Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26954.t1 | XP_013466085.1 | 99.6 | 460 | 2 | 0 | 1 | 460 | 20 | 479 | 4.00E-266 | 926.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26954.t1 | Q9M069 | 64.4 | 455 | 133 | 3 | 1 | 455 | 22 | 447 | 2.0e-170 | 600.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26954.t1 | A0A072VF96 | 99.6 | 460 | 2 | 0 | 1 | 460 | 20 | 479 | 2.9e-266 | 926.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061106 | MS.gene26954 | 0.812694 | 3.73E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 134 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTGGTGGTAAAATT+AGG | 0.082325 | 1.3:+2916495 | MS.gene26954:CDS |
| TGTGCAACTACAAGCAAATT+TGG | 0.210617 | 1.3:+2917815 | MS.gene26954:CDS |
| TAGATCTGCACTAGATTCTA+TGG | 0.240384 | 1.3:+2916988 | MS.gene26954:CDS |
| TCCTGGAAGGGCTGATAATT+TGG | 0.251824 | 1.3:+2916685 | MS.gene26954:CDS |
| GGGTTTGTTGTCGTTTAATA+AGG | 0.272334 | 1.3:+2916607 | MS.gene26954:CDS |
| TTCTCTTGGTGGTAAAATTA+GGG | 0.311256 | 1.3:+2916496 | MS.gene26954:CDS |
| GTTGGCGAGGGATTTGATTA+TGG | 0.311492 | 1.3:-2916246 | None:intergenic |
| TCCGATTACAATTCCGATTC+CGG | 0.315603 | 1.3:-2916270 | None:intergenic |
| TTGTCGTTTAATAAGGATAC+TGG | 0.317569 | 1.3:+2916614 | MS.gene26954:CDS |
| TATAATAGTTGTATTTATAC+TGG | 0.317977 | 1.3:+2918610 | MS.gene26954:CDS |
| CATGAATATGTTTGATGCTC+AGG | 0.324784 | 1.3:+2916766 | MS.gene26954:CDS |
| CATGCTATGTTACTATTATA+CGG | 0.335966 | 1.3:-2917765 | None:intergenic |
| ACATCAGTTAATCCTGCTTT+TGG | 0.340038 | 1.3:-2917795 | None:intergenic |
| GATTAAGCACCTGCGATCTA+AGG | 0.346796 | 1.3:+2917120 | MS.gene26954:CDS |
| GTTGTTGGACTTGGAACTTT+TGG | 0.356417 | 1.3:-2917741 | None:intergenic |
| GTTGGTGGAAATCCAGGTTT+TGG | 0.362874 | 1.3:-2916339 | None:intergenic |
| AATGATACAAATCTTATTAA+CGG | 0.369125 | 1.3:+2916428 | MS.gene26954:CDS |
| GCATGGTTAGCTAATGTGTT+AGG | 0.371637 | 1.3:-2917900 | None:intergenic |
| TTACTATTATACGGCGTTGT+TGG | 0.396054 | 1.3:-2917756 | None:intergenic |
| GCTGGTTCTGAGAAAGCCTT+CGG | 0.400618 | 1.3:+2917220 | MS.gene26954:CDS |
| TACAATTCCGATTCCGGTGT+TGG | 0.404377 | 1.3:-2916264 | None:intergenic |
| CCATTCCTCGGAGTAAACTA+TGG | 0.408450 | 1.3:+2916128 | MS.gene26954:CDS |
| GGATAAGGATTAATAGCAAA+AGG | 0.408820 | 1.3:-2916641 | None:intergenic |
| GATAAGGATTAATAGCAAAA+GGG | 0.410562 | 1.3:-2916640 | None:intergenic |
| AACTCGGAGCCACCTTCTGC+TGG | 0.410697 | 1.3:+2916551 | MS.gene26954:CDS |
| TTATAAGCAAAATAAGGATA+AGG | 0.414067 | 1.3:-2916656 | None:intergenic |
| CTGGTTCTGAGAAAGCCTTC+GGG | 0.427029 | 1.3:+2917221 | MS.gene26954:CDS |
| TCCCTCGCCAACACCGGAAT+CGG | 0.431599 | 1.3:+2916257 | MS.gene26954:CDS |
| GACCGGCATTCGGTTGGAAA+AGG | 0.437326 | 1.3:-2916715 | None:intergenic |
| ATGTTGCTGGCGGGATAGTA+AGG | 0.437537 | 1.3:-2916368 | None:intergenic |
| GAGATTGTGGTTGCGGAGAC+AGG | 0.439275 | 1.3:+2917025 | MS.gene26954:CDS |
| TTTGCTTATAAAAGTGATCC+TGG | 0.441378 | 1.3:+2916668 | MS.gene26954:CDS |
| ATCCAAGTTTCGCCAAAACC+TGG | 0.446819 | 1.3:+2916327 | MS.gene26954:CDS |
| GAGGACGTTGGTGGAAATCC+AGG | 0.449002 | 1.3:-2916345 | None:intergenic |
| TTATACGGCGTTGTTGGACT+TGG | 0.451067 | 1.3:-2917750 | None:intergenic |
| GGATTTGATTATGGCGGGAT+CGG | 0.452407 | 1.3:-2916237 | None:intergenic |
| GCAAATTTGGATTATGCTTG+TGG | 0.452527 | 1.3:+2917828 | MS.gene26954:CDS |
| GCCAAATTATCAGCCCTTCC+AGG | 0.454800 | 1.3:-2916686 | None:intergenic |
| GGAGGGTATGTCGCCGTTTG+CGG | 0.457744 | 1.3:-2916294 | None:intergenic |
| GCATCAACCCGACCGGCATT+CGG | 0.458627 | 1.3:-2916725 | None:intergenic |
| ATCTCTTCTATCACACTGTT+GGG | 0.461725 | 1.3:+2917937 | MS.gene26954:CDS |
| GGATGTTGAGATTGTGGTTG+CGG | 0.465710 | 1.3:+2917018 | MS.gene26954:CDS |
| GCTTTCTCAGAACCAGCTCC+AGG | 0.467861 | 1.3:-2917214 | None:intergenic |
| ACCGGAATCGGAATTGTAAT+CGG | 0.470248 | 1.3:+2916269 | MS.gene26954:CDS |
| TTTCCAACCGAATGCCGGTC+GGG | 0.471037 | 1.3:+2916718 | MS.gene26954:CDS |
| TCGTCGTTATCTCCTTTGTA+AGG | 0.471777 | 1.3:-2917052 | None:intergenic |
| TATGATGAGGACTTGAAGCC+TGG | 0.475102 | 1.3:+2917196 | MS.gene26954:CDS |
| CTTGATGAAGCTTCTCTTGG+TGG | 0.477574 | 1.3:+2916485 | MS.gene26954:CDS |
| GCGCTTGATGAAGCTTCTCT+TGG | 0.478524 | 1.3:+2916482 | MS.gene26954:CDS |
| CCATAGTTTACTCCGAGGAA+TGG | 0.481901 | 1.3:-2916128 | None:intergenic |
| TTGGATTATGCTTGTGGGCA+GGG | 0.482048 | 1.3:+2917834 | MS.gene26954:CDS |
| TGGATTATGCTTGTGGGCAG+GGG | 0.487006 | 1.3:+2917835 | MS.gene26954:CDS |
| TAGTAGCCCCGTGGTATCTC+CGG | 0.488228 | 1.3:+2917318 | MS.gene26954:CDS |
| TTTCGAAGGCGGTGGTTTGG+AGG | 0.488710 | 1.3:-2916196 | None:intergenic |
| CGGTGGCGGATGCTGGTGGA+AGG | 0.489604 | 1.3:-2916166 | None:intergenic |
| CAAATTTGGATTATGCTTGT+GGG | 0.491169 | 1.3:+2917829 | MS.gene26954:CDS |
| TTTGGATTATGCTTGTGGGC+AGG | 0.494350 | 1.3:+2917833 | MS.gene26954:CDS |
| TCCGATTCCGGTGTTGGCGA+GGG | 0.494660 | 1.3:-2916258 | None:intergenic |
| GTGGAAGGTTGTCGGCGACT+TGG | 0.495042 | 1.3:-2916151 | None:intergenic |
| CATAGTTTACTCCGAGGAAT+GGG | 0.498903 | 1.3:-2916127 | None:intergenic |
| TGGTAAAATTAGGGTTTCTA+CGG | 0.503871 | 1.3:+2916505 | MS.gene26954:CDS |
| GCGAGGGATTTGATTATGGC+GGG | 0.506513 | 1.3:-2916242 | None:intergenic |
| AATCTCTTCTATCACACTGT+TGG | 0.507292 | 1.3:+2917936 | MS.gene26954:CDS |
| GGATGCTGGTGGAAGGTTGT+CGG | 0.507464 | 1.3:-2916159 | None:intergenic |
| AGCACCTGCGATCTAAGGTT+GGG | 0.513066 | 1.3:+2917125 | MS.gene26954:CDS |
| GCATGGTGTGTGCCAAAAGC+AGG | 0.513211 | 1.3:+2917783 | MS.gene26954:CDS |
| AGATCTGCACTAGATTCTAT+GGG | 0.515532 | 1.3:+2916989 | MS.gene26954:CDS |
| GAGGACTTGAAGCCTGGAGC+TGG | 0.515732 | 1.3:+2917202 | MS.gene26954:CDS |
| ACTGATTTCCCTGGCATCAG+TGG | 0.516517 | 1.3:-2917151 | None:intergenic |
| GGTGATGAGGATGATGTTGC+TGG | 0.516557 | 1.3:-2916381 | None:intergenic |
| GCCTTTGCATTCTCAATACT+CGG | 0.519040 | 1.3:-2917082 | None:intergenic |
| GTTGGGACACCACTGATGCC+AGG | 0.519883 | 1.3:+2917142 | MS.gene26954:CDS |
| TTCCGATTCCGGTGTTGGCG+AGG | 0.521696 | 1.3:-2916259 | None:intergenic |
| AAAGGAGATAACGACGAGGC+TGG | 0.525920 | 1.3:+2917058 | MS.gene26954:CDS |
| GGTTCAAAACAAGCACCTCC+TGG | 0.528280 | 1.3:-2917879 | None:intergenic |
| ATTGTAATCGGAGCCGCAAA+CGG | 0.531017 | 1.3:+2916281 | MS.gene26954:CDS |
| ATCAAATCCCTCGCCAACAC+CGG | 0.533535 | 1.3:+2916251 | MS.gene26954:CDS |
| CTTATAAAAGTGATCCTGGA+AGG | 0.535941 | 1.3:+2916672 | MS.gene26954:CDS |
| CAACCCGACCGGCATTCGGT+TGG | 0.536871 | 1.3:-2916721 | None:intergenic |
| GGCGAGGGATTTGATTATGG+CGG | 0.537617 | 1.3:-2916243 | None:intergenic |
| CTTCAAGTCCTCATCATACA+AGG | 0.538927 | 1.3:-2917191 | None:intergenic |
| CGACAACAAACCCTGCAAAA+CGG | 0.539250 | 1.3:-2916597 | None:intergenic |
| ATAGTAAGGGAGGACGTTGG+TGG | 0.542466 | 1.3:-2916354 | None:intergenic |
| AAGCACCTGCGATCTAAGGT+TGG | 0.545052 | 1.3:+2917124 | MS.gene26954:CDS |
| ATAGTTGTATTTATACTGGA+GGG | 0.553455 | 1.3:+2918614 | MS.gene26954:CDS |
| TAGTGCTTTGTTGCTTAGAG+AGG | 0.556972 | 1.3:-2917282 | None:intergenic |
| AATAGTTGTATTTATACTGG+AGG | 0.558577 | 1.3:+2918613 | MS.gene26954:CDS |
| GATACCACGGGGCTACTAGT+AGG | 0.558920 | 1.3:-2917313 | None:intergenic |
| AGTGTGATAGAAGAGATTCA+TGG | 0.564034 | 1.3:-2917931 | None:intergenic |
| ATCAGTGTTGTAAAGCCCGA+AGG | 0.564335 | 1.3:-2917236 | None:intergenic |
| GTGTCCCAACCTTAGATCGC+AGG | 0.566462 | 1.3:-2917129 | None:intergenic |
| CAAAACAAGCACCTCCTGGT+TGG | 0.568304 | 1.3:-2917875 | None:intergenic |
| AGTATTTGCATCAACCCGAC+CGG | 0.574473 | 1.3:-2916732 | None:intergenic |
| ATAAGGATTAATAGCAAAAG+GGG | 0.575778 | 1.3:-2916639 | None:intergenic |
| TATGTGTCCACTGATTTCCC+TGG | 0.578850 | 1.3:-2917160 | None:intergenic |
| TTTGCGGTGGCGGATGCTGG+TGG | 0.579027 | 1.3:-2916170 | None:intergenic |
| GCAGAATCTGACCCATTCCT+CGG | 0.583867 | 1.3:+2916116 | None:intergenic |
| CTTCGTTGCCGACGGTGATG+AGG | 0.587261 | 1.3:-2916394 | None:intergenic |
| CAAACGATGATCTATGACGC+TGG | 0.587813 | 1.3:+2917259 | MS.gene26954:CDS |
| ACTTGGATCGGAAGCGAGGG+AGG | 0.590059 | 1.3:-2916312 | None:intergenic |
| ATGAGGATGATGTTGCTGGC+GGG | 0.593640 | 1.3:-2916377 | None:intergenic |
| CGAAACTTGGATCGGAAGCG+AGG | 0.597502 | 1.3:-2916316 | None:intergenic |
| TTCTACGGTTCATACGATGT+CGG | 0.598813 | 1.3:+2916520 | MS.gene26954:CDS |
| TTGGGACACCACTGATGCCA+GGG | 0.599886 | 1.3:+2917143 | MS.gene26954:CDS |
| CGTATAATAGTAACATAGCA+TGG | 0.600001 | 1.3:+2917766 | MS.gene26954:CDS |
| CATCTTTGCCTTGTATGATG+AGG | 0.600659 | 1.3:+2917183 | MS.gene26954:CDS |
| GAAACTTGGATCGGAAGCGA+GGG | 0.603669 | 1.3:-2916315 | None:intergenic |
| TCATGAAAACTTCCAGCAGA+AGG | 0.604960 | 1.3:-2916563 | None:intergenic |
| AGATTGTGGTTGCGGAGACA+GGG | 0.609553 | 1.3:+2917026 | MS.gene26954:CDS |
| CGGGATCGGTTCCGTATAGT+CGG | 0.611085 | 1.3:-2916223 | None:intergenic |
| AATTCATACCGGAGATACCA+CGG | 0.615954 | 1.3:-2917326 | None:intergenic |
| GATTGTAGCTTAATCCAACC+AGG | 0.618358 | 1.3:+2917861 | MS.gene26954:CDS |
| AACATCATCCTCATCACCGT+CGG | 0.621796 | 1.3:+2916386 | MS.gene26954:CDS |
| ATTCATACCGGAGATACCAC+GGG | 0.621948 | 1.3:-2917325 | None:intergenic |
| GAGACAGGGTGGCCTTACAA+AGG | 0.630203 | 1.3:+2917040 | MS.gene26954:CDS |
| TTATAAAAGTGATCCTGGAA+GGG | 0.632786 | 1.3:+2916673 | MS.gene26954:CDS |
| CTTGGATCGGAAGCGAGGGA+GGG | 0.633878 | 1.3:-2916311 | None:intergenic |
| GAGAATGCAAAGGCTTACAA+TGG | 0.637829 | 1.3:+2917091 | MS.gene26954:CDS |
| TGTTGCTGGCGGGATAGTAA+GGG | 0.641175 | 1.3:-2916367 | None:intergenic |
| TGAAAACTTCCAGCAGAAGG+TGG | 0.643067 | 1.3:-2916560 | None:intergenic |
| GATTCATGGCGTATGCAGCA+TGG | 0.644106 | 1.3:-2917917 | None:intergenic |
| ACCGAGTATTGAGAATGCAA+AGG | 0.650369 | 1.3:+2917081 | MS.gene26954:CDS |
| TGCTGGCGGGATAGTAAGGG+AGG | 0.653268 | 1.3:-2916364 | None:intergenic |
| AGTGATGACTTCGTTGCCGA+CGG | 0.661992 | 1.3:-2916402 | None:intergenic |
| GATGAGGATGATGTTGCTGG+CGG | 0.665630 | 1.3:-2916378 | None:intergenic |
| ACGGGGCTACTAGTAGGTGT+AGG | 0.667625 | 1.3:-2917307 | None:intergenic |
| GGGATAGTAAGGGAGGACGT+TGG | 0.674640 | 1.3:-2916357 | None:intergenic |
| ACTGATGCCAGGGAAATCAG+TGG | 0.687146 | 1.3:+2917153 | MS.gene26954:CDS |
| TTGTGGTTGCGGAGACAGGG+TGG | 0.690352 | 1.3:+2917029 | MS.gene26954:CDS |
| CTTGGCCATAGTTTACTCCG+AGG | 0.717839 | 1.3:-2916133 | None:intergenic |
| TACACCTACTAGTAGCCCCG+TGG | 0.742913 | 1.3:+2917309 | MS.gene26954:CDS |
| TGTAGCTTAATCCAACCAGG+AGG | 0.770988 | 1.3:+2917864 | MS.gene26954:CDS |
| TTCATACCGGAGATACCACG+GGG | 0.792540 | 1.3:-2917324 | None:intergenic |
| TTACAAAGGAGATAACGACG+AGG | 0.827370 | 1.3:+2917054 | MS.gene26954:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATACAAATCTTATTAA+CGG | + | chr1.3:2916428-2916447 | MS.gene26954:CDS | 15.0% |
| !! | ATATAATCAGAATTGATATT+TGG | - | chr1.3:2916797-2916816 | None:intergenic | 15.0% |
| !! | GTTTAAACAATACTATATTA+GGG | + | chr1.3:2918224-2918243 | MS.gene26954:intron | 15.0% |
| !! | TATAATAGTTGTATTTATAC+TGG | + | chr1.3:2918610-2918629 | MS.gene26954:CDS | 15.0% |
| !! | TGTTTAAACAATACTATATT+AGG | + | chr1.3:2918223-2918242 | MS.gene26954:intron | 15.0% |
| !!! | ATATACTTTGTTTATTTTGT+AGG | + | chr1.3:2918586-2918605 | MS.gene26954:intron | 15.0% |
| !! | AGACAAAAGTTATTAGAAAA+TGG | - | chr1.3:2918386-2918405 | None:intergenic | 20.0% |
| !! | AGTTAATAACTGATTATTAG+TGG | + | chr1.3:2918270-2918289 | MS.gene26954:intron | 20.0% |
| !! | GTTAATAACTGATTATTAGT+GGG | + | chr1.3:2918271-2918290 | MS.gene26954:intron | 20.0% |
| !! | TTATAAGCAAAATAAGGATA+AGG | - | chr1.3:2916659-2916678 | None:intergenic | 20.0% |
| !!! | TCACTTTTATAAGCAAAATA+AGG | - | chr1.3:2916665-2916684 | None:intergenic | 20.0% |
| !!! | TTGTTTATCACTTTAGATTT+TGG | + | chr1.3:2918475-2918494 | MS.gene26954:intron | 20.0% |
| ! | AATAGTTGTATTTATACTGG+AGG | + | chr1.3:2918613-2918632 | MS.gene26954:CDS | 25.0% |
| ! | ATAAGGATTAATAGCAAAAG+GGG | - | chr1.3:2916642-2916661 | None:intergenic | 25.0% |
| ! | ATAGTTGTATTTATACTGGA+GGG | + | chr1.3:2918614-2918633 | MS.gene26954:CDS | 25.0% |
| ! | CATGCTATGTTACTATTATA+CGG | - | chr1.3:2917768-2917787 | None:intergenic | 25.0% |
| ! | CTCAATTACCAAAATCTAAA+GGG | - | chr1.3:2918416-2918435 | None:intergenic | 25.0% |
| ! | GATAAGGATTAATAGCAAAA+GGG | - | chr1.3:2916643-2916662 | None:intergenic | 25.0% |
| ! | TAAAGTGATAGAATTCATAC+CGG | - | chr1.3:2917340-2917359 | None:intergenic | 25.0% |
| ! | TATGCAATGTATGTAGTATT+TGG | - | chr1.3:2918308-2918327 | None:intergenic | 25.0% |
| ! | TCTCAATTACCAAAATCTAA+AGG | - | chr1.3:2918417-2918436 | None:intergenic | 25.0% |
| ! | TGTGAAAAATCACAAGTTAA+TGG | - | chr1.3:2917969-2917988 | None:intergenic | 25.0% |
| !! | GTATTAAGTTGTGCATTATT+CGG | + | chr1.3:2918331-2918350 | MS.gene26954:intron | 25.0% |
| !! | TTGTTTATCCCTTTAGATTT+TGG | + | chr1.3:2918405-2918424 | MS.gene26954:intron | 25.0% |
| AACAAAGCGGAATTCTTAAA+CGG | + | chr1.3:2917577-2917596 | MS.gene26954:intron | 30.0% | |
| ATGAAAATGATGATACTTGG+TGG | - | chr1.3:2917431-2917450 | None:intergenic | 30.0% | |
| CAAATTTGGATTATGCTTGT+GGG | + | chr1.3:2917829-2917848 | MS.gene26954:CDS | 30.0% | |
| CGTATAATAGTAACATAGCA+TGG | + | chr1.3:2917766-2917785 | MS.gene26954:CDS | 30.0% | |
| GATTAATGATTGCAAAATGC+TGG | - | chr1.3:2917611-2917630 | None:intergenic | 30.0% | |
| GGATAAGGATTAATAGCAAA+AGG | - | chr1.3:2916644-2916663 | None:intergenic | 30.0% | |
| GGTATGAAAATGATGATACT+TGG | - | chr1.3:2917434-2917453 | None:intergenic | 30.0% | |
| TGGTAAAATTAGGGTTTCTA+CGG | + | chr1.3:2916505-2916524 | MS.gene26954:CDS | 30.0% | |
| TTATAAAAGTGATCCTGGAA+GGG | + | chr1.3:2916673-2916692 | MS.gene26954:CDS | 30.0% | |
| TTGAATTTGATTGAAGACTC+CGG | + | chr1.3:2917501-2917520 | MS.gene26954:intron | 30.0% | |
| TTTCTCAGATATCGTAAGAT+AGG | - | chr1.3:2918061-2918080 | None:intergenic | 30.0% | |
| TTTGCTTATAAAAGTGATCC+TGG | + | chr1.3:2916668-2916687 | MS.gene26954:CDS | 30.0% | |
| ! | ACTAGATTCTATGGGTTTTA+AGG | + | chr1.3:2916997-2917016 | MS.gene26954:CDS | 30.0% |
| ! | ATTATTCGGCAAAAGTTGAT+TGG | + | chr1.3:2918345-2918364 | MS.gene26954:intron | 30.0% |
| ! | TACTATGCACAGTTGATTTA+TGG | - | chr1.3:2918129-2918148 | None:intergenic | 30.0% |
| ! | TTCTCTTGGTGGTAAAATTA+GGG | + | chr1.3:2916496-2916515 | MS.gene26954:CDS | 30.0% |
| ! | TTGTCGTTTAATAAGGATAC+TGG | + | chr1.3:2916614-2916633 | MS.gene26954:CDS | 30.0% |
| ! | TTTAAGAATTCCGCTTTGTT+TGG | - | chr1.3:2917577-2917596 | None:intergenic | 30.0% |
| ! | TTTTATTGTGTGTATTGTGC+AGG | + | chr1.3:2916955-2916974 | MS.gene26954:intron | 30.0% |
| !! | GATTTTGGTAATTGAGAATG+TGG | + | chr1.3:2918420-2918439 | MS.gene26954:intron | 30.0% |
| !! | TCAAAATTTTATGAGTGTCG+AGG | + | chr1.3:2916834-2916853 | MS.gene26954:intron | 30.0% |
| !! | TTTTAAGGATGTTGAGATTG+TGG | + | chr1.3:2917012-2917031 | MS.gene26954:CDS | 30.0% |
| AAGTTCTACACCAAACAAAG+CGG | + | chr1.3:2917564-2917583 | MS.gene26954:intron | 35.0% | |
| AATCTCTTCTATCACACTGT+TGG | + | chr1.3:2917936-2917955 | MS.gene26954:CDS | 35.0% | |
| AGATCTGCACTAGATTCTAT+GGG | + | chr1.3:2916989-2917008 | MS.gene26954:CDS | 35.0% | |
| AGTGTGATAGAAGAGATTCA+TGG | - | chr1.3:2917934-2917953 | None:intergenic | 35.0% | |
| ATCTCTTCTATCACACTGTT+GGG | + | chr1.3:2917937-2917956 | MS.gene26954:CDS | 35.0% | |
| CATGAATATGTTTGATGCTC+AGG | + | chr1.3:2916766-2916785 | MS.gene26954:CDS | 35.0% | |
| CTTATAAAAGTGATCCTGGA+AGG | + | chr1.3:2916672-2916691 | MS.gene26954:CDS | 35.0% | |
| GCAAATTTGGATTATGCTTG+TGG | + | chr1.3:2917828-2917847 | MS.gene26954:CDS | 35.0% | |
| TAGAACAGTTTCAAGATGAG+AGG | - | chr1.3:2917455-2917474 | None:intergenic | 35.0% | |
| TAGATCTGCACTAGATTCTA+TGG | + | chr1.3:2916988-2917007 | MS.gene26954:CDS | 35.0% | |
| TGTGCAACTACAAGCAAATT+TGG | + | chr1.3:2917815-2917834 | MS.gene26954:CDS | 35.0% | |
| TTACTATTATACGGCGTTGT+TGG | - | chr1.3:2917759-2917778 | None:intergenic | 35.0% | |
| TTCGAAAAAGTCCGACTATA+CGG | + | chr1.3:2916212-2916231 | MS.gene26954:CDS | 35.0% | |
| ! | ACATCAGTTAATCCTGCTTT+TGG | - | chr1.3:2917798-2917817 | None:intergenic | 35.0% |
| ! | CTTCTCTTGGTGGTAAAATT+AGG | + | chr1.3:2916495-2916514 | MS.gene26954:CDS | 35.0% |
| ! | GAATATAGTACCGTTTTGCA+GGG | + | chr1.3:2916587-2916606 | MS.gene26954:CDS | 35.0% |
| ! | TTTTGCATGTTCTGTATAGC+TGG | - | chr1.3:2916461-2916480 | None:intergenic | 35.0% |
| !! | AAAGTTGATTGGTTCTGACT+TGG | + | chr1.3:2918356-2918375 | MS.gene26954:intron | 35.0% |
| !! | ACTTTTGGCGTTGAATTCAT+AGG | - | chr1.3:2917729-2917748 | None:intergenic | 35.0% |
| !! | CTTTGTTTGGTGTAGAACTT+GGG | - | chr1.3:2917564-2917583 | None:intergenic | 35.0% |
| !! | GGGTTTGTTGTCGTTTAATA+AGG | + | chr1.3:2916607-2916626 | MS.gene26954:CDS | 35.0% |
| !!! | GATGTCGGTTTTGAAAAACT+CGG | + | chr1.3:2916535-2916554 | MS.gene26954:CDS | 35.0% |
| AAACCGCATGAGAACTTACT+TGG | - | chr1.3:2918017-2918036 | None:intergenic | 40.0% | |
| AACCCAAGTAAGTTCTCATG+CGG | + | chr1.3:2918011-2918030 | MS.gene26954:intron | 40.0% | |
| AACCGCATGAGAACTTACTT+GGG | - | chr1.3:2918016-2918035 | None:intergenic | 40.0% | |
| AATTCATACCGGAGATACCA+CGG | - | chr1.3:2917329-2917348 | None:intergenic | 40.0% | |
| ACCGGAATCGGAATTGTAAT+CGG | + | chr1.3:2916269-2916288 | MS.gene26954:CDS | 40.0% | |
| CATAGTTTACTCCGAGGAAT+GGG | - | chr1.3:2916130-2916149 | None:intergenic | 40.0% | |
| CATCTTTGCCTTGTATGATG+AGG | + | chr1.3:2917183-2917202 | MS.gene26954:CDS | 40.0% | |
| CTTCAAGTCCTCATCATACA+AGG | - | chr1.3:2917194-2917213 | None:intergenic | 40.0% | |
| GAGAATGCAAAGGCTTACAA+TGG | + | chr1.3:2917091-2917110 | MS.gene26954:CDS | 40.0% | |
| GATTGTAGCTTAATCCAACC+AGG | + | chr1.3:2917861-2917880 | MS.gene26954:CDS | 40.0% | |
| GCCTTTGCATTCTCAATACT+CGG | - | chr1.3:2917085-2917104 | None:intergenic | 40.0% | |
| TACTTTATCCCTCGTGTACA+TGG | + | chr1.3:2916858-2916877 | MS.gene26954:intron | 40.0% | |
| TATTGTGTGTATTGTGCAGG+TGG | + | chr1.3:2916958-2916977 | MS.gene26954:intron | 40.0% | |
| TCATGAAAACTTCCAGCAGA+AGG | - | chr1.3:2916566-2916585 | None:intergenic | 40.0% | |
| TCCGATTACAATTCCGATTC+CGG | - | chr1.3:2916273-2916292 | None:intergenic | 40.0% | |
| TCGTCGTTATCTCCTTTGTA+AGG | - | chr1.3:2917055-2917074 | None:intergenic | 40.0% | |
| TTACAAAGGAGATAACGACG+AGG | + | chr1.3:2917054-2917073 | MS.gene26954:CDS | 40.0% | |
| TTCTACGGTTCATACGATGT+CGG | + | chr1.3:2916520-2916539 | MS.gene26954:CDS | 40.0% | |
| ! | ACTGGAGTTTTCGATACTTC+CGG | - | chr1.3:2917523-2917542 | None:intergenic | 40.0% |
| ! | CGAATATAGTACCGTTTTGC+AGG | + | chr1.3:2916586-2916605 | MS.gene26954:CDS | 40.0% |
| ! | GCATGGTTAGCTAATGTGTT+AGG | - | chr1.3:2917903-2917922 | None:intergenic | 40.0% |
| ! | GTTGTTGGACTTGGAACTTT+TGG | - | chr1.3:2917744-2917763 | None:intergenic | 40.0% |
| ! | TAGTGCTTTGTTGCTTAGAG+AGG | - | chr1.3:2917285-2917304 | None:intergenic | 40.0% |
| ! | TGATGATACTTGGTGGTTGA+AGG | - | chr1.3:2917424-2917443 | None:intergenic | 40.0% |
| !! | ACCGAGTATTGAGAATGCAA+AGG | + | chr1.3:2917081-2917100 | MS.gene26954:CDS | 40.0% |
| !! | GATTTTGGCAATTGAGAGTG+TGG | + | chr1.3:2918490-2918509 | MS.gene26954:intron | 40.0% |
| !! | GCTTTGTTTGGTGTAGAACT+TGG | - | chr1.3:2917565-2917584 | None:intergenic | 40.0% |
| !!! | GTATAGTCGGACTTTTTCGA+AGG | - | chr1.3:2916213-2916232 | None:intergenic | 40.0% |
| AACATCATCCTCATCACCGT+CGG | + | chr1.3:2916386-2916405 | MS.gene26954:CDS | 45.0% | |
| ACTTGACTCCATGTACACGA+GGG | - | chr1.3:2916869-2916888 | None:intergenic | 45.0% | |
| AGTATTTGCATCAACCCGAC+CGG | - | chr1.3:2916735-2916754 | None:intergenic | 45.0% | |
| ATCAGTGTTGTAAAGCCCGA+AGG | - | chr1.3:2917239-2917258 | None:intergenic | 45.0% | |
| ATCCAAGTTTCGCCAAAACC+TGG | + | chr1.3:2916327-2916346 | MS.gene26954:CDS | 45.0% | |
| ATTCATACCGGAGATACCAC+GGG | - | chr1.3:2917328-2917347 | None:intergenic | 45.0% | |
| ATTGTAATCGGAGCCGCAAA+CGG | + | chr1.3:2916281-2916300 | MS.gene26954:CDS | 45.0% | |
| CAAACGATGATCTATGACGC+TGG | + | chr1.3:2917259-2917278 | MS.gene26954:CDS | 45.0% | |
| CCATAGTTTACTCCGAGGAA+TGG | - | chr1.3:2916131-2916150 | None:intergenic | 45.0% | |
| CCATTCCTCGGAGTAAACTA+TGG | + | chr1.3:2916128-2916147 | MS.gene26954:CDS | 45.0% | |
| CGACAACAAACCCTGCAAAA+CGG | - | chr1.3:2916600-2916619 | None:intergenic | 45.0% | |
| CTTGATGAAGCTTCTCTTGG+TGG | + | chr1.3:2916485-2916504 | MS.gene26954:CDS | 45.0% | |
| GATTAAGCACCTGCGATCTA+AGG | + | chr1.3:2917120-2917139 | MS.gene26954:CDS | 45.0% | |
| GGATGTTGAGATTGTGGTTG+CGG | + | chr1.3:2917018-2917037 | MS.gene26954:CDS | 45.0% | |
| GTTGGCGAGGGATTTGATTA+TGG | - | chr1.3:2916249-2916268 | None:intergenic | 45.0% | |
| TACAATTCCGATTCCGGTGT+TGG | - | chr1.3:2916267-2916286 | None:intergenic | 45.0% | |
| TACTTGACTCCATGTACACG+AGG | - | chr1.3:2916870-2916889 | None:intergenic | 45.0% | |
| TATGATGAGGACTTGAAGCC+TGG | + | chr1.3:2917196-2917215 | MS.gene26954:CDS | 45.0% | |
| TCCTGGAAGGGCTGATAATT+TGG | + | chr1.3:2916685-2916704 | MS.gene26954:CDS | 45.0% | |
| TGAAAACTTCCAGCAGAAGG+TGG | - | chr1.3:2916563-2916582 | None:intergenic | 45.0% | |
| TGTAGCTTAATCCAACCAGG+AGG | + | chr1.3:2917864-2917883 | MS.gene26954:CDS | 45.0% | |
| TTATACGGCGTTGTTGGACT+TGG | - | chr1.3:2917753-2917772 | None:intergenic | 45.0% | |
| TTGGATTATGCTTGTGGGCA+GGG | + | chr1.3:2917834-2917853 | MS.gene26954:CDS | 45.0% | |
| TTTGGATTATGCTTGTGGGC+AGG | + | chr1.3:2917833-2917852 | MS.gene26954:CDS | 45.0% | |
| ! | ACTTGGTGGTTGAAGGTTCA+TGG | - | chr1.3:2917417-2917436 | None:intergenic | 45.0% |
| ! | GGATTTGATTATGGCGGGAT+CGG | - | chr1.3:2916240-2916259 | None:intergenic | 45.0% |
| !! | ATCCAGGTTTTGGCGAAACT+TGG | - | chr1.3:2916332-2916351 | None:intergenic | 45.0% |
| !! | GGTTTTGGCGAAACTTGGAT+CGG | - | chr1.3:2916327-2916346 | None:intergenic | 45.0% |
| !! | GTTGGTGGAAATCCAGGTTT+TGG | - | chr1.3:2916342-2916361 | None:intergenic | 45.0% |
| !! | TATGTGTCCACTGATTTCCC+TGG | - | chr1.3:2917163-2917182 | None:intergenic | 45.0% |
| !!! | TAGTCGGACTTTTTCGAAGG+CGG | - | chr1.3:2916210-2916229 | None:intergenic | 45.0% |
| AAAGGAGATAACGACGAGGC+TGG | + | chr1.3:2917058-2917077 | MS.gene26954:CDS | 50.0% | |
| ACTGATGCCAGGGAAATCAG+TGG | + | chr1.3:2917153-2917172 | MS.gene26954:CDS | 50.0% | |
| AGATTGTGGTTGCGGAGACA+GGG | + | chr1.3:2917026-2917045 | MS.gene26954:CDS | 50.0% | |
| AGTGATGACTTCGTTGCCGA+CGG | - | chr1.3:2916405-2916424 | None:intergenic | 50.0% | |
| ATAGTAAGGGAGGACGTTGG+TGG | - | chr1.3:2916357-2916376 | None:intergenic | 50.0% | |
| ATCAAATCCCTCGCCAACAC+CGG | + | chr1.3:2916251-2916270 | MS.gene26954:CDS | 50.0% | |
| ATGAGGATGATGTTGCTGGC+GGG | - | chr1.3:2916380-2916399 | None:intergenic | 50.0% | |
| ATGTTGCTGGCGGGATAGTA+AGG | - | chr1.3:2916371-2916390 | None:intergenic | 50.0% | |
| CAAAACAAGCACCTCCTGGT+TGG | - | chr1.3:2917878-2917897 | None:intergenic | 50.0% | |
| CTTGGCCATAGTTTACTCCG+AGG | - | chr1.3:2916136-2916155 | None:intergenic | 50.0% | |
| GAAACTTGGATCGGAAGCGA+GGG | - | chr1.3:2916318-2916337 | None:intergenic | 50.0% | |
| GATGAGGATGATGTTGCTGG+CGG | - | chr1.3:2916381-2916400 | None:intergenic | 50.0% | |
| GATTCATGGCGTATGCAGCA+TGG | - | chr1.3:2917920-2917939 | None:intergenic | 50.0% | |
| GCCAAATTATCAGCCCTTCC+AGG | - | chr1.3:2916689-2916708 | None:intergenic | 50.0% | |
| GCGAGGGATTTGATTATGGC+GGG | - | chr1.3:2916245-2916264 | None:intergenic | 50.0% | |
| GCGCTTGATGAAGCTTCTCT+TGG | + | chr1.3:2916482-2916501 | MS.gene26954:CDS | 50.0% | |
| GGCGAGGGATTTGATTATGG+CGG | - | chr1.3:2916246-2916265 | None:intergenic | 50.0% | |
| GGTGATGAGGATGATGTTGC+TGG | - | chr1.3:2916384-2916403 | None:intergenic | 50.0% | |
| GGTTCAAAACAAGCACCTCC+TGG | - | chr1.3:2917882-2917901 | None:intergenic | 50.0% | |
| TGGATTATGCTTGTGGGCAG+GGG | + | chr1.3:2917835-2917854 | MS.gene26954:CDS | 50.0% | |
| TGTTGCTGGCGGGATAGTAA+GGG | - | chr1.3:2916370-2916389 | None:intergenic | 50.0% | |
| TTCATACCGGAGATACCACG+GGG | - | chr1.3:2917327-2917346 | None:intergenic | 50.0% | |
| ! | AAGCACCTGCGATCTAAGGT+TGG | + | chr1.3:2917124-2917143 | MS.gene26954:CDS | 50.0% |
| ! | ACTGATTTCCCTGGCATCAG+TGG | - | chr1.3:2917154-2917173 | None:intergenic | 50.0% |
| ! | AGCACCTGCGATCTAAGGTT+GGG | + | chr1.3:2917125-2917144 | MS.gene26954:CDS | 50.0% |
| ! | TGCCTTTTCCAACCGAATGC+CGG | + | chr1.3:2916713-2916732 | MS.gene26954:CDS | 50.0% |
| ! | TTTTCCAACCGAATGCCGGT+CGG | + | chr1.3:2916717-2916736 | MS.gene26954:CDS | 50.0% |
| !! | CTGGTTCTGAGAAAGCCTTC+GGG | + | chr1.3:2917221-2917240 | MS.gene26954:CDS | 50.0% |
| !! | GCTGGTTCTGAGAAAGCCTT+CGG | + | chr1.3:2917220-2917239 | MS.gene26954:CDS | 50.0% |
| !! | GGTGGTTTGGAGGAGTTTTG+CGG | - | chr1.3:2916189-2916208 | None:intergenic | 50.0% |
| !!! | CTTTTTCGAAGGCGGTGGTT+TGG | - | chr1.3:2916202-2916221 | None:intergenic | 50.0% |
| ACGGGGCTACTAGTAGGTGT+AGG | - | chr1.3:2917310-2917329 | None:intergenic | 55.0% | |
| CCAGTGATTCCAGCACCAAC+AGG | + | chr1.3:2917538-2917557 | MS.gene26954:intron | 55.0% | |
| CGAAACTTGGATCGGAAGCG+AGG | - | chr1.3:2916319-2916338 | None:intergenic | 55.0% | |
| GACCGGCATTCGGTTGGAAA+AGG | - | chr1.3:2916718-2916737 | None:intergenic | 55.0% | |
| GAGATTGTGGTTGCGGAGAC+AGG | + | chr1.3:2917025-2917044 | MS.gene26954:CDS | 55.0% | |
| GATACCACGGGGCTACTAGT+AGG | - | chr1.3:2917316-2917335 | None:intergenic | 55.0% | |
| GCATGGTGTGTGCCAAAAGC+AGG | + | chr1.3:2917783-2917802 | MS.gene26954:CDS | 55.0% | |
| GCTTTCTCAGAACCAGCTCC+AGG | - | chr1.3:2917217-2917236 | None:intergenic | 55.0% | |
| GGATGCTGGTGGAAGGTTGT+CGG | - | chr1.3:2916162-2916181 | None:intergenic | 55.0% | |
| GGGATAGTAAGGGAGGACGT+TGG | - | chr1.3:2916360-2916379 | None:intergenic | 55.0% | |
| GGTGTAGAACTTGGGCCTGT+TGG | - | chr1.3:2917556-2917575 | None:intergenic | 55.0% | |
| GTGTCCCAACCTTAGATCGC+AGG | - | chr1.3:2917132-2917151 | None:intergenic | 55.0% | |
| TACACCTACTAGTAGCCCCG+TGG | + | chr1.3:2917309-2917328 | MS.gene26954:CDS | 55.0% | |
| TAGTAGCCCCGTGGTATCTC+CGG | + | chr1.3:2917318-2917337 | MS.gene26954:CDS | 55.0% | |
| TTGGGACACCACTGATGCCA+GGG | + | chr1.3:2917143-2917162 | MS.gene26954:CDS | 55.0% | |
| TTTCCAACCGAATGCCGGTC+GGG | + | chr1.3:2916718-2916737 | MS.gene26954:CDS | 55.0% | |
| ! | CGGGATCGGTTCCGTATAGT+CGG | - | chr1.3:2916226-2916245 | None:intergenic | 55.0% |
| ! | GAGACAGGGTGGCCTTACAA+AGG | + | chr1.3:2917040-2917059 | MS.gene26954:CDS | 55.0% |
| ! | GAGGACGTTGGTGGAAATCC+AGG | - | chr1.3:2916348-2916367 | None:intergenic | 55.0% |
| ! | GGTTTGGAGGAGTTTTGCGG+TGG | - | chr1.3:2916186-2916205 | None:intergenic | 55.0% |
| ! | TTGGAGGAGTTTTGCGGTGG+CGG | - | chr1.3:2916183-2916202 | None:intergenic | 55.0% |
| ! | TTTCGAAGGCGGTGGTTTGG+AGG | - | chr1.3:2916199-2916218 | None:intergenic | 55.0% |
| !! | CCTGTTGGTGCTGGAATCAC+TGG | - | chr1.3:2917541-2917560 | None:intergenic | 55.0% |
| !!! | TCGGACTTTTTCGAAGGCGG+TGG | - | chr1.3:2916207-2916226 | None:intergenic | 55.0% |
| AACTCGGAGCCACCTTCTGC+TGG | + | chr1.3:2916551-2916570 | MS.gene26954:CDS | 60.0% | |
| ACTTGGATCGGAAGCGAGGG+AGG | - | chr1.3:2916315-2916334 | None:intergenic | 60.0% | |
| CTTCGTTGCCGACGGTGATG+AGG | - | chr1.3:2916397-2916416 | None:intergenic | 60.0% | |
| CTTGGATCGGAAGCGAGGGA+GGG | - | chr1.3:2916314-2916333 | None:intergenic | 60.0% | |
| GAACTTGGGCCTGTTGGTGC+TGG | - | chr1.3:2917550-2917569 | None:intergenic | 60.0% | |
| GAGGACTTGAAGCCTGGAGC+TGG | + | chr1.3:2917202-2917221 | MS.gene26954:CDS | 60.0% | |
| GCATCAACCCGACCGGCATT+CGG | - | chr1.3:2916728-2916747 | None:intergenic | 60.0% | |
| GTGGAAGGTTGTCGGCGACT+TGG | - | chr1.3:2916154-2916173 | None:intergenic | 60.0% | |
| GTTGGGACACCACTGATGCC+AGG | + | chr1.3:2917142-2917161 | MS.gene26954:CDS | 60.0% | |
| TCCCTCGCCAACACCGGAAT+CGG | + | chr1.3:2916257-2916276 | MS.gene26954:CDS | 60.0% | |
| TGCTGGCGGGATAGTAAGGG+AGG | - | chr1.3:2916367-2916386 | None:intergenic | 60.0% | |
| TTGTGGTTGCGGAGACAGGG+TGG | + | chr1.3:2917029-2917048 | MS.gene26954:CDS | 60.0% | |
| ! | GGAGGGTATGTCGCCGTTTG+CGG | - | chr1.3:2916297-2916316 | None:intergenic | 60.0% |
| !! | TCCGATTCCGGTGTTGGCGA+GGG | - | chr1.3:2916261-2916280 | None:intergenic | 60.0% |
| !! | TTCCGATTCCGGTGTTGGCG+AGG | - | chr1.3:2916262-2916281 | None:intergenic | 60.0% |
| !!! | AGTTTTGCGGTGGCGGATGC+TGG | - | chr1.3:2916176-2916195 | None:intergenic | 60.0% |
| CAACCCGACCGGCATTCGGT+TGG | - | chr1.3:2916724-2916743 | None:intergenic | 65.0% | |
| !! | TTTGCGGTGGCGGATGCTGG+TGG | - | chr1.3:2916173-2916192 | None:intergenic | 65.0% |
| !! | CGGTGGCGGATGCTGGTGGA+AGG | - | chr1.3:2916169-2916188 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2916120 | 2918645 | 2916120 | ID=MS.gene26954 |
| chr1.3 | mRNA | 2916120 | 2918645 | 2916120 | ID=MS.gene26954.t1;Parent=MS.gene26954 |
| chr1.3 | exon | 2916120 | 2916787 | 2916120 | ID=MS.gene26954.t1.exon1;Parent=MS.gene26954.t1 |
| chr1.3 | CDS | 2916120 | 2916787 | 2916120 | ID=cds.MS.gene26954.t1;Parent=MS.gene26954.t1 |
| chr1.3 | exon | 2916977 | 2917339 | 2916977 | ID=MS.gene26954.t1.exon2;Parent=MS.gene26954.t1 |
| chr1.3 | CDS | 2916977 | 2917339 | 2916977 | ID=cds.MS.gene26954.t1;Parent=MS.gene26954.t1 |
| chr1.3 | exon | 2917702 | 2918017 | 2917702 | ID=MS.gene26954.t1.exon3;Parent=MS.gene26954.t1 |
| chr1.3 | CDS | 2917702 | 2918017 | 2917702 | ID=cds.MS.gene26954.t1;Parent=MS.gene26954.t1 |
| chr1.3 | exon | 2918608 | 2918645 | 2918608 | ID=MS.gene26954.t1.exon4;Parent=MS.gene26954.t1 |
| chr1.3 | CDS | 2918608 | 2918645 | 2918608 | ID=cds.MS.gene26954.t1;Parent=MS.gene26954.t1 |
| Gene Sequence |
| Protein sequence |
