Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27429.t1 | RHN52392.1 | 91.2 | 91 | 8 | 0 | 2 | 92 | 179 | 269 | 1.50E-38 | 169.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27429.t1 | A0A2P1GIY9 | 54.9 | 91 | 41 | 0 | 2 | 92 | 180 | 270 | 2.7e-23 | 109.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27429.t1 | A0A396HGB9 | 91.2 | 91 | 8 | 0 | 2 | 92 | 179 | 269 | 1.1e-38 | 169.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051360 | MS.gene27429 | 0.807256 | 5.52E-50 | -1.69E-46 |
MS.gene052134 | MS.gene27429 | 0.813638 | 2.31E-51 | -1.69E-46 |
MS.gene055666 | MS.gene27429 | 0.807825 | 4.18E-50 | -1.69E-46 |
MS.gene061154 | MS.gene27429 | 0.810086 | 1.37E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27429.t1 | MTR_6g072710 | 96.203 | 79 | 3 | 0 | 14 | 92 | 1 | 79 | 4.19e-51 | 159 |
MS.gene27429.t1 | MTR_4g072320 | 69.512 | 82 | 25 | 0 | 11 | 92 | 181 | 262 | 1.57e-37 | 130 |
MS.gene27429.t1 | MTR_4g072360 | 67.073 | 82 | 27 | 0 | 11 | 92 | 187 | 268 | 6.25e-35 | 123 |
MS.gene27429.t1 | MTR_4g072350 | 62.921 | 89 | 33 | 0 | 4 | 92 | 180 | 268 | 7.10e-35 | 123 |
MS.gene27429.t1 | MTR_6g073110 | 57.955 | 88 | 37 | 0 | 5 | 92 | 181 | 268 | 8.46e-30 | 110 |
MS.gene27429.t1 | MTR_0374s0050 | 48.864 | 88 | 45 | 0 | 11 | 98 | 190 | 277 | 1.04e-23 | 94.4 |
MS.gene27429.t1 | MTR_4g036845 | 47.368 | 95 | 50 | 0 | 6 | 100 | 175 | 269 | 4.05e-21 | 87.0 |
MS.gene27429.t1 | MTR_8g070115 | 48.148 | 81 | 42 | 0 | 11 | 91 | 180 | 260 | 7.59e-21 | 86.7 |
MS.gene27429.t1 | MTR_6g072650 | 50.000 | 82 | 19 | 1 | 11 | 92 | 25 | 84 | 1.11e-20 | 82.4 |
MS.gene27429.t1 | MTR_3g083130 | 51.190 | 84 | 36 | 2 | 11 | 92 | 190 | 270 | 5.46e-20 | 84.3 |
MS.gene27429.t1 | MTR_8g070095 | 48.780 | 82 | 40 | 1 | 11 | 92 | 186 | 265 | 1.59e-19 | 82.8 |
MS.gene27429.t1 | MTR_5g097900 | 48.810 | 84 | 38 | 2 | 11 | 92 | 188 | 268 | 3.21e-19 | 82.0 |
MS.gene27429.t1 | MTR_5g097910 | 48.810 | 84 | 38 | 2 | 11 | 92 | 188 | 268 | 3.25e-19 | 82.0 |
MS.gene27429.t1 | MTR_5g097940 | 48.810 | 84 | 38 | 2 | 11 | 92 | 188 | 268 | 3.25e-19 | 82.0 |
MS.gene27429.t1 | MTR_4g021350 | 46.914 | 81 | 41 | 1 | 11 | 91 | 180 | 258 | 5.58e-18 | 78.6 |
MS.gene27429.t1 | MTR_4g021350 | 46.914 | 81 | 41 | 1 | 11 | 91 | 180 | 258 | 6.74e-18 | 78.6 |
MS.gene27429.t1 | MTR_4g021450 | 46.250 | 80 | 39 | 1 | 11 | 90 | 55 | 130 | 2.72e-17 | 74.7 |
MS.gene27429.t1 | MTR_4g021450 | 46.250 | 80 | 39 | 1 | 11 | 90 | 98 | 173 | 7.74e-17 | 74.3 |
MS.gene27429.t1 | MTR_4g021450 | 46.250 | 80 | 39 | 1 | 11 | 90 | 174 | 249 | 2.66e-16 | 73.9 |
MS.gene27429.t1 | MTR_4g021410 | 43.750 | 80 | 41 | 1 | 11 | 90 | 98 | 173 | 2.56e-15 | 70.5 |
MS.gene27429.t1 | MTR_4g021410 | 43.750 | 80 | 41 | 1 | 11 | 90 | 137 | 212 | 4.75e-15 | 70.1 |
MS.gene27429.t1 | MTR_4g021410 | 43.750 | 80 | 41 | 1 | 11 | 90 | 174 | 249 | 8.24e-15 | 70.1 |
MS.gene27429.t1 | MTR_7g063580 | 41.975 | 81 | 46 | 1 | 11 | 91 | 220 | 299 | 1.27e-14 | 69.7 |
MS.gene27429.t1 | MTR_7g070500 | 29.167 | 120 | 69 | 2 | 4 | 123 | 180 | 283 | 6.69e-13 | 64.7 |
MS.gene27429.t1 | MTR_7g070500 | 29.167 | 120 | 69 | 2 | 4 | 123 | 180 | 283 | 6.90e-13 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27429.t1 | AT1G59950 | 53.659 | 82 | 38 | 0 | 11 | 92 | 185 | 266 | 9.04e-25 | 97.1 |
MS.gene27429.t1 | AT1G59960 | 50.000 | 82 | 41 | 0 | 11 | 92 | 191 | 272 | 3.75e-22 | 90.1 |
MS.gene27429.t1 | AT2G37790 | 50.000 | 82 | 41 | 0 | 11 | 92 | 180 | 261 | 5.53e-22 | 89.7 |
MS.gene27429.t1 | AT2G37770 | 51.852 | 81 | 39 | 0 | 11 | 91 | 180 | 260 | 6.15e-22 | 89.4 |
MS.gene27429.t1 | AT5G62420 | 51.250 | 80 | 39 | 0 | 11 | 90 | 181 | 260 | 9.39e-21 | 86.3 |
MS.gene27429.t1 | AT3G53880 | 49.383 | 81 | 41 | 0 | 11 | 91 | 180 | 260 | 1.50e-20 | 85.9 |
MS.gene27429.t1 | AT3G53880 | 49.383 | 81 | 41 | 0 | 11 | 91 | 180 | 260 | 1.72e-20 | 85.5 |
MS.gene27429.t1 | AT2G37760 | 44.706 | 85 | 47 | 0 | 4 | 88 | 123 | 207 | 2.16e-17 | 76.6 |
MS.gene27429.t1 | AT2G37760 | 44.706 | 85 | 47 | 0 | 4 | 88 | 123 | 207 | 2.16e-17 | 76.6 |
MS.gene27429.t1 | AT2G37760 | 44.706 | 85 | 47 | 0 | 4 | 88 | 169 | 253 | 3.24e-17 | 76.3 |
MS.gene27429.t1 | AT2G37760 | 44.706 | 85 | 47 | 0 | 4 | 88 | 169 | 253 | 3.34e-17 | 76.3 |
MS.gene27429.t1 | AT2G37760 | 44.706 | 85 | 47 | 0 | 4 | 88 | 169 | 253 | 3.34e-17 | 76.3 |
MS.gene27429.t1 | AT2G37760 | 44.706 | 85 | 47 | 0 | 4 | 88 | 169 | 253 | 4.59e-17 | 76.3 |
MS.gene27429.t1 | AT2G37760 | 44.706 | 85 | 47 | 0 | 4 | 88 | 169 | 253 | 4.59e-17 | 76.3 |
MS.gene27429.t1 | AT5G01670 | 34.831 | 89 | 55 | 1 | 4 | 92 | 208 | 293 | 8.12e-14 | 67.4 |
MS.gene27429.t1 | AT5G01670 | 34.831 | 89 | 55 | 1 | 4 | 92 | 181 | 266 | 9.71e-14 | 67.0 |
Find 29 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATTGCACTTGATCCTATT+TGG | 0.208388 | 6.2:+74576037 | None:intergenic |
ATACCTCAGTCTTTGATTCT+TGG | 0.213567 | 6.2:+74575292 | None:intergenic |
GTCAGCACTTGGAGCTTATA+AGG | 0.296501 | 6.2:-74576324 | MS.gene27429:CDS |
TATAAGGTAACTTGGGGTTC+AGG | 0.370516 | 6.2:-74576308 | MS.gene27429:CDS |
CTCAGATGGGTGTACCAAAT+AGG | 0.401163 | 6.2:-74576051 | MS.gene27429:CDS |
TGGTACTTAGAAGTTTCAAA+TGG | 0.429205 | 6.2:-74575379 | MS.gene27429:CDS |
TTTGATTCTTGGTTCGAACT+TGG | 0.434680 | 6.2:+74575303 | None:intergenic |
GTTAGTGCTTGGTCAGCACT+TGG | 0.454136 | 6.2:-74576335 | MS.gene27429:CDS |
TGGAGCTTATAAGGTAACTT+GGG | 0.457563 | 6.2:-74576315 | MS.gene27429:CDS |
TTGGAGCTTATAAGGTAACT+TGG | 0.463150 | 6.2:-74576316 | MS.gene27429:CDS |
GGTACTTAGAAGTTTCAAAT+GGG | 0.463903 | 6.2:-74575378 | MS.gene27429:CDS |
CAAGACATAGCAGCTGCAAA+AGG | 0.471565 | 6.2:-74576260 | MS.gene27429:CDS |
AGTTTCCCTTGCTGCCAAGA+GGG | 0.514018 | 6.2:+74576389 | None:intergenic |
AAGGAATTCATGTTAGTGCT+TGG | 0.521655 | 6.2:-74576346 | MS.gene27429:CDS |
TTGGGGTTCAGGCGCTGTCG+TGG | 0.539309 | 6.2:-74576297 | MS.gene27429:CDS |
AAGACATAGCAGCTGCAAAA+GGG | 0.559376 | 6.2:-74576259 | MS.gene27429:CDS |
CAGTTTCCCTTGCTGCCAAG+AGG | 0.561811 | 6.2:+74576388 | None:intergenic |
AGGTGGAGATGAATCCCTCT+TGG | 0.567194 | 6.2:-74576403 | MS.gene27429:CDS |
ATGAATCCCTCTTGGCAGCA+AGG | 0.572854 | 6.2:-74576395 | MS.gene27429:CDS |
AAAAGGGAAGACTACAGCTC+AGG | 0.578206 | 6.2:-74576243 | MS.gene27429:intron |
TGAATCCCTCTTGGCAGCAA+GGG | 0.580141 | 6.2:-74576394 | MS.gene27429:CDS |
CTTGGCAGCAAGGGAAACTG+AGG | 0.610842 | 6.2:-74576385 | MS.gene27429:CDS |
GTACTTAGAAGTTTCAAATG+GGG | 0.620462 | 6.2:-74575377 | MS.gene27429:CDS |
GGAGCTTATAAGGTAACTTG+GGG | 0.622163 | 6.2:-74576314 | MS.gene27429:CDS |
CCAAATAGGATCAAGTGCAA+TGG | 0.633088 | 6.2:-74576037 | MS.gene27429:CDS |
TTGGCAGCAAGGGAAACTGA+GGG | 0.658547 | 6.2:-74576384 | MS.gene27429:CDS |
TAGCTACACTTCTGTCACGC+AGG | 0.666285 | 6.2:+74575347 | None:intergenic |
CTACACTTCTGTCACGCAGG+AGG | 0.676997 | 6.2:+74575350 | None:intergenic |
GAACCAAGAATCAAAGACTG+AGG | 0.699121 | 6.2:-74575295 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGATTTTTTTTTAGAAATT+GGG | - | chr6.2:74575950-74575969 | MS.gene27429:intron | 10.0% |
!!! | TAAGATTTTTTTTTAGAAAT+TGG | - | chr6.2:74575949-74575968 | MS.gene27429:intron | 10.0% |
!! | TATATTAATTCATGTTATGA+TGG | - | chr6.2:74575628-74575647 | MS.gene27429:intron | 15.0% |
!!! | AATTAAGTTATTTCTCTTGA+AGG | - | chr6.2:74575905-74575924 | MS.gene27429:intron | 20.0% |
!!! | ATTAAGTTATTTCTCTTGAA+GGG | - | chr6.2:74575906-74575925 | MS.gene27429:intron | 20.0% |
!!! | GTTAACTTCAATTCTTTTTA+AGG | - | chr6.2:74575308-74575327 | MS.gene27429:CDS | 20.0% |
! | TCAAGCAATTTGAATTGAAT+AGG | + | chr6.2:74576225-74576244 | None:intergenic | 25.0% |
! | TTAAAATGGTTACGAGATAA+TGG | - | chr6.2:74575877-74575896 | MS.gene27429:intron | 25.0% |
!!! | AACTTCAATTCTTTTTAAGG+TGG | - | chr6.2:74575311-74575330 | MS.gene27429:CDS | 25.0% |
!!! | TTTGGAATATTTTAGAAGCT+TGG | + | chr6.2:74575996-74576015 | None:intergenic | 25.0% |
AATAGGAAACATCGAATTTG+GGG | + | chr6.2:74576208-74576227 | None:intergenic | 30.0% | |
ATTTCTCTTGAAGGGTAATT+TGG | - | chr6.2:74575914-74575933 | MS.gene27429:intron | 30.0% | |
GAATAGGAAACATCGAATTT+GGG | + | chr6.2:74576209-74576228 | None:intergenic | 30.0% | |
GGTACTTAGAAGTTTCAAAT+GGG | - | chr6.2:74576353-74576372 | MS.gene27429:CDS | 30.0% | |
GTACTTAGAAGTTTCAAATG+GGG | - | chr6.2:74576354-74576373 | MS.gene27429:CDS | 30.0% | |
TGAATAGGAAACATCGAATT+TGG | + | chr6.2:74576210-74576229 | None:intergenic | 30.0% | |
TGGTACTTAGAAGTTTCAAA+TGG | - | chr6.2:74576352-74576371 | MS.gene27429:CDS | 30.0% | |
! | AATGGCAAAAAGCTTTAACA+AGG | - | chr6.2:74575712-74575731 | MS.gene27429:intron | 30.0% |
! | CAATTACATGTGTTTTCATG+TGG | + | chr6.2:74576108-74576127 | None:intergenic | 30.0% |
! | CACATTGTGATTTCATTTTC+AGG | - | chr6.2:74575652-74575671 | MS.gene27429:intron | 30.0% |
!! | TAATTCGACAGTGTTTTAAG+CGG | + | chr6.2:74575751-74575770 | None:intergenic | 30.0% |
!! | TTTTCATGTGGATTTTAGTG+AGG | + | chr6.2:74576096-74576115 | None:intergenic | 30.0% |
!!! | TGATCTCTAGTGTTTTGATT+TGG | - | chr6.2:74576332-74576351 | MS.gene27429:CDS | 30.0% |
AAACATCGAATTTGGGGATA+AGG | + | chr6.2:74576202-74576221 | None:intergenic | 35.0% | |
AACATCGAATTTGGGGATAA+GGG | + | chr6.2:74576201-74576220 | None:intergenic | 35.0% | |
AAGGAATTCATGTTAGTGCT+TGG | - | chr6.2:74575385-74575404 | MS.gene27429:CDS | 35.0% | |
ACCGTATAATATCATCCCAA+CGG | - | chr6.2:74575844-74575863 | MS.gene27429:intron | 35.0% | |
ACGGACTTAAGGAGTTAAAA+TGG | - | chr6.2:74575863-74575882 | MS.gene27429:intron | 35.0% | |
AGAAATGTCGTAACTCGTAA+GGG | + | chr6.2:74575584-74575603 | None:intergenic | 35.0% | |
CATTCTTGAGACGTAAGTAA+GGG | - | chr6.2:74575786-74575805 | MS.gene27429:intron | 35.0% | |
GAAGGGTAATTTGGTCATTT+GGG | - | chr6.2:74575923-74575942 | MS.gene27429:intron | 35.0% | |
GGTCATGTAGATGATAAAAG+TGG | - | chr6.2:74575542-74575561 | MS.gene27429:intron | 35.0% | |
TCATTCTTGAGACGTAAGTA+AGG | - | chr6.2:74575785-74575804 | MS.gene27429:intron | 35.0% | |
TCCGTTGGGATGATATTATA+CGG | + | chr6.2:74575848-74575867 | None:intergenic | 35.0% | |
TGAAGGGTAATTTGGTCATT+TGG | - | chr6.2:74575922-74575941 | MS.gene27429:intron | 35.0% | |
TGGAGCTTATAAGGTAACTT+GGG | - | chr6.2:74575416-74575435 | MS.gene27429:CDS | 35.0% | |
TTGGAGCTTATAAGGTAACT+TGG | - | chr6.2:74575415-74575434 | MS.gene27429:CDS | 35.0% | |
TTTAACTCCTTAAGTCCGTT+GGG | + | chr6.2:74575862-74575881 | None:intergenic | 35.0% | |
TTTAGAAGCTTGGAGAAAGT+TGG | + | chr6.2:74575986-74576005 | None:intergenic | 35.0% | |
! | AAATGGTTACGAGATAATGG+AGG | - | chr6.2:74575880-74575899 | MS.gene27429:intron | 35.0% |
! | GAAGTGAAGGGAAAATGTTT+TGG | + | chr6.2:74576014-74576033 | None:intergenic | 35.0% |
! | TTTGATTCTTGGTTCGAACT+TGG | + | chr6.2:74576431-74576450 | None:intergenic | 35.0% |
!! | AATGGTTACGAGATAATGGA+GGG | - | chr6.2:74575881-74575900 | MS.gene27429:intron | 35.0% |
!! | AATTCGACAGTGTTTTAAGC+GGG | + | chr6.2:74575750-74575769 | None:intergenic | 35.0% |
!! | TTTTAACTCCTTAAGTCCGT+TGG | + | chr6.2:74575863-74575882 | None:intergenic | 35.0% |
AAGACATAGCAGCTGCAAAA+GGG | - | chr6.2:74575472-74575491 | MS.gene27429:intron | 40.0% | |
CAGAAATGTCGTAACTCGTA+AGG | + | chr6.2:74575585-74575604 | None:intergenic | 40.0% | |
CCAAATAGGATCAAGTGCAA+TGG | - | chr6.2:74575694-74575713 | MS.gene27429:intron | 40.0% | |
CCATTGCACTTGATCCTATT+TGG | + | chr6.2:74575697-74575716 | None:intergenic | 40.0% | |
GGAGCTTATAAGGTAACTTG+GGG | - | chr6.2:74575417-74575436 | MS.gene27429:CDS | 40.0% | |
TAAGGGTTTGATTCAGCTGA+TGG | + | chr6.2:74576184-74576203 | None:intergenic | 40.0% | |
TATAAGGTAACTTGGGGTTC+AGG | - | chr6.2:74575423-74575442 | MS.gene27429:CDS | 40.0% | |
! | AGGGAATTTTGCAAGGAGAA+AGG | - | chr6.2:74575366-74575385 | MS.gene27429:CDS | 40.0% |
! | ATATCATCCCAACGGACTTA+AGG | - | chr6.2:74575852-74575871 | MS.gene27429:intron | 40.0% |
! | GAAACTGAGGGAATTTTGCA+AGG | - | chr6.2:74575359-74575378 | MS.gene27429:CDS | 40.0% |
!! | CTTGTGAGCTTTGAGCTTAA+GGG | - | chr6.2:74576249-74576268 | MS.gene27429:CDS | 40.0% |
!! | GGATTTTAGTGAGGATTGAG+TGG | + | chr6.2:74576087-74576106 | None:intergenic | 40.0% |
!!! | ATTTTCAGGTTGCACTCAGA+TGG | - | chr6.2:74575666-74575685 | MS.gene27429:intron | 40.0% |
!!! | TTTTCAGGTTGCACTCAGAT+GGG | - | chr6.2:74575667-74575686 | MS.gene27429:intron | 40.0% |
AAAAGGGAAGACTACAGCTC+AGG | - | chr6.2:74575488-74575507 | MS.gene27429:intron | 45.0% | |
AGAGAGGGAGAAGAAGTGAA+GGG | + | chr6.2:74576026-74576045 | None:intergenic | 45.0% | |
CAAGACATAGCAGCTGCAAA+AGG | - | chr6.2:74575471-74575490 | MS.gene27429:intron | 45.0% | |
CTCAGATGGGTGTACCAAAT+AGG | - | chr6.2:74575680-74575699 | MS.gene27429:intron | 45.0% | |
GGATTGAGTGGAAGAAGCAA+TGG | + | chr6.2:74576075-74576094 | None:intergenic | 45.0% | |
GGTTTGATTCAGCTGATGGA+GGG | + | chr6.2:74576180-74576199 | None:intergenic | 45.0% | |
GTCAGCACTTGGAGCTTATA+AGG | - | chr6.2:74575407-74575426 | MS.gene27429:CDS | 45.0% | |
TACATGACACAAGCAAGCCA+TGG | - | chr6.2:74576142-74576161 | MS.gene27429:intron | 45.0% | |
TGAGTGGAAGAAGCAATGGA+GGG | + | chr6.2:74576071-74576090 | None:intergenic | 45.0% | |
TTGAGTGGAAGAAGCAATGG+AGG | + | chr6.2:74576072-74576091 | None:intergenic | 45.0% | |
!! | GCTTGTGAGCTTTGAGCTTA+AGG | - | chr6.2:74576248-74576267 | MS.gene27429:CDS | 45.0% |
!!! | ATATAAATTTTGTTTATAAA+TGG | - | chr6.2:74575521-74575540 | MS.gene27429:intron | 5.0% |
AGGTGGAGATGAATCCCTCT+TGG | - | chr6.2:74575328-74575347 | MS.gene27429:CDS | 50.0% | |
AGTTTCCCTTGCTGCCAAGA+GGG | + | chr6.2:74575345-74575364 | None:intergenic | 50.0% | |
ATGAATCCCTCTTGGCAGCA+AGG | - | chr6.2:74575336-74575355 | MS.gene27429:CDS | 50.0% | |
CACTTCTTCTCCCTCTCTCT+CGG | - | chr6.2:74576028-74576047 | MS.gene27429:CDS | 50.0% | |
GAGAGAGGGAGAAGAAGTGA+AGG | + | chr6.2:74576027-74576046 | None:intergenic | 50.0% | |
GGGTTTGATTCAGCTGATGG+AGG | + | chr6.2:74576181-74576200 | None:intergenic | 50.0% | |
GTTAGTGCTTGGTCAGCACT+TGG | - | chr6.2:74575396-74575415 | MS.gene27429:CDS | 50.0% | |
TAGCTACACTTCTGTCACGC+AGG | + | chr6.2:74576387-74576406 | None:intergenic | 50.0% | |
TGAATCCCTCTTGGCAGCAA+GGG | - | chr6.2:74575337-74575356 | MS.gene27429:CDS | 50.0% | |
TGGAAGAAGCAATGGAGGGA+GGG | + | chr6.2:74576067-74576086 | None:intergenic | 50.0% | |
TTGGCAGCAAGGGAAACTGA+GGG | - | chr6.2:74575347-74575366 | MS.gene27429:CDS | 50.0% | |
! | GATGATTTGGCCGAGAGAGA+GGG | + | chr6.2:74576041-74576060 | None:intergenic | 50.0% |
!! | GAGCTTAAGGGTGCTGTTGT+GGG | - | chr6.2:74576261-74576280 | MS.gene27429:CDS | 50.0% |
!! | TGAGCTTAAGGGTGCTGTTG+TGG | - | chr6.2:74576260-74576279 | MS.gene27429:CDS | 50.0% |
AGAAGCAATGGAGGGAGGGA+AGG | + | chr6.2:74576063-74576082 | None:intergenic | 55.0% | |
CAGCTGATGGAGGGAGAAGA+GGG | + | chr6.2:74576171-74576190 | None:intergenic | 55.0% | |
CAGTTTCCCTTGCTGCCAAG+AGG | + | chr6.2:74575346-74575365 | None:intergenic | 55.0% | |
CTACACTTCTGTCACGCAGG+AGG | + | chr6.2:74576384-74576403 | None:intergenic | 55.0% | |
CTTGGCAGCAAGGGAAACTG+AGG | - | chr6.2:74575346-74575365 | MS.gene27429:CDS | 55.0% | |
GAGGGAGAAGAGGGAATCCA+TGG | + | chr6.2:74576162-74576181 | None:intergenic | 55.0% | |
GGAGGGAGGGAAGGATGATT+TGG | + | chr6.2:74576054-74576073 | None:intergenic | 55.0% | |
GTGGAAGAAGCAATGGAGGG+AGG | + | chr6.2:74576068-74576087 | None:intergenic | 55.0% | |
TCAGCTGATGGAGGGAGAAG+AGG | + | chr6.2:74576172-74576191 | None:intergenic | 55.0% | |
! | GGATGATTTGGCCGAGAGAG+AGG | + | chr6.2:74576042-74576061 | None:intergenic | 55.0% |
!! | GGTGCTGTTGTGGGTTCACA+AGG | - | chr6.2:74576270-74576289 | MS.gene27429:CDS | 55.0% |
! | TTGGGGTTCAGGCGCTGTCG+TGG | - | chr6.2:74575434-74575453 | MS.gene27429:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 74575297 | 74576456 | 74575297 | ID=MS.gene27429 |
chr6.2 | mRNA | 74575297 | 74576456 | 74575297 | ID=MS.gene27429.t1;Parent=MS.gene27429 |
chr6.2 | exon | 74576244 | 74576456 | 74576244 | ID=MS.gene27429.t1.exon1;Parent=MS.gene27429.t1 |
chr6.2 | CDS | 74576244 | 74576456 | 74576244 | ID=cds.MS.gene27429.t1;Parent=MS.gene27429.t1 |
chr6.2 | exon | 74576014 | 74576079 | 74576014 | ID=MS.gene27429.t1.exon2;Parent=MS.gene27429.t1 |
chr6.2 | CDS | 74576014 | 74576079 | 74576014 | ID=cds.MS.gene27429.t1;Parent=MS.gene27429.t1 |
chr6.2 | exon | 74575297 | 74575461 | 74575297 | ID=MS.gene27429.t1.exon3;Parent=MS.gene27429.t1 |
chr6.2 | CDS | 74575297 | 74575461 | 74575297 | ID=cds.MS.gene27429.t1;Parent=MS.gene27429.t1 |
Gene Sequence |
Protein sequence |