Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27783.t1 | XP_003623699.1 | 82.2 | 630 | 14 | 2 | 180 | 711 | 176 | 805 | 2.90E-284 | 987.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27783.t1 | Q9AVK4 | 73.5 | 638 | 61 | 7 | 180 | 711 | 184 | 819 | 3.2e-247 | 855.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27783.t1 | A2Q3V8 | 82.2 | 630 | 14 | 2 | 180 | 711 | 176 | 805 | 2.1e-284 | 987.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene27783.t1 | TF | GRAS |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04985 | MS.gene27783 | 0.812394 | 4.33E-51 | -1.69E-46 |
MS.gene049989 | MS.gene27783 | 0.806186 | 9.30E-50 | -1.69E-46 |
MS.gene054999 | MS.gene27783 | 0.802798 | 4.73E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27783.t1 | MTR_7g074650 | 98.898 | 363 | 4 | 0 | 349 | 711 | 443 | 805 | 0.0 | 760 |
MS.gene27783.t1 | MTR_7g074650 | 89.266 | 354 | 25 | 6 | 1 | 349 | 1 | 346 | 3.70e-159 | 480 |
MS.gene27783.t1 | MTR_4g076020 | 58.873 | 355 | 129 | 4 | 349 | 699 | 89 | 430 | 1.98e-145 | 432 |
MS.gene27783.t1 | MTR_1g069725 | 50.000 | 392 | 187 | 6 | 310 | 697 | 76 | 462 | 2.09e-127 | 386 |
MS.gene27783.t1 | MTR_7g027190 | 40.751 | 373 | 194 | 6 | 349 | 698 | 305 | 673 | 6.89e-90 | 295 |
MS.gene27783.t1 | MTR_1g029420 | 37.978 | 366 | 212 | 6 | 347 | 698 | 228 | 592 | 3.16e-65 | 227 |
MS.gene27783.t1 | MTR_3g065980 | 35.979 | 378 | 204 | 11 | 349 | 700 | 177 | 542 | 2.13e-61 | 215 |
MS.gene27783.t1 | MTR_4g102790 | 35.294 | 374 | 208 | 10 | 351 | 699 | 299 | 663 | 8.40e-61 | 216 |
MS.gene27783.t1 | MTR_3g089055 | 35.792 | 366 | 220 | 6 | 347 | 698 | 201 | 565 | 1.25e-60 | 214 |
MS.gene27783.t1 | MTR_3g089055 | 35.792 | 366 | 220 | 6 | 347 | 698 | 206 | 570 | 1.35e-60 | 214 |
MS.gene27783.t1 | MTR_2g082090 | 35.813 | 363 | 218 | 6 | 349 | 697 | 217 | 578 | 5.25e-60 | 212 |
MS.gene27783.t1 | MTR_5g094450 | 34.430 | 395 | 239 | 9 | 322 | 698 | 140 | 532 | 2.36e-59 | 209 |
MS.gene27783.t1 | MTR_5g097480 | 34.332 | 367 | 220 | 7 | 349 | 698 | 182 | 544 | 5.24e-57 | 203 |
MS.gene27783.t1 | MTR_3g056110 | 32.090 | 402 | 257 | 7 | 311 | 698 | 143 | 542 | 3.75e-56 | 201 |
MS.gene27783.t1 | MTR_4g133660 | 35.608 | 337 | 202 | 6 | 375 | 697 | 207 | 542 | 7.05e-54 | 194 |
MS.gene27783.t1 | MTR_8g442410 | 33.083 | 399 | 244 | 8 | 318 | 698 | 132 | 525 | 7.77e-54 | 194 |
MS.gene27783.t1 | MTR_5g058860 | 35.904 | 376 | 208 | 12 | 353 | 697 | 123 | 496 | 9.14e-53 | 191 |
MS.gene27783.t1 | MTR_4g077760 | 35.988 | 339 | 195 | 10 | 375 | 698 | 224 | 555 | 1.37e-52 | 191 |
MS.gene27783.t1 | MTR_1g096030 | 32.031 | 384 | 220 | 11 | 348 | 698 | 84 | 459 | 1.30e-51 | 186 |
MS.gene27783.t1 | MTR_3g022830 | 29.197 | 411 | 230 | 8 | 347 | 698 | 28 | 436 | 6.76e-51 | 184 |
MS.gene27783.t1 | MTR_3g072710 | 36.267 | 375 | 203 | 14 | 353 | 697 | 131 | 499 | 2.21e-50 | 184 |
MS.gene27783.t1 | MTR_2g097410 | 31.335 | 367 | 236 | 6 | 349 | 699 | 376 | 742 | 2.73e-50 | 188 |
MS.gene27783.t1 | MTR_2g026250 | 32.544 | 338 | 213 | 6 | 375 | 698 | 260 | 596 | 2.53e-49 | 183 |
MS.gene27783.t1 | MTR_7g062120 | 30.137 | 365 | 241 | 6 | 349 | 699 | 377 | 741 | 5.80e-48 | 181 |
MS.gene27783.t1 | MTR_4g104020 | 30.811 | 370 | 235 | 8 | 348 | 698 | 153 | 520 | 1.94e-47 | 176 |
MS.gene27783.t1 | MTR_4g064120 | 29.730 | 370 | 240 | 7 | 349 | 699 | 259 | 627 | 8.23e-47 | 176 |
MS.gene27783.t1 | MTR_4g064200 | 29.787 | 376 | 244 | 8 | 340 | 699 | 280 | 651 | 3.81e-46 | 174 |
MS.gene27783.t1 | MTR_4g064150 | 30.352 | 369 | 239 | 7 | 349 | 699 | 366 | 734 | 3.86e-46 | 176 |
MS.gene27783.t1 | MTR_4g064160 | 30.411 | 365 | 240 | 5 | 349 | 699 | 321 | 685 | 4.25e-46 | 175 |
MS.gene27783.t1 | MTR_4g064180 | 30.000 | 370 | 239 | 8 | 349 | 699 | 259 | 627 | 1.99e-45 | 172 |
MS.gene27783.t1 | MTR_2g097310 | 31.351 | 370 | 228 | 10 | 349 | 699 | 277 | 639 | 7.06e-44 | 168 |
MS.gene27783.t1 | MTR_2g097350 | 30.769 | 364 | 238 | 8 | 349 | 699 | 279 | 641 | 1.12e-43 | 167 |
MS.gene27783.t1 | MTR_2g097467 | 28.342 | 374 | 251 | 6 | 340 | 699 | 285 | 655 | 5.72e-43 | 165 |
MS.gene27783.t1 | MTR_2g097463 | 28.723 | 376 | 251 | 6 | 338 | 699 | 284 | 656 | 3.12e-42 | 163 |
MS.gene27783.t1 | MTR_4g097080 | 28.075 | 374 | 243 | 11 | 347 | 699 | 136 | 504 | 3.35e-42 | 160 |
MS.gene27783.t1 | MTR_2g097390 | 30.495 | 364 | 239 | 8 | 349 | 699 | 280 | 642 | 1.15e-40 | 158 |
MS.gene27783.t1 | MTR_2g097473 | 28.075 | 374 | 252 | 7 | 340 | 699 | 285 | 655 | 1.02e-39 | 155 |
MS.gene27783.t1 | MTR_2g097380 | 30.411 | 365 | 209 | 11 | 349 | 699 | 229 | 562 | 2.00e-39 | 154 |
MS.gene27783.t1 | MTR_5g015490 | 27.895 | 380 | 242 | 13 | 347 | 699 | 117 | 491 | 2.14e-39 | 152 |
MS.gene27783.t1 | MTR_7g109580 | 30.585 | 376 | 246 | 10 | 336 | 698 | 181 | 554 | 3.66e-39 | 153 |
MS.gene27783.t1 | MTR_2g034280 | 30.997 | 371 | 232 | 11 | 349 | 698 | 208 | 575 | 9.92e-39 | 152 |
MS.gene27783.t1 | MTR_5g009080 | 40.957 | 188 | 106 | 2 | 352 | 536 | 64 | 249 | 2.58e-38 | 149 |
MS.gene27783.t1 | MTR_5g009080 | 38.255 | 149 | 87 | 3 | 552 | 698 | 333 | 478 | 1.17e-22 | 102 |
MS.gene27783.t1 | MTR_2g034260 | 30.667 | 375 | 232 | 12 | 348 | 698 | 214 | 584 | 2.32e-37 | 148 |
MS.gene27783.t1 | MTR_2g034250 | 29.759 | 373 | 237 | 12 | 349 | 698 | 215 | 585 | 3.77e-36 | 144 |
MS.gene27783.t1 | MTR_4g076140 | 40.107 | 187 | 109 | 2 | 352 | 536 | 56 | 241 | 1.92e-35 | 140 |
MS.gene27783.t1 | MTR_4g076140 | 37.584 | 149 | 88 | 3 | 552 | 698 | 324 | 469 | 2.34e-20 | 95.1 |
MS.gene27783.t1 | MTR_2g099110 | 26.649 | 379 | 241 | 9 | 351 | 699 | 81 | 452 | 5.59e-35 | 139 |
MS.gene27783.t1 | MTR_8g093070 | 28.698 | 338 | 206 | 12 | 380 | 699 | 177 | 497 | 2.21e-32 | 132 |
MS.gene27783.t1 | MTR_7g057230 | 27.297 | 370 | 240 | 11 | 347 | 697 | 297 | 656 | 5.93e-27 | 117 |
MS.gene27783.t1 | MTR_0092s0100 | 26.546 | 388 | 261 | 8 | 324 | 698 | 355 | 731 | 1.53e-26 | 115 |
MS.gene27783.t1 | MTR_4g026485 | 24.757 | 412 | 269 | 9 | 302 | 698 | 239 | 624 | 1.64e-26 | 115 |
MS.gene27783.t1 | MTR_0092s0100 | 26.546 | 388 | 261 | 8 | 324 | 698 | 352 | 728 | 2.36e-26 | 115 |
MS.gene27783.t1 | MTR_1g086970 | 25.401 | 374 | 251 | 12 | 348 | 698 | 110 | 478 | 1.15e-25 | 111 |
MS.gene27783.t1 | MTR_8g077940 | 26.596 | 376 | 247 | 13 | 340 | 698 | 178 | 541 | 4.37e-24 | 107 |
MS.gene27783.t1 | MTR_6g047750 | 28.940 | 349 | 206 | 13 | 377 | 698 | 329 | 662 | 3.35e-22 | 102 |
MS.gene27783.t1 | MTR_2g089100 | 21.827 | 394 | 259 | 11 | 349 | 699 | 57 | 444 | 5.41e-20 | 94.0 |
MS.gene27783.t1 | MTR_5g015950 | 22.947 | 414 | 252 | 14 | 348 | 699 | 39 | 447 | 2.09e-18 | 89.0 |
MS.gene27783.t1 | MTR_3g053270 | 22.947 | 414 | 252 | 14 | 348 | 699 | 39 | 447 | 2.09e-18 | 89.0 |
MS.gene27783.t1 | MTR_8g020840 | 24.479 | 384 | 241 | 13 | 351 | 698 | 178 | 548 | 1.21e-17 | 87.4 |
MS.gene27783.t1 | MTR_4g095500 | 22.831 | 438 | 268 | 15 | 323 | 699 | 41 | 469 | 1.34e-15 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27783.t1 | AT3G54220 | 62.375 | 598 | 131 | 10 | 176 | 699 | 74 | 651 | 0.0 | 709 |
MS.gene27783.t1 | AT5G41920 | 56.787 | 361 | 144 | 6 | 349 | 701 | 48 | 404 | 1.88e-136 | 407 |
MS.gene27783.t1 | AT1G14920 | 37.158 | 366 | 201 | 11 | 349 | 698 | 177 | 529 | 1.43e-62 | 218 |
MS.gene27783.t1 | AT1G66350 | 35.162 | 401 | 232 | 12 | 306 | 698 | 126 | 506 | 1.62e-62 | 218 |
MS.gene27783.t1 | AT1G50600 | 35.052 | 388 | 236 | 7 | 325 | 698 | 141 | 526 | 8.40e-62 | 216 |
MS.gene27783.t1 | AT3G03450 | 37.127 | 369 | 202 | 11 | 349 | 698 | 188 | 545 | 1.68e-61 | 216 |
MS.gene27783.t1 | AT1G50600 | 35.052 | 388 | 236 | 7 | 325 | 698 | 212 | 597 | 3.67e-61 | 216 |
MS.gene27783.t1 | AT1G50600 | 35.052 | 388 | 236 | 7 | 325 | 698 | 216 | 601 | 3.69e-61 | 216 |
MS.gene27783.t1 | AT1G63100 | 34.715 | 386 | 229 | 9 | 335 | 697 | 243 | 628 | 1.12e-60 | 215 |
MS.gene27783.t1 | AT2G04890 | 35.457 | 361 | 217 | 7 | 349 | 698 | 58 | 413 | 4.54e-60 | 208 |
MS.gene27783.t1 | AT1G63100 | 34.715 | 386 | 229 | 9 | 335 | 697 | 268 | 653 | 4.69e-60 | 214 |
MS.gene27783.t1 | AT2G01570 | 36.612 | 366 | 203 | 11 | 349 | 698 | 229 | 581 | 2.19e-59 | 211 |
MS.gene27783.t1 | AT5G17490 | 35.310 | 371 | 216 | 11 | 341 | 698 | 157 | 516 | 1.09e-56 | 202 |
MS.gene27783.t1 | AT5G66770 | 36.066 | 366 | 207 | 12 | 352 | 698 | 227 | 584 | 3.63e-55 | 199 |
MS.gene27783.t1 | AT5G48150 | 33.333 | 381 | 224 | 9 | 340 | 698 | 118 | 490 | 5.17e-53 | 191 |
MS.gene27783.t1 | AT5G48150 | 33.333 | 381 | 224 | 9 | 340 | 698 | 118 | 490 | 5.17e-53 | 191 |
MS.gene27783.t1 | AT5G48150 | 33.333 | 381 | 224 | 9 | 340 | 698 | 118 | 490 | 5.17e-53 | 191 |
MS.gene27783.t1 | AT5G48150 | 33.333 | 381 | 224 | 9 | 340 | 698 | 118 | 490 | 5.17e-53 | 191 |
MS.gene27783.t1 | AT1G21450 | 34.341 | 364 | 225 | 5 | 349 | 698 | 230 | 593 | 2.90e-52 | 191 |
MS.gene27783.t1 | AT4G17230 | 33.422 | 377 | 230 | 7 | 340 | 699 | 154 | 526 | 3.46e-52 | 189 |
MS.gene27783.t1 | AT4G17230 | 33.422 | 377 | 230 | 7 | 340 | 699 | 154 | 526 | 3.46e-52 | 189 |
MS.gene27783.t1 | AT5G59450 | 27.664 | 441 | 297 | 10 | 285 | 706 | 171 | 608 | 1.47e-47 | 178 |
MS.gene27783.t1 | AT1G07530 | 30.874 | 366 | 238 | 6 | 349 | 699 | 401 | 766 | 1.60e-45 | 174 |
MS.gene27783.t1 | AT2G37650 | 29.863 | 365 | 240 | 6 | 349 | 699 | 340 | 702 | 7.88e-45 | 171 |
MS.gene27783.t1 | AT2G37650 | 29.863 | 365 | 240 | 6 | 349 | 699 | 352 | 714 | 1.01e-44 | 171 |
MS.gene27783.t1 | AT3G50650 | 32.692 | 364 | 220 | 10 | 354 | 698 | 185 | 542 | 5.42e-44 | 167 |
MS.gene27783.t1 | AT1G55580 | 32.576 | 396 | 216 | 12 | 352 | 698 | 52 | 445 | 6.43e-43 | 161 |
MS.gene27783.t1 | AT2G29060 | 30.270 | 370 | 237 | 9 | 349 | 699 | 289 | 656 | 8.79e-41 | 159 |
MS.gene27783.t1 | AT2G29060 | 29.620 | 395 | 254 | 10 | 324 | 699 | 304 | 693 | 1.11e-40 | 159 |
MS.gene27783.t1 | AT3G46600 | 29.076 | 368 | 242 | 8 | 348 | 699 | 8 | 372 | 1.38e-40 | 153 |
MS.gene27783.t1 | AT3G46600 | 29.155 | 367 | 241 | 8 | 349 | 699 | 217 | 580 | 5.73e-40 | 155 |
MS.gene27783.t1 | AT3G46600 | 29.155 | 367 | 241 | 8 | 349 | 699 | 185 | 548 | 7.90e-40 | 155 |
MS.gene27783.t1 | AT4G37650 | 27.532 | 385 | 244 | 10 | 347 | 699 | 149 | 530 | 2.00e-39 | 153 |
MS.gene27783.t1 | AT4G08250 | 30.337 | 356 | 230 | 8 | 358 | 697 | 123 | 476 | 5.28e-38 | 148 |
MS.gene27783.t1 | AT2G29065 | 27.926 | 376 | 243 | 10 | 349 | 699 | 257 | 629 | 2.93e-36 | 145 |
MS.gene27783.t1 | AT1G07520 | 27.877 | 391 | 255 | 9 | 333 | 699 | 307 | 694 | 5.13e-36 | 145 |
MS.gene27783.t1 | AT1G07520 | 27.877 | 391 | 255 | 9 | 333 | 699 | 308 | 695 | 5.16e-36 | 145 |
MS.gene27783.t1 | AT1G07520 | 27.877 | 391 | 255 | 9 | 333 | 699 | 143 | 530 | 5.37e-36 | 143 |
MS.gene27783.t1 | AT1G07520 | 27.877 | 391 | 255 | 9 | 333 | 699 | 143 | 530 | 5.37e-36 | 143 |
MS.gene27783.t1 | AT1G50420 | 38.830 | 188 | 112 | 1 | 352 | 536 | 65 | 252 | 1.71e-34 | 138 |
MS.gene27783.t1 | AT1G50420 | 34.416 | 154 | 96 | 3 | 547 | 698 | 329 | 479 | 3.06e-19 | 92.0 |
MS.gene27783.t1 | AT5G52510 | 28.421 | 380 | 230 | 11 | 349 | 698 | 273 | 640 | 3.39e-30 | 127 |
MS.gene27783.t1 | AT3G60630 | 30.351 | 313 | 170 | 11 | 416 | 698 | 328 | 622 | 8.62e-25 | 110 |
MS.gene27783.t1 | AT4G36710 | 26.330 | 376 | 249 | 11 | 340 | 698 | 121 | 485 | 1.18e-24 | 108 |
MS.gene27783.t1 | AT4G00150 | 28.863 | 343 | 210 | 13 | 369 | 698 | 233 | 554 | 1.14e-23 | 106 |
MS.gene27783.t1 | AT2G45160 | 29.508 | 305 | 180 | 10 | 416 | 698 | 348 | 639 | 5.09e-22 | 101 |
MS.gene27783.t1 | AT3G49950 | 25.722 | 381 | 247 | 15 | 349 | 699 | 35 | 409 | 6.16e-19 | 90.5 |
MS.gene27783.t1 | AT3G13840 | 27.297 | 370 | 233 | 14 | 351 | 698 | 155 | 510 | 1.09e-18 | 90.5 |
Find 106 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATCTTTCCAACCAAGTTTA+AGG | 0.116743 | 7.3:-30662864 | None:intergenic |
TTACCTTCTTCCACAGAAAA+AGG | 0.239785 | 7.3:+30660231 | MS.gene27783:CDS |
GTGAGATAAAGTTTCATAAT+TGG | 0.256096 | 7.3:+30662716 | MS.gene27783:CDS |
ACAGTTACTGTTTCTGTTGC+TGG | 0.272831 | 7.3:-30660592 | None:intergenic |
TCCACTACTGTTACCACTTT+AGG | 0.285917 | 7.3:-30662505 | None:intergenic |
TATACTTTGGTTGAGGATAA+TGG | 0.311713 | 7.3:+30662838 | MS.gene27783:CDS |
GCTGCTTGTGCTTTGTTCAA+TGG | 0.326297 | 7.3:+30659952 | MS.gene27783:CDS |
CATTCTCTATATGATGTTAC+TGG | 0.333927 | 7.3:+30661860 | MS.gene27783:CDS |
GAGCAATGCAGGTTCATTCT+TGG | 0.338861 | 7.3:+30662537 | MS.gene27783:CDS |
TCGCAGCTTTCAACGCCTTT+CGG | 0.347062 | 7.3:+30661341 | MS.gene27783:CDS |
ATGAGTGTAGTTTGAGTTTG+AGG | 0.358577 | 7.3:-30660472 | None:intergenic |
TTTCCAACTTTCTCAGCAAC+AGG | 0.359463 | 7.3:-30661776 | None:intergenic |
TCAGCATTATTTGATTCTCT+TGG | 0.361167 | 7.3:+30662589 | MS.gene27783:CDS |
TTTATCTCACCACTCCTTGA+TGG | 0.363245 | 7.3:-30662703 | None:intergenic |
ACACAAGCTAGTCTTCTTCT+TGG | 0.369111 | 7.3:+30662796 | MS.gene27783:CDS |
AACCATGTTCCTAATATTTG+TGG | 0.381285 | 7.3:+30660522 | MS.gene27783:CDS |
GTTTCTGTTGCTGGTTCTGT+TGG | 0.383646 | 7.3:-30660583 | None:intergenic |
AAACCTCAGCTGCAACAAAC+TGG | 0.395103 | 7.3:+30660676 | MS.gene27783:CDS |
TATGTGAGACTCACTGGATT+AGG | 0.397735 | 7.3:+30661671 | MS.gene27783:CDS |
TAACTCTTCACCTTCTATGA+TGG | 0.414564 | 7.3:+30660650 | MS.gene27783:CDS |
CAGAAGCTGTTGCTGTTCAT+TGG | 0.419326 | 7.3:+30661831 | MS.gene27783:CDS |
TTCATTCTTGGGAAGGTTTG+TGG | 0.421301 | 7.3:+30662549 | MS.gene27783:CDS |
TCAAGAACAAGAGCAAGGTT+TGG | 0.421529 | 7.3:-30660795 | None:intergenic |
CAAAAGCTTCTTGTATAGCT+TGG | 0.424689 | 7.3:-30661547 | None:intergenic |
GCTGCAACAAACTGGATTGA+TGG | 0.429027 | 7.3:+30660684 | MS.gene27783:CDS |
ATGGTATCCTTAAACTTGGT+TGG | 0.429657 | 7.3:+30662857 | MS.gene27783:CDS |
AGCAATGCAGGTTCATTCTT+GGG | 0.429990 | 7.3:+30662538 | MS.gene27783:CDS |
CCCTTCTGAAGGGTATACTT+TGG | 0.433004 | 7.3:+30662825 | MS.gene27783:CDS |
AGACTAGTGAGTTCATGTTT+AGG | 0.434001 | 7.3:+30661413 | MS.gene27783:CDS |
ATCTTCACTACTGATATTGC+TGG | 0.434098 | 7.3:-30660016 | None:intergenic |
GATTCTCTTGGTTCAAGCTA+TGG | 0.434363 | 7.3:+30662601 | MS.gene27783:CDS |
TGTTGCTGGTTCTGTTGGGT+TGG | 0.440162 | 7.3:-30660578 | None:intergenic |
TTTCCTGTTGCTGAGAAAGT+TGG | 0.444010 | 7.3:+30661773 | MS.gene27783:CDS |
CATATCCTTGCTTCAAGACC+AGG | 0.445706 | 7.3:+30661638 | MS.gene27783:CDS |
TTTCTGTTGCTGGTTCTGTT+GGG | 0.451663 | 7.3:-30660582 | None:intergenic |
CTTGGCATGTTCCCTTCTGA+AGG | 0.451744 | 7.3:+30662814 | MS.gene27783:CDS |
GTTTGCTTACTGCTTCTGCT+TGG | 0.455432 | 7.3:+30662890 | MS.gene27783:CDS |
TTGCTCTTGTTCTTGAACAT+AGG | 0.455705 | 7.3:+30660802 | MS.gene27783:CDS |
TTGAGATTGTTGGAAGAAGA+AGG | 0.456597 | 7.3:-30660444 | None:intergenic |
CGTAACGTTCTTGCAGTTGG+TGG | 0.465242 | 7.3:+30662679 | MS.gene27783:CDS |
TTTAGAGGTATCTCTTTGGC+TGG | 0.469891 | 7.3:+30662763 | MS.gene27783:CDS |
GTTTGAAGCACTATTGTTGT+TGG | 0.471893 | 7.3:-30659992 | None:intergenic |
CCTCCTTATGTGAGACTCAC+TGG | 0.475283 | 7.3:+30661665 | MS.gene27783:CDS |
TGAGGAATTGTTGAGATTGT+TGG | 0.475428 | 7.3:-30660454 | None:intergenic |
GCAACAGGAAAGAACTCAAA+AGG | 0.485861 | 7.3:-30661761 | None:intergenic |
TTGTTGTTGTGGCATGTTGG+TGG | 0.486113 | 7.3:-30660061 | None:intergenic |
GAACAAGACTTGAGCAATGC+AGG | 0.491335 | 7.3:+30662526 | MS.gene27783:CDS |
TTTCTCTCAGGAACAACACT+TGG | 0.491378 | 7.3:-30660849 | None:intergenic |
GTTCAGATACAAACACTTTG+TGG | 0.494320 | 7.3:+30661882 | MS.gene27783:CDS |
AAATGAGAGAATTTCACAAA+TGG | 0.504284 | 7.3:-30661515 | None:intergenic |
ATGTAGGTTGGCACCTAAAG+TGG | 0.505838 | 7.3:+30662492 | MS.gene27783:intron |
TGAAGGGTATACTTTGGTTG+AGG | 0.506995 | 7.3:+30662831 | MS.gene27783:CDS |
TAGCAACATAGTGGAGTAGT+TGG | 0.507219 | 7.3:-30660421 | None:intergenic |
TATGACATTGTTGGAATGAA+AGG | 0.510105 | 7.3:-30662920 | None:intergenic |
AATCCAGTTTGTTGCAGCTG+AGG | 0.510974 | 7.3:-30660679 | None:intergenic |
TTGTTGTTGTTGTGGCATGT+TGG | 0.511794 | 7.3:-30660064 | None:intergenic |
AAAATCTATTGTTGTTGTTG+TGG | 0.516540 | 7.3:-30660155 | None:intergenic |
CACTGGATTAGGTACTTCCA+TGG | 0.517366 | 7.3:+30661682 | MS.gene27783:CDS |
ATGGAAACACTTGAAGCTAC+TGG | 0.517893 | 7.3:+30661701 | MS.gene27783:CDS |
CTCACATAAGGAGGTCCACC+TGG | 0.520829 | 7.3:-30661656 | None:intergenic |
AGTAGCTTCAAGTGTTTCCA+TGG | 0.526271 | 7.3:-30661699 | None:intergenic |
ATGCAAGGTTTACAATGGCC+TGG | 0.527385 | 7.3:+30661608 | MS.gene27783:CDS |
GATAATGGTATCCTTAAACT+TGG | 0.528102 | 7.3:+30662853 | MS.gene27783:CDS |
ATTCGTAACGTTCTTGCAGT+TGG | 0.528879 | 7.3:+30662676 | MS.gene27783:CDS |
ACACTTTGTGGCTCTTGCAA+AGG | 0.531826 | 7.3:+30661894 | MS.gene27783:CDS |
TTGGCATGTTCCCTTCTGAA+GGG | 0.532685 | 7.3:+30662815 | MS.gene27783:CDS |
AGTAACTGTAACATAAGTTC+TGG | 0.539385 | 7.3:+30660606 | MS.gene27783:CDS |
CTAACATTGTTGATGAGTTG+AGG | 0.539907 | 7.3:-30660750 | None:intergenic |
AGAGCAAGGTTTGGATTACA+AGG | 0.541984 | 7.3:-30660786 | None:intergenic |
ACCAAAGTATACCCTTCAGA+AGG | 0.543263 | 7.3:-30662826 | None:intergenic |
TTGGTTGTGACGGTCACAGT+GGG | 0.545379 | 7.3:-30660402 | None:intergenic |
TTGCAGTTGGTGGACCATCA+AGG | 0.546702 | 7.3:+30662689 | MS.gene27783:CDS |
ATGCAGGTTCATTCTTGGGA+AGG | 0.550894 | 7.3:+30662542 | MS.gene27783:CDS |
GAGGTTTCATCCATCATAGA+AGG | 0.554125 | 7.3:-30660660 | None:intergenic |
TCATACCACATCATAACTGA+TGG | 0.555692 | 7.3:+30662938 | MS.gene27783:CDS |
GAGGAATTAACATTAGAAGC+AGG | 0.557000 | 7.3:-30660918 | None:intergenic |
AGAAGAAGGTAGCAACATAG+TGG | 0.560888 | 7.3:-30660430 | None:intergenic |
ATTGTTGATGAGTTGAGGAA+TGG | 0.561897 | 7.3:-30660745 | None:intergenic |
ATGATGTGGTATGACATTGT+TGG | 0.567016 | 7.3:-30662929 | None:intergenic |
AATCCAGTGAGTCTCACATA+AGG | 0.568715 | 7.3:-30661668 | None:intergenic |
ATTATTATTATTTGTACCTG+CGG | 0.572319 | 7.3:-30660277 | None:intergenic |
ATAGATCTTGATATCATGCA+AGG | 0.576982 | 7.3:+30661593 | MS.gene27783:CDS |
AGAGAGTGAAGAGAGACATG+TGG | 0.579883 | 7.3:+30662627 | MS.gene27783:CDS |
GTCCACCTGGTCTTGAAGCA+AGG | 0.584919 | 7.3:-30661643 | None:intergenic |
TGATTATGTAGTGTGTGTGG+TGG | 0.599368 | 7.3:-30661452 | None:intergenic |
ATATCATGCAAGGTTTACAA+TGG | 0.601849 | 7.3:+30661603 | MS.gene27783:CDS |
ATGACATTGTTGGAATGAAA+GGG | 0.601926 | 7.3:-30662919 | None:intergenic |
AACCACAAATATTAGGAACA+TGG | 0.615138 | 7.3:-30660524 | None:intergenic |
TATGTTCAAGAACAAGAGCA+AGG | 0.620046 | 7.3:-30660800 | None:intergenic |
GAGTGAAGAGAGACATGTGG+TGG | 0.624909 | 7.3:+30662630 | MS.gene27783:CDS |
CCAAAGTATACCCTTCAGAA+GGG | 0.626039 | 7.3:-30662825 | None:intergenic |
AGTGGAGTAGTTGGTTGTGA+CGG | 0.635058 | 7.3:-30660412 | None:intergenic |
TAGATCCATCAGTTATGATG+TGG | 0.639240 | 7.3:-30662943 | None:intergenic |
ACCTAAAGTGGTAACAGTAG+TGG | 0.640826 | 7.3:+30662504 | MS.gene27783:CDS |
CCAGTGAGTCTCACATAAGG+AGG | 0.642698 | 7.3:-30661665 | None:intergenic |
CTTTGTGCTGATGTACCGAA+AGG | 0.646157 | 7.3:-30661356 | None:intergenic |
ACAACAACAACACTAGCCGC+AGG | 0.647867 | 7.3:+30660261 | MS.gene27783:CDS |
GTTGGTTGTGACGGTCACAG+TGG | 0.651008 | 7.3:-30660403 | None:intergenic |
ATCCTTGCTTCAAGACCAGG+TGG | 0.657302 | 7.3:+30661641 | MS.gene27783:CDS |
AGAGAAAAGCTTCAACAGTG+TGG | 0.663978 | 7.3:+30662739 | MS.gene27783:CDS |
AGGTAAAGTACAATTCAATG+AGG | 0.676877 | 7.3:-30660214 | None:intergenic |
ACATTGTTGGAATGAAAGGG+AGG | 0.683514 | 7.3:-30662916 | None:intergenic |
GTTGGTGGACCATCAAGGAG+TGG | 0.725373 | 7.3:+30662694 | MS.gene27783:CDS |
GAGGAACAATGTCATCAACA+CGG | 0.736939 | 7.3:-30660956 | None:intergenic |
TGGTTGTGACGGTCACAGTG+GGG | 0.753890 | 7.3:-30660401 | None:intergenic |
ACGGTTCATGAGTTTCACTG+AGG | 0.765117 | 7.3:-30660937 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATAATCTACATGATTTAG+TGG | + | chr7.3:30662015-30662034 | MS.gene27783:intron | 20.0% |
!! | ATTATTATTATTTGTACCTG+CGG | - | chr7.3:30660280-30660299 | None:intergenic | 20.0% |
!! | GGTAATAGTAATAAAAGTTT+AGG | + | chr7.3:30661919-30661938 | MS.gene27783:intron | 20.0% |
!! | TATAGTTTCTAATTATCCAT+TGG | + | chr7.3:30662312-30662331 | MS.gene27783:intron | 20.0% |
!! | TTCAAAAATACACAAATAAG+AGG | + | chr7.3:30662413-30662432 | MS.gene27783:intron | 20.0% |
!! | TTTATCTGTGTTATATATGT+AGG | + | chr7.3:30662476-30662495 | MS.gene27783:intron | 20.0% |
!!! | TTATTGTTGTTATTGATTTG+TGG | - | chr7.3:30661044-30661063 | None:intergenic | 20.0% |
! | AAATGAGAGAATTTCACAAA+TGG | - | chr7.3:30661518-30661537 | None:intergenic | 25.0% |
! | AATAACAAGAAAGAAGAAAG+AGG | + | chr7.3:30661196-30661215 | MS.gene27783:intron | 25.0% |
! | ATCAAAACATGTTTCCAAAT+TGG | + | chr7.3:30661012-30661031 | MS.gene27783:intron | 25.0% |
! | ATTGAAGAAGTAATGTTAGA+AGG | - | chr7.3:30661262-30661281 | None:intergenic | 25.0% |
! | CAAACTATAACAACATTTCA+TGG | - | chr7.3:30661957-30661976 | None:intergenic | 25.0% |
! | GTGAGATAAAGTTTCATAAT+TGG | + | chr7.3:30662716-30662735 | MS.gene27783:CDS | 25.0% |
! | TATACAAAACCAACAAGAAT+TGG | - | chr7.3:30661996-30662015 | None:intergenic | 25.0% |
! | TCAAAACATGTTTCCAAATT+GGG | + | chr7.3:30661013-30661032 | MS.gene27783:intron | 25.0% |
!! | AAAATCTATTGTTGTTGTTG+TGG | - | chr7.3:30660158-30660177 | None:intergenic | 25.0% |
!! | TTACCTTTAGAAGAGAAAAA+AGG | - | chr7.3:30662138-30662157 | None:intergenic | 25.0% |
!! | TTCTCTTCTAAAGGTAAAAT+TGG | + | chr7.3:30662141-30662160 | MS.gene27783:intron | 25.0% |
!!! | AAAAGTGCTTAGAAAAAGAA+TGG | + | chr7.3:30660104-30660123 | MS.gene27783:CDS | 25.0% |
AACCACAAATATTAGGAACA+TGG | - | chr7.3:30660527-30660546 | None:intergenic | 30.0% | |
AACCATGTTCCTAATATTTG+TGG | + | chr7.3:30660522-30660541 | MS.gene27783:CDS | 30.0% | |
AATTATCCATTGGATTTGCA+TGG | + | chr7.3:30662322-30662341 | MS.gene27783:intron | 30.0% | |
AGGTAAAGTACAATTCAATG+AGG | - | chr7.3:30660217-30660236 | None:intergenic | 30.0% | |
AGTAACTGTAACATAAGTTC+TGG | + | chr7.3:30660606-30660625 | MS.gene27783:CDS | 30.0% | |
ATAGATCTTGATATCATGCA+AGG | + | chr7.3:30661593-30661612 | MS.gene27783:CDS | 30.0% | |
ATATCATGCAAGGTTTACAA+TGG | + | chr7.3:30661603-30661622 | MS.gene27783:CDS | 30.0% | |
ATGACATTGTTGGAATGAAA+GGG | - | chr7.3:30662922-30662941 | None:intergenic | 30.0% | |
ATTATCCATTGGATTTGCAT+GGG | + | chr7.3:30662323-30662342 | MS.gene27783:intron | 30.0% | |
CAAAACATGTTTCCAAATTG+GGG | + | chr7.3:30661014-30661033 | MS.gene27783:intron | 30.0% | |
CAAAAGAAGAAAGATGAAGA+AGG | + | chr7.3:30661230-30661249 | MS.gene27783:intron | 30.0% | |
CAATAACAACAATAACCCTT+TGG | + | chr7.3:30661049-30661068 | MS.gene27783:intron | 30.0% | |
CATTCTCTATATGATGTTAC+TGG | + | chr7.3:30661860-30661879 | MS.gene27783:CDS | 30.0% | |
CCAGAAAAACCACAAATATT+AGG | - | chr7.3:30660534-30660553 | None:intergenic | 30.0% | |
CTTGATGAATCAGAAAAATG+AGG | - | chr7.3:30660978-30660997 | None:intergenic | 30.0% | |
TATACTTTGGTTGAGGATAA+TGG | + | chr7.3:30662838-30662857 | MS.gene27783:CDS | 30.0% | |
TATGACATTGTTGGAATGAA+AGG | - | chr7.3:30662923-30662942 | None:intergenic | 30.0% | |
TCAGCATTATTTGATTCTCT+TGG | + | chr7.3:30662589-30662608 | MS.gene27783:CDS | 30.0% | |
TCTGTGTTATATATGTAGGT+TGG | + | chr7.3:30662480-30662499 | MS.gene27783:intron | 30.0% | |
! | AAAAAGAATGGCTTCTGAAA+TGG | + | chr7.3:30660116-30660135 | MS.gene27783:CDS | 30.0% |
! | CCTAATATTTGTGGTTTTTC+TGG | + | chr7.3:30660531-30660550 | MS.gene27783:CDS | 30.0% |
! | GATAATGGTATCCTTAAACT+TGG | + | chr7.3:30662853-30662872 | MS.gene27783:CDS | 30.0% |
! | TACTCTTTTCCAATTCTTGT+TGG | + | chr7.3:30661984-30662003 | MS.gene27783:intron | 30.0% |
! | TCTGATTTTGCATCTAAACT+TGG | + | chr7.3:30661734-30661753 | MS.gene27783:CDS | 30.0% |
! | TTTGCATGGGATTTTTATTC+TGG | + | chr7.3:30662336-30662355 | MS.gene27783:intron | 30.0% |
!! | TTTTGATTATGTAGTGTGTG+TGG | - | chr7.3:30661458-30661477 | None:intergenic | 30.0% |
!!! | CTACCTTTTTTCTCTTCTAA+AGG | + | chr7.3:30662132-30662151 | MS.gene27783:intron | 30.0% |
AAAATCCCATGCAAATCCAA+TGG | - | chr7.3:30662331-30662350 | None:intergenic | 35.0% | |
AGACTAGTGAGTTCATGTTT+AGG | + | chr7.3:30661413-30661432 | MS.gene27783:CDS | 35.0% | |
ATCTTCACTACTGATATTGC+TGG | - | chr7.3:30660019-30660038 | None:intergenic | 35.0% | |
ATGATGTGGTATGACATTGT+TGG | - | chr7.3:30662932-30662951 | None:intergenic | 35.0% | |
ATGGTATCCTTAAACTTGGT+TGG | + | chr7.3:30662857-30662876 | MS.gene27783:CDS | 35.0% | |
CAAAAGCTTCTTGTATAGCT+TGG | - | chr7.3:30661550-30661569 | None:intergenic | 35.0% | |
GAGGAATTAACATTAGAAGC+AGG | - | chr7.3:30660921-30660940 | None:intergenic | 35.0% | |
GATCTTTCCAACCAAGTTTA+AGG | - | chr7.3:30662867-30662886 | None:intergenic | 35.0% | |
GTGAAGGTAAAGTAACCAAA+GGG | - | chr7.3:30661067-30661086 | None:intergenic | 35.0% | |
GTGAGCACTATAGTCTATAA+AGG | - | chr7.3:30662105-30662124 | None:intergenic | 35.0% | |
GTTCAGATACAAACACTTTG+TGG | + | chr7.3:30661882-30661901 | MS.gene27783:CDS | 35.0% | |
TAACTCTTCACCTTCTATGA+TGG | + | chr7.3:30660650-30660669 | MS.gene27783:CDS | 35.0% | |
TATGTTCAAGAACAAGAGCA+AGG | - | chr7.3:30660803-30660822 | None:intergenic | 35.0% | |
TGAGGAATTGTTGAGATTGT+TGG | - | chr7.3:30660457-30660476 | None:intergenic | 35.0% | |
TGATTTAGTGGTTGCTGATA+TGG | + | chr7.3:30662027-30662046 | MS.gene27783:intron | 35.0% | |
TGTGAAGGTAAAGTAACCAA+AGG | - | chr7.3:30661068-30661087 | None:intergenic | 35.0% | |
TTACCTTCTTCCACAGAAAA+AGG | + | chr7.3:30660231-30660250 | MS.gene27783:CDS | 35.0% | |
TTGAGATTGTTGGAAGAAGA+AGG | - | chr7.3:30660447-30660466 | None:intergenic | 35.0% | |
TTGCTCTTGTTCTTGAACAT+AGG | + | chr7.3:30660802-30660821 | MS.gene27783:CDS | 35.0% | |
! | AGCACTTTTCTTTCAGAATG+AGG | - | chr7.3:30660093-30660112 | None:intergenic | 35.0% |
! | ATGAGTGTAGTTTGAGTTTG+AGG | - | chr7.3:30660475-30660494 | None:intergenic | 35.0% |
! | ATTGTTGATGAGTTGAGGAA+TGG | - | chr7.3:30660748-30660767 | None:intergenic | 35.0% |
! | CTAACATTGTTGATGAGTTG+AGG | - | chr7.3:30660753-30660772 | None:intergenic | 35.0% |
! | GTTTGAAGCACTATTGTTGT+TGG | - | chr7.3:30659995-30660014 | None:intergenic | 35.0% |
! | TGTTGTAACACCTTTTTCTG+TGG | - | chr7.3:30660244-30660263 | None:intergenic | 35.0% |
!! | CTGGATTGATGGTATTTTGA+AGG | + | chr7.3:30660695-30660714 | MS.gene27783:CDS | 35.0% |
!! | TGATCTTGTTGTGTTGATTG+TGG | - | chr7.3:30661092-30661111 | None:intergenic | 35.0% |
!! | TTTTCAACAACCACTTGTTG+AGG | + | chr7.3:30660494-30660513 | MS.gene27783:CDS | 35.0% |
!!! | GTGTTGTTTCTTTTTCTCTC+AGG | - | chr7.3:30660864-30660883 | None:intergenic | 35.0% |
!!! | TCAGCTTTTCAAGTCTTCAA+TGG | + | chr7.3:30661485-30661504 | MS.gene27783:CDS | 35.0% |
!!! | TGGTTTTAGAGGTATCTCTT+TGG | + | chr7.3:30662759-30662778 | MS.gene27783:CDS | 35.0% |
!!! | TGGTTTTGAGATGGAAAAAG+TGG | - | chr7.3:30660561-30660580 | None:intergenic | 35.0% |
AATCCAGTGAGTCTCACATA+AGG | - | chr7.3:30661671-30661690 | None:intergenic | 40.0% | |
ACATTGTTGGAATGAAAGGG+AGG | - | chr7.3:30662919-30662938 | None:intergenic | 40.0% | |
ACCAAAGTATACCCTTCAGA+AGG | - | chr7.3:30662829-30662848 | None:intergenic | 40.0% | |
ACCTAAAGTGGTAACAGTAG+TGG | + | chr7.3:30662504-30662523 | MS.gene27783:CDS | 40.0% | |
AGAAGAAGGTAGCAACATAG+TGG | - | chr7.3:30660433-30660452 | None:intergenic | 40.0% | |
AGAGAAAAGCTTCAACAGTG+TGG | + | chr7.3:30662739-30662758 | MS.gene27783:CDS | 40.0% | |
AGAGCAAGGTTTGGATTACA+AGG | - | chr7.3:30660789-30660808 | None:intergenic | 40.0% | |
AGCAATGCAGGTTCATTCTT+GGG | + | chr7.3:30662538-30662557 | MS.gene27783:CDS | 40.0% | |
AGTAGCTTCAAGTGTTTCCA+TGG | - | chr7.3:30661702-30661721 | None:intergenic | 40.0% | |
ATGGAAACACTTGAAGCTAC+TGG | + | chr7.3:30661701-30661720 | MS.gene27783:CDS | 40.0% | |
ATTCGTAACGTTCTTGCAGT+TGG | + | chr7.3:30662676-30662695 | MS.gene27783:CDS | 40.0% | |
CCAAAGTATACCCTTCAGAA+GGG | - | chr7.3:30662828-30662847 | None:intergenic | 40.0% | |
GAGGAACAATGTCATCAACA+CGG | - | chr7.3:30660959-30660978 | None:intergenic | 40.0% | |
GAGGTTTCATCCATCATAGA+AGG | - | chr7.3:30660663-30660682 | None:intergenic | 40.0% | |
GATTCTCTTGGTTCAAGCTA+TGG | + | chr7.3:30662601-30662620 | MS.gene27783:CDS | 40.0% | |
GCAACAGGAAAGAACTCAAA+AGG | - | chr7.3:30661764-30661783 | None:intergenic | 40.0% | |
GCAAGGATATGAAAAAGACC+AGG | - | chr7.3:30661629-30661648 | None:intergenic | 40.0% | |
TATGTGAGACTCACTGGATT+AGG | + | chr7.3:30661671-30661690 | MS.gene27783:CDS | 40.0% | |
TCAAGAACAAGAGCAAGGTT+TGG | - | chr7.3:30660798-30660817 | None:intergenic | 40.0% | |
TCCACTACTGTTACCACTTT+AGG | - | chr7.3:30662508-30662527 | None:intergenic | 40.0% | |
TGATTATGTAGTGTGTGTGG+TGG | - | chr7.3:30661455-30661474 | None:intergenic | 40.0% | |
TTCATTCTTGGGAAGGTTTG+TGG | + | chr7.3:30662549-30662568 | MS.gene27783:CDS | 40.0% | |
TTTATCTCACCACTCCTTGA+TGG | - | chr7.3:30662706-30662725 | None:intergenic | 40.0% | |
TTTCCAACTTTCTCAGCAAC+AGG | - | chr7.3:30661779-30661798 | None:intergenic | 40.0% | |
TTTCCTGTTGCTGAGAAAGT+TGG | + | chr7.3:30661773-30661792 | MS.gene27783:CDS | 40.0% | |
TTTCTCTCAGGAACAACACT+TGG | - | chr7.3:30660852-30660871 | None:intergenic | 40.0% | |
! | ACACCTTTTTCTGTGGAAGA+AGG | - | chr7.3:30660237-30660256 | None:intergenic | 40.0% |
! | TAGCAACATAGTGGAGTAGT+TGG | - | chr7.3:30660424-30660443 | None:intergenic | 40.0% |
! | TGAAGGGTATACTTTGGTTG+AGG | + | chr7.3:30662831-30662850 | MS.gene27783:CDS | 40.0% |
! | TGAGGTTGTTGTTGTTGTTG+TGG | - | chr7.3:30660075-30660094 | None:intergenic | 40.0% |
! | TTGTTGTTGTTGTGGCATGT+TGG | - | chr7.3:30660067-30660086 | None:intergenic | 40.0% |
!! | ACACAAGCTAGTCTTCTTCT+TGG | + | chr7.3:30662796-30662815 | MS.gene27783:CDS | 40.0% |
!! | ACAGTTACTGTTTCTGTTGC+TGG | - | chr7.3:30660595-30660614 | None:intergenic | 40.0% |
!! | TGTGTTGATTGTGGTTGTGA+AGG | - | chr7.3:30661083-30661102 | None:intergenic | 40.0% |
!! | TTTAGAGGTATCTCTTTGGC+TGG | + | chr7.3:30662763-30662782 | MS.gene27783:CDS | 40.0% |
!! | TTTCTGTTGCTGGTTCTGTT+GGG | - | chr7.3:30660585-30660604 | None:intergenic | 40.0% |
!!! | CTTCAACAGTGTGGTTTTAG+AGG | + | chr7.3:30662748-30662767 | MS.gene27783:CDS | 40.0% |
!!! | TGGTTTTGTTCCTCAACAAG+TGG | - | chr7.3:30660507-30660526 | None:intergenic | 40.0% |
AAACCTCAGCTGCAACAAAC+TGG | + | chr7.3:30660676-30660695 | MS.gene27783:CDS | 45.0% | |
ACACTTTGTGGCTCTTGCAA+AGG | + | chr7.3:30661894-30661913 | MS.gene27783:CDS | 45.0% | |
ACGGTTCATGAGTTTCACTG+AGG | - | chr7.3:30660940-30660959 | None:intergenic | 45.0% | |
AGAGAGTGAAGAGAGACATG+TGG | + | chr7.3:30662627-30662646 | MS.gene27783:CDS | 45.0% | |
AGTGGAGTAGTTGGTTGTGA+CGG | - | chr7.3:30660415-30660434 | None:intergenic | 45.0% | |
ATGCAAGGTTTACAATGGCC+TGG | + | chr7.3:30661608-30661627 | MS.gene27783:CDS | 45.0% | |
ATGCAGGTTCATTCTTGGGA+AGG | + | chr7.3:30662542-30662561 | MS.gene27783:CDS | 45.0% | |
ATTGCCAACTCAGCAGAAGT+TGG | - | chr7.3:30661179-30661198 | None:intergenic | 45.0% | |
ATTTGTGGCACACCCCAATT+TGG | - | chr7.3:30661029-30661048 | None:intergenic | 45.0% | |
CATATCCTTGCTTCAAGACC+AGG | + | chr7.3:30661638-30661657 | MS.gene27783:CDS | 45.0% | |
GAACAAGACTTGAGCAATGC+AGG | + | chr7.3:30662526-30662545 | MS.gene27783:CDS | 45.0% | |
GAGCAATGCAGGTTCATTCT+TGG | + | chr7.3:30662537-30662556 | MS.gene27783:CDS | 45.0% | |
GCTGCAACAAACTGGATTGA+TGG | + | chr7.3:30660684-30660703 | MS.gene27783:CDS | 45.0% | |
GTTTGCTTACTGCTTCTGCT+TGG | + | chr7.3:30662890-30662909 | MS.gene27783:CDS | 45.0% | |
TTGGCATGTTCCCTTCTGAA+GGG | + | chr7.3:30662815-30662834 | MS.gene27783:CDS | 45.0% | |
TTTGTGGCTCTTGCAAAGGT+TGG | + | chr7.3:30661898-30661917 | MS.gene27783:intron | 45.0% | |
! | ATGTAGGTTGGCACCTAAAG+TGG | + | chr7.3:30662492-30662511 | MS.gene27783:intron | 45.0% |
! | CACTGGATTAGGTACTTCCA+TGG | + | chr7.3:30661682-30661701 | MS.gene27783:CDS | 45.0% |
! | CAGAAGCTGTTGCTGTTCAT+TGG | + | chr7.3:30661831-30661850 | MS.gene27783:CDS | 45.0% |
! | CCCTTCTGAAGGGTATACTT+TGG | + | chr7.3:30662825-30662844 | MS.gene27783:CDS | 45.0% |
! | CTTTGTGCTGATGTACCGAA+AGG | - | chr7.3:30661359-30661378 | None:intergenic | 45.0% |
! | GCTGCTTGTGCTTTGTTCAA+TGG | + | chr7.3:30659952-30659971 | MS.gene27783:CDS | 45.0% |
! | TTGTTGTTGTGGCATGTTGG+TGG | - | chr7.3:30660064-30660083 | None:intergenic | 45.0% |
!! | AATCCAGTTTGTTGCAGCTG+AGG | - | chr7.3:30660682-30660701 | None:intergenic | 45.0% |
!! | GTTTCTGTTGCTGGTTCTGT+TGG | - | chr7.3:30660586-30660605 | None:intergenic | 45.0% |
!!! | CTGTTGGGTTGGTTTTGAGA+TGG | - | chr7.3:30660570-30660589 | None:intergenic | 45.0% |
!!! | AAAAAAAAATATAAAGTTTT+GGG | - | chr7.3:30662081-30662100 | None:intergenic | 5.0% |
!!! | TAAAAAAAAATATAAAGTTT+TGG | - | chr7.3:30662082-30662101 | None:intergenic | 5.0% |
ACAACAACAACACTAGCCGC+AGG | + | chr7.3:30660261-30660280 | MS.gene27783:CDS | 50.0% | |
ACCACCAACTTCTGCTGAGT+TGG | + | chr7.3:30661172-30661191 | MS.gene27783:intron | 50.0% | |
ATCCTTGCTTCAAGACCAGG+TGG | + | chr7.3:30661641-30661660 | MS.gene27783:CDS | 50.0% | |
CCAGTGAGTCTCACATAAGG+AGG | - | chr7.3:30661668-30661687 | None:intergenic | 50.0% | |
CCTCCTTATGTGAGACTCAC+TGG | + | chr7.3:30661665-30661684 | MS.gene27783:CDS | 50.0% | |
CGTAACGTTCTTGCAGTTGG+TGG | + | chr7.3:30662679-30662698 | MS.gene27783:CDS | 50.0% | |
CTTGGCATGTTCCCTTCTGA+AGG | + | chr7.3:30662814-30662833 | MS.gene27783:CDS | 50.0% | |
GAGTGAAGAGAGACATGTGG+TGG | + | chr7.3:30662630-30662649 | MS.gene27783:CDS | 50.0% | |
TCGCAGCTTTCAACGCCTTT+CGG | + | chr7.3:30661341-30661360 | MS.gene27783:CDS | 50.0% | |
TTGGTTGTGACGGTCACAGT+GGG | - | chr7.3:30660405-30660424 | None:intergenic | 50.0% | |
!! | AACTCAGCAGAAGTTGGTGG+TGG | - | chr7.3:30661173-30661192 | None:intergenic | 50.0% |
!! | TGTTGCTGGTTCTGTTGGGT+TGG | - | chr7.3:30660581-30660600 | None:intergenic | 50.0% |
!! | TTGCAGTTGGTGGACCATCA+AGG | + | chr7.3:30662689-30662708 | MS.gene27783:CDS | 50.0% |
CTCACATAAGGAGGTCCACC+TGG | - | chr7.3:30661659-30661678 | None:intergenic | 55.0% | |
GCCAACTCAGCAGAAGTTGG+TGG | - | chr7.3:30661176-30661195 | None:intergenic | 55.0% | |
GTTGGTTGTGACGGTCACAG+TGG | - | chr7.3:30660406-30660425 | None:intergenic | 55.0% | |
TGGTTGTGACGGTCACAGTG+GGG | - | chr7.3:30660404-30660423 | None:intergenic | 55.0% | |
! | GTTGGTGGACCATCAAGGAG+TGG | + | chr7.3:30662694-30662713 | MS.gene27783:CDS | 55.0% |
!! | GTCCACCTGGTCTTGAAGCA+AGG | - | chr7.3:30661646-30661665 | None:intergenic | 55.0% |
!! | TCAGCAGAAGTTGGTGGTGG+TGG | - | chr7.3:30661170-30661189 | None:intergenic | 55.0% |
!! | GGTGGTGGTGGTGTTGTTGC+AGG | - | chr7.3:30661158-30661177 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 30659949 | 30662957 | 30659949 | ID=MS.gene27783 |
chr7.3 | mRNA | 30659949 | 30662957 | 30659949 | ID=MS.gene27783.t1;Parent=MS.gene27783 |
chr7.3 | exon | 30659949 | 30660996 | 30659949 | ID=MS.gene27783.t1.exon1;Parent=MS.gene27783.t1 |
chr7.3 | CDS | 30659949 | 30660996 | 30659949 | ID=cds.MS.gene27783.t1;Parent=MS.gene27783.t1 |
chr7.3 | exon | 30661288 | 30661915 | 30661288 | ID=MS.gene27783.t1.exon2;Parent=MS.gene27783.t1 |
chr7.3 | CDS | 30661288 | 30661915 | 30661288 | ID=cds.MS.gene27783.t1;Parent=MS.gene27783.t1 |
chr7.3 | exon | 30662498 | 30662957 | 30662498 | ID=MS.gene27783.t1.exon3;Parent=MS.gene27783.t1 |
chr7.3 | CDS | 30662498 | 30662957 | 30662498 | ID=cds.MS.gene27783.t1;Parent=MS.gene27783.t1 |
Gene Sequence |
Protein sequence |