Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27257.t1 | KEH40184.1 | 97.6 | 328 | 8 | 0 | 2 | 329 | 32 | 359 | 5.70E-182 | 646.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27257.t1 | Q9FWS6 | 65.5 | 325 | 108 | 3 | 5 | 327 | 1 | 323 | 5.8e-119 | 428.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27257.t1 | A0A072VDT6 | 97.6 | 328 | 8 | 0 | 2 | 329 | 32 | 359 | 4.1e-182 | 646.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058120 | MS.gene27257 | 0.838497 | 2.78E-57 | -1.69E-46 |
| MS.gene058948 | MS.gene27257 | 0.853257 | 2.69E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27257.t1 | MTR_1g022485 | 97.561 | 328 | 8 | 0 | 2 | 329 | 32 | 359 | 0.0 | 670 |
| MS.gene27257.t1 | MTR_3g112160 | 71.125 | 329 | 83 | 2 | 4 | 329 | 3 | 322 | 3.84e-167 | 468 |
| MS.gene27257.t1 | MTR_3g112160 | 69.456 | 239 | 61 | 2 | 4 | 239 | 3 | 232 | 3.52e-114 | 330 |
| MS.gene27257.t1 | MTR_5g023110 | 33.514 | 185 | 116 | 4 | 138 | 320 | 141 | 320 | 4.52e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27257.t1 | AT1G75380 | 65.538 | 325 | 108 | 3 | 5 | 327 | 1 | 323 | 9.82e-160 | 449 |
| MS.gene27257.t1 | AT1G75380 | 65.538 | 325 | 108 | 3 | 5 | 327 | 1 | 323 | 9.82e-160 | 449 |
| MS.gene27257.t1 | AT1G75380 | 65.538 | 325 | 108 | 3 | 5 | 327 | 1 | 323 | 9.82e-160 | 449 |
| MS.gene27257.t1 | AT1G75380 | 65.538 | 325 | 108 | 3 | 5 | 327 | 1 | 323 | 9.82e-160 | 449 |
| MS.gene27257.t1 | AT1G19660 | 62.500 | 328 | 117 | 3 | 5 | 327 | 1 | 327 | 7.55e-153 | 432 |
| MS.gene27257.t1 | AT1G19660 | 62.500 | 328 | 117 | 3 | 5 | 327 | 1 | 327 | 7.55e-153 | 432 |
| MS.gene27257.t1 | AT1G19660 | 63.987 | 311 | 106 | 3 | 5 | 310 | 1 | 310 | 4.89e-146 | 415 |
| MS.gene27257.t1 | AT5G66050 | 37.912 | 182 | 105 | 5 | 137 | 316 | 49 | 224 | 2.84e-27 | 107 |
| MS.gene27257.t1 | AT5G66050 | 37.705 | 183 | 106 | 5 | 137 | 317 | 143 | 319 | 1.09e-26 | 108 |
| MS.gene27257.t1 | AT5G66050 | 37.705 | 183 | 106 | 5 | 137 | 317 | 143 | 319 | 1.09e-26 | 107 |
| MS.gene27257.t1 | AT5G66050 | 34.706 | 170 | 103 | 5 | 137 | 304 | 143 | 306 | 1.74e-18 | 85.1 |
Find 71 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGAATGGCTTCTCTTAA+AGG | 0.223961 | 1.1:+1664433 | MS.gene27257:CDS |
| GATGGAGATGATTGACAAAA+TGG | 0.281544 | 1.1:+1665406 | MS.gene27257:CDS |
| CGGTCGATTATTTACTGAAA+TGG | 0.286593 | 1.1:+1666064 | MS.gene27257:CDS |
| AAAGACATACAAACAATTAT+AGG | 0.305774 | 1.1:-1665032 | None:intergenic |
| GATGTGTTAGAACTGAGTTT+TGG | 0.317329 | 1.1:+1664533 | MS.gene27257:CDS |
| TCTATTCATCCTAAAGTTGC+AGG | 0.331622 | 1.1:+1664472 | MS.gene27257:CDS |
| TTCTGCACCCTTCCTATGAT+TGG | 0.348033 | 1.1:+1664496 | MS.gene27257:CDS |
| CTCGAATGATGGTGGAAGTA+TGG | 0.356382 | 1.1:+1664645 | MS.gene27257:CDS |
| GTGCAGAACCCTGCAACTTT+AGG | 0.356945 | 1.1:-1664481 | None:intergenic |
| TCAGCACAAGGTTGACCATT+TGG | 0.367572 | 1.1:-1666203 | None:intergenic |
| AAGTACTTGTTGACTTGTAT+TGG | 0.414348 | 1.1:-1665975 | None:intergenic |
| CTAACACATCTAACATTCAT+AGG | 0.419206 | 1.1:-1664520 | None:intergenic |
| TGCAACTTTAGGATGAATAG+AGG | 0.422092 | 1.1:-1664470 | None:intergenic |
| CTCCAGCATTGTGGAGGGAC+AGG | 0.429857 | 1.1:+1666638 | MS.gene27257:intron |
| GGAATGAGAGTAATTGAATC+AGG | 0.437048 | 1.1:+1666011 | MS.gene27257:CDS |
| TGCTCTTCCTCGTGTTTATG+TGG | 0.442987 | 1.1:-1664591 | None:intergenic |
| TTGAAAATGGAAGATGGGTC+TGG | 0.444298 | 1.1:+1664999 | MS.gene27257:CDS |
| AATAATCGACCGTCAAAACT+AGG | 0.444954 | 1.1:-1666053 | None:intergenic |
| GACCTCCCTGAGGATTGTTA+TGG | 0.464181 | 1.1:-1664941 | None:intergenic |
| GCGGGATGTGGTGAATAATC+AGG | 0.466253 | 1.1:-1664969 | None:intergenic |
| TGAATAGAGGGACACACAAC+TGG | 0.466754 | 1.1:-1664457 | None:intergenic |
| GAGGTGAAGAGTGGAGCAGA+TGG | 0.472687 | 1.1:+1664876 | MS.gene27257:CDS |
| ACATTCATAGGTCCAATCAT+AGG | 0.473931 | 1.1:-1664508 | None:intergenic |
| TCGTGTTTATGTGGTAAGAA+AGG | 0.481657 | 1.1:-1664582 | None:intergenic |
| AATTACTCTCATTCCATCAC+TGG | 0.485713 | 1.1:-1666003 | None:intergenic |
| TCAGACTTGTCAGAGTTACT+AGG | 0.488968 | 1.1:+1665527 | MS.gene27257:CDS |
| GATGCCAAGCGTCTTACTAC+TGG | 0.490820 | 1.1:+1665165 | MS.gene27257:CDS |
| ATGTGTCCATAACAATCCTC+AGG | 0.496470 | 1.1:+1664935 | MS.gene27257:CDS |
| TTAAATTCGCCCTCGAATGA+TGG | 0.505216 | 1.1:+1664634 | MS.gene27257:CDS |
| TTTGGTATAGGTTGGAAATG+AGG | 0.505315 | 1.1:+1665688 | MS.gene27257:intron |
| TGACATCATTGCAGGCCAAA+TGG | 0.511678 | 1.1:+1666188 | MS.gene27257:intron |
| TTCAAAACCATAGCGGGATG+TGG | 0.522034 | 1.1:-1664981 | None:intergenic |
| CATACTTCCACCATCATTCG+AGG | 0.528073 | 1.1:-1664644 | None:intergenic |
| TTCATAATCAAAATGAGGGA+TGG | 0.534500 | 1.1:+1664900 | MS.gene27257:CDS |
| ATGGTTTCATAATCAAAATG+AGG | 0.535720 | 1.1:+1664895 | MS.gene27257:CDS |
| AGTTCAAGTGTGATTGAAGC+CGG | 0.535784 | 1.1:+1664703 | MS.gene27257:CDS |
| AAGTACTTGGCGTCCAGTGA+TGG | 0.538274 | 1.1:+1665990 | MS.gene27257:CDS |
| TTATTCACCACATCCCGCTA+TGG | 0.543012 | 1.1:+1664974 | MS.gene27257:CDS |
| ATGGAGATGATTGACAAAAT+GGG | 0.546253 | 1.1:+1665407 | MS.gene27257:CDS |
| TACGTTATATGAAGTAGTGA+TGG | 0.552296 | 1.1:+1665388 | MS.gene27257:CDS |
| TCATAGGTCCAATCATAGGA+AGG | 0.553508 | 1.1:-1664504 | None:intergenic |
| GGGACAGGCTTAATCAACAT+AGG | 0.571885 | 1.1:+1666653 | MS.gene27257:CDS |
| CTATTCATCCTAAAGTTGCA+GGG | 0.578397 | 1.1:+1664473 | MS.gene27257:CDS |
| AATTCGCCCTCGAATGATGG+TGG | 0.578828 | 1.1:+1664637 | MS.gene27257:CDS |
| TGCTCAGTTGTATCTTACCA+AGG | 0.579022 | 1.1:+1665570 | MS.gene27257:CDS |
| AATACAAGTCAACAAGTACT+TGG | 0.579849 | 1.1:+1665977 | MS.gene27257:CDS |
| AGGCTTAATCAACATAGGGC+TGG | 0.580254 | 1.1:+1666658 | MS.gene27257:CDS |
| AATTCATCAGTTTCAGCACA+AGG | 0.582528 | 1.1:-1666215 | None:intergenic |
| GCTGCCAGTAGTAAGACGCT+TGG | 0.586641 | 1.1:-1665169 | None:intergenic |
| ATAATCGACCGTCAAAACTA+GGG | 0.595399 | 1.1:-1666052 | None:intergenic |
| ATGCAACTCCAGCATTGTGG+AGG | 0.595666 | 1.1:+1666632 | MS.gene27257:intron |
| TTGGAAATGAGGCAGAATGT+AGG | 0.599379 | 1.1:+1665699 | MS.gene27257:CDS |
| CTGATGCAACTCCAGCATTG+TGG | 0.599713 | 1.1:+1666629 | MS.gene27257:intron |
| GGACAGGCTTAATCAACATA+GGG | 0.600030 | 1.1:+1666654 | MS.gene27257:CDS |
| CAATATTGCAGTAAGATGCA+AGG | 0.620500 | 1.1:+1665751 | MS.gene27257:CDS |
| TGATAGCATCAGAAGGTCGA+AGG | 0.622485 | 1.1:-1665730 | None:intergenic |
| TGGTTTCATAATCAAAATGA+GGG | 0.623930 | 1.1:+1664896 | MS.gene27257:CDS |
| GAAGAGCGTTACGATGATGC+CGG | 0.630135 | 1.1:+1666272 | MS.gene27257:CDS |
| AGTTACTAGGAGAGTCGATG+AGG | 0.631695 | 1.1:+1665540 | MS.gene27257:CDS |
| GCAATATTGATAGCATCAGA+AGG | 0.632049 | 1.1:-1665737 | None:intergenic |
| TGCAACTCCAGCATTGTGGA+GGG | 0.635561 | 1.1:+1666633 | MS.gene27257:intron |
| CATAGGTCCAATCATAGGAA+GGG | 0.639201 | 1.1:-1664503 | None:intergenic |
| TCAAAACTAGGGATCTGCGT+TGG | 0.642657 | 1.1:-1666041 | None:intergenic |
| TGACTAGTTGAGGTGAAGAG+TGG | 0.642688 | 1.1:+1664867 | MS.gene27257:intron |
| GCAACTTTAGGATGAATAGA+GGG | 0.651301 | 1.1:-1664469 | None:intergenic |
| ATACTTCCACCATCATTCGA+GGG | 0.659413 | 1.1:-1664643 | None:intergenic |
| TGTGTCCATAACAATCCTCA+GGG | 0.669670 | 1.1:+1664936 | MS.gene27257:CDS |
| ATCACTACTTCATATAACGT+AGG | 0.707367 | 1.1:-1665386 | None:intergenic |
| TTTCTTACCACATAAACACG+AGG | 0.715725 | 1.1:+1664584 | MS.gene27257:CDS |
| GTCCATAACAATCCTCAGGG+AGG | 0.723950 | 1.1:+1664939 | MS.gene27257:CDS |
| TCAGGAAGATGACCTCCCTG+AGG | 0.767271 | 1.1:-1664951 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATGATTAAACACATATA+GGG | - | chr1.1:1665064-1665083 | None:intergenic | 15.0% |
| !! | TTATATGATTAAACACATAT+AGG | - | chr1.1:1665065-1665084 | None:intergenic | 15.0% |
| !!! | ATGTTTATGTCATATTTTTA+GGG | - | chr1.1:1665629-1665648 | None:intergenic | 15.0% |
| !!! | TTCTAATCCTATTTTTATTT+TGG | + | chr1.1:1665471-1665490 | MS.gene27257:intron | 15.0% |
| !!! | TTTATATGACAATTTTACAA+AGG | + | chr1.1:1666712-1666731 | MS.gene27257:intron | 15.0% |
| !! | AAAGACATACAAACAATTAT+AGG | - | chr1.1:1665035-1665054 | None:intergenic | 20.0% |
| !! | GAAAAGACCAAAATAAAAAT+AGG | - | chr1.1:1665481-1665500 | None:intergenic | 20.0% |
| !! | TGATGATATATATTTGGTAT+AGG | + | chr1.1:1665676-1665695 | MS.gene27257:intron | 20.0% |
| !!! | AAATTCCATATTTCATTTTG+TGG | + | chr1.1:1666553-1666572 | MS.gene27257:intron | 20.0% |
| !!! | ATCATATAAGTTTAGTTCTT+TGG | + | chr1.1:1665076-1665095 | MS.gene27257:intron | 20.0% |
| !!! | CATGTTTATGTCATATTTTT+AGG | - | chr1.1:1665630-1665649 | None:intergenic | 20.0% |
| !!! | TCAAGCATTTTACTATTTTA+CGG | + | chr1.1:1665940-1665959 | MS.gene27257:intron | 20.0% |
| ! | ATGGTTTCATAATCAAAATG+AGG | + | chr1.1:1664895-1664914 | MS.gene27257:CDS | 25.0% |
| ! | GATATATATTTGGTATAGGT+TGG | + | chr1.1:1665680-1665699 | MS.gene27257:intron | 25.0% |
| ! | TACGAGTGATGATATATATT+TGG | + | chr1.1:1665670-1665689 | MS.gene27257:intron | 25.0% |
| ! | TGGTTTCATAATCAAAATGA+GGG | + | chr1.1:1664896-1664915 | MS.gene27257:CDS | 25.0% |
| !! | TCTTTACCATTGTAATTTTC+TGG | + | chr1.1:1665121-1665140 | MS.gene27257:intron | 25.0% |
| !! | TGAAATAACTTGTACTCATA+AGG | + | chr1.1:1666100-1666119 | MS.gene27257:intron | 25.0% |
| !!! | GCTTAATTTTATTTTGTTGC+AGG | + | chr1.1:1666748-1666767 | MS.gene27257:intron | 25.0% |
| !!! | TAGTATTTTGTTTACTAGCA+TGG | + | chr1.1:1664790-1664809 | MS.gene27257:intron | 25.0% |
| !!! | TATGTCATATTTTTAGGGTT+GGG | - | chr1.1:1665624-1665643 | None:intergenic | 25.0% |
| !!! | TATTTTCTTTTGGTGTTTGT+AGG | + | chr1.1:1664408-1664427 | MS.gene27257:intron | 25.0% |
| !!! | TTATGTCATATTTTTAGGGT+TGG | - | chr1.1:1665625-1665644 | None:intergenic | 25.0% |
| !!! | TTTGATGTTTTTGCTCTTAT+TGG | + | chr1.1:1666414-1666433 | MS.gene27257:intron | 25.0% |
| AATACAAGTCAACAAGTACT+TGG | + | chr1.1:1665977-1665996 | MS.gene27257:CDS | 30.0% | |
| AATCAGAAGACTGTAATTAC+CGG | - | chr1.1:1666294-1666313 | None:intergenic | 30.0% | |
| ATCACTACTTCATATAACGT+AGG | - | chr1.1:1665389-1665408 | None:intergenic | 30.0% | |
| ATGGAGATGATTGACAAAAT+GGG | + | chr1.1:1665407-1665426 | MS.gene27257:CDS | 30.0% | |
| CTAACACATCTAACATTCAT+AGG | - | chr1.1:1664523-1664542 | None:intergenic | 30.0% | |
| CTAGTCCACAAAATGAAATA+TGG | - | chr1.1:1666561-1666580 | None:intergenic | 30.0% | |
| CTGGTAAAAACATGAAAAGA+AGG | + | chr1.1:1666677-1666696 | MS.gene27257:CDS | 30.0% | |
| GAAAGAAACAGAATCATACT+TGG | - | chr1.1:1665436-1665455 | None:intergenic | 30.0% | |
| GACATTCCAGAAAATTACAA+TGG | - | chr1.1:1665130-1665149 | None:intergenic | 30.0% | |
| TACGTTATATGAAGTAGTGA+TGG | + | chr1.1:1665388-1665407 | MS.gene27257:CDS | 30.0% | |
| TTATATATCTCAGAAGAACG+AGG | - | chr1.1:1665277-1665296 | None:intergenic | 30.0% | |
| TTCATAATCAAAATGAGGGA+TGG | + | chr1.1:1664900-1664919 | MS.gene27257:CDS | 30.0% | |
| ! | ATGTGTTAGAACTGAGTTTT+GGG | + | chr1.1:1664534-1664553 | MS.gene27257:CDS | 30.0% |
| ! | TGATGATGTATTCAGATGTA+TGG | - | chr1.1:1665791-1665810 | None:intergenic | 30.0% |
| ! | TTCCATTTTCAAAACCATAG+CGG | - | chr1.1:1664991-1665010 | None:intergenic | 30.0% |
| !! | AAGTACTTGTTGACTTGTAT+TGG | - | chr1.1:1665978-1665997 | None:intergenic | 30.0% |
| !!! | ATGGTTTTGAAAATGGAAGA+TGG | + | chr1.1:1664993-1665012 | MS.gene27257:CDS | 30.0% |
| !!! | ATTTTTTTTCCCAGCAATAC+TGG | + | chr1.1:1665880-1665899 | MS.gene27257:intron | 30.0% |
| !!! | TGGTTTTGAAAATGGAAGAT+GGG | + | chr1.1:1664994-1665013 | MS.gene27257:CDS | 30.0% |
| AAAAATCAAGCCGTCATGTA+TGG | - | chr1.1:1665866-1665885 | None:intergenic | 35.0% | |
| AAGTCTTGACAAACATGTGA+CGG | - | chr1.1:1665249-1665268 | None:intergenic | 35.0% | |
| AATAATCGACCGTCAAAACT+AGG | - | chr1.1:1666056-1666075 | None:intergenic | 35.0% | |
| AATTACTCTCATTCCATCAC+TGG | - | chr1.1:1666006-1666025 | None:intergenic | 35.0% | |
| AATTCATCAGTTTCAGCACA+AGG | - | chr1.1:1666218-1666237 | None:intergenic | 35.0% | |
| ACATAGAACCAGAATCTTTC+TGG | - | chr1.1:1665318-1665337 | None:intergenic | 35.0% | |
| ACATTCATAGGTCCAATCAT+AGG | - | chr1.1:1664511-1664530 | None:intergenic | 35.0% | |
| ATAATCGACCGTCAAAACTA+GGG | - | chr1.1:1666055-1666074 | None:intergenic | 35.0% | |
| ATCATTGTTGCCATACATGA+CGG | + | chr1.1:1665853-1665872 | MS.gene27257:intron | 35.0% | |
| CAATATTGCAGTAAGATGCA+AGG | + | chr1.1:1665751-1665770 | MS.gene27257:CDS | 35.0% | |
| CATGTAGTAGCTAAACATAC+CGG | - | chr1.1:1664725-1664744 | None:intergenic | 35.0% | |
| CGGTCGATTATTTACTGAAA+TGG | + | chr1.1:1666064-1666083 | MS.gene27257:CDS | 35.0% | |
| CTATTCATCCTAAAGTTGCA+GGG | + | chr1.1:1664473-1664492 | MS.gene27257:CDS | 35.0% | |
| GATGGAGATGATTGACAAAA+TGG | + | chr1.1:1665406-1665425 | MS.gene27257:CDS | 35.0% | |
| GGAATGAGAGTAATTGAATC+AGG | + | chr1.1:1666011-1666030 | MS.gene27257:CDS | 35.0% | |
| TCGTGTTTATGTGGTAAGAA+AGG | - | chr1.1:1664585-1664604 | None:intergenic | 35.0% | |
| TCTATTCATCCTAAAGTTGC+AGG | + | chr1.1:1664472-1664491 | MS.gene27257:CDS | 35.0% | |
| TGTTAACTTTCCTCTTGGAT+GGG | + | chr1.1:1666452-1666471 | MS.gene27257:intron | 35.0% | |
| TGTTTGATCCAGAAAGATTC+TGG | + | chr1.1:1665307-1665326 | MS.gene27257:intron | 35.0% | |
| TTGAGAATGGCTTCTCTTAA+AGG | + | chr1.1:1664433-1664452 | MS.gene27257:CDS | 35.0% | |
| TTGTTAACTTTCCTCTTGGA+TGG | + | chr1.1:1666451-1666470 | MS.gene27257:intron | 35.0% | |
| TTTCTTACCACATAAACACG+AGG | + | chr1.1:1664584-1664603 | MS.gene27257:CDS | 35.0% | |
| TTTGTTCGTACGCTAGTTAT+AGG | + | chr1.1:1666386-1666405 | MS.gene27257:intron | 35.0% | |
| ! | ATTTTCCATCCAGTATTGCT+GGG | - | chr1.1:1665892-1665911 | None:intergenic | 35.0% |
| ! | GATGTGTTAGAACTGAGTTT+TGG | + | chr1.1:1664533-1664552 | MS.gene27257:CDS | 35.0% |
| ! | GCAATATTGATAGCATCAGA+AGG | - | chr1.1:1665740-1665759 | None:intergenic | 35.0% |
| ! | TACTATTTTACGGATGACAC+AGG | + | chr1.1:1665950-1665969 | MS.gene27257:intron | 35.0% |
| ! | TCCATTTTCAAAACCATAGC+GGG | - | chr1.1:1664990-1665009 | None:intergenic | 35.0% |
| ! | TGATGTCACTTGTAGTTAAG+AGG | - | chr1.1:1666176-1666195 | None:intergenic | 35.0% |
| ! | TGGAATGTCTTTATTTGCAG+TGG | + | chr1.1:1665141-1665160 | MS.gene27257:intron | 35.0% |
| ! | TGTGTTAGAACTGAGTTTTG+GGG | + | chr1.1:1664535-1664554 | MS.gene27257:CDS | 35.0% |
| ! | TTTGGTATAGGTTGGAAATG+AGG | + | chr1.1:1665688-1665707 | MS.gene27257:intron | 35.0% |
| !! | CAACTTGTTAACTTTCCTCT+TGG | + | chr1.1:1666447-1666466 | MS.gene27257:intron | 35.0% |
| !! | GCAACTTTAGGATGAATAGA+GGG | - | chr1.1:1664472-1664491 | None:intergenic | 35.0% |
| !! | GTGATTTTGTTGACTAGTTG+AGG | + | chr1.1:1664857-1664876 | MS.gene27257:intron | 35.0% |
| !! | TGCAACTTTAGGATGAATAG+AGG | - | chr1.1:1664473-1664492 | None:intergenic | 35.0% |
| !!! | GTGTTTGTAGGTTTTGAGAA+TGG | + | chr1.1:1664420-1664439 | MS.gene27257:intron | 35.0% |
| !!! | TCATATTTTTAGGGTTGGGA+GGG | - | chr1.1:1665620-1665639 | None:intergenic | 35.0% |
| ACTACAAGTGACATCATTGC+AGG | + | chr1.1:1666180-1666199 | MS.gene27257:intron | 40.0% | |
| AGTTCAAGTGTGATTGAAGC+CGG | + | chr1.1:1664703-1664722 | MS.gene27257:CDS | 40.0% | |
| AGTTGCATCAGAAACATGAG+AGG | - | chr1.1:1666620-1666639 | None:intergenic | 40.0% | |
| ATAACAAGACCCTCTCATGT+TGG | - | chr1.1:1666497-1666516 | None:intergenic | 40.0% | |
| ATACTTCCACCATCATTCGA+GGG | - | chr1.1:1664646-1664665 | None:intergenic | 40.0% | |
| ATGTGTCCATAACAATCCTC+AGG | + | chr1.1:1664935-1664954 | MS.gene27257:CDS | 40.0% | |
| ATGTTACTCTCCAACATGAG+AGG | + | chr1.1:1666484-1666503 | MS.gene27257:intron | 40.0% | |
| CACTATTTGGTTGCTGTATC+AGG | + | chr1.1:1665358-1665377 | MS.gene27257:intron | 40.0% | |
| CATAGGTCCAATCATAGGAA+GGG | - | chr1.1:1664506-1664525 | None:intergenic | 40.0% | |
| GGACAGGCTTAATCAACATA+GGG | + | chr1.1:1666654-1666673 | MS.gene27257:CDS | 40.0% | |
| GTTAACTTTCCTCTTGGATG+GGG | + | chr1.1:1666453-1666472 | MS.gene27257:intron | 40.0% | |
| TAGCGTACGAACAAAATCAC+TGG | - | chr1.1:1666381-1666400 | None:intergenic | 40.0% | |
| TCAGACTTGTCAGAGTTACT+AGG | + | chr1.1:1665527-1665546 | MS.gene27257:CDS | 40.0% | |
| TCATAGGTCCAATCATAGGA+AGG | - | chr1.1:1664507-1664526 | None:intergenic | 40.0% | |
| TGCTCAGTTGTATCTTACCA+AGG | + | chr1.1:1665570-1665589 | MS.gene27257:CDS | 40.0% | |
| TGTGTCCATAACAATCCTCA+GGG | + | chr1.1:1664936-1664955 | MS.gene27257:CDS | 40.0% | |
| TGTTACTCTCCAACATGAGA+GGG | + | chr1.1:1666485-1666504 | MS.gene27257:intron | 40.0% | |
| TTAAATTCGCCCTCGAATGA+TGG | + | chr1.1:1664634-1664653 | MS.gene27257:CDS | 40.0% | |
| TTGAAAATGGAAGATGGGTC+TGG | + | chr1.1:1664999-1665018 | MS.gene27257:CDS | 40.0% | |
| TTGGAAATGAGGCAGAATGT+AGG | + | chr1.1:1665699-1665718 | MS.gene27257:CDS | 40.0% | |
| ! | GATTTTCCATCCAGTATTGC+TGG | - | chr1.1:1665893-1665912 | None:intergenic | 40.0% |
| ! | TTTTTCCCAGCAATACTGGA+TGG | + | chr1.1:1665884-1665903 | MS.gene27257:intron | 40.0% |
| !!! | GTCATATTTTTAGGGTTGGG+AGG | - | chr1.1:1665621-1665640 | None:intergenic | 40.0% |
| !!! | TCCCGCTATGGTTTTGAAAA+TGG | + | chr1.1:1664986-1665005 | MS.gene27257:CDS | 40.0% |
| AGGCGTATTTCACGAAGCAA+AGG | - | chr1.1:1666156-1666175 | None:intergenic | 45.0% | |
| AGGCTTAATCAACATAGGGC+TGG | + | chr1.1:1666658-1666677 | MS.gene27257:CDS | 45.0% | |
| AGTTACTAGGAGAGTCGATG+AGG | + | chr1.1:1665540-1665559 | MS.gene27257:CDS | 45.0% | |
| CATACTTCCACCATCATTCG+AGG | - | chr1.1:1664647-1664666 | None:intergenic | 45.0% | |
| CCAAATAGTGAGAATCAGCG+TGG | - | chr1.1:1665348-1665367 | None:intergenic | 45.0% | |
| GGAGTACAGAGTAAATGCCT+TGG | - | chr1.1:1665590-1665609 | None:intergenic | 45.0% | |
| GGGACAGGCTTAATCAACAT+AGG | + | chr1.1:1666653-1666672 | MS.gene27257:CDS | 45.0% | |
| TCAAAACTAGGGATCTGCGT+TGG | - | chr1.1:1666044-1666063 | None:intergenic | 45.0% | |
| TCAGCACAAGGTTGACCATT+TGG | - | chr1.1:1666206-1666225 | None:intergenic | 45.0% | |
| TCATCACTCGTAAGCACTAG+AGG | - | chr1.1:1665662-1665681 | None:intergenic | 45.0% | |
| TGAATAGAGGGACACACAAC+TGG | - | chr1.1:1664460-1664479 | None:intergenic | 45.0% | |
| TGACATCATTGCAGGCCAAA+TGG | + | chr1.1:1666188-1666207 | MS.gene27257:intron | 45.0% | |
| TGATAGCATCAGAAGGTCGA+AGG | - | chr1.1:1665733-1665752 | None:intergenic | 45.0% | |
| TGCTCTTCCTCGTGTTTATG+TGG | - | chr1.1:1664594-1664613 | None:intergenic | 45.0% | |
| TTATTCACCACATCCCGCTA+TGG | + | chr1.1:1664974-1664993 | MS.gene27257:CDS | 45.0% | |
| TTCTGCACCCTTCCTATGAT+TGG | + | chr1.1:1664496-1664515 | MS.gene27257:CDS | 45.0% | |
| TTTACTAGCATGGTTGCACG+AGG | + | chr1.1:1664800-1664819 | MS.gene27257:intron | 45.0% | |
| TTTGGTTGCTGTATCAGGCT+AGG | + | chr1.1:1665363-1665382 | MS.gene27257:intron | 45.0% | |
| ! | TGACTAGTTGAGGTGAAGAG+TGG | + | chr1.1:1664867-1664886 | MS.gene27257:intron | 45.0% |
| ! | TTCAAAACCATAGCGGGATG+TGG | - | chr1.1:1664984-1665003 | None:intergenic | 45.0% |
| !! | CCACGCTGATTCTCACTATT+TGG | + | chr1.1:1665345-1665364 | MS.gene27257:intron | 45.0% |
| !! | CTCGAATGATGGTGGAAGTA+TGG | + | chr1.1:1664645-1664664 | MS.gene27257:CDS | 45.0% |
| !!! | AACTGAGTTTTGGGGACTCA+AGG | + | chr1.1:1664543-1664562 | MS.gene27257:CDS | 45.0% |
| !!! | ACGCAGATCCCTAGTTTTGA+CGG | + | chr1.1:1666044-1666063 | MS.gene27257:CDS | 45.0% |
| !!! | TATTTTTAGGGTTGGGAGGG+AGG | - | chr1.1:1665617-1665636 | None:intergenic | 45.0% |
| AAGTACTTGGCGTCCAGTGA+TGG | + | chr1.1:1665990-1666009 | MS.gene27257:CDS | 50.0% | |
| AAGTCTGACCTGCAGAAGCA+CGG | - | chr1.1:1665515-1665534 | None:intergenic | 50.0% | |
| AATTCGCCCTCGAATGATGG+TGG | + | chr1.1:1664637-1664656 | MS.gene27257:CDS | 50.0% | |
| ATGCAACTCCAGCATTGTGG+AGG | + | chr1.1:1666632-1666651 | MS.gene27257:intron | 50.0% | |
| ATGTCATTCCGTGCTTCTGC+AGG | + | chr1.1:1665504-1665523 | MS.gene27257:intron | 50.0% | |
| CATTGCATTCTCCTACGGCT+TGG | + | chr1.1:1665819-1665838 | MS.gene27257:intron | 50.0% | |
| CTGATGCAACTCCAGCATTG+TGG | + | chr1.1:1666629-1666648 | MS.gene27257:intron | 50.0% | |
| GACCTCCCTGAGGATTGTTA+TGG | - | chr1.1:1664944-1664963 | None:intergenic | 50.0% | |
| GATGCCAAGCGTCTTACTAC+TGG | + | chr1.1:1665165-1665184 | MS.gene27257:CDS | 50.0% | |
| GCGCACATTGCATTCTCCTA+CGG | + | chr1.1:1665814-1665833 | MS.gene27257:intron | 50.0% | |
| GCGGGATGTGGTGAATAATC+AGG | - | chr1.1:1664972-1664991 | None:intergenic | 50.0% | |
| GTCCATAACAATCCTCAGGG+AGG | + | chr1.1:1664939-1664958 | MS.gene27257:CDS | 50.0% | |
| GTGCAGAACCCTGCAACTTT+AGG | - | chr1.1:1664484-1664503 | None:intergenic | 50.0% | |
| GTTGCACGAGGTTCGTCTTT+AGG | + | chr1.1:1664812-1664831 | MS.gene27257:intron | 50.0% | |
| TAACTGTCAAGCCAAGCCGT+AGG | - | chr1.1:1665833-1665852 | None:intergenic | 50.0% | |
| TGACAGAAACCCCATCCAAG+AGG | - | chr1.1:1666465-1666484 | None:intergenic | 50.0% | |
| TGCAACTCCAGCATTGTGGA+GGG | + | chr1.1:1666633-1666652 | MS.gene27257:intron | 50.0% | |
| !! | GAAGAGCGTTACGATGATGC+CGG | + | chr1.1:1666272-1666291 | MS.gene27257:CDS | 50.0% |
| GAGGTGAAGAGTGGAGCAGA+TGG | + | chr1.1:1664876-1664895 | MS.gene27257:CDS | 55.0% | |
| GCTGCCAGTAGTAAGACGCT+TGG | - | chr1.1:1665172-1665191 | None:intergenic | 55.0% | |
| TAGGGTTGGGAGGGAGGATA+AGG | - | chr1.1:1665611-1665630 | None:intergenic | 55.0% | |
| TCAGGAAGATGACCTCCCTG+AGG | - | chr1.1:1664954-1664973 | None:intergenic | 55.0% | |
| AGCCTGTCCCTCCACAATGC+TGG | - | chr1.1:1666643-1666662 | None:intergenic | 60.0% | |
| CTCCAGCATTGTGGAGGGAC+AGG | + | chr1.1:1666638-1666657 | MS.gene27257:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 1664403 | 1666776 | 1664403 | ID=MS.gene27257 |
| chr1.1 | mRNA | 1664403 | 1666776 | 1664403 | ID=MS.gene27257.t1;Parent=MS.gene27257 |
| chr1.1 | exon | 1664403 | 1664405 | 1664403 | ID=MS.gene27257.t1.exon1;Parent=MS.gene27257.t1 |
| chr1.1 | CDS | 1664403 | 1664405 | 1664403 | ID=cds.MS.gene27257.t1;Parent=MS.gene27257.t1 |
| chr1.1 | exon | 1664430 | 1664724 | 1664430 | ID=MS.gene27257.t1.exon2;Parent=MS.gene27257.t1 |
| chr1.1 | CDS | 1664430 | 1664724 | 1664430 | ID=cds.MS.gene27257.t1;Parent=MS.gene27257.t1 |
| chr1.1 | exon | 1664874 | 1665044 | 1664874 | ID=MS.gene27257.t1.exon3;Parent=MS.gene27257.t1 |
| chr1.1 | CDS | 1664874 | 1665044 | 1664874 | ID=cds.MS.gene27257.t1;Parent=MS.gene27257.t1 |
| chr1.1 | exon | 1665161 | 1665210 | 1665161 | ID=MS.gene27257.t1.exon4;Parent=MS.gene27257.t1 |
| chr1.1 | CDS | 1665161 | 1665210 | 1665161 | ID=cds.MS.gene27257.t1;Parent=MS.gene27257.t1 |
| chr1.1 | exon | 1665380 | 1665436 | 1665380 | ID=MS.gene27257.t1.exon5;Parent=MS.gene27257.t1 |
| chr1.1 | CDS | 1665380 | 1665436 | 1665380 | ID=cds.MS.gene27257.t1;Parent=MS.gene27257.t1 |
| chr1.1 | exon | 1665526 | 1665591 | 1665526 | ID=MS.gene27257.t1.exon6;Parent=MS.gene27257.t1 |
| chr1.1 | CDS | 1665526 | 1665591 | 1665526 | ID=cds.MS.gene27257.t1;Parent=MS.gene27257.t1 |
| chr1.1 | exon | 1665698 | 1665772 | 1665698 | ID=MS.gene27257.t1.exon7;Parent=MS.gene27257.t1 |
| chr1.1 | CDS | 1665698 | 1665772 | 1665698 | ID=cds.MS.gene27257.t1;Parent=MS.gene27257.t1 |
| chr1.1 | exon | 1665972 | 1666090 | 1665972 | ID=MS.gene27257.t1.exon8;Parent=MS.gene27257.t1 |
| chr1.1 | CDS | 1665972 | 1666090 | 1665972 | ID=cds.MS.gene27257.t1;Parent=MS.gene27257.t1 |
| chr1.1 | exon | 1666202 | 1666293 | 1666202 | ID=MS.gene27257.t1.exon9;Parent=MS.gene27257.t1 |
| chr1.1 | CDS | 1666202 | 1666293 | 1666202 | ID=cds.MS.gene27257.t1;Parent=MS.gene27257.t1 |
| chr1.1 | exon | 1666644 | 1666698 | 1666644 | ID=MS.gene27257.t1.exon10;Parent=MS.gene27257.t1 |
| chr1.1 | CDS | 1666644 | 1666698 | 1666644 | ID=cds.MS.gene27257.t1;Parent=MS.gene27257.t1 |
| chr1.1 | exon | 1666770 | 1666776 | 1666770 | ID=MS.gene27257.t1.exon11;Parent=MS.gene27257.t1 |
| chr1.1 | CDS | 1666770 | 1666776 | 1666770 | ID=cds.MS.gene27257.t1;Parent=MS.gene27257.t1 |
| Gene Sequence |
| Protein sequence |
