Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26940.t1 | XP_013466065.1 | 99.6 | 252 | 1 | 0 | 1 | 252 | 1 | 252 | 1.90E-145 | 525 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26940.t1 | Q93VG8 | 61.9 | 147 | 56 | 0 | 42 | 188 | 26 | 172 | 2.2e-57 | 223.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26940.t1 | A0A072VDJ9 | 99.6 | 252 | 1 | 0 | 1 | 252 | 1 | 252 | 1.4e-145 | 525.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049695 | MS.gene26940 | 0.816429 | 5.56E-52 | -1.69E-46 |
| MS.gene059154 | MS.gene26940 | 0.810126 | 1.35E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26940.t1 | MTR_1g022015 | 99.603 | 252 | 1 | 0 | 1 | 252 | 1 | 252 | 0.0 | 521 |
| MS.gene26940.t1 | MTR_1g034490 | 70.000 | 240 | 67 | 2 | 1 | 240 | 1 | 235 | 1.25e-122 | 349 |
| MS.gene26940.t1 | MTR_1g013110 | 57.216 | 194 | 75 | 1 | 39 | 232 | 14 | 199 | 5.88e-81 | 242 |
| MS.gene26940.t1 | MTR_3g106240 | 64.024 | 164 | 59 | 0 | 39 | 202 | 14 | 177 | 3.67e-80 | 240 |
| MS.gene26940.t1 | MTR_4g100500 | 64.000 | 150 | 54 | 0 | 41 | 190 | 21 | 170 | 8.92e-74 | 224 |
| MS.gene26940.t1 | MTR_5g013040 | 62.162 | 148 | 56 | 0 | 41 | 188 | 22 | 169 | 9.97e-72 | 219 |
| MS.gene26940.t1 | MTR_4g008530 | 54.595 | 185 | 80 | 2 | 25 | 206 | 10 | 193 | 4.05e-69 | 213 |
| MS.gene26940.t1 | MTR_5g013040 | 60.811 | 148 | 55 | 1 | 41 | 188 | 22 | 166 | 2.05e-67 | 208 |
| MS.gene26940.t1 | MTR_4g113720 | 59.740 | 154 | 61 | 1 | 44 | 196 | 31 | 184 | 2.62e-67 | 208 |
| MS.gene26940.t1 | MTR_4g113720 | 59.740 | 154 | 61 | 1 | 44 | 196 | 31 | 184 | 2.64e-67 | 207 |
| MS.gene26940.t1 | MTR_2g054770 | 54.194 | 155 | 71 | 0 | 49 | 203 | 33 | 187 | 4.28e-65 | 202 |
| MS.gene26940.t1 | MTR_5g013040 | 54.167 | 144 | 59 | 2 | 46 | 188 | 20 | 157 | 5.46e-55 | 176 |
| MS.gene26940.t1 | MTR_1g100100 | 34.965 | 143 | 74 | 5 | 44 | 170 | 4 | 143 | 3.18e-18 | 81.3 |
| MS.gene26940.t1 | MTR_6g048290 | 33.103 | 145 | 81 | 4 | 42 | 171 | 2 | 145 | 1.82e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26940.t1 | AT1G47740 | 71.875 | 256 | 63 | 4 | 1 | 252 | 29 | 279 | 6.80e-127 | 361 |
| MS.gene26940.t1 | AT1G47740 | 71.875 | 256 | 63 | 4 | 1 | 252 | 29 | 279 | 6.80e-127 | 361 |
| MS.gene26940.t1 | AT1G47740 | 71.875 | 256 | 63 | 4 | 1 | 252 | 29 | 279 | 6.80e-127 | 361 |
| MS.gene26940.t1 | AT5G25170 | 63.855 | 166 | 58 | 1 | 39 | 202 | 15 | 180 | 4.94e-77 | 232 |
| MS.gene26940.t1 | AT1G80690 | 56.044 | 182 | 79 | 1 | 28 | 209 | 2 | 182 | 4.79e-74 | 225 |
| MS.gene26940.t1 | AT2G25190 | 60.736 | 163 | 64 | 0 | 40 | 202 | 15 | 177 | 2.33e-73 | 224 |
| MS.gene26940.t1 | AT5G47310 | 64.828 | 145 | 51 | 0 | 42 | 186 | 28 | 172 | 8.97e-73 | 223 |
| MS.gene26940.t1 | AT1G80690 | 54.839 | 186 | 79 | 2 | 28 | 209 | 2 | 186 | 4.64e-72 | 220 |
| MS.gene26940.t1 | AT4G17486 | 58.974 | 156 | 64 | 0 | 33 | 188 | 17 | 172 | 1.30e-71 | 219 |
| MS.gene26940.t1 | AT4G31980 | 59.756 | 164 | 58 | 2 | 27 | 187 | 7 | 165 | 2.17e-63 | 210 |
| MS.gene26940.t1 | AT4G17486 | 60.145 | 138 | 55 | 0 | 33 | 170 | 17 | 154 | 2.10e-62 | 194 |
| MS.gene26940.t1 | AT5G25170 | 58.519 | 135 | 54 | 1 | 70 | 202 | 2 | 136 | 2.61e-53 | 170 |
| MS.gene26940.t1 | AT4G25680 | 32.639 | 144 | 87 | 4 | 28 | 169 | 8 | 143 | 3.98e-16 | 75.9 |
| MS.gene26940.t1 | AT4G25660 | 32.639 | 144 | 87 | 4 | 28 | 169 | 8 | 143 | 9.45e-16 | 75.1 |
Find 55 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATAAACAGCCTCTTAA+AGG | 0.165224 | 1.3:-3048550 | None:intergenic |
| GAAGAAATTCTTAGTGCTTC+TGG | 0.179953 | 1.3:-3048397 | None:intergenic |
| ATTGTGCCTCTTCATTTAAA+AGG | 0.274662 | 1.3:+3047009 | MS.gene26940:CDS |
| GACATATGCTACAAGCTTAC+AGG | 0.302536 | 1.3:+3047723 | MS.gene26940:CDS |
| CTTTGAATCCTGTTCAGGTT+AGG | 0.313137 | 1.3:+3047619 | MS.gene26940:CDS |
| TACATCTTTGAATCCTGTTC+AGG | 0.336718 | 1.3:+3047614 | MS.gene26940:CDS |
| CTATCATGTGCCTCATGATT+AGG | 0.345697 | 1.3:-3048433 | None:intergenic |
| ATCTATTAACCGTTCCTTCA+AGG | 0.354021 | 1.3:+3048600 | MS.gene26940:CDS |
| CAATTCCAACTTGGGTAAAT+CGG | 0.354741 | 1.3:+3047751 | MS.gene26940:CDS |
| TCATACACATTAAGATAAAC+TGG | 0.373779 | 1.3:-3047102 | None:intergenic |
| CCAATACACATAACCATTCA+TGG | 0.376837 | 1.3:-3047133 | None:intergenic |
| TGTTCAGGTTAGGGAGTTCA+TGG | 0.381216 | 1.3:+3047629 | MS.gene26940:CDS |
| AAACAGTTACCTTTCCTTGA+AGG | 0.382205 | 1.3:-3048614 | None:intergenic |
| TTTGAATCCTGTTCAGGTTA+GGG | 0.385241 | 1.3:+3047620 | MS.gene26940:CDS |
| TTTCTACAATCACCTTTAAG+AGG | 0.386624 | 1.3:+3048538 | MS.gene26940:CDS |
| TTGTAGAAACAATGAAGATT+TGG | 0.406339 | 1.3:-3048524 | None:intergenic |
| CATGGTGTAGAATATGCATT+TGG | 0.412888 | 1.3:+3047501 | MS.gene26940:CDS |
| CAGGGAAATCAATTCCAACT+TGG | 0.414012 | 1.3:+3047742 | MS.gene26940:CDS |
| CATGAATGGTTATGTGTATT+GGG | 0.415496 | 1.3:+3047134 | MS.gene26940:CDS |
| TATGTGTATTGGGCCGGTCT+TGG | 0.423862 | 1.3:+3047144 | MS.gene26940:CDS |
| CCATGAATGGTTATGTGTAT+TGG | 0.424620 | 1.3:+3047133 | MS.gene26940:CDS |
| ATGAACTCCCTAACCTGAAC+AGG | 0.425276 | 1.3:-3047627 | None:intergenic |
| GCAAGCCGATTTACCCAAGT+TGG | 0.426198 | 1.3:-3047756 | None:intergenic |
| AATGCCCAGGCTTCAAGTTC+AGG | 0.427519 | 1.3:+3047571 | MS.gene26940:CDS |
| GACTTCCTGAACTTGAAGCC+TGG | 0.467872 | 1.3:-3047576 | None:intergenic |
| TATCATCAAAGTGGCCATCA+TGG | 0.473681 | 1.3:+3048566 | MS.gene26940:CDS |
| GCACTAAGAATTTCTTCTGT+GGG | 0.486160 | 1.3:+3048403 | MS.gene26940:CDS |
| ATGAAATTGAAGTCTAAGAA+AGG | 0.507796 | 1.3:+3046976 | MS.gene26940:CDS |
| ACTTCCTGAACTTGAAGCCT+GGG | 0.521778 | 1.3:-3047575 | None:intergenic |
| GATTTGCTCAATTCCCATGA+TGG | 0.523695 | 1.3:-3048580 | None:intergenic |
| AATTGAAGTCTAAGAAAGGA+TGG | 0.524868 | 1.3:+3046980 | MS.gene26940:CDS |
| GTTGAACCTCGGCAATGCCC+AGG | 0.525057 | 1.3:+3047558 | MS.gene26940:CDS |
| ATCTATCACTCTGGTGTCGA+AGG | 0.531982 | 1.3:+3047168 | MS.gene26940:CDS |
| ATCATCAAAGTGGCCATCAT+GGG | 0.535412 | 1.3:+3048567 | MS.gene26940:CDS |
| TTAACCGTTCCTTCAAGGAA+AGG | 0.547458 | 1.3:+3048605 | MS.gene26940:CDS |
| AGGGAAATCAATTCCAACTT+GGG | 0.551036 | 1.3:+3047743 | MS.gene26940:CDS |
| GGTCTTGGTATCTATCACTC+TGG | 0.557082 | 1.3:+3047159 | MS.gene26940:CDS |
| GTAAATCGGCTTGCTAAGCT+AGG | 0.560765 | 1.3:+3047765 | MS.gene26940:CDS |
| TTCAGGAAGTCGATATTCAT+CGG | 0.566691 | 1.3:+3047588 | MS.gene26940:CDS |
| CAATACACATAACCATTCAT+GGG | 0.567668 | 1.3:-3047132 | None:intergenic |
| GTTACCTTTCCTTGAAGGAA+CGG | 0.569265 | 1.3:-3048609 | None:intergenic |
| TCATTTAAAAGGAAAATCAC+CGG | 0.579187 | 1.3:+3047020 | MS.gene26940:CDS |
| TTGAAGCCTGGGCATTGCCG+AGG | 0.584621 | 1.3:-3047564 | None:intergenic |
| AATTCAGCTAGCCATGGACC+TGG | 0.589659 | 1.3:+3047072 | MS.gene26940:CDS |
| AATGGTTATGTGTATTGGGC+CGG | 0.593181 | 1.3:+3047138 | MS.gene26940:CDS |
| TATGACTTGACACCCATGAA+TGG | 0.598526 | 1.3:+3047120 | MS.gene26940:CDS |
| ACATATGCTACAAGCTTACA+GGG | 0.604015 | 1.3:+3047724 | MS.gene26940:CDS |
| AGCACTAAGAATTTCTTCTG+TGG | 0.616876 | 1.3:+3048402 | MS.gene26940:CDS |
| GAGGCTGTTTATCATCAAAG+TGG | 0.631803 | 1.3:+3048557 | MS.gene26940:CDS |
| CACTAAGAATTTCTTCTGTG+GGG | 0.635774 | 1.3:+3048404 | MS.gene26940:CDS |
| AGAGTGATAGATACCAAGAC+CGG | 0.635910 | 1.3:-3047157 | None:intergenic |
| AAAGTAAATTCAGCTAGCCA+TGG | 0.644369 | 1.3:+3047066 | MS.gene26940:CDS |
| GGGGCATGATCCTAATCATG+AGG | 0.671130 | 1.3:+3048423 | MS.gene26940:CDS |
| GCTCATGACTACCCAACAAG+CGG | 0.680057 | 1.3:+3047525 | MS.gene26940:CDS |
| TGTGAGTGTGCAAACTACAA+CGG | 0.683483 | 1.3:+3047654 | MS.gene26940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAACAATATTAGCAT+TGG | - | chr1.3:3048198-3048217 | None:intergenic | 15.0% |
| !! | ATTGTGAAATTGAATAAGAA+AGG | + | chr1.3:3048151-3048170 | MS.gene26940:intron | 20.0% |
| !!! | AGTCAAATGTTTTTAATGAT+CGG | - | chr1.3:3047356-3047375 | None:intergenic | 20.0% |
| ! | ATGAAATTGAAGTCTAAGAA+AGG | + | chr1.3:3046976-3046995 | MS.gene26940:CDS | 25.0% |
| ! | CAAATGAAGAAGAAAAACAT+TGG | - | chr1.3:3048318-3048337 | None:intergenic | 25.0% |
| ! | TCATACACATTAAGATAAAC+TGG | - | chr1.3:3047105-3047124 | None:intergenic | 25.0% |
| ! | TCATTTAAAAGGAAAATCAC+CGG | + | chr1.3:3047020-3047039 | MS.gene26940:CDS | 25.0% |
| ! | TTGTAGAAACAATGAAGATT+TGG | - | chr1.3:3048527-3048546 | None:intergenic | 25.0% |
| !! | CAATGTTTTTCTTCTTCATT+TGG | + | chr1.3:3048316-3048335 | MS.gene26940:intron | 25.0% |
| !! | GATTTTCCTTTTAAATGAAG+AGG | - | chr1.3:3047018-3047037 | None:intergenic | 25.0% |
| !!! | GTCAAATGTTTTTAATGATC+GGG | - | chr1.3:3047355-3047374 | None:intergenic | 25.0% |
| AAGAATATCCTAAAGACTAG+AGG | - | chr1.3:3047845-3047864 | None:intergenic | 30.0% | |
| AATTGAAGTCTAAGAAAGGA+TGG | + | chr1.3:3046980-3046999 | MS.gene26940:CDS | 30.0% | |
| AGAAGAAAAACATTGGCATA+AGG | - | chr1.3:3048311-3048330 | None:intergenic | 30.0% | |
| ATTGTGCCTCTTCATTTAAA+AGG | + | chr1.3:3047009-3047028 | MS.gene26940:CDS | 30.0% | |
| CAATACACATAACCATTCAT+GGG | - | chr1.3:3047135-3047154 | None:intergenic | 30.0% | |
| CATGAATGGTTATGTGTATT+GGG | + | chr1.3:3047134-3047153 | MS.gene26940:CDS | 30.0% | |
| CTTATTCAATTTCACAATCC+AGG | - | chr1.3:3048149-3048168 | None:intergenic | 30.0% | |
| GCATATGACTTAAATTAACC+TGG | + | chr1.3:3047247-3047266 | MS.gene26940:intron | 30.0% | |
| TGAACTGTAAAATACAGGTA+TGG | - | chr1.3:3047483-3047502 | None:intergenic | 30.0% | |
| TTTCTACAATCACCTTTAAG+AGG | + | chr1.3:3048538-3048557 | MS.gene26940:CDS | 30.0% | |
| ! | CACATGATAGTGAAAAAAGA+AGG | + | chr1.3:3048446-3048465 | MS.gene26940:CDS | 30.0% |
| ! | GCTTTGAATCAGATATTGAT+TGG | + | chr1.3:3047950-3047969 | MS.gene26940:intron | 30.0% |
| ! | TACCTGTATTTTACAGTTCA+TGG | + | chr1.3:3047483-3047502 | MS.gene26940:intron | 30.0% |
| !!! | AATAACTTTTAGCCTTATGC+CGG | + | chr1.3:3048216-3048235 | MS.gene26940:intron | 30.0% |
| !!! | GTCTTTAGGATATTCTTTTG+CGG | + | chr1.3:3047848-3047867 | MS.gene26940:intron | 30.0% |
| !!! | TCTTTAGGATATTCTTTTGC+GGG | + | chr1.3:3047849-3047868 | MS.gene26940:intron | 30.0% |
| AAAGTAAATTCAGCTAGCCA+TGG | + | chr1.3:3047066-3047085 | MS.gene26940:CDS | 35.0% | |
| AATAACGAAAAACGAGTCAC+CGG | - | chr1.3:3047042-3047061 | None:intergenic | 35.0% | |
| ACATATGCTACAAGCTTACA+GGG | + | chr1.3:3047724-3047743 | MS.gene26940:CDS | 35.0% | |
| ACTACATTTGAGAAAAAGCC+AGG | - | chr1.3:3047268-3047287 | None:intergenic | 35.0% | |
| AGCACTAAGAATTTCTTCTG+TGG | + | chr1.3:3048402-3048421 | MS.gene26940:CDS | 35.0% | |
| AGGGAAATCAATTCCAACTT+GGG | + | chr1.3:3047743-3047762 | MS.gene26940:CDS | 35.0% | |
| ATCTATTAACCGTTCCTTCA+AGG | + | chr1.3:3048600-3048619 | MS.gene26940:CDS | 35.0% | |
| ATGCATGATCCATATCACAT+GGG | - | chr1.3:3048089-3048108 | None:intergenic | 35.0% | |
| ATGGTTAGAGGTTACTGAAT+AGG | + | chr1.3:3047984-3048003 | MS.gene26940:intron | 35.0% | |
| CAATTCCAACTTGGGTAAAT+CGG | + | chr1.3:3047751-3047770 | MS.gene26940:CDS | 35.0% | |
| CACCATGAACTGTAAAATAC+AGG | - | chr1.3:3047488-3047507 | None:intergenic | 35.0% | |
| CACTAAGAATTTCTTCTGTG+GGG | + | chr1.3:3048404-3048423 | MS.gene26940:CDS | 35.0% | |
| CATGGTGTAGAATATGCATT+TGG | + | chr1.3:3047501-3047520 | MS.gene26940:CDS | 35.0% | |
| CCAATACACATAACCATTCA+TGG | - | chr1.3:3047136-3047155 | None:intergenic | 35.0% | |
| CCATGAATGGTTATGTGTAT+TGG | + | chr1.3:3047133-3047152 | MS.gene26940:CDS | 35.0% | |
| CGTTAAGGAGTAGAGTAATT+AGG | - | chr1.3:3048265-3048284 | None:intergenic | 35.0% | |
| GAAAAACATTGGCATAAGGT+TGG | - | chr1.3:3048307-3048326 | None:intergenic | 35.0% | |
| GAAGAAATTCTTAGTGCTTC+TGG | - | chr1.3:3048400-3048419 | None:intergenic | 35.0% | |
| GATGATAAACAGCCTCTTAA+AGG | - | chr1.3:3048553-3048572 | None:intergenic | 35.0% | |
| GCACTAAGAATTTCTTCTGT+GGG | + | chr1.3:3048403-3048422 | MS.gene26940:CDS | 35.0% | |
| GGTCAATTGACTGATTGAAA+TGG | + | chr1.3:3048172-3048191 | MS.gene26940:intron | 35.0% | |
| TACATCTTTGAATCCTGTTC+AGG | + | chr1.3:3047614-3047633 | MS.gene26940:CDS | 35.0% | |
| TATTGACACTTTGTGATGAC+AGG | + | chr1.3:3048352-3048371 | MS.gene26940:intron | 35.0% | |
| TCTGATTCAAAGCAATAGCA+AGG | - | chr1.3:3047943-3047962 | None:intergenic | 35.0% | |
| TTCAGGAAGTCGATATTCAT+CGG | + | chr1.3:3047588-3047607 | MS.gene26940:CDS | 35.0% | |
| ! | AGATAAACTGGAGTTTTTCC+AGG | - | chr1.3:3047093-3047112 | None:intergenic | 35.0% |
| ! | TTTGAATCCTGTTCAGGTTA+GGG | + | chr1.3:3047620-3047639 | MS.gene26940:CDS | 35.0% |
| !!! | CTTTAGGATATTCTTTTGCG+GGG | + | chr1.3:3047850-3047869 | MS.gene26940:intron | 35.0% |
| AAAAAGTTCATCGCCACTAC+CGG | - | chr1.3:3048238-3048257 | None:intergenic | 40.0% | |
| AATCGGAGTGAAATAGATCC+TGG | + | chr1.3:3048128-3048147 | MS.gene26940:intron | 40.0% | |
| AATGGTTATGTGTATTGGGC+CGG | + | chr1.3:3047138-3047157 | MS.gene26940:CDS | 40.0% | |
| AGAGTGATAGATACCAAGAC+CGG | - | chr1.3:3047160-3047179 | None:intergenic | 40.0% | |
| ATCATCAAAGTGGCCATCAT+GGG | + | chr1.3:3048567-3048586 | MS.gene26940:CDS | 40.0% | |
| CAGGGAAATCAATTCCAACT+TGG | + | chr1.3:3047742-3047761 | MS.gene26940:CDS | 40.0% | |
| CATGCATGATCCATATCACA+TGG | - | chr1.3:3048090-3048109 | None:intergenic | 40.0% | |
| CATGCTCTGTCTCTTAATCT+TGG | + | chr1.3:3047225-3047244 | MS.gene26940:intron | 40.0% | |
| CTATCATGTGCCTCATGATT+AGG | - | chr1.3:3048436-3048455 | None:intergenic | 40.0% | |
| GACATATGCTACAAGCTTAC+AGG | + | chr1.3:3047723-3047742 | MS.gene26940:CDS | 40.0% | |
| GAGGCTGTTTATCATCAAAG+TGG | + | chr1.3:3048557-3048576 | MS.gene26940:CDS | 40.0% | |
| GATCGCATTCTGAGCAAAAT+CGG | + | chr1.3:3048111-3048130 | MS.gene26940:intron | 40.0% | |
| TATCATCAAAGTGGCCATCA+TGG | + | chr1.3:3048566-3048585 | MS.gene26940:CDS | 40.0% | |
| TATGACTTGACACCCATGAA+TGG | + | chr1.3:3047120-3047139 | MS.gene26940:CDS | 40.0% | |
| TGTGAGTGTGCAAACTACAA+CGG | + | chr1.3:3047654-3047673 | MS.gene26940:CDS | 40.0% | |
| TTAACCGTTCCTTCAAGGAA+AGG | + | chr1.3:3048605-3048624 | MS.gene26940:CDS | 40.0% | |
| ! | ACATCACACACACACAGTTT+TGG | - | chr1.3:3047905-3047924 | None:intergenic | 40.0% |
| ! | ACATTGGCATAAGGTTGGTT+TGG | - | chr1.3:3048302-3048321 | None:intergenic | 40.0% |
| ! | CTTTGAATCCTGTTCAGGTT+AGG | + | chr1.3:3047619-3047638 | MS.gene26940:CDS | 40.0% |
| ! | GATTTGCTCAATTCCCATGA+TGG | - | chr1.3:3048583-3048602 | None:intergenic | 40.0% |
| ! | TGTTGCAACCTCTAGTCTTT+AGG | + | chr1.3:3047834-3047853 | MS.gene26940:intron | 40.0% |
| ! | TTTTGCGGGGAAGGAATAAA+AGG | + | chr1.3:3047863-3047882 | MS.gene26940:intron | 40.0% |
| !! | GGTGTCGAAGGTATGATTTT+AGG | + | chr1.3:3047180-3047199 | MS.gene26940:intron | 40.0% |
| !!! | GTGTTTTTGAGGTTGAACCT+CGG | + | chr1.3:3047547-3047566 | MS.gene26940:CDS | 40.0% |
| ACCTCAAAAACACCGCTTGT+TGG | - | chr1.3:3047540-3047559 | None:intergenic | 45.0% | |
| ACTTCCTGAACTTGAAGCCT+GGG | - | chr1.3:3047578-3047597 | None:intergenic | 45.0% | |
| ATGAACTCCCTAACCTGAAC+AGG | - | chr1.3:3047630-3047649 | None:intergenic | 45.0% | |
| CCTCAAAAACACCGCTTGTT+GGG | - | chr1.3:3047539-3047558 | None:intergenic | 45.0% | |
| CTTACCAGTCCCATGTGATA+TGG | + | chr1.3:3048077-3048096 | MS.gene26940:intron | 45.0% | |
| GGTCTTGGTATCTATCACTC+TGG | + | chr1.3:3047159-3047178 | MS.gene26940:CDS | 45.0% | |
| TGATCCATATCACATGGGAC+TGG | - | chr1.3:3048084-3048103 | None:intergenic | 45.0% | |
| ! | ACCTCTAACCATCTAGCTTC+AGG | - | chr1.3:3047976-3047995 | None:intergenic | 45.0% |
| ! | AGGATATTCTTTTGCGGGGA+AGG | + | chr1.3:3047854-3047873 | MS.gene26940:intron | 45.0% |
| ! | ATCTATCACTCTGGTGTCGA+AGG | + | chr1.3:3047168-3047187 | MS.gene26940:CDS | 45.0% |
| ! | TGTTCAGGTTAGGGAGTTCA+TGG | + | chr1.3:3047629-3047648 | MS.gene26940:CDS | 45.0% |
| !! | ATAAGGTTGGTTTGGTGGCT+AGG | - | chr1.3:3048294-3048313 | None:intergenic | 45.0% |
| !! | GTAAATCGGCTTGCTAAGCT+AGG | + | chr1.3:3047765-3047784 | MS.gene26940:CDS | 45.0% |
| !! | TTGATTGGCCTGAAGCTAGA+TGG | + | chr1.3:3047965-3047984 | MS.gene26940:intron | 45.0% |
| !! | TTGGCATAAGGTTGGTTTGG+TGG | - | chr1.3:3048299-3048318 | None:intergenic | 45.0% |
| !!! | CACACACACACAGTTTTGGA+TGG | - | chr1.3:3047901-3047920 | None:intergenic | 45.0% |
| !!! | TTTTAGCCTTATGCCGGTAG+TGG | + | chr1.3:3048222-3048241 | MS.gene26940:intron | 45.0% |
| AATTCAGCTAGCCATGGACC+TGG | + | chr1.3:3047072-3047091 | MS.gene26940:CDS | 50.0% | |
| GACTTCCTGAACTTGAAGCC+TGG | - | chr1.3:3047579-3047598 | None:intergenic | 50.0% | |
| GCCTGAAGCTAGATGGTTAG+AGG | + | chr1.3:3047972-3047991 | MS.gene26940:intron | 50.0% | |
| GCTCATGACTACCCAACAAG+CGG | + | chr1.3:3047525-3047544 | MS.gene26940:CDS | 50.0% | |
| GGGGCATGATCCTAATCATG+AGG | + | chr1.3:3048423-3048442 | MS.gene26940:CDS | 50.0% | |
| TATGTGTATTGGGCCGGTCT+TGG | + | chr1.3:3047144-3047163 | MS.gene26940:CDS | 50.0% | |
| ! | AATGCCCAGGCTTCAAGTTC+AGG | + | chr1.3:3047571-3047590 | MS.gene26940:CDS | 50.0% |
| ! | CTGGAGTTTTTCCAGGTCCA+TGG | - | chr1.3:3047086-3047105 | None:intergenic | 50.0% |
| ! | GCAAGCCGATTTACCCAAGT+TGG | - | chr1.3:3047759-3047778 | None:intergenic | 50.0% |
| !! | CCCAACAAGCGGTGTTTTTG+AGG | + | chr1.3:3047536-3047555 | MS.gene26940:CDS | 50.0% |
| TCATCGCCACTACCGGCATA+AGG | - | chr1.3:3048231-3048250 | None:intergenic | 55.0% | |
| !! | AGGTTGGTTTGGTGGCTAGG+TGG | - | chr1.3:3048291-3048310 | None:intergenic | 55.0% |
| !! | TTGGTTTGGTGGCTAGGTGG+AGG | - | chr1.3:3048288-3048307 | None:intergenic | 55.0% |
| GTTGAACCTCGGCAATGCCC+AGG | + | chr1.3:3047558-3047577 | MS.gene26940:CDS | 60.0% | |
| ! | TTGAAGCCTGGGCATTGCCG+AGG | - | chr1.3:3047567-3047586 | None:intergenic | 60.0% |
| !! | GTGGCTAGGTGGAGGCGTTA+AGG | - | chr1.3:3048280-3048299 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 3046976 | 3048630 | 3046976 | ID=MS.gene26940 |
| chr1.3 | mRNA | 3046976 | 3048630 | 3046976 | ID=MS.gene26940.t1;Parent=MS.gene26940 |
| chr1.3 | exon | 3046976 | 3047189 | 3046976 | ID=MS.gene26940.t1.exon1;Parent=MS.gene26940.t1 |
| chr1.3 | CDS | 3046976 | 3047189 | 3046976 | ID=cds.MS.gene26940.t1;Parent=MS.gene26940.t1 |
| chr1.3 | exon | 3047499 | 3047786 | 3047499 | ID=MS.gene26940.t1.exon2;Parent=MS.gene26940.t1 |
| chr1.3 | CDS | 3047499 | 3047786 | 3047499 | ID=cds.MS.gene26940.t1;Parent=MS.gene26940.t1 |
| chr1.3 | exon | 3048374 | 3048630 | 3048374 | ID=MS.gene26940.t1.exon3;Parent=MS.gene26940.t1 |
| chr1.3 | CDS | 3048374 | 3048630 | 3048374 | ID=cds.MS.gene26940.t1;Parent=MS.gene26940.t1 |
| Gene Sequence |
| Protein sequence |
