AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26798

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26798.t1 MTR_4g123750 96.899 258 8 0 1 258 54 311 0.0 526
MS.gene26798.t1 MTR_8g006190 37.638 271 150 4 1 254 24 292 5.12e-54 180
MS.gene26798.t1 MTR_8g006190 37.638 271 150 4 1 254 16 284 5.55e-54 180
MS.gene26798.t1 MTR_5g086700 31.915 141 92 2 116 255 54 191 4.90e-17 80.9
MS.gene26798.t1 MTR_5g086700 35.922 103 59 3 1 103 93 188 1.84e-11 64.3
MS.gene26798.t1 MTR_5g086700 31.915 141 92 2 116 255 54 191 4.99e-17 80.9
MS.gene26798.t1 MTR_5g086700 35.922 103 59 3 1 103 93 188 1.90e-11 64.3
MS.gene26798.t1 MTR_3g079840 33.582 134 85 2 123 255 56 186 1.33e-16 79.7
MS.gene26798.t1 MTR_3g079840 34.483 116 65 4 1 112 88 196 2.50e-11 63.9
MS.gene26798.t1 MTR_3g079840 33.582 134 85 2 123 255 57 187 1.35e-16 79.7
MS.gene26798.t1 MTR_3g079840 34.483 116 65 4 1 112 89 197 2.43e-11 63.9
MS.gene26798.t1 MTR_4g123790 73.810 42 11 0 111 152 12 53 1.12e-15 71.2
MS.gene26798.t1 MTR_1g041240 25.946 185 127 5 76 255 8 187 3.18e-13 69.7
MS.gene26798.t1 MTR_1g041240 25.405 185 129 4 76 255 8 188 4.32e-13 69.3
MS.gene26798.t1 MTR_1g041240 28.671 143 97 3 114 255 48 186 5.50e-13 68.9
MS.gene26798.t1 MTR_5g091450 30.000 130 88 2 121 249 31 158 1.12e-12 67.8
MS.gene26798.t1 MTR_5g091450 33.333 99 60 2 1 99 65 157 2.12e-11 63.9
MS.gene26798.t1 MTR_5g091180 30.370 135 89 4 117 249 40 171 2.67e-12 66.6
MS.gene26798.t1 MTR_5g091550 29.921 127 85 2 124 249 20 143 8.82e-12 65.1
MS.gene26798.t1 MTR_5g091550 29.921 127 85 2 124 249 20 143 9.28e-12 65.1
MS.gene26798.t1 MTR_1g042160 24.793 121 86 2 1 121 45 160 2.59e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26798.t1 AT3G17380 50.195 257 125 1 1 257 56 309 1.08e-87 263
MS.gene26798.t1 AT3G17380 31.034 145 95 3 111 250 9 153 3.10e-11 62.8
MS.gene26798.t1 AT5G26260 31.660 259 172 3 1 258 96 350 4.38e-37 134
MS.gene26798.t1 AT5G26280 30.116 259 176 3 1 258 95 349 1.86e-35 129
MS.gene26798.t1 AT5G26280 30.116 259 176 3 1 258 114 368 2.73e-35 129
MS.gene26798.t1 AT5G26290 29.845 258 171 3 1 258 88 335 1.00e-31 119
MS.gene26798.t1 AT2G04170 29.388 245 168 3 14 257 56 296 2.91e-31 117
MS.gene26798.t1 AT2G04170 29.388 245 168 3 14 257 56 296 2.91e-31 117
MS.gene26798.t1 AT4G09780 33.591 259 156 9 2 256 99 345 8.47e-31 118
MS.gene26798.t1 AT2G04170 29.388 245 168 3 14 257 138 378 1.43e-30 117
MS.gene26798.t1 AT2G04170 29.388 245 168 3 14 257 178 418 2.60e-30 117
MS.gene26798.t1 AT2G04170 29.388 245 168 3 14 257 178 418 2.60e-30 117
MS.gene26798.t1 AT5G26300 28.571 259 179 4 1 258 95 348 2.90e-30 116
MS.gene26798.t1 AT3G20370 30.078 256 167 6 1 251 101 349 4.19e-30 115
MS.gene26798.t1 AT3G20370 30.078 256 167 6 1 251 123 371 5.14e-30 115
MS.gene26798.t1 AT4G09770 31.660 259 160 9 2 256 46 291 4.02e-29 112
MS.gene26798.t1 AT4G09770 31.660 259 160 9 2 256 46 291 4.02e-29 112
MS.gene26798.t1 AT4G09770 31.660 259 160 9 2 256 72 317 5.85e-29 112
MS.gene26798.t1 AT4G09780 32.090 268 159 8 2 256 99 356 8.82e-29 113
MS.gene26798.t1 AT3G20360 29.545 264 173 7 1 257 104 361 1.01e-28 112
MS.gene26798.t1 AT3G28220 30.522 249 163 6 1 247 118 358 1.12e-28 112
MS.gene26798.t1 AT5G26280 28.512 242 168 3 18 258 89 326 1.71e-28 110
MS.gene26798.t1 AT3G22080 28.627 255 171 6 1 252 59 305 2.27e-28 110
MS.gene26798.t1 AT1G69650 27.863 262 158 8 1 254 50 288 2.38e-28 109
MS.gene26798.t1 AT1G65370 29.258 229 146 6 25 251 7 221 6.43e-26 101
MS.gene26798.t1 AT2G04170 31.746 189 125 2 14 202 178 362 1.12e-25 103
MS.gene26798.t1 AT2G04190 28.077 260 178 5 1 257 156 409 1.18e-25 104
MS.gene26798.t1 AT4G09770 33.333 204 122 7 2 202 46 238 2.43e-25 100
MS.gene26798.t1 AT4G09770 33.333 204 122 7 2 202 72 264 3.23e-25 101
MS.gene26798.t1 AT5G26320 26.316 247 177 3 13 258 109 351 2.32e-24 100
MS.gene26798.t1 AT1G69660 26.872 227 159 4 29 254 5 225 1.18e-23 95.9
MS.gene26798.t1 AT2G15710 28.692 237 152 6 1 234 132 354 2.76e-22 94.7
MS.gene26798.t1 AT2G32870 25.758 264 174 5 8 257 161 416 2.90e-21 92.4
MS.gene26798.t1 AT1G58270 27.600 250 163 8 14 258 147 383 6.91e-21 91.3
MS.gene26798.t1 AT3G22085 28.054 221 135 6 1 219 52 250 2.57e-20 88.2
MS.gene26798.t1 AT4G00780 27.519 258 166 8 1 254 56 296 3.22e-20 88.2
MS.gene26798.t1 AT3G20380 23.387 248 184 3 1 248 123 364 4.29e-20 88.6
MS.gene26798.t1 AT1G65150 29.279 222 140 7 1 219 50 257 5.07e-20 87.4
MS.gene26798.t1 AT1G65150 29.279 222 140 7 1 219 50 257 5.07e-20 87.4
MS.gene26798.t1 AT4G01390 26.592 267 156 8 1 253 56 296 1.38e-19 86.3
MS.gene26798.t1 AT2G04170 35.714 140 86 2 14 153 178 313 2.65e-19 85.9
MS.gene26798.t1 AT2G32880 25.856 263 171 8 11 257 64 318 9.31e-17 78.6
MS.gene26798.t1 AT3G58340 33.103 145 89 3 116 257 1 140 7.35e-16 76.3
MS.gene26798.t1 AT3G58340 33.103 145 89 3 116 257 1 140 8.66e-16 76.3
MS.gene26798.t1 AT3G46190 25.296 253 149 6 1 251 70 284 2.01e-15 74.7
MS.gene26798.t1 AT5G06600 32.143 140 91 2 117 255 49 185 2.17e-15 76.3
MS.gene26798.t1 AT5G06600 34.951 103 60 3 1 103 87 182 4.83e-11 63.2
MS.gene26798.t1 AT5G06600 32.143 140 91 2 117 255 50 186 2.26e-15 75.9
MS.gene26798.t1 AT5G06600 34.951 103 60 3 1 103 88 183 4.92e-11 63.2
MS.gene26798.t1 AT2G32870 27.451 204 131 4 8 202 161 356 2.45e-15 75.1
MS.gene26798.t1 AT5G06600 32.143 140 91 2 117 255 50 186 2.61e-15 75.9
MS.gene26798.t1 AT5G06600 35.644 101 58 3 1 101 88 181 4.50e-11 63.2
MS.gene26798.t1 AT3G46190 25.296 253 149 6 1 251 90 304 2.69e-15 74.7
MS.gene26798.t1 AT3G58210 32.168 143 95 2 116 257 1 142 5.24e-15 73.9
MS.gene26798.t1 AT3G11910 31.429 140 92 2 117 255 49 185 6.45e-15 74.7
MS.gene26798.t1 AT3G11910 33.010 103 62 3 1 103 87 182 7.39e-11 62.8
MS.gene26798.t1 AT3G11910 31.429 140 92 2 117 255 49 185 6.45e-15 74.7
MS.gene26798.t1 AT3G11910 33.010 103 62 3 1 103 87 182 7.39e-11 62.8
MS.gene26798.t1 AT3G11910 31.429 140 92 2 117 255 48 184 6.76e-15 74.7
MS.gene26798.t1 AT3G11910 33.010 103 62 3 1 103 86 181 7.59e-11 62.4
MS.gene26798.t1 AT3G11910 31.429 140 92 2 117 255 48 184 6.76e-15 74.7
MS.gene26798.t1 AT3G11910 33.010 103 62 3 1 103 86 181 7.59e-11 62.4
MS.gene26798.t1 AT2G32880 27.586 203 128 6 11 202 64 258 4.47e-14 70.9
MS.gene26798.t1 AT3G58370 32.192 146 94 2 115 257 1 144 3.48e-13 68.6
MS.gene26798.t1 AT1G31390 32.540 126 80 2 116 238 1 124 3.99e-13 67.8
MS.gene26798.t1 AT3G58410 30.769 143 94 2 116 258 1 138 9.97e-13 67.4
MS.gene26798.t1 AT3G58360 31.724 145 91 3 116 257 1 140 1.17e-12 67.0
MS.gene26798.t1 AT2G05420 32.374 139 87 3 125 257 11 148 5.47e-12 65.1
MS.gene26798.t1 AT1G31400 31.690 142 89 3 116 254 1 137 1.75e-11 63.2
MS.gene26798.t1 AT3G58250 30.935 139 90 3 123 258 10 145 5.76e-11 62.0
MS.gene26798.t1 AT3G58350 28.986 138 93 2 123 257 8 143 8.91e-11 61.6
MS.gene26798.t1 AT3G58350 28.986 138 93 2 123 257 8 143 8.91e-11 61.6

Find 59 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTCTGTGCATATATTT+TGG 0.140548 8.2:+10413926 None:intergenic
GTCTACTTGCAGCTAATTAT+TGG 0.237931 8.2:-10413695 MS.gene26798:intron
GATGTTGAGGTTACAGTTCT+TGG 0.266368 8.2:-10413570 MS.gene26798:CDS
TTTAATAGATGATGTGAAAA+AGG 0.278698 8.2:-10414447 MS.gene26798:intron
TCCTCTCAAGGATTTCAATC+TGG 0.293183 8.2:-10414375 MS.gene26798:CDS
AGCAATCCAAGCATCAGTTT+TGG 0.342021 8.2:-10413884 MS.gene26798:CDS
AATCTCCCATACATGCTTGT+AGG 0.374747 8.2:+10414238 None:intergenic
CCCTCCCCTACAAGCATGTA+TGG 0.374887 8.2:-10414244 MS.gene26798:CDS
GATTAAAGACTTCTCAAAGT+TGG 0.382721 8.2:-10414219 MS.gene26798:CDS
CTGTTGGGTTAGCTAAAGTT+AGG 0.387750 8.2:+10413964 None:intergenic
ATTACTGCACAAAATAAATC+TGG 0.389938 8.2:+10413641 None:intergenic
AGACTTCTCAAAGTTGGATT+CGG 0.407331 8.2:-10414213 MS.gene26798:CDS
GGATCATATTTCACTATACT+TGG 0.407706 8.2:-10414695 MS.gene26798:CDS
TTGTAGTTTCCAACATTGAA+TGG 0.413486 8.2:+10414173 None:intergenic
TTCACAGAATGAAGGTTGAA+TGG 0.418718 8.2:-10414415 MS.gene26798:CDS
GTGGATGATATATGTGCATT+TGG 0.423766 8.2:-10414335 MS.gene26798:CDS
TCACAGAATGAAGGTTGAAT+GGG 0.425550 8.2:-10414414 MS.gene26798:CDS
CCTCTCAAGGATTTCAATCT+GGG 0.426272 8.2:-10414374 MS.gene26798:CDS
GAGCAGAAGTCTTTGTTTGT+AGG 0.431985 8.2:-10414313 MS.gene26798:CDS
ACCTTTCCAAAACTGATGCT+TGG 0.443667 8.2:+10413878 None:intergenic
ATCTCCCATACATGCTTGTA+GGG 0.444436 8.2:+10414239 None:intergenic
AGCAGAAGTCTTTGTTTGTA+GGG 0.457138 8.2:-10414312 MS.gene26798:CDS
GTAAAGTACCTTGGAGAACT+AGG 0.458919 8.2:+10414584 None:intergenic
GATTTCAATCTGGGCTCTAA+AGG 0.459503 8.2:-10414365 MS.gene26798:CDS
AAGCTCACTTCATCCTGGTT+GGG 0.466058 8.2:-10414659 MS.gene26798:CDS
TAATTTCACCAGTCAATACC+TGG 0.466177 8.2:-10413622 MS.gene26798:CDS
TATTTCACTATACTTGGCAT+TGG 0.479251 8.2:-10414689 MS.gene26798:CDS
TGATCAATTTATTCCTCTCA+AGG 0.485622 8.2:-10414387 MS.gene26798:CDS
CAAGCTCACTTCATCCTGGT+TGG 0.493535 8.2:-10414660 MS.gene26798:CDS
AAACTGTATCCCAAAGGAAA+AGG 0.507112 8.2:-10414017 MS.gene26798:CDS
AGAATCTTTGATCATGATGA+AGG 0.521528 8.2:-10414270 MS.gene26798:CDS
GACTCTAAGCCATTCAATGT+TGG 0.526449 8.2:-10414182 MS.gene26798:CDS
CATTTGCTTTGTAGATGTTG+AGG 0.531213 8.2:-10413583 MS.gene26798:CDS
AGGGAAAACTACACAGGTAA+AGG 0.536644 8.2:-10414293 MS.gene26798:CDS
CAAAGGAAAAGGTACTGACT+CGG 0.538845 8.2:-10414006 MS.gene26798:CDS
CCCATACATGCTTGTAGGGG+AGG 0.542077 8.2:+10414243 None:intergenic
TAGATACCCCAGGTATTGAC+TGG 0.568960 8.2:+10413614 None:intergenic
AAACAAAAGCAAGAATGTAA+AGG 0.570463 8.2:-10414716 MS.gene26798:CDS
GAATCAAGCTCACTTCATCC+TGG 0.576113 8.2:-10414664 MS.gene26798:CDS
CACAGAATGAAGGTTGAATG+GGG 0.578801 8.2:-10414413 MS.gene26798:CDS
CCATACATGCTTGTAGGGGA+GGG 0.581374 8.2:+10414244 None:intergenic
AAAGGAAAAGGTACTGACTC+GGG 0.585829 8.2:-10414005 MS.gene26798:CDS
GTTTGTAGGGAAAACTACAC+AGG 0.592836 8.2:-10414299 MS.gene26798:CDS
TTTACATAGATTTCCCAACC+AGG 0.601857 8.2:+10414646 None:intergenic
GGGCTCTAAAGGTTATCTAG+TGG 0.608318 8.2:-10414354 MS.gene26798:CDS
AATTTCACCAGTCAATACCT+GGG 0.612530 8.2:-10413621 MS.gene26798:CDS
CCTCCCCTACAAGCATGTAT+GGG 0.619373 8.2:-10414243 MS.gene26798:CDS
TGAGGTTACAGTTCTTGGAG+TGG 0.629632 8.2:-10413565 MS.gene26798:CDS
ATACCTGGGGTATCTAGTGA+AGG 0.632705 8.2:-10413607 MS.gene26798:CDS
CAGATAAAACTGTATCCCAA+AGG 0.633902 8.2:-10414023 MS.gene26798:CDS
TGTCCTTCACTAGATACCCC+AGG 0.633913 8.2:+10413604 None:intergenic
GACAACTACCTAGTTCTCCA+AGG 0.638057 8.2:-10414592 MS.gene26798:intron
CCCAGATTGAAATCCTTGAG+AGG 0.660903 8.2:+10414374 None:intergenic
TGTGCCATGTTCATGACTTG+AGG 0.660953 8.2:+10413665 None:intergenic
AAGTTAGTTATGTATCCAAG+TGG 0.687329 8.2:-10414739 None:intergenic
TCAATGTTGGAAACTACAAG+TGG 0.691657 8.2:-10414169 MS.gene26798:intron
TCTCCCATACATGCTTGTAG+GGG 0.699554 8.2:+10414240 None:intergenic
AGTGCCTCAAGTCATGAACA+TGG 0.700230 8.2:-10413669 MS.gene26798:CDS
ATTTCACCAGTCAATACCTG+GGG 0.717112 8.2:-10413620 MS.gene26798:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGCAATCCAAAAAAAAAATT+AGG + chr8.2:10413808-10413827 None:intergenic 20.0%
!! CAAAAAGTTATCATATAACT+TGG + chr8.2:10414231-10414250 None:intergenic 20.0%
!! TTTAATAGATGATGTGAAAA+AGG - chr8.2:10413831-10413850 MS.gene26798:intron 20.0%
!!! TTATTTAGTTTAGCAAGAAA+TGG + chr8.2:10414151-10414170 None:intergenic 20.0%
! AAAAAGATTTCACAGAATGA+AGG - chr8.2:10413855-10413874 MS.gene26798:intron 25.0%
! AAACAAAAGCAAGAATGTAA+AGG - chr8.2:10413562-10413581 MS.gene26798:CDS 25.0%
! ATTACTGCACAAAATAAATC+TGG + chr8.2:10414640-10414659 None:intergenic 25.0%
! TTAAACAGTTTAGTGTTTGA+CGG - chr8.2:10413779-10413798 MS.gene26798:intron 25.0%
! TTCAAACAATACTCTTTGAA+TGG + chr8.2:10414176-10414195 None:intergenic 25.0%
!! AAAAAAAAGGTAAAGTACCT+TGG + chr8.2:10413706-10413725 None:intergenic 25.0%
!! GTTATATGATAACTTTTTGC+AGG - chr8.2:10414232-10414251 MS.gene26798:CDS 25.0%
!! TATTGTCTGTGCATATATTT+TGG + chr8.2:10414355-10414374 None:intergenic 25.0%
AGAATCTTTGATCATGATGA+AGG - chr8.2:10414008-10414027 MS.gene26798:CDS 30.0%
GATTAAAGACTTCTCAAAGT+TGG - chr8.2:10414059-10414078 MS.gene26798:intron 30.0%
GGATCATATTTCACTATACT+TGG - chr8.2:10413583-10413602 MS.gene26798:CDS 30.0%
TATTTCACTATACTTGGCAT+TGG - chr8.2:10413589-10413608 MS.gene26798:CDS 30.0%
TGATCAATTTATTCCTCTCA+AGG - chr8.2:10413891-10413910 MS.gene26798:CDS 30.0%
TTGTAGTTTCCAACATTGAA+TGG + chr8.2:10414108-10414127 None:intergenic 30.0%
! AGATCGAAATCTATTTTCGA+GGG + chr8.2:10413757-10413776 None:intergenic 30.0%
! GTTACACTTTGTTGTGAAAT+TGG - chr8.2:10414430-10414449 MS.gene26798:CDS 30.0%
! TTTAGTTTAGCAAGAAATGG+AGG + chr8.2:10414148-10414167 None:intergenic 30.0%
!!! CGGTCTCCTAATTTTTTTTT+TGG - chr8.2:10413799-10413818 MS.gene26798:intron 30.0%
AAACTGTATCCCAAAGGAAA+AGG - chr8.2:10414261-10414280 MS.gene26798:CDS 35.0%
AATTTCACCAGTCAATACCT+GGG - chr8.2:10414657-10414676 MS.gene26798:CDS 35.0%
AGACTTCTCAAAGTTGGATT+CGG - chr8.2:10414065-10414084 MS.gene26798:intron 35.0%
CAGATAAAACTGTATCCCAA+AGG - chr8.2:10414255-10414274 MS.gene26798:CDS 35.0%
CATTTGCTTTGTAGATGTTG+AGG - chr8.2:10414695-10414714 MS.gene26798:CDS 35.0%
GTCTACTTGCAGCTAATTAT+TGG - chr8.2:10414583-10414602 MS.gene26798:intron 35.0%
GTGGATGATATATGTGCATT+TGG - chr8.2:10413943-10413962 MS.gene26798:CDS 35.0%
TAATTTCACCAGTCAATACC+TGG - chr8.2:10414656-10414675 MS.gene26798:CDS 35.0%
TCAATGTTGGAAACTACAAG+TGG - chr8.2:10414109-10414128 MS.gene26798:intron 35.0%
TCACAGAATGAAGGTTGAAT+GGG - chr8.2:10413864-10413883 MS.gene26798:intron 35.0%
TTCACAGAATGAAGGTTGAA+TGG - chr8.2:10413863-10413882 MS.gene26798:intron 35.0%
TTTACATAGATTTCCCAACC+AGG + chr8.2:10413635-10413654 None:intergenic 35.0%
! ACTTTGTTGTGAAATTGGTC+AGG - chr8.2:10414435-10414454 MS.gene26798:CDS 35.0%
! AGCAGAAGTCTTTGTTTGTA+GGG - chr8.2:10413966-10413985 MS.gene26798:CDS 35.0%
! CAGATCGAAATCTATTTTCG+AGG + chr8.2:10413758-10413777 None:intergenic 35.0%
! GAGTATTGTTTGAACTCAAC+AGG - chr8.2:10414182-10414201 MS.gene26798:CDS 35.0%
!! TTCTTGCTTTTGTTTCCACT+TGG + chr8.2:10413557-10413576 None:intergenic 35.0%
!!! CATTCAGCTGTCATTTTGTA+TGG + chr8.2:10414472-10414491 None:intergenic 35.0%
!!! GTGCATATATTTTGGAACCT+GGG + chr8.2:10414347-10414366 None:intergenic 35.0%
!!! TGCATATATTTTGGAACCTG+GGG + chr8.2:10414346-10414365 None:intergenic 35.0%
!!! TGTGCATATATTTTGGAACC+TGG + chr8.2:10414348-10414367 None:intergenic 35.0%
AATCTCCCATACATGCTTGT+AGG + chr8.2:10414043-10414062 None:intergenic 40.0%
ACCTTTCCAAAACTGATGCT+TGG + chr8.2:10414403-10414422 None:intergenic 40.0%
AGGGAAAACTACACAGGTAA+AGG - chr8.2:10413985-10414004 MS.gene26798:CDS 40.0%
ATCTCCCATACATGCTTGTA+GGG + chr8.2:10414042-10414061 None:intergenic 40.0%
ATTTCACCAGTCAATACCTG+GGG - chr8.2:10414658-10414677 MS.gene26798:CDS 40.0%
CACAGAATGAAGGTTGAATG+GGG - chr8.2:10413865-10413884 MS.gene26798:intron 40.0%
CCTCTCAAGGATTTCAATCT+GGG - chr8.2:10413904-10413923 MS.gene26798:CDS 40.0%
GACTCTAAGCCATTCAATGT+TGG - chr8.2:10414096-10414115 MS.gene26798:intron 40.0%
GATGTTGAGGTTACAGTTCT+TGG - chr8.2:10414708-10414727 MS.gene26798:CDS 40.0%
GTTTGTAGGGAAAACTACAC+AGG - chr8.2:10413979-10413998 MS.gene26798:CDS 40.0%
TCCTCTCAAGGATTTCAATC+TGG - chr8.2:10413903-10413922 MS.gene26798:CDS 40.0%
! AGCAATCCAAGCATCAGTTT+TGG - chr8.2:10414394-10414413 MS.gene26798:CDS 40.0%
! GAGCAGAAGTCTTTGTTTGT+AGG - chr8.2:10413965-10413984 MS.gene26798:CDS 40.0%
! GAGTCAGTACCTTTTCCTTT+GGG + chr8.2:10414273-10414292 None:intergenic 40.0%
! GATTTCAATCTGGGCTCTAA+AGG - chr8.2:10413913-10413932 MS.gene26798:CDS 40.0%
! GTAAAGTACCTTGGAGAACT+AGG + chr8.2:10413697-10413716 None:intergenic 40.0%
!! AAAGGAAAAGGTACTGACTC+GGG - chr8.2:10414273-10414292 MS.gene26798:CDS 40.0%
!! CAAAGGAAAAGGTACTGACT+CGG - chr8.2:10414272-10414291 MS.gene26798:CDS 40.0%
!! CTGTTGGGTTAGCTAAAGTT+AGG + chr8.2:10414317-10414336 None:intergenic 40.0%
!!! CATATATTTTGGAACCTGGG+GGG + chr8.2:10414344-10414363 None:intergenic 40.0%
!!! GCATATATTTTGGAACCTGG+GGG + chr8.2:10414345-10414364 None:intergenic 40.0%
!!! TCCAAGCATCAGTTTTGGAA+AGG - chr8.2:10414399-10414418 MS.gene26798:CDS 40.0%
AAGCTCACTTCATCCTGGTT+GGG - chr8.2:10413619-10413638 MS.gene26798:CDS 45.0%
AGTGCCTCAAGTCATGAACA+TGG - chr8.2:10414609-10414628 MS.gene26798:CDS 45.0%
CCCAGATTGAAATCCTTGAG+AGG + chr8.2:10413907-10413926 None:intergenic 45.0%
GAATCAAGCTCACTTCATCC+TGG - chr8.2:10413614-10413633 MS.gene26798:CDS 45.0%
TCTCCCATACATGCTTGTAG+GGG + chr8.2:10414041-10414060 None:intergenic 45.0%
TGAGGTTACAGTTCTTGGAG+TGG - chr8.2:10414713-10414732 MS.gene26798:CDS 45.0%
TGTGCCATGTTCATGACTTG+AGG + chr8.2:10414616-10414635 None:intergenic 45.0%
! ATACCTGGGGTATCTAGTGA+AGG - chr8.2:10414671-10414690 MS.gene26798:CDS 45.0%
! CGAGTCAGTACCTTTTCCTT+TGG + chr8.2:10414274-10414293 None:intergenic 45.0%
! GACAACTACCTAGTTCTCCA+AGG - chr8.2:10413686-10413705 MS.gene26798:CDS 45.0%
!! GGGCTCTAAAGGTTATCTAG+TGG - chr8.2:10413924-10413943 MS.gene26798:CDS 45.0%
!! TAGATACCCCAGGTATTGAC+TGG + chr8.2:10414667-10414686 None:intergenic 45.0%
!! TGAATATATATTAAAAAAAA+AGG + chr8.2:10413719-10413738 None:intergenic 5.0%
CAAGCTCACTTCATCCTGGT+TGG - chr8.2:10413618-10413637 MS.gene26798:CDS 50.0%
CCATACATGCTTGTAGGGGA+GGG + chr8.2:10414037-10414056 None:intergenic 50.0%
CCTCCCCTACAAGCATGTAT+GGG - chr8.2:10414035-10414054 MS.gene26798:intron 50.0%
TGTCCTTCACTAGATACCCC+AGG + chr8.2:10414677-10414696 None:intergenic 50.0%
CCCATACATGCTTGTAGGGG+AGG + chr8.2:10414038-10414057 None:intergenic 55.0%
CCCTCCCCTACAAGCATGTA+TGG - chr8.2:10414034-10414053 MS.gene26798:intron 55.0%
! AACCTGGGGGGATTGCTGTT+GGG + chr8.2:10414332-10414351 None:intergenic 55.0%
AACCCAACAGCAATCCCCCC+AGG - chr8.2:10414327-10414346 MS.gene26798:CDS 60.0%
GAACCTGGGGGGATTGCTGT+TGG + chr8.2:10414333-10414352 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 10413548 10414752 10413548 ID=MS.gene26798
chr8.2 mRNA 10413548 10414752 10413548 ID=MS.gene26798.t1;Parent=MS.gene26798
chr8.2 exon 10414593 10414752 10414593 ID=MS.gene26798.t1.exon1;Parent=MS.gene26798.t1
chr8.2 CDS 10414593 10414752 10414593 ID=cds.MS.gene26798.t1;Parent=MS.gene26798.t1
chr8.2 exon 10414170 10414461 10414170 ID=MS.gene26798.t1.exon2;Parent=MS.gene26798.t1
chr8.2 CDS 10414170 10414461 10414170 ID=cds.MS.gene26798.t1;Parent=MS.gene26798.t1
chr8.2 exon 10413880 10414046 10413880 ID=MS.gene26798.t1.exon3;Parent=MS.gene26798.t1
chr8.2 CDS 10413880 10414046 10413880 ID=cds.MS.gene26798.t1;Parent=MS.gene26798.t1
chr8.2 exon 10413548 10413705 10413548 ID=MS.gene26798.t1.exon4;Parent=MS.gene26798.t1
chr8.2 CDS 10413548 10413705 10413548 ID=cds.MS.gene26798.t1;Parent=MS.gene26798.t1
Gene Sequence

>MS.gene26798

ATGTATCCAAGTGGAAACAAAAGCAAGAATGTAAAGGATCATATTTCACTATACTTGGCATTGGAAGAATCAAGCTCACTTCATCCTGGTTGGGAAATCTATGTAAATTTTAAATTGTTTTTATATGATCACAACAATGACAACTACCTAGTTCTCCAAGGTACTTTACCTTTTTTTTTAATATATATTCACTTAACAATTAATTTCCCTCGAAAATAGATTTCGATCTGCTTAAACAGTTTAGTGTTTGACGGTCTCCTAATTTTTTTTTTGGATTGCTGCATTTAATAGATGATGTGAAAAAGGAAAAAAGATTTCACAGAATGAAGGTTGAATGGGGATTTGATCAATTTATTCCTCTCAAGGATTTCAATCTGGGCTCTAAAGGTTATCTAGTGGATGATATATGTGCATTTGGAGCAGAAGTCTTTGTTTGTAGGGAAAACTACACAGGTAAAGGAGAATCTTTGATCATGATGAAGGATGCCCTCCCCTACAAGCATGTATGGGAGATTAAAGACTTCTCAAAGTTGGATTCGGAGTGTTGTGACTCTAAGCCATTCAATGTTGGAAACTACAAGTGGTACAAATGCTTAACCTCCATTTCTTGCTAAACTAAATAACTCCATTCAAAGAGTATTGTTTGAACTCAACAGGAAATTTGACAACTTAGTAATTTACCAAGTTATATGATAACTTTTTGCAGGCAGATAAAACTGTATCCCAAAGGAAAAGGTACTGACTCGGGCAGATATCTTGCTCTGTACCTAACTTTAGCTAACCCAACAGCAATCCCCCCAGGTTCCAAAATATATGCACAGACAATATTACGCATACTTGATCAAAAGCAATCCAAGCATCAGTTTTGGAAAGGTAAAGTTTGTTACACTTTGTTGTGAAATTGGTCAGGCAAAATGCTAGCCATACAAAATGACAGCTGAATGAATAGTTAACGTTGAGAACAACATTTTTTGCATCTCTAAGAAAGCATAAACATAGATCTGATTTGATAATCAAAAGTTCTATTTTTTGTCTGTCTACTTGCAGCTAATTATTGGTTTAGTGCCTCAAGTCATGAACATGGCACATCCAGATTTATTTTGTGCAGTAATTTCACCAGTCAATACCTGGGGTATCTAGTGAAGGACATTTGCTTTGTAGATGTTGAGGTTACAGTTCTTGGAGTGGTTGATGCATTGTCTTGA
Protein sequence

>MS.gene26798.t1

MYPSGNKSKNVKDHISLYLALEESSSLHPGWEIYVNFKLFLYDHNNDNYLVLQDDVKKEKRFHRMKVEWGFDQFIPLKDFNLGSKGYLVDDICAFGAEVFVCRENYTGKGESLIMMKDALPYKHVWEIKDFSKLDSECCDSKPFNVGNYKWQIKLYPKGKGTDSGRYLALYLTLANPTAIPPGSKIYAQTILRILDQKQSKHQFWKANYWFSASSHEHGTSRFILCSNFTSQYLGYLVKDICFVDVEVTVLGVVDALS