAAATAAACCAAGA+AGG + chr8.2:10256745-10256764 None:intergenic 20.0%
!!! CCGTATTAGATTTTTATATT+AGG - chr8.2:10255479-10255498 MS.gene26781:CDS 20.0%
!!! TAATATTGTTCCACATATTT+TGG - chr8.2:10256994-10257013 MS.gene26781:CDS 20.0%
!!! TCTAATTAAAGCTTTTTCTA+CGG + chr8.2:10256112-10256131 None:intergenic 20.0%
!!! TGTTTTTATTCATTAAATGC+TGG + chr8.2:10255991-10256010 None:intergenic 20.0%
! AAGTTTCGGATAAAAAAGAT+AGG + chr8.2:10255575-10255594 None:intergenic 25.0%
! ACATATTATGGTAAGCAAAA+TGG + chr8.2:10256498-10256517 None:intergenic 25.0%
! ATGCAATATGCAAGTAATAT+TGG + chr8.2:10255608-10255627 None:intergenic 25.0%
! ATTCATACATACAGAAAGAA+GGG + chr8.2:10254859-10254878 None:intergenic 25.0%
! TAAAAATACCAAATCCAAGT+TGG - chr8.2:10255847-10255866 MS.gene26781:CDS 25.0%
! TCCAAATTGTCGTAATTAAA+CGG + chr8.2:10256319-10256338 None:intergenic 25.0%
! TGCAATATGCAAGTAATATT+GGG + chr8.2:10255607-10255626 None:intergenic 25.0%
! TTATAACTTATTGTGACTGT+AGG - chr8.2:10256276-10256295 MS.gene26781:intron 25.0%
!! AAGCTGCAAGATATTTTATT+GGG - chr8.2:10256545-10256564 MS.gene26781:intron 25.0%
!! ATATATCTGTTTGCATTTTC+AGG - chr8.2:10256931-10256950 MS.gene26781:CDS 25.0%
!!! ACTTGGATTTGGTATTTTTA+AGG + chr8.2:10255847-10255866 None:intergenic 25.0%
!!! ATCTTTTTTATCCGAAACTT+AGG - chr8.2:10255575-10255594 MS.gene26781:CDS 25.0%
!!! TTTTTCTCCATTATTTTGAC+TGG - chr8.2:10256034-10256053 MS.gene26781:intron 25.0%
AAAATCTAATACGGTATCTG+AGG + chr8.2:10255473-10255492 None:intergenic 30.0%
ACCGTTTAATTACGACAATT+TGG - chr8.2:10256315-10256334 MS.gene26781:intron 30.0%
AGAAGAGAAAGAGAAAAAAG+AGG + chr8.2:10254902-10254921 None:intergenic 30.0%
ATAGTATAGGCTCTTAATGT+TGG - chr8.2:10255179-10255198 MS.gene26781:intron 30.0%
ATATGTGGAACAATATTAGG+AGG + chr8.2:10256992-10257011 None:intergenic 30.0%
CACTCTTTATGAACTCTTAT+TGG - chr8.2:10255377-10255396 MS.gene26781:CDS 30.0%
CATTCATACATACAGAAAGA+AGG + chr8.2:10254860-10254879 None:intergenic 30.0%
CCATTTCTTTCACATCAAAT+CGG + chr8.2:10256642-10256661 None:intergenic 30.0%
GAAAACTACACCTTTCTATA+TGG + chr8.2:10255969-10255988 None:intergenic 30.0%
GAAGAGAAAGAGAAAAAAGA+GGG + chr8.2:10254901-10254920 None:intergenic 30.0%
GAAGATTGAATACCATGTTT+CGG + chr8.2:10256865-10256884 None:intergenic 30.0%
GAATGAATGAAAAGAGAAGA+AGG + chr8.2:10255076-10255095 None:intergenic 30.0%
GCATTTCTCTCAAAGTAAAT+AGG + chr8.2:10255706-10255725 None:intergenic 30.0%
GGTGCATGTATATAAATAGT+GGG - chr8.2:10255432-10255451 MS.gene26781:CDS 30.0%
TAATAATGTTCACAGCAGTA+CGG + chr8.2:10256692-10256711 None:intergenic 30.0%
TATGTGGAACAATATTAGGA+GGG + chr8.2:10256991-10257010 None:intergenic 30.0%
TCATACCATAAGAAAATGCA+AGG - chr8.2:10257153-10257172 MS.gene26781:CDS 30.0%
TGGTGCATGTATATAAATAG+TGG - chr8.2:10255431-10255450 MS.gene26781:CDS 30.0%
TTACCATGTTTATACCTTCT+TGG - chr8.2:10256728-10256747 MS.gene26781:intron 30.0%
TTGGGAAAAAACCTAAGTTT+CGG + chr8.2:10255589-10255608 None:intergenic 30.0%
! AAACCAAGAAGGTATAAACA+TGG + chr8.2:10256734-10256753 None:intergenic 30.0%
! GAAGCTGCAAGATATTTTAT+TGG - chr8.2:10256544-10256563 MS.gene26781:intron 30.0%
! TACAACCTTGCATTTTCTTA+TGG + chr8.2:10257161-10257180 None:intergenic 30.0%
!! AAAATGGTGTCACAAACTTA+AGG + chr8.2:10255775-10255794 None:intergenic 30.0%
!! ATTTTGAGCTTTATCCAACT+TGG + chr8.2:10255864-10255883 None:intergenic 30.0%
!! GGGATTTGGTATTCTTTTTA+TGG + chr8.2:10255930-10255949 None:intergenic 30.0%
AAAACGACTTGTAAGGTAAG+GGG - chr8.2:10255519-10255538 MS.gene26781:CDS 35.0%
AAAATATGCTTCACTGGATC+TGG + chr8.2:10256619-10256638 None:intergenic 35.0%
AATCGGAAAATATGCTTCAC+TGG + chr8.2:10256625-10256644 None:intergenic 35.0%
AATCTCACGTTCAATGCTAT+TGG - chr8.2:10255405-10255424 MS.gene26781:CDS 35.0%
ACAGTCACCAGTCAAAATAA+TGG + chr8.2:10256044-10256063 None:intergenic 35.0%
ATCTCACGTTCAATGCTATT+GGG - chr8.2:10255406-10255425 MS.gene26781:CDS 35.0%
ATGTGGAACAATATTAGGAG+GGG + chr8.2:10256990-10257009 None:intergenic 35.0%
CTTTACGAAAACGACTTGTA+AGG - chr8.2:10255512-10255531 MS.gene26781:CDS 35.0%
GAAAACGACTTGTAAGGTAA+GGG - chr8.2:10255518-10255537 MS.gene26781:CDS 35.0%
GAATTCTTCAAGTGATGTTG+TGG - chr8.2:10254967-10254986 MS.gene26781:CDS 35.0%
GACTCTTGATCCATATAGAA+AGG - chr8.2:10255956-10255975 MS.gene26781:intron 35.0%
GATTTACAGTGATACCATCA+TGG - chr8.2:10256459-10256478 MS.gene26781:intron 35.0%
TCTCAAACATTGTAACCATG+AGG - chr8.2:10255656-10255675 MS.gene26781:CDS 35.0%
TCTCTAACTCGTATATCAGA+AGG + chr8.2:10256373-10256392 None:intergenic 35.0%
TGATATGATTGCCTGCATAA+CGG + chr8.2:10255051-10255070 None:intergenic 35.0%
TTAGAGCAACAAAGCTTCAA+AGG - chr8.2:10256127-10256146 MS.gene26781:intron 35.0%
! AGCTTTATCCAACTTGGATT+TGG + chr8.2:10255858-10255877 None:intergenic 35.0%
! ATTGTTGCTTCAGATTGGAA+AGG - chr8.2:10256958-10256977 MS.gene26781:CDS 35.0%
! CCGATTTGATGTGAAAGAAA+TGG - chr8.2:10256639-10256658 MS.gene26781:intron 35.0%
! TGAATGAAGTTTTCAGCTTG+AGG - chr8.2:10255894-10255913 MS.gene26781:intron 35.0%
!! TTTGTGACACCATTTTTGTG+AGG - chr8.2:10255779-10255798 MS.gene26781:CDS 35.0%
AAAACCGTCTTGTGACTTGA+GGG - chr8.2:10255350-10255369 MS.gene26781:CDS 40.0%
AAGCTGAAATTGCGCACAAA+AGG + chr8.2:10256229-10256248 None:intergenic 40.0%
AGCAACAAAGCTTCAAAGGA+AGG - chr8.2:10256131-10256150 MS.gene26781:intron 40.0%
ATGGATCAAGAGTCAAAGCA+GGG + chr8.2:10255950-10255969 None:intergenic 40.0%
CACGTCAATATCAATGTGCA+GGG - chr8.2:10256788-10256807 MS.gene26781:intron 40.0%
CACTTATAGCCATCTTGGTT+GGG + chr8.2:10255001-10255020 None:intergenic 40.0%
CAGACAATGCCTCACAAAAA+TGG + chr8.2:10255791-10255810 None:intergenic 40.0%
CATACAGAAAGAAGGGAAGT+TGG + chr8.2:10254852-10254871 None:intergenic 40.0%
CGAAAACGACTTGTAAGGTA+AGG - chr8.2:10255517-10255536 MS.gene26781:CDS 40.0%
GAAACAAGACAAAGACCATG+TGG + chr8.2:10257067-10257086 None:intergenic 40.0%
GATATGATTGCCTGCATAAC+GGG + chr8.2:10255050-10255069 None:intergenic 40.0%
GTATAGACAAGTCCGAAACA+TGG - chr8.2:10256850-10256869 MS.gene26781:intron 40.0%
GTTGGAGATACTCACTTGTA+AGG - chr8.2:10255197-10255216 MS.gene26781:intron 40.0%
TATGGATCAAGAGTCAAAGC+AGG + chr8.2:10255951-10255970 None:intergenic 40.0%
TCACGACTCTCCAAAATATG+TGG + chr8.2:10257007-10257026 None:intergenic 40.0%
TCACGTCAATATCAATGTGC+AGG - chr8.2:10256787-10256806 MS.gene26781:intron 40.0%
TCTTATCGCTTCAACACCAT+TGG - chr8.2:10255237-10255256 MS.gene26781:intron 40.0%
TGATACGAATCAGAACCTCA+TGG + chr8.2:10255674-10255693 None:intergenic 40.0%
TGGTATTCGAGCTTACCAAT+CGG + chr8.2:10255294-10255313 None:intergenic 40.0%
TTCCATCGTAAGACAAAAGG+AGG + chr8.2:10255027-10255046 None:intergenic 40.0%
! AGCTTTCAAGTGGCAAACAT+TGG - chr8.2:10256244-10256263 MS.gene26781:intron 40.0%
! CTTTTGCAGCTAGAAGTTGA+AGG - chr8.2:10256815-10256834 MS.gene26781:intron 40.0%
! TTTGACTGGTGACTGTTTTC+AGG - chr8.2:10256048-10256067 MS.gene26781:intron 40.0%
!! ACTTGGTGCGTGTGTATAAA+CGG - chr8.2:10255260-10255279 MS.gene26781:intron 40.0%
!! AGTCACAAGACGGTTTTGTA+AGG + chr8.2:10255347-10255366 None:intergenic 40.0%
!! TGGTGTCACAAACTTAAGGT+TGG + chr8.2:10255771-10255790 None:intergenic 40.0%
AAACCGTCTTGTGACTTGAG+GGG - chr8.2:10255351-10255370 MS.gene26781:CDS 45.0%
ACAAGACAAAGACCATGTGG+TGG + chr8.2:10257064-10257083 None:intergenic 45.0%
ACGTTCAATGCTATTGGGCT+TGG - chr8.2:10255411-10255430 MS.gene26781:CDS 45.0%
AGGGAAGTTGGAGATGGAAT+CGG + chr8.2:10254840-10254859 None:intergenic 45.0%
ATCTGGTACGCGATCATTGT+GGG + chr8.2:10256602-10256621 None:intergenic 45.0%
CAAAACCGTCTTGTGACTTG+AGG - chr8.2:10255349-10255368 MS.gene26781:CDS 45.0%
CAAGAGTCAAAGCAGGGATT+TGG + chr8.2:10255944-10255963 None:intergenic 45.0%
CCAACCAAGATGGCTATAAG+TGG - chr8.2:10254999-10255018 MS.gene26781:CDS 45.0%
CCACTTATAGCCATCTTGGT+TGG + chr8.2:10255002-10255021 None:intergenic 45.0%
GAAAGAAGGGAAGTTGGAGA+TGG + chr8.2:10254846-10254865 None:intergenic 45.0%
GCGCAATTTCAGCTTTCAAG+TGG - chr8.2:10256234-10256253 MS.gene26781:intron 45.0%
GGGTTCCATCGTAAGACAAA+AGG + chr8.2:10255030-10255049 None:intergenic 45.0%
GGTATTCGAGCTTACCAATC+GGG + chr8.2:10255293-10255312 None:intergenic 45.0%
TATGGTAAGCAAAATGGCGC+TGG + chr8.2:10256492-10256511 None:intergenic 45.0%
TCAAAGGAAGGATCTCCAGT+TGG - chr8.2:10256143-10256162 MS.gene26781:intron 45.0%
TCACTTGTAAGGTGAGAGAG+AGG - chr8.2:10255208-10255227 MS.gene26781:intron 45.0%
TGCTATTATCTGCCACCACA+TGG - chr8.2:10257049-10257068 MS.gene26781:intron 45.0%
! AGAGTTCACGCTGCTTTGAA+CGG - chr8.2:10256340-10256359 MS.gene26781:intron 45.0%
! GCATGCCAGAACTTTTTGCA+GGG + chr8.2:10257132-10257151 None:intergenic 45.0%
! GTCGCATTGTTGCTTCAGAT+TGG - chr8.2:10256953-10256972 MS.gene26781:CDS 45.0%
! TAAGCAAAATGGCGCTGGAA+CGG + chr8.2:10256487-10256506 None:intergenic 45.0%
! TGCATGCCAGAACTTTTTGC+AGG + chr8.2:10257133-10257152 None:intergenic 45.0%
! TTTTTGCAGAAAACCGAGCG+TGG + chr8.2:10256420-10256439 None:intergenic 45.0%
!! CGGTTTTGTAAGGACGAGTT+TGG + chr8.2:10255337-10255356 None:intergenic 45.0%
!! GTTTTCAGGCTGGCAATATC+AGG - chr8.2:10256062-10256081 MS.gene26781:intron 45.0%
ACACCCCTCAAGTCACAAGA+CGG + chr8.2:10255357-10255376 None:intergenic 50.0%
AGCAGCAGCAACAACATCAG+TGG - chr8.2:10254809-10254828 MS.gene26781:CDS 50.0%
AGGAAGGATCTCCAGTTGGT+TGG - chr8.2:10256147-10256166 MS.gene26781:intron 50.0%
CAGCTAGAAGTTGAAGGCTC+GGG - chr8.2:10256821-10256840 MS.gene26781:intron 50.0%
CATCAGCTGAATTCCACGCT+CGG - chr8.2:10256404-10256423 MS.gene26781:intron 50.0%
CGCTTCAACACCATTGGACT+TGG - chr8.2:10255243-10255262 MS.gene26781:intron 50.0%
CGTGGAATTCAGCTGATGCA+GGG + chr8.2:10256402-10256421 None:intergenic 50.0%
CTACGGCGCATTGTACAGTA+GGG + chr8.2:10256095-10256114 None:intergenic 50.0%
GAAGTGAAGCCCAACCAAGA+TGG - chr8.2:10254989-10255008 MS.gene26781:CDS 50.0%
GATCTGGTACGCGATCATTG+TGG + chr8.2:10256603-10256622 None:intergenic 50.0%
GCAGCTAGAAGTTGAAGGCT+CGG - chr8.2:10256820-10256839 MS.gene26781:intron 50.0%
GCGTGTGTATAAACGGTTGG+TGG - chr8.2:10255267-10255286 MS.gene26781:intron 50.0%
GGTGCGTGTGTATAAACGGT+TGG - chr8.2:10255264-10255283 MS.gene26781:intron 50.0%
GGTTGCCCTGCAAAAAGTTC+TGG - chr8.2:10257124-10257143 MS.gene26781:CDS 50.0%
TACACACGCACCAAGTCCAA+TGG + chr8.2:10255256-10255275 None:intergenic 50.0%
TACGATGGAACCCGTTATGC+AGG - chr8.2:10255037-10255056 MS.gene26781:intron 50.0%
TACGGCGCATTGTACAGTAG+GGG + chr8.2:10256094-10256113 None:intergenic 50.0%
TCTACGGCGCATTGTACAGT+AGG + chr8.2:10256096-10256115 None:intergenic 50.0%
TGATGCAGGAGTCCATGCTT+GGG - chr8.2:10256182-10256201 MS.gene26781:intron 50.0%
TTTGGAGAGTCGTGATCGCA+AGG - chr8.2:10257012-10257031 MS.gene26781:intron 50.0%
! AAGCAAAATGGCGCTGGAAC+GGG + chr8.2:10256486-10256505 None:intergenic 50.0%
! CGCCTCCTTTTGTCTTACGA+TGG - chr8.2:10255022-10255041 MS.gene26781:intron 50.0%
! CGGTATCTGAGGCTATCGAT+CGG + chr8.2:10255462-10255481 None:intergenic 50.0%
! GAACTTTTTGCAGGGCAACC+TGG + chr8.2:10257124-10257143 None:intergenic 50.0%
! GGTATCTGAGGCTATCGATC+GGG + chr8.2:10255461-10255480 None:intergenic 50.0%
!! ACTGGTGACTGTTTTCAGGC+TGG - chr8.2:10256052-10256071 MS.gene26781:intron 50.0%
ACGGCGCATTGTACAGTAGG+GGG + chr8.2:10256093-10256112 None:intergenic 55.0%
ATCTGACCTGACCCCAAGCA+TGG + chr8.2:10256197-10256216 None:intergenic 55.0%
CTGATGCAGGAGTCCATGCT+TGG - chr8.2:10256181-10256200 MS.gene26781:intron 55.0%
GATGCAGGAGTCCATGCTTG+GGG - chr8.2:10256183-10256202 MS.gene26781:intron 55.0%
GCGTGGAATTCAGCTGATGC+AGG + chr8.2:10256403-10256422 None:intergenic 55.0%
GGCGCCACTTATAGCCATCT+TGG + chr8.2:10255006-10255025 None:intergenic 55.0%
TCCTGCTTGCACCAACCAAC+TGG + chr8.2:10256161-10256180 None:intergenic 55.0%
! AGTCACTTGTTGCCTCCACC+AGG - chr8.2:10257103-10257122 MS.gene26781:intron 55.0%
! CTTTTTGCAGGGCAACCTGG+TGG + chr8.2:10257121-10257140 None:intergenic 55.0%
! TCCAGTTGGTTGGTGCAAGC+AGG - chr8.2:10256157-10256176 MS.gene26781:intron 55.0%
!! TAAACGGTTGGTGGCCCGAT+TGG - chr8.2:10255276-10255295 MS.gene26781:intron 55.0%
AGGAGTCCATGCTTGGGGTC+AGG - chr8.2:10256188-10256207 MS.gene26781:intron 60.0%
GGTGCAAGCAGGACTGATGC+AGG - chr8.2:10256168-10256187 MS.gene26781:intron 60.0%
TTTGCAGGGCAACCTGGTGG+AGG + chr8.2:10257118-10257137 None:intergenic 60.0%
GCGCTGGAACGGGTCCATGA+TGG + chr8.2:10256476-10256495 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 10254795 10257186 10254795 ID=MS.gene26781
chr8.2 mRNA 10254795 10257186 10254795 ID=MS.gene26781.t1;Parent=MS.gene26781
chr8.2 exon 10257115 10257186 10257115 ID=MS.gene26781.t1.exon1;Parent=MS.gene26781.t1
chr8.2 CDS 10257115 10257186 10257115 ID=cds.MS.gene26781.t1;Parent=MS.gene26781.t1
chr8.2 exon 10256923 10257016 10256923 ID=MS.gene26781.t1.exon2;Parent=MS.gene26781.t1
chr8.2 CDS 10256923 10257016 10256923 ID=cds.MS.gene26781.t1;Parent=MS.gene26781.t1
chr8.2 exon 10255772 10255911 10255772 ID=MS.gene26781.t1.exon3;Parent=MS.gene26781.t1
chr8.2 CDS 10255772 10255911 10255772 ID=cds.MS.gene26781.t1;Parent=MS.gene26781.t1
chr8.2 exon 10255321 10255683 10255321 ID=MS.gene26781.t1.exon4;Parent=MS.gene26781.t1
chr8.2 CDS 10255321 10255683 10255321 ID=cds.MS.gene26781.t1;Parent=MS.gene26781.t1
chr8.2 exon 10255110 10255172 10255110 ID=MS.gene26781.t1.exon5;Parent=MS.gene26781.t1
chr8.2 CDS 10255110 10255172 10255110 ID=cds.MS.gene26781.t1;Parent=MS.gene26781.t1
chr8.2 exon 10254795 10255028 10254795 ID=MS.gene26781.t1.exon6;Parent=MS.gene26781.t1
chr8.2 CDS 10254795 10255028 10254795 ID=cds.MS.gene26781.t1;Parent=MS.gene26781.t1
Gene Sequence

>MS.gene26781

ATGAGTTGGGCATTAGCAGCAGCAACAACATCAGTGGTTACTCCGATTCCATCTCCAACTTCCCTTCTTTCTGTATGTATGAATGAATGAATGAATGAATGAACCCTCTTTTTTCTCTTTCTCTTCTTCACTCTTTTTTCATCATAAGTATAACAGTTTGCTTTTTGTAGTTGAATTCTTCAAGTGATGTTGTGGAAGTGAAGCCCAACCAAGATGGCTATAAGTGGCGCCTCCTTTTGTCTTACGATGGAACCCGTTATGCAGGCAATCATATCATTCCTTCTTCTCTTTTCATTCATTCATTCATTCATTATCTGTTATGTTATTAATTATGTGCTTGTACTTTTCTAACACTCATTTCTTATAAAATCAACTAAAATAAGTATAGTATAGGCTCTTAATGTTGGAGATACTCACTTGTAAGGTGAGAGAGAGGTCTCACTCTTATCGCTTCAACACCATTGGACTTGGTGCGTGTGTATAAACGGTTGGTGGCCCGATTGGTAAGCTCGAATACCATATTAGATTTTTATATTTGGCCAAACTCGTCCTTACAAAACCGTCTTGTGACTTGAGGGGTGTCACTCTTTATGAACTCTTATTGGTATGCAATCTCACGTTCAATGCTATTGGGCTTGGTGCATGTATATAAATAGTGGGTAGCCCGATCGATAGCCTCAGATACCGTATTAGATTTTTATATTAGGATTAACTCGTCTTTACGAAAACGACTTGTAAGGTAAGGGGTGTCACTCTTTATAAACTCTTATCAAGAGTCCTATCTTTTTTATCCGAAACTTAGGTTTTTTCCCAATATTACTTGCATATTGCATATCTTCAACTTTCTGTTGCTTTCAATAATCTCAAACATTGTAACCATGAGGTTCTGATTCGTATCATTTGTTAGACCTATTTACTTTGAGAGAAATGCTTTTCTTTTTATGTTTTTTTTGCTCTCACTCTTGTTCTAAGTCCAACCTTAAGTTTGTGACACCATTTTTGTGAGGCATTGTCTGTTTTGAGTCTTATGTAAGCTCTCACGAGTTTGTCCTTAAAAATACCAAATCCAAGTTGGATAAAGCTCAAAATCTTAAACTATTGAATGAAGTTTTCAGCTTGAGGTCATAGTGTGCCATAAAAAGAATACCAAATCCCTGCTTTGACTCTTGATCCATATAGAAAGGTGTAGTTTTCCAGCATTTAATGAATAAAAACATAAGTAAATAGTTGAATTCTTTCTTTTTCTCCATTATTTTGACTGGTGACTGTTTTCAGGCTGGCAATATCAGGAGTCTCCCCCTACTGTACAATGCGCCGTAGAAAAAGCTTTAATTAGAGCAACAAAGCTTCAAAGGAAGGATCTCCAGTTGGTTGGTGCAAGCAGGACTGATGCAGGAGTCCATGCTTGGGGTCAGGTCAGATCTTGTAATTCCTTTTGTGCGCAATTTCAGCTTTCAAGTGGCAAACATTGGATTGAAATTTTATAACTTATTGTGACTGTAGGTTGCACATTTTCATACACCGTTTAATTACGACAATTTGGATAGAGTTCACGCTGCTTTGAACGGTCTTCTTCCTTCTGATATACGAGTTAGAGAGATCAGCCCTGCATCAGCTGAATTCCACGCTCGGTTTTCTGCAAAAAGTAAGATTTATCATTACAAGATTTACAGTGATACCATCATGGACCCGTTCCAGCGCCATTTTGCTTACCATAATATGTATAAACTCAATAGTGCTGCTATGAGAGAAGCTGCAAGATATTTTATTGGGAAGCATGATTTCACTGCTTTTGAAAATGCATCCCACAATGATCGCGTACCAGATCCAGTGAAGCATATTTTCCGATTTGATGTGAAAGAAATGGTACTTAGAGTTCATATTTAAAGTTTTTCCGTACTGCTGTGAACATTATTAGTATTTTGCATTAAATTTACCATGTTTATACCTTCTTGGTTTATTTTTTGAAAACTAAGAATACTCTAATGCTGATCACGTCAATATCAATGTGCAGGGAGCTCTTTTGCAGCTAGAAGTTGAAGGCTCGGGTTTCTTGTATAGACAAGTCCGAAACATGGTATTCAATCTTCTGTGCCAAATTAAAAAAGTTATTGTTGTATAGTTGATAGCAATGACATATATCTGTTTGCATTTTCAGGTCGCATTGTTGCTTCAGATTGGAAAGGAAGCAACCCCTCCTAATATTGTTCCACATATTTTGGAGAGTCGTGATCGCAAGGAGCTTGCAAAATACTGCTATTATCTGCCACCACATGGTCTTTGTCTTGTTTCTATTAACTATAATGAAAGTCACTTGTTGCCTCCACCAGGTTGCCCTGCAAAAAGTTCTGGCATGCATCATACCATAAGAAAATGCAAGGTTGTATTCTAA
Protein sequence

>MS.gene26781.t1

MSWALAAATTSVVTPIPSPTSLLSLNSSSDVVEVKPNQDGYKWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVAHFHTPFNYDNLDRVHAALNGLLPSDIRVREISPASAEFHARFSAKSKIYHYKIYSDTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPNIVPHILESRDRKELAKYCYYLPPHGLCLVSINYNESHLLPPPGCPAKSSGMHHTIRKCKVVF