Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26995.t1 | KEH40184.1 | 97.9 | 328 | 7 | 0 | 12 | 339 | 32 | 359 | 1.20E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26995.t1 | Q9FWS6 | 65.5 | 325 | 108 | 3 | 15 | 337 | 1 | 323 | 3.5e-119 | 429.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26995.t1 | A0A072VDT6 | 97.9 | 328 | 7 | 0 | 12 | 339 | 32 | 359 | 8.5e-183 | 649.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058120 | MS.gene26995 | 0.813651 | 2.30E-51 | -1.69E-46 |
| MS.gene058948 | MS.gene26995 | 0.841478 | 4.64E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26995.t1 | MTR_1g022485 | 97.866 | 328 | 7 | 0 | 12 | 339 | 32 | 359 | 0.0 | 670 |
| MS.gene26995.t1 | MTR_3g112160 | 71.125 | 329 | 83 | 2 | 14 | 339 | 3 | 322 | 2.30e-166 | 466 |
| MS.gene26995.t1 | MTR_3g112160 | 69.456 | 239 | 61 | 2 | 14 | 249 | 3 | 232 | 1.48e-113 | 329 |
| MS.gene26995.t1 | MTR_5g023110 | 33.514 | 185 | 116 | 4 | 148 | 330 | 141 | 320 | 6.03e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26995.t1 | AT1G75380 | 65.538 | 325 | 108 | 3 | 15 | 337 | 1 | 323 | 3.62e-159 | 448 |
| MS.gene26995.t1 | AT1G75380 | 65.538 | 325 | 108 | 3 | 15 | 337 | 1 | 323 | 3.62e-159 | 448 |
| MS.gene26995.t1 | AT1G75380 | 65.538 | 325 | 108 | 3 | 15 | 337 | 1 | 323 | 3.62e-159 | 448 |
| MS.gene26995.t1 | AT1G75380 | 65.538 | 325 | 108 | 3 | 15 | 337 | 1 | 323 | 3.62e-159 | 448 |
| MS.gene26995.t1 | AT1G19660 | 62.500 | 328 | 117 | 3 | 15 | 337 | 1 | 327 | 1.70e-152 | 431 |
| MS.gene26995.t1 | AT1G19660 | 62.500 | 328 | 117 | 3 | 15 | 337 | 1 | 327 | 1.70e-152 | 431 |
| MS.gene26995.t1 | AT1G19660 | 63.987 | 311 | 106 | 3 | 15 | 320 | 1 | 310 | 1.81e-145 | 414 |
| MS.gene26995.t1 | AT5G66050 | 37.705 | 183 | 106 | 5 | 147 | 327 | 49 | 225 | 3.61e-27 | 107 |
| MS.gene26995.t1 | AT5G66050 | 37.705 | 183 | 106 | 5 | 147 | 327 | 143 | 319 | 1.23e-26 | 107 |
| MS.gene26995.t1 | AT5G66050 | 37.705 | 183 | 106 | 5 | 147 | 327 | 143 | 319 | 1.33e-26 | 108 |
| MS.gene26995.t1 | AT5G66050 | 34.706 | 170 | 103 | 5 | 147 | 314 | 143 | 306 | 1.92e-18 | 85.1 |
Find 73 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGAATGGCTTCTCTTAA+AGG | 0.223961 | 1.3:+2408195 | MS.gene26995:CDS |
| GATGGAGATGATTGACAAAA+TGG | 0.281544 | 1.3:+2409168 | MS.gene26995:CDS |
| CGGTCGATTATTTACTGAAA+TGG | 0.286593 | 1.3:+2409826 | MS.gene26995:CDS |
| AAAGACATACAAACAATTAT+AGG | 0.305774 | 1.3:-2408794 | None:intergenic |
| GATGTGTTAGAACTGAGTTT+TGG | 0.317329 | 1.3:+2408295 | MS.gene26995:CDS |
| TCTATTCATCCTAAAGTTGC+AGG | 0.331622 | 1.3:+2408234 | MS.gene26995:CDS |
| TTCTGCACCCTTCCTATGAT+TGG | 0.348033 | 1.3:+2408258 | MS.gene26995:CDS |
| GTGCAGAACCCTGCAACTTT+AGG | 0.356945 | 1.3:-2408243 | None:intergenic |
| TCAGCACAAGGTTGACCATT+TGG | 0.367572 | 1.3:-2409965 | None:intergenic |
| CTAACACATCTAACATTCAT+TGG | 0.404358 | 1.3:-2408282 | None:intergenic |
| ACATTCATTGGTCCAATCAT+AGG | 0.408348 | 1.3:-2408270 | None:intergenic |
| AAGTACTTGTTGACTTGTAT+TGG | 0.414348 | 1.3:-2409737 | None:intergenic |
| TGCAACTTTAGGATGAATAG+AGG | 0.422092 | 1.3:-2408232 | None:intergenic |
| CTCCAGCATTGTGGAGGGAC+AGG | 0.429857 | 1.3:+2410399 | MS.gene26995:intron |
| GGAATGAGAGTAATTGAATC+AGG | 0.437048 | 1.3:+2409773 | MS.gene26995:CDS |
| TTGAAAATGGAAGATGGGTC+TGG | 0.444298 | 1.3:+2408761 | MS.gene26995:CDS |
| AATAATCGACCGTCAAAACT+AGG | 0.444954 | 1.3:-2409815 | None:intergenic |
| TGCTCTTCCGCGTGTTTATG+TGG | 0.449054 | 1.3:-2408353 | None:intergenic |
| GACCTCCCTGAGGATTGTTA+TGG | 0.464181 | 1.3:-2408703 | None:intergenic |
| GGGGACTCAAGGAATTTAAG+AGG | 0.465907 | 1.3:+2408316 | MS.gene26995:CDS |
| GCGGGATGTGGTGAATAATC+AGG | 0.466253 | 1.3:-2408731 | None:intergenic |
| TGAATAGAGGGACACACAAC+TGG | 0.466754 | 1.3:-2408219 | None:intergenic |
| GAGGTGAAGAGTGGAGCAGA+TGG | 0.472687 | 1.3:+2408638 | MS.gene26995:CDS |
| CATGCTTCCACCATCATTCG+AGG | 0.484631 | 1.3:-2408406 | None:intergenic |
| AATTACTCTCATTCCATCAC+TGG | 0.485713 | 1.3:-2409765 | None:intergenic |
| TCAGACTTGTCAGAGTTACT+AGG | 0.488968 | 1.3:+2409289 | MS.gene26995:CDS |
| TTAAATTCACCCTCGAATGA+TGG | 0.490152 | 1.3:+2408396 | MS.gene26995:CDS |
| GATGCCAAGCGTCTTACTAC+TGG | 0.490820 | 1.3:+2408927 | MS.gene26995:CDS |
| ATGTGTCCATAACAATCCTC+AGG | 0.496470 | 1.3:+2408697 | MS.gene26995:CDS |
| TTTGGTATAGGTTGGAAATG+AGG | 0.505315 | 1.3:+2409450 | MS.gene26995:intron |
| GCGTGTTTATGTGGTAAGAA+AGG | 0.507066 | 1.3:-2408344 | None:intergenic |
| TGACATCATTGCAGGCCAAA+TGG | 0.511678 | 1.3:+2409950 | MS.gene26995:intron |
| TTCAAAACCATAGCGGGATG+TGG | 0.522034 | 1.3:-2408743 | None:intergenic |
| TTCATAATCAAAATGAGGGA+TGG | 0.534500 | 1.3:+2408662 | MS.gene26995:CDS |
| ATGGTTTCATAATCAAAATG+AGG | 0.535720 | 1.3:+2408657 | MS.gene26995:CDS |
| AGTTCAAGTGTGATTGAAGC+CGG | 0.535784 | 1.3:+2408465 | MS.gene26995:CDS |
| AAGTACTTGGCGTCCAGTGA+TGG | 0.538274 | 1.3:+2409752 | MS.gene26995:CDS |
| TTATTCACCACATCCCGCTA+TGG | 0.543012 | 1.3:+2408736 | MS.gene26995:CDS |
| ATGGAGATGATTGACAAAAT+GGG | 0.546253 | 1.3:+2409169 | MS.gene26995:CDS |
| TACGTTATATGAAGTAGTGA+TGG | 0.552296 | 1.3:+2409150 | MS.gene26995:CDS |
| CTCGAATGATGGTGGAAGCA+TGG | 0.558808 | 1.3:+2408407 | MS.gene26995:CDS |
| AATTCACCCTCGAATGATGG+TGG | 0.570475 | 1.3:+2408399 | MS.gene26995:CDS |
| GGGACAGGCTTAATCAACAT+AGG | 0.571885 | 1.3:+2410414 | MS.gene26995:CDS |
| TCATTGGTCCAATCATAGGA+AGG | 0.576848 | 1.3:-2408266 | None:intergenic |
| CTATTCATCCTAAAGTTGCA+GGG | 0.578397 | 1.3:+2408235 | MS.gene26995:CDS |
| TGCTCAGTTGTATCTTACCA+AGG | 0.579022 | 1.3:+2409332 | MS.gene26995:CDS |
| AATACAAGTCAACAAGTACT+TGG | 0.579849 | 1.3:+2409739 | MS.gene26995:CDS |
| AGGCTTAATCAACATAGGGC+TGG | 0.580254 | 1.3:+2410419 | MS.gene26995:CDS |
| AATTCATCAGTTTCAGCACA+AGG | 0.582528 | 1.3:-2409977 | None:intergenic |
| TTTGTCATTGATGAATTCTG+TGG | 0.585238 | 1.3:+2408085 | MS.gene26995:CDS |
| GCTGCCAGTAGTAAGACGCT+TGG | 0.586641 | 1.3:-2408931 | None:intergenic |
| ATAATCGACCGTCAAAACTA+GGG | 0.595399 | 1.3:-2409814 | None:intergenic |
| ATGCAACTCCAGCATTGTGG+AGG | 0.595666 | 1.3:+2410393 | MS.gene26995:intron |
| TTGGAAATGAGGCAGAATGT+AGG | 0.599379 | 1.3:+2409461 | MS.gene26995:CDS |
| CTGATGCAACTCCAGCATTG+TGG | 0.599713 | 1.3:+2410390 | MS.gene26995:intron |
| GGACAGGCTTAATCAACATA+GGG | 0.600030 | 1.3:+2410415 | MS.gene26995:CDS |
| CAATATTGCAGTAAGATGCA+AGG | 0.620500 | 1.3:+2409513 | MS.gene26995:CDS |
| TGATAGCATCAGAAGGTCGA+AGG | 0.622485 | 1.3:-2409492 | None:intergenic |
| TGGTTTCATAATCAAAATGA+GGG | 0.623930 | 1.3:+2408658 | MS.gene26995:CDS |
| GAAGAGCGTTACGATGATGC+CGG | 0.630135 | 1.3:+2410034 | MS.gene26995:CDS |
| AGTTACTAGGAGAGTCGATG+AGG | 0.631695 | 1.3:+2409302 | MS.gene26995:CDS |
| GCAATATTGATAGCATCAGA+AGG | 0.632049 | 1.3:-2409499 | None:intergenic |
| TGCAACTCCAGCATTGTGGA+GGG | 0.635561 | 1.3:+2410394 | MS.gene26995:intron |
| ATGCTTCCACCATCATTCGA+GGG | 0.638323 | 1.3:-2408405 | None:intergenic |
| CATTGGTCCAATCATAGGAA+GGG | 0.639201 | 1.3:-2408265 | None:intergenic |
| TCAAAACTAGGGATCTGCGT+TGG | 0.642657 | 1.3:-2409803 | None:intergenic |
| TGACTAGTTGAGGTGAAGAG+TGG | 0.642688 | 1.3:+2408629 | MS.gene26995:intron |
| GCAACTTTAGGATGAATAGA+GGG | 0.651301 | 1.3:-2408231 | None:intergenic |
| TGTGTCCATAACAATCCTCA+GGG | 0.669670 | 1.3:+2408698 | MS.gene26995:CDS |
| ATCACTACTTCATATAACGT+AGG | 0.707367 | 1.3:-2409148 | None:intergenic |
| GTCCATAACAATCCTCAGGG+AGG | 0.723950 | 1.3:+2408701 | MS.gene26995:CDS |
| TTTCTTACCACATAAACACG+CGG | 0.767118 | 1.3:+2408346 | MS.gene26995:CDS |
| TCAGGAAGATGACCTCCCTG+AGG | 0.767271 | 1.3:-2408713 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATGATTAAACACATATA+GGG | - | chr1.3:2408826-2408845 | None:intergenic | 15.0% |
| !! | TTATATGATTAAACACATAT+AGG | - | chr1.3:2408827-2408846 | None:intergenic | 15.0% |
| !!! | ATGTTTATGTCATATTTTTA+GGG | - | chr1.3:2409391-2409410 | None:intergenic | 15.0% |
| !!! | TTCTAATCCTATTTTTATTT+TGG | + | chr1.3:2409233-2409252 | MS.gene26995:intron | 15.0% |
| !!! | TTTATATGACAATTTTTCAA+AGG | + | chr1.3:2410473-2410492 | MS.gene26995:intron | 15.0% |
| !! | AAAGACATACAAACAATTAT+AGG | - | chr1.3:2408797-2408816 | None:intergenic | 20.0% |
| !! | GAAAAGACCAAAATAAAAAT+AGG | - | chr1.3:2409243-2409262 | None:intergenic | 20.0% |
| !! | TGATGATATATATTTGGTAT+AGG | + | chr1.3:2409438-2409457 | MS.gene26995:intron | 20.0% |
| !!! | ATCATATAAGTTTAGTTCTT+TGG | + | chr1.3:2408838-2408857 | MS.gene26995:intron | 20.0% |
| !!! | CATGTTTATGTCATATTTTT+AGG | - | chr1.3:2409392-2409411 | None:intergenic | 20.0% |
| !!! | TCAAGCATTTTACTATTTTA+CGG | + | chr1.3:2409702-2409721 | MS.gene26995:intron | 20.0% |
| ! | ATGGTTTCATAATCAAAATG+AGG | + | chr1.3:2408657-2408676 | MS.gene26995:CDS | 25.0% |
| ! | GATATATATTTGGTATAGGT+TGG | + | chr1.3:2409442-2409461 | MS.gene26995:intron | 25.0% |
| ! | TACGAGTGATGATATATATT+TGG | + | chr1.3:2409432-2409451 | MS.gene26995:intron | 25.0% |
| ! | TGGTTTCATAATCAAAATGA+GGG | + | chr1.3:2408658-2408677 | MS.gene26995:CDS | 25.0% |
| !! | CAAATTCCATATTTCTTTTG+TGG | + | chr1.3:2410314-2410333 | MS.gene26995:intron | 25.0% |
| !! | TCTTTACCATTGTAATTTTC+TGG | + | chr1.3:2408883-2408902 | MS.gene26995:intron | 25.0% |
| !! | TGAAATAACTTGTACTCATA+AGG | + | chr1.3:2409862-2409881 | MS.gene26995:intron | 25.0% |
| !!! | GCTTAATTTTATTTTGTTGC+AGG | + | chr1.3:2410509-2410528 | MS.gene26995:intron | 25.0% |
| !!! | TAGTATTTTGTTTACTAGCA+TGG | + | chr1.3:2408552-2408571 | MS.gene26995:intron | 25.0% |
| !!! | TATGTCATATTTTTAGGGTT+GGG | - | chr1.3:2409386-2409405 | None:intergenic | 25.0% |
| !!! | TATTTTCTTTTGGTGTTTGT+AGG | + | chr1.3:2408170-2408189 | MS.gene26995:intron | 25.0% |
| !!! | TTATGTCATATTTTTAGGGT+TGG | - | chr1.3:2409387-2409406 | None:intergenic | 25.0% |
| !!! | TTTGATGTTTTTGCTCTTAT+TGG | + | chr1.3:2410176-2410195 | MS.gene26995:intron | 25.0% |
| AATACAAGTCAACAAGTACT+TGG | + | chr1.3:2409739-2409758 | MS.gene26995:CDS | 30.0% | |
| AATCAGAAGACTGTAATTAC+CGG | - | chr1.3:2410056-2410075 | None:intergenic | 30.0% | |
| ATCACTACTTCATATAACGT+AGG | - | chr1.3:2409151-2409170 | None:intergenic | 30.0% | |
| ATGGAGATGATTGACAAAAT+GGG | + | chr1.3:2409169-2409188 | MS.gene26995:CDS | 30.0% | |
| CTAACACATCTAACATTCAT+TGG | - | chr1.3:2408285-2408304 | None:intergenic | 30.0% | |
| CTGGTAAAAACATGAAAAGA+AGG | + | chr1.3:2410438-2410457 | MS.gene26995:CDS | 30.0% | |
| GAAAGAAACAGAATCATACT+TGG | - | chr1.3:2409198-2409217 | None:intergenic | 30.0% | |
| GACATTCCAGAAAATTACAA+TGG | - | chr1.3:2408892-2408911 | None:intergenic | 30.0% | |
| TACGTTATATGAAGTAGTGA+TGG | + | chr1.3:2409150-2409169 | MS.gene26995:CDS | 30.0% | |
| TCTAGTCCACAAAAGAAATA+TGG | - | chr1.3:2410323-2410342 | None:intergenic | 30.0% | |
| TTATATATCTCAGAAGAACG+AGG | - | chr1.3:2409039-2409058 | None:intergenic | 30.0% | |
| TTCATAATCAAAATGAGGGA+TGG | + | chr1.3:2408662-2408681 | MS.gene26995:CDS | 30.0% | |
| TTTGTCATTGATGAATTCTG+TGG | + | chr1.3:2408085-2408104 | MS.gene26995:CDS | 30.0% | |
| ! | ATGTGTTAGAACTGAGTTTT+GGG | + | chr1.3:2408296-2408315 | MS.gene26995:CDS | 30.0% |
| ! | TGATGATGTATTCAGATGTA+TGG | - | chr1.3:2409553-2409572 | None:intergenic | 30.0% |
| ! | TTCCATTTTCAAAACCATAG+CGG | - | chr1.3:2408753-2408772 | None:intergenic | 30.0% |
| !! | AAGTACTTGTTGACTTGTAT+TGG | - | chr1.3:2409740-2409759 | None:intergenic | 30.0% |
| !! | TCGACATGGTTATTTTCTTT+TGG | + | chr1.3:2408160-2408179 | MS.gene26995:intron | 30.0% |
| !!! | ATGGTTTTGAAAATGGAAGA+TGG | + | chr1.3:2408755-2408774 | MS.gene26995:CDS | 30.0% |
| !!! | ATTTTTTTTCCCTGCAATAC+TGG | + | chr1.3:2409642-2409661 | MS.gene26995:intron | 30.0% |
| !!! | TGGTTTTGAAAATGGAAGAT+GGG | + | chr1.3:2408756-2408775 | MS.gene26995:CDS | 30.0% |
| AAAAATCAAGCCGTCATGTA+TGG | - | chr1.3:2409628-2409647 | None:intergenic | 35.0% | |
| AAGTCTTGACAAACATGTGA+CGG | - | chr1.3:2409011-2409030 | None:intergenic | 35.0% | |
| AATAATCGACCGTCAAAACT+AGG | - | chr1.3:2409818-2409837 | None:intergenic | 35.0% | |
| AATTACTCTCATTCCATCAC+TGG | - | chr1.3:2409768-2409787 | None:intergenic | 35.0% | |
| AATTCATCAGTTTCAGCACA+AGG | - | chr1.3:2409980-2409999 | None:intergenic | 35.0% | |
| ACATAGAACCAGAATCTTTC+TGG | - | chr1.3:2409080-2409099 | None:intergenic | 35.0% | |
| ACATTCATTGGTCCAATCAT+AGG | - | chr1.3:2408273-2408292 | None:intergenic | 35.0% | |
| ATAATCGACCGTCAAAACTA+GGG | - | chr1.3:2409817-2409836 | None:intergenic | 35.0% | |
| ATCATTGTTGCCATACATGA+CGG | + | chr1.3:2409615-2409634 | MS.gene26995:intron | 35.0% | |
| CAATATTGCAGTAAGATGCA+AGG | + | chr1.3:2409513-2409532 | MS.gene26995:CDS | 35.0% | |
| CATGTAGTAGCTAAACATAC+CGG | - | chr1.3:2408487-2408506 | None:intergenic | 35.0% | |
| CCAAGATAATAATGTCGACA+TGG | + | chr1.3:2408146-2408165 | MS.gene26995:intron | 35.0% | |
| CCATGTCGACATTATTATCT+TGG | - | chr1.3:2408149-2408168 | None:intergenic | 35.0% | |
| CGGTCGATTATTTACTGAAA+TGG | + | chr1.3:2409826-2409845 | MS.gene26995:CDS | 35.0% | |
| CTATTCATCCTAAAGTTGCA+GGG | + | chr1.3:2408235-2408254 | MS.gene26995:CDS | 35.0% | |
| GATGGAGATGATTGACAAAA+TGG | + | chr1.3:2409168-2409187 | MS.gene26995:CDS | 35.0% | |
| GGAATGAGAGTAATTGAATC+AGG | + | chr1.3:2409773-2409792 | MS.gene26995:CDS | 35.0% | |
| TCTATTCATCCTAAAGTTGC+AGG | + | chr1.3:2408234-2408253 | MS.gene26995:CDS | 35.0% | |
| TGTTAACTTTCCTCTTGGAT+GGG | + | chr1.3:2410214-2410233 | MS.gene26995:intron | 35.0% | |
| TGTTTGATCCAGAAAGATTC+TGG | + | chr1.3:2409069-2409088 | MS.gene26995:intron | 35.0% | |
| TTAAATTCACCCTCGAATGA+TGG | + | chr1.3:2408396-2408415 | MS.gene26995:CDS | 35.0% | |
| TTGAGAATGGCTTCTCTTAA+AGG | + | chr1.3:2408195-2408214 | MS.gene26995:CDS | 35.0% | |
| TTGTTAACTTTCCTCTTGGA+TGG | + | chr1.3:2410213-2410232 | MS.gene26995:intron | 35.0% | |
| TTTCTTACCACATAAACACG+CGG | + | chr1.3:2408346-2408365 | MS.gene26995:CDS | 35.0% | |
| TTTGTTCGTACGCTAGTTAT+AGG | + | chr1.3:2410148-2410167 | MS.gene26995:intron | 35.0% | |
| ! | ATTTTCCATCCAGTATTGCA+GGG | - | chr1.3:2409654-2409673 | None:intergenic | 35.0% |
| ! | GATGTGTTAGAACTGAGTTT+TGG | + | chr1.3:2408295-2408314 | MS.gene26995:CDS | 35.0% |
| ! | GCAATATTGATAGCATCAGA+AGG | - | chr1.3:2409502-2409521 | None:intergenic | 35.0% |
| ! | TACTATTTTACGGATGACAC+AGG | + | chr1.3:2409712-2409731 | MS.gene26995:intron | 35.0% |
| ! | TCCATTTTCAAAACCATAGC+GGG | - | chr1.3:2408752-2408771 | None:intergenic | 35.0% |
| ! | TGATGTCACTTGTAGTTAAG+AGG | - | chr1.3:2409938-2409957 | None:intergenic | 35.0% |
| ! | TGGAATGTCTTTATTTGCAG+TGG | + | chr1.3:2408903-2408922 | MS.gene26995:intron | 35.0% |
| ! | TGTGTTAGAACTGAGTTTTG+GGG | + | chr1.3:2408297-2408316 | MS.gene26995:CDS | 35.0% |
| ! | TTTGGTATAGGTTGGAAATG+AGG | + | chr1.3:2409450-2409469 | MS.gene26995:intron | 35.0% |
| !! | CAACTTGTTAACTTTCCTCT+TGG | + | chr1.3:2410209-2410228 | MS.gene26995:intron | 35.0% |
| !! | GCAACTTTAGGATGAATAGA+GGG | - | chr1.3:2408234-2408253 | None:intergenic | 35.0% |
| !! | GTGATTTTGTTGACTAGTTG+AGG | + | chr1.3:2408619-2408638 | MS.gene26995:intron | 35.0% |
| !! | TGCAACTTTAGGATGAATAG+AGG | - | chr1.3:2408235-2408254 | None:intergenic | 35.0% |
| !!! | GTGTTTGTAGGTTTTGAGAA+TGG | + | chr1.3:2408182-2408201 | MS.gene26995:intron | 35.0% |
| !!! | TCATATTTTTAGGGTTGGGA+GGG | - | chr1.3:2409382-2409401 | None:intergenic | 35.0% |
| ACTACAAGTGACATCATTGC+AGG | + | chr1.3:2409942-2409961 | MS.gene26995:intron | 40.0% | |
| AGTTCAAGTGTGATTGAAGC+CGG | + | chr1.3:2408465-2408484 | MS.gene26995:CDS | 40.0% | |
| AGTTGCATCAGAAACATGAG+AGG | - | chr1.3:2410381-2410400 | None:intergenic | 40.0% | |
| ATAACAAGACCCTCTCATGT+TGG | - | chr1.3:2410259-2410278 | None:intergenic | 40.0% | |
| ATGTGTCCATAACAATCCTC+AGG | + | chr1.3:2408697-2408716 | MS.gene26995:CDS | 40.0% | |
| ATGTTACTCTCCAACATGAG+AGG | + | chr1.3:2410246-2410265 | MS.gene26995:intron | 40.0% | |
| CACTATTTGGTTGCTGTATC+AGG | + | chr1.3:2409120-2409139 | MS.gene26995:intron | 40.0% | |
| CATTGGTCCAATCATAGGAA+GGG | - | chr1.3:2408268-2408287 | None:intergenic | 40.0% | |
| GCGTGTTTATGTGGTAAGAA+AGG | - | chr1.3:2408347-2408366 | None:intergenic | 40.0% | |
| GGACAGGCTTAATCAACATA+GGG | + | chr1.3:2410415-2410434 | MS.gene26995:CDS | 40.0% | |
| GTTAACTTTCCTCTTGGATG+GGG | + | chr1.3:2410215-2410234 | MS.gene26995:intron | 40.0% | |
| TAGCGTACGAACAAAATCAC+TGG | - | chr1.3:2410143-2410162 | None:intergenic | 40.0% | |
| TCAGACTTGTCAGAGTTACT+AGG | + | chr1.3:2409289-2409308 | MS.gene26995:CDS | 40.0% | |
| TCATTGGTCCAATCATAGGA+AGG | - | chr1.3:2408269-2408288 | None:intergenic | 40.0% | |
| TGCTCAGTTGTATCTTACCA+AGG | + | chr1.3:2409332-2409351 | MS.gene26995:CDS | 40.0% | |
| TGTGTCCATAACAATCCTCA+GGG | + | chr1.3:2408698-2408717 | MS.gene26995:CDS | 40.0% | |
| TGTTACTCTCCAACATGAGA+GGG | + | chr1.3:2410247-2410266 | MS.gene26995:intron | 40.0% | |
| TTGAAAATGGAAGATGGGTC+TGG | + | chr1.3:2408761-2408780 | MS.gene26995:CDS | 40.0% | |
| TTGGAAATGAGGCAGAATGT+AGG | + | chr1.3:2409461-2409480 | MS.gene26995:CDS | 40.0% | |
| ! | GATTTTCCATCCAGTATTGC+AGG | - | chr1.3:2409655-2409674 | None:intergenic | 40.0% |
| ! | TTTTTCCCTGCAATACTGGA+TGG | + | chr1.3:2409646-2409665 | MS.gene26995:intron | 40.0% |
| !!! | GTCATATTTTTAGGGTTGGG+AGG | - | chr1.3:2409383-2409402 | None:intergenic | 40.0% |
| !!! | TCCCGCTATGGTTTTGAAAA+TGG | + | chr1.3:2408748-2408767 | MS.gene26995:CDS | 40.0% |
| AATTCACCCTCGAATGATGG+TGG | + | chr1.3:2408399-2408418 | MS.gene26995:CDS | 45.0% | |
| AGGCGTATTTCACGAAGCAA+AGG | - | chr1.3:2409918-2409937 | None:intergenic | 45.0% | |
| AGGCTTAATCAACATAGGGC+TGG | + | chr1.3:2410419-2410438 | MS.gene26995:CDS | 45.0% | |
| AGTTACTAGGAGAGTCGATG+AGG | + | chr1.3:2409302-2409321 | MS.gene26995:CDS | 45.0% | |
| ATGCTTCCACCATCATTCGA+GGG | - | chr1.3:2408408-2408427 | None:intergenic | 45.0% | |
| CCAAATAGTGAGAATCAGCG+TGG | - | chr1.3:2409110-2409129 | None:intergenic | 45.0% | |
| GGAGTACAGAGTAAATGCCT+TGG | - | chr1.3:2409352-2409371 | None:intergenic | 45.0% | |
| GGGACAGGCTTAATCAACAT+AGG | + | chr1.3:2410414-2410433 | MS.gene26995:CDS | 45.0% | |
| GGGGACTCAAGGAATTTAAG+AGG | + | chr1.3:2408316-2408335 | MS.gene26995:CDS | 45.0% | |
| TCAAAACTAGGGATCTGCGT+TGG | - | chr1.3:2409806-2409825 | None:intergenic | 45.0% | |
| TCAGCACAAGGTTGACCATT+TGG | - | chr1.3:2409968-2409987 | None:intergenic | 45.0% | |
| TCATCACTCGTAAGCACTAG+AGG | - | chr1.3:2409424-2409443 | None:intergenic | 45.0% | |
| TGAATAGAGGGACACACAAC+TGG | - | chr1.3:2408222-2408241 | None:intergenic | 45.0% | |
| TGACATCATTGCAGGCCAAA+TGG | + | chr1.3:2409950-2409969 | MS.gene26995:intron | 45.0% | |
| TGATAGCATCAGAAGGTCGA+AGG | - | chr1.3:2409495-2409514 | None:intergenic | 45.0% | |
| TTATTCACCACATCCCGCTA+TGG | + | chr1.3:2408736-2408755 | MS.gene26995:CDS | 45.0% | |
| TTCTGCACCCTTCCTATGAT+TGG | + | chr1.3:2408258-2408277 | MS.gene26995:CDS | 45.0% | |
| TTTACTAGCATGGTTGCACG+AGG | + | chr1.3:2408562-2408581 | MS.gene26995:intron | 45.0% | |
| TTTGGTTGCTGTATCAGGCT+AGG | + | chr1.3:2409125-2409144 | MS.gene26995:intron | 45.0% | |
| ! | TGACTAGTTGAGGTGAAGAG+TGG | + | chr1.3:2408629-2408648 | MS.gene26995:intron | 45.0% |
| ! | TTCAAAACCATAGCGGGATG+TGG | - | chr1.3:2408746-2408765 | None:intergenic | 45.0% |
| !! | CCACGCTGATTCTCACTATT+TGG | + | chr1.3:2409107-2409126 | MS.gene26995:intron | 45.0% |
| !!! | AACTGAGTTTTGGGGACTCA+AGG | + | chr1.3:2408305-2408324 | MS.gene26995:CDS | 45.0% |
| !!! | ACGCAGATCCCTAGTTTTGA+CGG | + | chr1.3:2409806-2409825 | MS.gene26995:CDS | 45.0% |
| !!! | TATTTTTAGGGTTGGGAGGG+AGG | - | chr1.3:2409379-2409398 | None:intergenic | 45.0% |
| AAGTACTTGGCGTCCAGTGA+TGG | + | chr1.3:2409752-2409771 | MS.gene26995:CDS | 50.0% | |
| AAGTCTGACCTGCAGAAGCA+CGG | - | chr1.3:2409277-2409296 | None:intergenic | 50.0% | |
| ATGCAACTCCAGCATTGTGG+AGG | + | chr1.3:2410393-2410412 | MS.gene26995:intron | 50.0% | |
| ATGTCATTCCGTGCTTCTGC+AGG | + | chr1.3:2409266-2409285 | MS.gene26995:intron | 50.0% | |
| CATGCTTCCACCATCATTCG+AGG | - | chr1.3:2408409-2408428 | None:intergenic | 50.0% | |
| CATTGCATTCTCCTACGGCT+TGG | + | chr1.3:2409581-2409600 | MS.gene26995:intron | 50.0% | |
| CTGATGCAACTCCAGCATTG+TGG | + | chr1.3:2410390-2410409 | MS.gene26995:intron | 50.0% | |
| GACCTCCCTGAGGATTGTTA+TGG | - | chr1.3:2408706-2408725 | None:intergenic | 50.0% | |
| GATGCCAAGCGTCTTACTAC+TGG | + | chr1.3:2408927-2408946 | MS.gene26995:CDS | 50.0% | |
| GCGCACATTGCATTCTCCTA+CGG | + | chr1.3:2409576-2409595 | MS.gene26995:intron | 50.0% | |
| GCGGGATGTGGTGAATAATC+AGG | - | chr1.3:2408734-2408753 | None:intergenic | 50.0% | |
| GTCCATAACAATCCTCAGGG+AGG | + | chr1.3:2408701-2408720 | MS.gene26995:CDS | 50.0% | |
| GTGCAGAACCCTGCAACTTT+AGG | - | chr1.3:2408246-2408265 | None:intergenic | 50.0% | |
| GTTGCACGAGGTTCGTCTTT+AGG | + | chr1.3:2408574-2408593 | MS.gene26995:intron | 50.0% | |
| TAACTGTCAAGCCAAGCCGT+AGG | - | chr1.3:2409595-2409614 | None:intergenic | 50.0% | |
| TGACAGAAACCCCATCCAAG+AGG | - | chr1.3:2410227-2410246 | None:intergenic | 50.0% | |
| TGCAACTCCAGCATTGTGGA+GGG | + | chr1.3:2410394-2410413 | MS.gene26995:intron | 50.0% | |
| TGCTCTTCCGCGTGTTTATG+TGG | - | chr1.3:2408356-2408375 | None:intergenic | 50.0% | |
| !! | CTCGAATGATGGTGGAAGCA+TGG | + | chr1.3:2408407-2408426 | MS.gene26995:CDS | 50.0% |
| !! | GAAGAGCGTTACGATGATGC+CGG | + | chr1.3:2410034-2410053 | MS.gene26995:CDS | 50.0% |
| GAGGTGAAGAGTGGAGCAGA+TGG | + | chr1.3:2408638-2408657 | MS.gene26995:CDS | 55.0% | |
| GCTGCCAGTAGTAAGACGCT+TGG | - | chr1.3:2408934-2408953 | None:intergenic | 55.0% | |
| TAGGGTTGGGAGGGAGGATA+AGG | - | chr1.3:2409373-2409392 | None:intergenic | 55.0% | |
| TCAGGAAGATGACCTCCCTG+AGG | - | chr1.3:2408716-2408735 | None:intergenic | 55.0% | |
| AGCCTGTCCCTCCACAATGC+TGG | - | chr1.3:2410404-2410423 | None:intergenic | 60.0% | |
| CTCCAGCATTGTGGAGGGAC+AGG | + | chr1.3:2410399-2410418 | MS.gene26995:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2408076 | 2410537 | 2408076 | ID=MS.gene26995 |
| chr1.3 | mRNA | 2408076 | 2410537 | 2408076 | ID=MS.gene26995.t1;Parent=MS.gene26995 |
| chr1.3 | exon | 2408076 | 2408108 | 2408076 | ID=MS.gene26995.t1.exon1;Parent=MS.gene26995.t1 |
| chr1.3 | CDS | 2408076 | 2408108 | 2408076 | ID=cds.MS.gene26995.t1;Parent=MS.gene26995.t1 |
| chr1.3 | exon | 2408192 | 2408486 | 2408192 | ID=MS.gene26995.t1.exon2;Parent=MS.gene26995.t1 |
| chr1.3 | CDS | 2408192 | 2408486 | 2408192 | ID=cds.MS.gene26995.t1;Parent=MS.gene26995.t1 |
| chr1.3 | exon | 2408636 | 2408806 | 2408636 | ID=MS.gene26995.t1.exon3;Parent=MS.gene26995.t1 |
| chr1.3 | CDS | 2408636 | 2408806 | 2408636 | ID=cds.MS.gene26995.t1;Parent=MS.gene26995.t1 |
| chr1.3 | exon | 2408923 | 2408972 | 2408923 | ID=MS.gene26995.t1.exon4;Parent=MS.gene26995.t1 |
| chr1.3 | CDS | 2408923 | 2408972 | 2408923 | ID=cds.MS.gene26995.t1;Parent=MS.gene26995.t1 |
| chr1.3 | exon | 2409142 | 2409198 | 2409142 | ID=MS.gene26995.t1.exon5;Parent=MS.gene26995.t1 |
| chr1.3 | CDS | 2409142 | 2409198 | 2409142 | ID=cds.MS.gene26995.t1;Parent=MS.gene26995.t1 |
| chr1.3 | exon | 2409288 | 2409353 | 2409288 | ID=MS.gene26995.t1.exon6;Parent=MS.gene26995.t1 |
| chr1.3 | CDS | 2409288 | 2409353 | 2409288 | ID=cds.MS.gene26995.t1;Parent=MS.gene26995.t1 |
| chr1.3 | exon | 2409460 | 2409534 | 2409460 | ID=MS.gene26995.t1.exon7;Parent=MS.gene26995.t1 |
| chr1.3 | CDS | 2409460 | 2409534 | 2409460 | ID=cds.MS.gene26995.t1;Parent=MS.gene26995.t1 |
| chr1.3 | exon | 2409734 | 2409852 | 2409734 | ID=MS.gene26995.t1.exon8;Parent=MS.gene26995.t1 |
| chr1.3 | CDS | 2409734 | 2409852 | 2409734 | ID=cds.MS.gene26995.t1;Parent=MS.gene26995.t1 |
| chr1.3 | exon | 2409964 | 2410055 | 2409964 | ID=MS.gene26995.t1.exon9;Parent=MS.gene26995.t1 |
| chr1.3 | CDS | 2409964 | 2410055 | 2409964 | ID=cds.MS.gene26995.t1;Parent=MS.gene26995.t1 |
| chr1.3 | exon | 2410405 | 2410459 | 2410405 | ID=MS.gene26995.t1.exon10;Parent=MS.gene26995.t1 |
| chr1.3 | CDS | 2410405 | 2410459 | 2410405 | ID=cds.MS.gene26995.t1;Parent=MS.gene26995.t1 |
| chr1.3 | exon | 2410531 | 2410537 | 2410531 | ID=MS.gene26995.t1.exon11;Parent=MS.gene26995.t1 |
| chr1.3 | CDS | 2410531 | 2410537 | 2410531 | ID=cds.MS.gene26995.t1;Parent=MS.gene26995.t1 |
| Gene Sequence |
| Protein sequence |
