AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27430.t1 MTR_4g072350 81.790 324 56 1 1 324 1 321 0.0 552
MS.gene27430.t1 MTR_4g072360 77.399 323 70 1 1 323 1 320 0.0 526
MS.gene27430.t1 MTR_4g072320 77.709 323 63 3 1 323 1 314 0.0 521
MS.gene27430.t1 MTR_6g073110 60.125 321 125 1 1 321 1 318 4.58e-148 419
MS.gene27430.t1 MTR_0374s0050 50.920 326 146 3 1 323 1 315 6.31e-112 327
MS.gene27430.t1 MTR_3g083130 49.533 321 139 8 8 321 9 313 3.54e-101 300
MS.gene27430.t1 MTR_4g036845 46.729 321 161 7 5 323 2 314 1.25e-92 278
MS.gene27430.t1 MTR_5g097900 50.162 309 135 7 16 321 19 311 2.39e-90 272
MS.gene27430.t1 MTR_5g097910 51.916 287 128 5 16 300 19 297 3.99e-90 272
MS.gene27430.t1 MTR_5g097940 51.916 287 128 5 16 300 19 297 3.99e-90 272
MS.gene27430.t1 MTR_8g070095 45.768 319 157 7 11 323 10 318 3.61e-88 267
MS.gene27430.t1 MTR_6g072650 82.000 150 5 1 175 324 10 137 4.14e-84 250
MS.gene27430.t1 MTR_8g070115 42.547 322 175 5 3 323 2 314 2.40e-82 252
MS.gene27430.t1 MTR_4g021350 43.492 315 164 7 11 323 10 312 1.36e-79 245
MS.gene27430.t1 MTR_7g063580 43.119 327 172 7 1 323 37 353 8.34e-78 242
MS.gene27430.t1 MTR_4g021410 41.925 322 166 7 1 321 1 302 9.71e-73 227
MS.gene27430.t1 MTR_4g021350 44.097 288 148 6 11 297 10 285 1.11e-71 224
MS.gene27430.t1 MTR_4g021450 41.049 324 170 7 1 323 1 304 3.23e-70 221
MS.gene27430.t1 MTR_7g070500 38.217 314 179 7 11 321 17 318 7.58e-68 215
MS.gene27430.t1 MTR_4g021410 43.571 280 140 6 43 321 3 265 4.43e-67 211
MS.gene27430.t1 MTR_7g070500 38.014 292 169 5 11 302 17 296 7.64e-62 199
MS.gene27430.t1 MTR_4g072060 38.127 299 166 8 9 297 3 292 6.84e-57 186
MS.gene27430.t1 MTR_4g021410 43.802 242 119 5 81 321 1 226 4.57e-55 179
MS.gene27430.t1 MTR_4g021450 42.623 244 123 5 81 323 1 228 1.10e-52 173
MS.gene27430.t1 MTR_4g021450 45.556 180 93 2 145 323 10 185 6.22e-49 162
MS.gene27430.t1 MTR_6g072710 63.717 113 41 0 193 305 1 113 7.31e-49 159
MS.gene27430.t1 MTR_6g072705 95.652 46 2 0 110 155 40 85 2.86e-26 100
MS.gene27430.t1 MTR_3g449790 25.260 289 155 10 42 295 83 345 9.86e-13 68.6
MS.gene27430.t1 MTR_3g449790 25.952 289 159 12 42 295 83 351 2.85e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27430.t1 AT1G59960 51.299 308 146 2 17 323 21 325 8.43e-118 343
MS.gene27430.t1 AT1G59950 50.974 308 147 2 17 323 15 319 2.05e-108 318
MS.gene27430.t1 AT2G37790 48.089 314 152 5 11 323 10 313 1.44e-96 288
MS.gene27430.t1 AT2G37770 47.678 323 157 6 3 323 2 314 6.03e-95 284
MS.gene27430.t1 AT3G53880 46.178 314 159 5 11 323 10 314 1.61e-89 270
MS.gene27430.t1 AT5G62420 44.937 316 163 8 11 323 8 315 4.04e-87 264
MS.gene27430.t1 AT2G37760 45.541 314 157 5 11 323 10 310 4.53e-86 261
MS.gene27430.t1 AT2G37760 45.541 314 157 5 11 323 10 310 4.53e-86 261
MS.gene27430.t1 AT2G37760 45.675 289 144 4 11 299 10 285 1.65e-79 244
MS.gene27430.t1 AT2G37760 45.172 290 146 4 11 300 10 286 5.15e-79 243
MS.gene27430.t1 AT2G37760 45.172 290 146 4 11 300 10 286 5.15e-79 243
MS.gene27430.t1 AT3G53880 45.645 287 147 4 11 297 10 287 9.04e-79 243
MS.gene27430.t1 AT5G01670 39.628 323 180 8 2 321 9 319 9.28e-77 238
MS.gene27430.t1 AT2G37760 46.008 263 135 4 62 323 8 264 8.53e-71 221
MS.gene27430.t1 AT2G37760 46.008 263 135 4 62 323 8 264 8.53e-71 221
MS.gene27430.t1 AT5G01670 36.571 350 180 9 2 321 9 346 1.08e-70 223
MS.gene27430.t1 AT2G21260 39.000 300 164 8 8 297 2 292 3.70e-65 208
MS.gene27430.t1 AT2G21250 38.000 300 167 8 8 297 2 292 1.09e-63 204
MS.gene27430.t1 AT2G37770 49.528 212 96 5 3 213 2 203 7.88e-60 193
MS.gene27430.t1 AT2G21250 38.589 241 129 8 8 238 2 233 1.25e-46 158
MS.gene27430.t1 AT2G21260 36.818 220 124 6 86 295 8 222 5.54e-41 143
MS.gene27430.t1 AT1G06690 25.952 289 159 10 42 295 94 362 5.99e-14 72.4

Find 74 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGAGCATACAAAGTATTT+TGG 0.154726 6.2:-74570863 MS.gene27430:CDS
TGAAGCACTCACTTCAATTT+TGG 0.182067 6.2:-74571631 MS.gene27430:CDS
GTGATTCCCTTTGACATAAA+AGG 0.219739 6.2:-74571228 MS.gene27430:CDS
TCCACAATGCAGACTTTATA+AGG 0.257806 6.2:-74570264 MS.gene27430:CDS
TTTGATACAGCTTCCATCTA+TGG 0.292043 6.2:-74571579 MS.gene27430:CDS
GAAACTGAACCAAGAAGAAT+TGG 0.348726 6.2:-74570303 MS.gene27430:CDS
TCAGCAATTTCCTGAAGAAT+AGG 0.369772 6.2:+74570816 None:intergenic
ATGGAAGATTGTTACAGATT+AGG 0.375258 6.2:-74571192 MS.gene27430:CDS
TCAATTGGTGTTAGCAACTT+TGG 0.387263 6.2:-74571159 MS.gene27430:CDS
AAAACCTTGAAATATTTGAT+TGG 0.391571 6.2:-74570325 MS.gene27430:CDS
GATGGAGAACCCTATTCTTC+AGG 0.395066 6.2:-74570826 MS.gene27430:CDS
CATGAGGTGATACTAAATTC+AGG 0.395724 6.2:-74571708 MS.gene27430:CDS
AAAAGGAACATGGAAAACTA+TGG 0.396324 6.2:-74571211 MS.gene27430:CDS
GAAGTGAGTGCTTCATTTGA+TGG 0.396380 6.2:+74571639 None:intergenic
CAGCAATTTCCTGAAGAATA+GGG 0.397981 6.2:+74570817 None:intergenic
AGTTTCCCTTGTTGCCATGA+TGG 0.413836 6.2:+74570936 None:intergenic
GTTTCCAATCAAATATTTCA+AGG 0.435069 6.2:+74570321 None:intergenic
AGGTTCTTCAGTACCATAGA+TGG 0.437474 6.2:+74571566 None:intergenic
TCTTGCAGATAGCACTAAGA+TGG 0.451601 6.2:-74570406 MS.gene27430:intron
AAATGGACCTTACAAATCCT+TGG 0.461855 6.2:-74570222 MS.gene27430:CDS
TCTTATACCTGATTAACTGC+GGG 0.469519 6.2:+74571093 None:intergenic
GAGGAGTTGTAGCAGTTCCT+AGG 0.469679 6.2:+74571664 None:intergenic
TGGATCTCTACTTGATTCAC+TGG 0.472213 6.2:-74571302 MS.gene27430:CDS
GTTGAAGGCTTTAACTTCAC+AGG 0.475700 6.2:-74571258 MS.gene27430:CDS
AGCTCTTCCAAGGATTTGTA+AGG 0.476136 6.2:+74570215 None:intergenic
ATTGTTTAGGAATCTGAGGT+TGG 0.476463 6.2:-74571331 MS.gene27430:intron
TAGAAAGAAGAGTGTAGCTC+AGG 0.477815 6.2:-74570790 MS.gene27430:intron
GGGGAAAAGATGCCAATGAT+TGG 0.478604 6.2:-74571687 MS.gene27430:CDS
TTAGGCTTAGCCAAGTCAAT+TGG 0.481418 6.2:-74571174 MS.gene27430:CDS
ACATCTTCTTTCAATCTCAC+TGG 0.482395 6.2:+74571279 None:intergenic
CATGGCAACAAGGGAAACTC+AGG 0.493453 6.2:-74570932 MS.gene27430:CDS
GAATCTGAGGTTGGAGTATG+TGG 0.495354 6.2:-74571322 MS.gene27430:CDS
TGTGTGTGCATGGTCACCAT+TGG 0.497595 6.2:-74570883 MS.gene27430:CDS
GCAGTTCCTAGGCCAATCAT+TGG 0.498919 6.2:+74571675 None:intergenic
GTGTGTGCATGGTCACCATT+GGG 0.511118 6.2:-74570882 MS.gene27430:CDS
AGTGCTTCATTTGATGGAAG+AGG 0.516844 6.2:+74571645 None:intergenic
ATGAGGTGATACTAAATTCA+GGG 0.518353 6.2:-74571707 MS.gene27430:CDS
AGGGAATTCTGCATGAAGAA+AGG 0.520886 6.2:-74570912 MS.gene27430:CDS
AGAGAACAATGCTTGCTTGA+GGG 0.524372 6.2:+74571416 None:intergenic
CAAATCCTTGGAAGAGCTGT+GGG 0.525762 6.2:-74570210 MS.gene27430:CDS
AAGATGCCAATGATTGGCCT+AGG 0.530278 6.2:-74571681 MS.gene27430:CDS
CCTTTGACATAAAAGGAACA+TGG 0.535164 6.2:-74571221 MS.gene27430:CDS
TCATCATGACCTTGTTCTCA+AGG 0.538439 6.2:-74571451 MS.gene27430:CDS
ATGTTTGTAGCCAATGTCAA+TGG 0.539798 6.2:+74571602 None:intergenic
AGATTGAAAGAAGATGTTGA+AGG 0.547100 6.2:-74571273 MS.gene27430:CDS
TTGGGGTTCTAATGCTGTGA+TGG 0.554067 6.2:-74570844 MS.gene27430:CDS
CTGAATTTAGTATCACCTCA+TGG 0.555888 6.2:+74571709 None:intergenic
TTCTTATACCTGATTAACTG+CGG 0.571235 6.2:+74571092 None:intergenic
GTTGCTAACACCAATTGACT+TGG 0.574197 6.2:+74571164 None:intergenic
TTGGTTGATGCCATTGACAT+TGG 0.577375 6.2:-74571612 MS.gene27430:CDS
TTTGACACAGCTTTGCCTAG+AGG 0.577754 6.2:+74571546 None:intergenic
ACCATCCCACAGCTCTTCCA+AGG 0.580081 6.2:+74570205 None:intergenic
ATGAATCCATCATGGCAACA+AGG 0.583038 6.2:-74570942 MS.gene27430:CDS
GAACAATGCTTGCTTGAGGG+TGG 0.589137 6.2:+74571419 None:intergenic
AGGTAGAAATGAATCCATCA+TGG 0.594785 6.2:-74570950 MS.gene27430:CDS
ACAAATCCTTGGAAGAGCTG+TGG 0.595019 6.2:-74570211 MS.gene27430:CDS
TGAAAAGCTTCAACAAAGAG+AGG 0.595864 6.2:-74570355 MS.gene27430:CDS
TGAATCCATCATGGCAACAA+GGG 0.596651 6.2:-74570941 MS.gene27430:CDS
GTGTCAAAAGCATTAGAGAT+CGG 0.603073 6.2:-74571531 MS.gene27430:CDS
GAGAGAACAATGCTTGCTTG+AGG 0.603868 6.2:+74571415 None:intergenic
GCCTTATAAAGTCTGCATTG+TGG 0.609832 6.2:+74570263 None:intergenic
TGGAATTGTTTAGGAATCTG+AGG 0.613504 6.2:-74571335 MS.gene27430:intron
AGGCTTTAACTTCACAGGAG+AGG 0.613527 6.2:-74571253 MS.gene27430:CDS
TATGGTACTGAAGAACCTCT+AGG 0.616094 6.2:-74571561 MS.gene27430:CDS
AATACTTTGTATGCTCCCAA+TGG 0.618795 6.2:+74570867 None:intergenic
CTTATACCTGATTAACTGCG+GGG 0.623376 6.2:+74571094 None:intergenic
AAGGAATTCATGTGTGTGCA+TGG 0.624563 6.2:-74570893 MS.gene27430:CDS
TATTCTTCAGGAAATTGCTG+AGG 0.645519 6.2:-74570814 MS.gene27430:CDS
TTATACCTGATTAACTGCGG+GGG 0.653482 6.2:+74571095 None:intergenic
TGAGGTGATACTAAATTCAG+GGG 0.660799 6.2:-74571706 MS.gene27430:CDS
TCCTTGGAAGAGCTGTGGGA+TGG 0.668107 6.2:-74570206 MS.gene27430:CDS
ATGGCAACAAGGGAAACTCA+GGG 0.675053 6.2:-74570931 MS.gene27430:CDS
CTAAGATGGATACATGAGCA+AGG 0.686586 6.2:-74570392 MS.gene27430:CDS
GGAGGCAAATAAACTCCATG+AGG 0.708954 6.2:-74571724 MS.gene27430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACCTTGAAATATTTGAT+TGG - chr6.2:74571597-74571616 MS.gene27430:CDS 20.0%
!! AAATGATACAAAATTAGAGA+AGG + chr6.2:74570562-74570581 None:intergenic 20.0%
!! ACCTTAAAATGTTAGATAAA+TGG - chr6.2:74571229-74571248 MS.gene27430:CDS 20.0%
!! AGTATTAACGTAATATTGAT+TGG + chr6.2:74570897-74570916 None:intergenic 20.0%
!!! AATTTTGTATCATTTTCTGT+TGG - chr6.2:74570567-74570586 MS.gene27430:intron 20.0%
!!! GAAATGTTTTTATCTGAAAA+TGG - chr6.2:74571683-74571702 MS.gene27430:CDS 20.0%
!!! GCTTATACATAAGTAATTTT+AGG - chr6.2:74571459-74571478 MS.gene27430:CDS 20.0%
!!! TTTTCATTACTTCTAAGTTA+TGG - chr6.2:74570437-74570456 MS.gene27430:intron 20.0%
! GTTTCCAATCAAATATTTCA+AGG + chr6.2:74571604-74571623 None:intergenic 25.0%
! TATGAACATAAATACTTGTG+AGG - chr6.2:74571281-74571300 MS.gene27430:CDS 25.0%
! TGTTATGAAATTCACTCAAT+TGG - chr6.2:74570926-74570945 MS.gene27430:CDS 25.0%
!! ATATTGATTGGTTAATGACT+CGG + chr6.2:74570885-74570904 None:intergenic 25.0%
!! ATTTTCTGTTGGAATTGTTT+AGG - chr6.2:74570578-74570597 MS.gene27430:intron 25.0%
!! GCCATTTATCTAACATTTTA+AGG + chr6.2:74571233-74571252 None:intergenic 25.0%
AAAAGGAACATGGAAAACTA+TGG - chr6.2:74570711-74570730 MS.gene27430:intron 30.0%
AGATTGAAAGAAGATGTTGA+AGG - chr6.2:74570649-74570668 MS.gene27430:intron 30.0%
ATGAGGTGATACTAAATTCA+GGG - chr6.2:74570215-74570234 MS.gene27430:CDS 30.0%
ATGGAAGATTGTTACAGATT+AGG - chr6.2:74570730-74570749 MS.gene27430:intron 30.0%
TTCTTATACCTGATTAACTG+CGG + chr6.2:74570833-74570852 None:intergenic 30.0%
! CATGTCGATTATTTGGATTT+AGG - chr6.2:74570952-74570971 MS.gene27430:intron 30.0%
! CATGTTCCTTTTATGTCAAA+GGG + chr6.2:74570703-74570722 None:intergenic 30.0%
! TGATTTTGTCCAATTCTTCT+TGG + chr6.2:74571631-74571650 None:intergenic 30.0%
!! CTCTCGAACTTTTTCTTTTA+AGG - chr6.2:74570525-74570544 MS.gene27430:intron 30.0%
!!! TTTCATCGCGATTTTTTATG+AGG + chr6.2:74570417-74570436 None:intergenic 30.0%
AAATGGACCTTACAAATCCT+TGG - chr6.2:74571700-74571719 MS.gene27430:CDS 35.0%
AATACTTTGTATGCTCCCAA+TGG + chr6.2:74571058-74571077 None:intergenic 35.0%
ACATCTTCTTTCAATCTCAC+TGG + chr6.2:74570646-74570665 None:intergenic 35.0%
AGGTAGAAATGAATCCATCA+TGG - chr6.2:74570972-74570991 MS.gene27430:intron 35.0%
ATGTTTGTAGCCAATGTCAA+TGG + chr6.2:74570323-74570342 None:intergenic 35.0%
ATTGGAAACAGCTAATGACA+TGG - chr6.2:74571331-74571350 MS.gene27430:intron 35.0%
CAGCAATTTCCTGAAGAATA+GGG + chr6.2:74571108-74571127 None:intergenic 35.0%
CATGAGGTGATACTAAATTC+AGG - chr6.2:74570214-74570233 MS.gene27430:CDS 35.0%
CCTTTGACATAAAAGGAACA+TGG - chr6.2:74570701-74570720 MS.gene27430:intron 35.0%
CTGAATTTAGTATCACCTCA+TGG + chr6.2:74570216-74570235 None:intergenic 35.0%
CTGCACTAAGAAATCTAAAG+AGG + chr6.2:74571255-74571274 None:intergenic 35.0%
GAAACTGAACCAAGAAGAAT+TGG - chr6.2:74571619-74571638 MS.gene27430:CDS 35.0%
GTGATTCCCTTTGACATAAA+AGG - chr6.2:74570694-74570713 MS.gene27430:intron 35.0%
TATTCTTCAGGAAATTGCTG+AGG - chr6.2:74571108-74571127 MS.gene27430:CDS 35.0%
TCAGCAATTTCCTGAAGAAT+AGG + chr6.2:74571109-74571128 None:intergenic 35.0%
TCCACAATGCAGACTTTATA+AGG - chr6.2:74571658-74571677 MS.gene27430:CDS 35.0%
TCTTATACCTGATTAACTGC+GGG + chr6.2:74570832-74570851 None:intergenic 35.0%
TGAAAAGCTTCAACAAAGAG+AGG - chr6.2:74571567-74571586 MS.gene27430:CDS 35.0%
TGAGGTGATACTAAATTCAG+GGG - chr6.2:74570216-74570235 MS.gene27430:CDS 35.0%
TGGAATTGTTTAGGAATCTG+AGG - chr6.2:74570587-74570606 MS.gene27430:intron 35.0%
TTTGATACAGCTTCCATCTA+TGG - chr6.2:74570343-74570362 MS.gene27430:CDS 35.0%
! AGGTTTCAGAACAGTTTGTT+AGG + chr6.2:74571213-74571232 None:intergenic 35.0%
! ATTGTTTAGGAATCTGAGGT+TGG - chr6.2:74570591-74570610 MS.gene27430:intron 35.0%
! CCATGTTCCTTTTATGTCAA+AGG + chr6.2:74570704-74570723 None:intergenic 35.0%
! TAATGACTCGGACAAATACT+CGG + chr6.2:74570873-74570892 None:intergenic 35.0%
! TTGGTTGCATGTCGATTATT+TGG - chr6.2:74570945-74570964 MS.gene27430:CDS 35.0%
!! GGAGCATACAAAGTATTTTG+GGG - chr6.2:74571061-74571080 MS.gene27430:intron 35.0%
!! GGGAGCATACAAAGTATTTT+GGG - chr6.2:74571060-74571079 MS.gene27430:intron 35.0%
!! GTGTCAAAAGCATTAGAGAT+CGG - chr6.2:74570391-74570410 MS.gene27430:CDS 35.0%
!! TCAATTGGTGTTAGCAACTT+TGG - chr6.2:74570763-74570782 MS.gene27430:intron 35.0%
!! TGAAGCACTCACTTCAATTT+TGG - chr6.2:74570291-74570310 MS.gene27430:CDS 35.0%
!! TGGGAGCATACAAAGTATTT+TGG - chr6.2:74571059-74571078 MS.gene27430:intron 35.0%
AAACGACAGTAAAGAGCTGA+CGG + chr6.2:74571381-74571400 None:intergenic 40.0%
AAGGAATTCATGTGTGTGCA+TGG - chr6.2:74571029-74571048 MS.gene27430:intron 40.0%
AGAGAACAATGCTTGCTTGA+GGG + chr6.2:74570509-74570528 None:intergenic 40.0%
AGCTCTTCCAAGGATTTGTA+AGG + chr6.2:74571710-74571729 None:intergenic 40.0%
AGGGAATTCTGCATGAAGAA+AGG - chr6.2:74571010-74571029 MS.gene27430:intron 40.0%
AGGTTCTTCAGTACCATAGA+TGG + chr6.2:74570359-74570378 None:intergenic 40.0%
AGTGCTTCATTTGATGGAAG+AGG + chr6.2:74570280-74570299 None:intergenic 40.0%
ATGAATCCATCATGGCAACA+AGG - chr6.2:74570980-74570999 MS.gene27430:intron 40.0%
CAAAAAGCTTTCCCTACTCT+TGG - chr6.2:74570789-74570808 MS.gene27430:intron 40.0%
CTAAGATGGATACATGAGCA+AGG - chr6.2:74571530-74571549 MS.gene27430:CDS 40.0%
CTTATACCTGATTAACTGCG+GGG + chr6.2:74570831-74570850 None:intergenic 40.0%
GAAGTGAGTGCTTCATTTGA+TGG + chr6.2:74570286-74570305 None:intergenic 40.0%
GCCTTATAAAGTCTGCATTG+TGG + chr6.2:74571662-74571681 None:intergenic 40.0%
GTTGCTAACACCAATTGACT+TGG + chr6.2:74570761-74570780 None:intergenic 40.0%
TCATCATGACCTTGTTCTCA+AGG - chr6.2:74570471-74570490 MS.gene27430:intron 40.0%
TCTTGCAGATAGCACTAAGA+TGG - chr6.2:74571516-74571535 MS.gene27430:CDS 40.0%
TGAATCCATCATGGCAACAA+GGG - chr6.2:74570981-74571000 MS.gene27430:intron 40.0%
TGGATCTCTACTTGATTCAC+TGG - chr6.2:74570620-74570639 MS.gene27430:intron 40.0%
TTAGGCTTAGCCAAGTCAAT+TGG - chr6.2:74570748-74570767 MS.gene27430:intron 40.0%
TTATACCTGATTAACTGCGG+GGG + chr6.2:74570830-74570849 None:intergenic 40.0%
! GGTTGCATTTTCCAAGAGTA+GGG + chr6.2:74570803-74570822 None:intergenic 40.0%
! GTTGAAGGCTTTAACTTCAC+AGG - chr6.2:74570664-74570683 MS.gene27430:intron 40.0%
! TAGAAAGAAGAGTGTAGCTC+AGG - chr6.2:74571132-74571151 MS.gene27430:CDS 40.0%
! TATGGTACTGAAGAACCTCT+AGG - chr6.2:74570361-74570380 MS.gene27430:CDS 40.0%
! TGGTTGCATTTTCCAAGAGT+AGG + chr6.2:74570804-74570823 None:intergenic 40.0%
! TTATGACTTGTGAGAGCTCA+TGG - chr6.2:74571308-74571327 MS.gene27430:CDS 40.0%
! TTGGTTGATGCCATTGACAT+TGG - chr6.2:74570310-74570329 MS.gene27430:CDS 40.0%
!! TTTTGAGAGCCTTGAGAACA+AGG + chr6.2:74570483-74570502 None:intergenic 40.0%
ACAAATCCTTGGAAGAGCTG+TGG - chr6.2:74571711-74571730 MS.gene27430:CDS 45.0%
ACTTGTGAGAGCTCATGGAT+TGG - chr6.2:74571313-74571332 MS.gene27430:CDS 45.0%
AGTTTCCCTTGTTGCCATGA+TGG + chr6.2:74570989-74571008 None:intergenic 45.0%
ATGGCAACAAGGGAAACTCA+GGG - chr6.2:74570991-74571010 MS.gene27430:intron 45.0%
CAAATCCTTGGAAGAGCTGT+GGG - chr6.2:74571712-74571731 MS.gene27430:CDS 45.0%
GAGAGAACAATGCTTGCTTG+AGG + chr6.2:74570510-74570529 None:intergenic 45.0%
GATGGAGAACCCTATTCTTC+AGG - chr6.2:74571096-74571115 MS.gene27430:intron 45.0%
GGAGGCAAATAAACTCCATG+AGG - chr6.2:74570198-74570217 MS.gene27430:CDS 45.0%
GGGGAAAAGATGCCAATGAT+TGG - chr6.2:74570235-74570254 MS.gene27430:CDS 45.0%
TTTGACACAGCTTTGCCTAG+AGG + chr6.2:74570379-74570398 None:intergenic 45.0%
! AAAGAAGAGTGTAGCTCAGG+TGG - chr6.2:74571135-74571154 MS.gene27430:CDS 45.0%
! AGGCTTTAACTTCACAGGAG+AGG - chr6.2:74570669-74570688 MS.gene27430:intron 45.0%
! GAATCTGAGGTTGGAGTATG+TGG - chr6.2:74570600-74570619 MS.gene27430:intron 45.0%
! TTGGGGTTCTAATGCTGTGA+TGG - chr6.2:74571078-74571097 MS.gene27430:intron 45.0%
!! AAGATGCCAATGATTGGCCT+AGG - chr6.2:74570241-74570260 MS.gene27430:CDS 45.0%
CATGGCAACAAGGGAAACTC+AGG - chr6.2:74570990-74571009 MS.gene27430:intron 50.0%
CATTTCCCCCGCAGTTAATC+AGG - chr6.2:74570822-74570841 MS.gene27430:CDS 50.0%
CTGATTAACTGCGGGGGAAA+TGG + chr6.2:74570824-74570843 None:intergenic 50.0%
GAACAATGCTTGCTTGAGGG+TGG + chr6.2:74570506-74570525 None:intergenic 50.0%
GAGGAGTTGTAGCAGTTCCT+AGG + chr6.2:74570261-74570280 None:intergenic 50.0%
GCAGTTCCTAGGCCAATCAT+TGG + chr6.2:74570250-74570269 None:intergenic 50.0%
GTGTGTGCATGGTCACCATT+GGG - chr6.2:74571040-74571059 MS.gene27430:intron 50.0%
TGTGTGTGCATGGTCACCAT+TGG - chr6.2:74571039-74571058 MS.gene27430:intron 50.0%
ACCATCCCACAGCTCTTCCA+AGG + chr6.2:74571720-74571739 None:intergenic 55.0%
TCCTTGGAAGAGCTGTGGGA+TGG - chr6.2:74571716-74571735 MS.gene27430:CDS 55.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 74570196 74571748 74570196 ID=MS.gene27430
chr6.2 mRNA 74570196 74571748 74570196 ID=MS.gene27430.t1;Parent=MS.gene27430
chr6.2 exon 74571423 74571748 74571423 ID=MS.gene27430.t1.exon1;Parent=MS.gene27430.t1
chr6.2 CDS 74571423 74571748 74571423 ID=cds.MS.gene27430.t1;Parent=MS.gene27430.t1
chr6.2 exon 74571101 74571344 74571101 ID=MS.gene27430.t1.exon2;Parent=MS.gene27430.t1
chr6.2 CDS 74571101 74571344 74571101 ID=cds.MS.gene27430.t1;Parent=MS.gene27430.t1
chr6.2 exon 74570791 74570970 74570791 ID=MS.gene27430.t1.exon3;Parent=MS.gene27430.t1
chr6.2 CDS 74570791 74570970 74570791 ID=cds.MS.gene27430.t1;Parent=MS.gene27430.t1
chr6.2 exon 74570196 74570420 74570196 ID=MS.gene27430.t1.exon4;Parent=MS.gene27430.t1
chr6.2 CDS 74570196 74570420 74570196 ID=cds.MS.gene27430.t1;Parent=MS.gene27430.t1
Gene Sequence

>MS.gene27430

ATGGAGGCAAATAAACTCCATGAGGTGATACTAAATTCAGGGGAAAAGATGCCAATGATTGGCCTAGGAACTGCTACAACTCCTCTTCCATCAAATGAAGCACTCACTTCAATTTTGGTTGATGCCATTGACATTGGCTACAAACATTTTGATACAGCTTCCATCTATGGTACTGAAGAACCTCTAGGCAAAGCTGTGTCAAAAGCATTAGAGATCGGCCTCATAAAAAATCGCGATGAAATTTTCATTACTTCTAAGTTATGGTGCACTGATGCTCATCATGACCTTGTTCTCAAGGCTCTCAAAACCACCCTCAAGCAAGCATTGTTCTCTCGAACTTTTTCTTTTAAGGTTGTATTTATTCCTTCTCTAATTTTGTATCATTTTCTGTTGGAATTGTTTAGGAATCTGAGGTTGGAGTATGTGGATCTCTACTTGATTCACTGGCCAGTGAGATTGAAAGAAGATGTTGAAGGCTTTAACTTCACAGGAGAGGATGTGATTCCCTTTGACATAAAAGGAACATGGAAAACTATGGAAGATTGTTACAGATTAGGCTTAGCCAAGTCAATTGGTGTTAGCAACTTTGGTATCAAAAAGCTTTCCCTACTCTTGGAAAATGCAACCATTTCCCCCGCAGTTAATCAGGTATAAGAAGTAATCAAATGAATTAACCGAGTATTTGTCCGAGTCATTAACCAATCAATATTACGTTAATACTGATATAACGTGTTATGAAATTCACTCAATTGGTTGCATGTCGATTATTTGGATTTAGGTAGAAATGAATCCATCATGGCAACAAGGGAAACTCAGGGAATTCTGCATGAAGAAAGGAATTCATGTGTGTGCATGGTCACCATTGGGAGCATACAAAGTATTTTGGGGTTCTAATGCTGTGATGGAGAACCCTATTCTTCAGGAAATTGCTGAGGCTAGAAAGAAGAGTGTAGCTCAGGTGGAATTGATTTTATAGTTCAAACTAATTTCGATTACAACTTTGATGAATCTTGTCCTAACAAACTGTTCTGAAACCTTAAAATGTTAGATAAATGGCCTCTTTAGATTTCTTAGTGCAGCTTATCTATGAACATAAATACTTGTGAGGCAGATTATGACTTGTGAGAGCTCATGGATTGGAAACAGCTAATGACATGGTCATAAGCTCTTTTCAGCTTATTTCCGTCAGCTCTTTACTGTCGTTTATGCAAATAATTTATAAGAAAAAAGTTTGACTTTATTTTAACTTTTGATATAAAAATAGCTTATACATAAGTAATTTTAGGATAAACAACATATGCACACTAATAAGCAAGTTTATCTTGCAGATAGCACTAAGATGGATACATGAGCAAGGAACAAGTGTAATTGTGAAAAGCTTCAACAAAGAGAGGATGAAACAAAACCTTGAAATATTTGATTGGAAACTGAACCAAGAAGAATTGGACAAAATCAATAAGATTCCACAATGCAGACTTTATAAGGCTGAAATGTTTTTATCTGAAAATGGACCTTACAAATCCTTGGAAGAGCTGTGGGATGGTGACCCTTGA
Protein sequence

>MS.gene27430.t1

MEANKLHEVILNSGEKMPMIGLGTATTPLPSNEALTSILVDAIDIGYKHFDTASIYGTEEPLGKAVSKALEIGLIKNRDEIFITSKLWCTDAHHDLVLKALKTTLKQALNLRLEYVDLYLIHWPVRLKEDVEGFNFTGEDVIPFDIKGTWKTMEDCYRLGLAKSIGVSNFGIKKLSLLLENATISPAVNQVEMNPSWQQGKLREFCMKKGIHVCAWSPLGAYKVFWGSNAVMENPILQEIAEARKKSVAQIALRWIHEQGTSVIVKSFNKERMKQNLEIFDWKLNQEELDKINKIPQCRLYKAEMFLSENGPYKSLEELWDGDP