Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27998.t1 | XP_013446720.1 | 86.6 | 395 | 51 | 2 | 1 | 394 | 1 | 394 | 7.80E-146 | 526.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27998.t1 | A0A072TTI8 | 86.6 | 395 | 51 | 2 | 1 | 394 | 1 | 394 | 5.6e-146 | 526.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049239 | MS.gene27998 | 0.801914 | 7.19E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27998.t1 | MTR_8g089695 | 97.468 | 395 | 8 | 2 | 1 | 394 | 1 | 394 | 0.0 | 761 |
| MS.gene27998.t1 | MTR_5g096680 | 32.143 | 224 | 149 | 2 | 173 | 394 | 16 | 238 | 1.37e-42 | 149 |
| MS.gene27998.t1 | MTR_8g072140 | 24.064 | 187 | 141 | 1 | 207 | 393 | 16 | 201 | 1.71e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27998.t1 | AT3G26350 | 50.000 | 224 | 109 | 2 | 172 | 394 | 120 | 341 | 1.54e-62 | 204 |
| MS.gene27998.t1 | AT3G26350 | 50.000 | 224 | 109 | 2 | 172 | 394 | 135 | 356 | 1.78e-62 | 205 |
| MS.gene27998.t1 | AT1G13050 | 47.368 | 190 | 100 | 0 | 205 | 394 | 128 | 317 | 4.31e-52 | 176 |
| MS.gene27998.t1 | AT1G13050 | 51.250 | 160 | 78 | 0 | 235 | 394 | 26 | 185 | 8.06e-51 | 169 |
| MS.gene27998.t1 | AT1G13050 | 51.250 | 160 | 78 | 0 | 235 | 394 | 26 | 185 | 8.06e-51 | 169 |
| MS.gene27998.t1 | AT4G26490 | 40.306 | 196 | 116 | 1 | 199 | 394 | 74 | 268 | 6.20e-48 | 164 |
| MS.gene27998.t1 | AT5G56050 | 38.542 | 192 | 117 | 1 | 203 | 394 | 92 | 282 | 1.09e-41 | 148 |
Find 128 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTTGTGTGTAATATTT+TGG | 0.137370 | 4.4:+11641305 | MS.gene27998:CDS |
| AGGTATTCATATAACCTTTA+TGG | 0.173896 | 4.4:+11641751 | MS.gene27998:CDS |
| AGCCTCTGTGCCTCGTTTAA+TGG | 0.214584 | 4.4:-11641646 | None:intergenic |
| CATCAAGGTATGCAGCATTT+AGG | 0.216824 | 4.4:-11641417 | None:intergenic |
| CAACATATTGAGTAGCAATA+AGG | 0.307187 | 4.4:-11641552 | None:intergenic |
| AGCGGCGTCACGGTGGTATA+AGG | 0.313470 | 4.4:+11641239 | MS.gene27998:CDS |
| CAAGCACCCATCCAAGTTAA+AGG | 0.323626 | 4.4:-11641286 | None:intergenic |
| ATCAAGGTATGCAGCATTTA+GGG | 0.345914 | 4.4:-11641416 | None:intergenic |
| TCATGTGGCACTATTGAAAT+TGG | 0.362266 | 4.4:-11640734 | None:intergenic |
| TTGGTGTGGCACTGTTGGAA+TGG | 0.370173 | 4.4:-11640819 | None:intergenic |
| GTCAATTGCCGCCGAGGCTC+AGG | 0.383069 | 4.4:-11641205 | None:intergenic |
| ATCACCACCTTTAACTTGGA+TGG | 0.405100 | 4.4:+11641279 | MS.gene27998:CDS |
| TGGTGTTGGTGTGGCACTAT+TGG | 0.427105 | 4.4:-11640866 | None:intergenic |
| AAGATTTGCATATATTCATA+TGG | 0.427993 | 4.4:+11641603 | MS.gene27998:CDS |
| TGGTGTGGCACTGTTGGAAT+TGG | 0.428517 | 4.4:-11640776 | None:intergenic |
| TGGTGTGGCACTGTTGGAAT+GGG | 0.428970 | 4.4:-11640818 | None:intergenic |
| TGGCAATGGAAAATGAGGTT+GGG | 0.430712 | 4.4:-11640945 | None:intergenic |
| CAAAACTAGGAACCATCTTA+AGG | 0.434001 | 4.4:+11641731 | MS.gene27998:CDS |
| ATCAGGCGGTGGTGGTATTA+CGG | 0.436529 | 4.4:-11641176 | None:intergenic |
| AATAGTCCTCATAGTGTACT+TGG | 0.437141 | 4.4:+11641351 | MS.gene27998:CDS |
| CGAGGCTCAGGAGGGTGATC+AGG | 0.441754 | 4.4:-11641193 | None:intergenic |
| TGATACTGCAACGGCCATAA+AGG | 0.445239 | 4.4:-11641765 | None:intergenic |
| AACATATTGAGTAGCAATAA+GGG | 0.446329 | 4.4:-11641551 | None:intergenic |
| CTGAAGGGATAATGATGAAA+AGG | 0.449892 | 4.4:+11641803 | MS.gene27998:CDS |
| GGAGGGTGATCAGGCGGTGG+TGG | 0.455552 | 4.4:-11641184 | None:intergenic |
| GCACTGTTGGAATGGGTGGT+TGG | 0.460430 | 4.4:-11640811 | None:intergenic |
| GGGTGTTGGTGTGGCACTGT+TGG | 0.461916 | 4.4:-11640824 | None:intergenic |
| GACCTTCTTGCTCAAGGTGA+AGG | 0.467274 | 4.4:-11641018 | None:intergenic |
| TGTGGCACTGTTGGAATTGG+TGG | 0.470055 | 4.4:-11640773 | None:intergenic |
| CCCCTTCACCTTGAGCAAGA+AGG | 0.470910 | 4.4:+11641016 | MS.gene27998:CDS |
| ACGTCAAAATGTGGAATTTG+TGG | 0.471441 | 4.4:-11641382 | None:intergenic |
| AGCATCGAGATCAGGATCTT+CGG | 0.472754 | 4.4:+11641119 | MS.gene27998:CDS |
| TGAACCCTTGCAGCTGAGAA+AGG | 0.473517 | 4.4:-11641577 | None:intergenic |
| AAATTTACCCTTGACTTGCC+TGG | 0.477026 | 4.4:-11641142 | None:intergenic |
| GTGGTTGGCCACGAGGGTGT+TGG | 0.477135 | 4.4:-11640796 | None:intergenic |
| GCGAGCCTCCACGCGGTGGT+TGG | 0.482523 | 4.4:-11641090 | None:intergenic |
| TGATGAGATACATCTTGTAT+AGG | 0.484187 | 4.4:-11640920 | None:intergenic |
| CACGCGGTGGTTGGCTGATG+CGG | 0.484904 | 4.4:-11641081 | None:intergenic |
| GTTATATGAATACCTTAAGA+TGG | 0.487834 | 4.4:-11641743 | None:intergenic |
| AATTGCCGCCGAGGCTCAGG+AGG | 0.490348 | 4.4:-11641202 | None:intergenic |
| TTATGGCCGTTGCAGTATCA+TGG | 0.493426 | 4.4:+11641768 | MS.gene27998:CDS |
| CGAGATCAGGATCTTCGGCC+AGG | 0.496265 | 4.4:+11641124 | MS.gene27998:CDS |
| TTGAGCCTTTCTCAGCTGCA+AGG | 0.496629 | 4.4:+11641572 | MS.gene27998:CDS |
| TACCACCGTGACGCCGCTCA+TGG | 0.497825 | 4.4:-11641234 | None:intergenic |
| TTGCGTGGAACTTGTAAACT+AGG | 0.506006 | 4.4:-11641052 | None:intergenic |
| TGGAATGGATGGTTGACCAC+GGG | 0.507293 | 4.4:-11640846 | None:intergenic |
| GGCAATGGAAAATGAGGTTG+GGG | 0.508903 | 4.4:-11640944 | None:intergenic |
| TCAGGAGGGTGATCAGGCGG+TGG | 0.509407 | 4.4:-11641187 | None:intergenic |
| GGTGATGACCTTCTTGCTCA+AGG | 0.512097 | 4.4:-11641024 | None:intergenic |
| TTGGAATTGGTGGTTGGCCA+CGG | 0.514076 | 4.4:-11640763 | None:intergenic |
| TGAGCCTTTCTCAGCTGCAA+GGG | 0.517342 | 4.4:+11641573 | MS.gene27998:CDS |
| GTGGCAATGGAAAATGAGGT+TGG | 0.518157 | 4.4:-11640946 | None:intergenic |
| ATAGGTGCTGCTACAGGAAG+AGG | 0.523625 | 4.4:-11640902 | None:intergenic |
| ACCTTCTTGCTCAAGGTGAA+GGG | 0.529065 | 4.4:-11641017 | None:intergenic |
| GCACTGTTGGAATTGGTGGT+TGG | 0.532976 | 4.4:-11640769 | None:intergenic |
| TTCATCATTATCCCTTCAGG+AGG | 0.534065 | 4.4:-11641799 | None:intergenic |
| TCACCACCTTTAACTTGGAT+GGG | 0.536006 | 4.4:+11641280 | MS.gene27998:CDS |
| ACAGAGGCTTGTGAAACAAA+TGG | 0.536130 | 4.4:+11641660 | MS.gene27998:CDS |
| TCTTGTATAGGTGCTGCTAC+AGG | 0.537945 | 4.4:-11640908 | None:intergenic |
| TGTGGCACTGTTGGAATGGG+TGG | 0.538271 | 4.4:-11640815 | None:intergenic |
| CTGATCACCCTCCTGAGCCT+CGG | 0.541882 | 4.4:+11641194 | MS.gene27998:CDS |
| ATCTTCGGCCAGGCAAGTCA+AGG | 0.543811 | 4.4:+11641134 | MS.gene27998:CDS |
| CCGTGACGCCGCTCATGGCG+TGG | 0.545871 | 4.4:-11641229 | None:intergenic |
| GCAATGGAACATGATCTTCA+TGG | 0.547827 | 4.4:-11640970 | None:intergenic |
| TTGGTGTGGCACTATTGGAA+TGG | 0.548808 | 4.4:-11640861 | None:intergenic |
| TGTGGCACTATTGAAATTGG+TGG | 0.549819 | 4.4:-11640731 | None:intergenic |
| TGGCTTATCATAATCATAGG+AGG | 0.553823 | 4.4:+11641325 | MS.gene27998:CDS |
| TGTGGCACTATTGGAATGGA+TGG | 0.554535 | 4.4:-11640857 | None:intergenic |
| TGATCTTCATGGTGTGGCAA+TGG | 0.555410 | 4.4:-11640959 | None:intergenic |
| ATGGTGGCACGCCCTCCTGA+AGG | 0.556235 | 4.4:+11641787 | MS.gene27998:CDS |
| GGCTCAGGAGGGTGATCAGG+CGG | 0.558440 | 4.4:-11641190 | None:intergenic |
| CGTGGTGTCAATTGCCGCCG+AGG | 0.561488 | 4.4:-11641211 | None:intergenic |
| TGGCCACGAGGGTGTTGGTG+TGG | 0.565012 | 4.4:-11640791 | None:intergenic |
| CTGATGCGGTTTCCCTTGCG+TGG | 0.566574 | 4.4:-11641067 | None:intergenic |
| TTCAGGGCAAGATCAAAACT+AGG | 0.568777 | 4.4:+11641718 | MS.gene27998:CDS |
| GGGTGTTGGTGTGGCACTGT+TGG | 0.570541 | 4.4:-11640782 | None:intergenic |
| GTTGGTTTCTCGACGAGACA+TGG | 0.574943 | 4.4:-11640660 | None:intergenic |
| GTGATCATTTATCTGTACTA+CGG | 0.577079 | 4.4:+11641523 | MS.gene27998:CDS |
| TGCATTTGATCTTCATGCTG+AGG | 0.577782 | 4.4:-11640707 | None:intergenic |
| CTATCATGATCTGCACGCAA+TGG | 0.578123 | 4.4:-11640986 | None:intergenic |
| CTGCTACAGGAAGAGGTGGT+TGG | 0.578703 | 4.4:-11640895 | None:intergenic |
| CCTTCTTGCTCAAGGTGAAG+GGG | 0.579075 | 4.4:-11641016 | None:intergenic |
| GGAATGGGTGGTTGGCCACG+AGG | 0.579110 | 4.4:-11640803 | None:intergenic |
| GAATGGGTGGTTGGCCACGA+GGG | 0.583636 | 4.4:-11640802 | None:intergenic |
| AATGCTGCATACCTTGATGT+TGG | 0.584826 | 4.4:+11641421 | MS.gene27998:CDS |
| TGCAGCATTTAGGGTGACAC+TGG | 0.586912 | 4.4:-11641407 | None:intergenic |
| ACACTGGACACGTCAAAATG+TGG | 0.589970 | 4.4:-11641391 | None:intergenic |
| TGGTGGCACGCCCTCCTGAA+GGG | 0.593978 | 4.4:+11641788 | MS.gene27998:CDS |
| TGAGTAGATAACCAACATCA+AGG | 0.598944 | 4.4:-11641432 | None:intergenic |
| TGGTCTAGAAAAGTGAGGGT+TGG | 0.604302 | 4.4:-11640678 | None:intergenic |
| TTGCGCGAGCCTCCACGCGG+TGG | 0.607313 | 4.4:-11641094 | None:intergenic |
| GTGAAACAAATGGAAAGCAA+TGG | 0.608513 | 4.4:+11641670 | MS.gene27998:CDS |
| GTGGTTGGCCACGATGGTGT+TGG | 0.610810 | 4.4:-11640880 | None:intergenic |
| TAGTTTACAAGTTCCACGCA+AGG | 0.611354 | 4.4:+11641054 | MS.gene27998:CDS |
| TTGGAATGGATGGTTGACCA+CGG | 0.614221 | 4.4:-11640847 | None:intergenic |
| TGGCCACGGTGGTGTTCATG+TGG | 0.614695 | 4.4:-11640749 | None:intergenic |
| GGCGGTGGTGGTATTACGGA+CGG | 0.617257 | 4.4:-11641172 | None:intergenic |
| AGTTTACAAGTTCCACGCAA+GGG | 0.618767 | 4.4:+11641055 | MS.gene27998:CDS |
| CCACGCCATGAGCGGCGTCA+CGG | 0.623316 | 4.4:+11641229 | MS.gene27998:CDS |
| GTGCCACCATGATACTGCAA+CGG | 0.626920 | 4.4:-11641774 | None:intergenic |
| TCATCATTATCCCTTCAGGA+GGG | 0.627282 | 4.4:-11641798 | None:intergenic |
| AATTGACACCACGCCATGAG+CGG | 0.628047 | 4.4:+11641221 | MS.gene27998:CDS |
| TGGTGTGGCAATGGAAAATG+AGG | 0.633592 | 4.4:-11640950 | None:intergenic |
| CGCAGTGGTCTAGAAAAGTG+AGG | 0.638468 | 4.4:-11640683 | None:intergenic |
| TGGCCACGATGGTGTTGGTG+TGG | 0.639265 | 4.4:-11640875 | None:intergenic |
| TCTTCGGCCAGGCAAGTCAA+GGG | 0.643851 | 4.4:+11641135 | MS.gene27998:CDS |
| ATCACCCTCCTGAGCCTCGG+CGG | 0.644850 | 4.4:+11641197 | MS.gene27998:CDS |
| TCTTCATGCTGAGGTCGCAG+TGG | 0.651385 | 4.4:-11640698 | None:intergenic |
| ATCAGCCAACCACCGCGTGG+AGG | 0.655044 | 4.4:+11641085 | MS.gene27998:CDS |
| GGAATGGATGGTTGACCACG+GGG | 0.657357 | 4.4:-11640845 | None:intergenic |
| GGTGCTGCTACAGGAAGAGG+TGG | 0.657855 | 4.4:-11640899 | None:intergenic |
| GAAGAGGTGGTTGGCCACGA+TGG | 0.658042 | 4.4:-11640886 | None:intergenic |
| ATTGCCGCCGAGGCTCAGGA+GGG | 0.660785 | 4.4:-11641201 | None:intergenic |
| GCAGTGGTCTAGAAAAGTGA+GGG | 0.671293 | 4.4:-11640682 | None:intergenic |
| GAACTTGTAAACTAGGTGGT+TGG | 0.672035 | 4.4:-11641045 | None:intergenic |
| CGCATCAGCCAACCACCGCG+TGG | 0.672253 | 4.4:+11641082 | MS.gene27998:CDS |
| CGCCATGAGCGGCGTCACGG+TGG | 0.679707 | 4.4:+11641232 | MS.gene27998:CDS |
| GCACCCATCCAAGTTAAAGG+TGG | 0.683889 | 4.4:-11641283 | None:intergenic |
| GGAACATGATCTTCATGGTG+TGG | 0.688691 | 4.4:-11640965 | None:intergenic |
| CGTGGAACTTGTAAACTAGG+TGG | 0.690093 | 4.4:-11641049 | None:intergenic |
| TGGCCGTTGCAGTATCATGG+TGG | 0.690397 | 4.4:+11641771 | MS.gene27998:CDS |
| GTGCCACACCAACACCCTCG+TGG | 0.701119 | 4.4:+11640788 | MS.gene27998:CDS |
| TGCCATTAAACGAGGCACAG+AGG | 0.708427 | 4.4:+11641644 | MS.gene27998:CDS |
| GAATTGGTGGTTGGCCACGG+TGG | 0.710054 | 4.4:-11640760 | None:intergenic |
| AGTTCAGCTGCCATTAAACG+AGG | 0.713395 | 4.4:+11641636 | MS.gene27998:CDS |
| GTGCCACACCAACACCATCG+TGG | 0.746712 | 4.4:+11640872 | MS.gene27998:CDS |
| GAATGGATGGTTGACCACGG+GGG | 0.769674 | 4.4:-11640844 | None:intergenic |
| GTGCCACATGAACACCACCG+TGG | 0.803757 | 4.4:+11640746 | MS.gene27998:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATTTGCATATATTCATA+TGG | + | chr4.4:11641603-11641622 | MS.gene27998:CDS | 20.0% |
| ! | AACATATTGAGTAGCAATAA+GGG | - | chr4.4:11641554-11641573 | None:intergenic | 25.0% |
| ! | AGGTATTCATATAACCTTTA+TGG | + | chr4.4:11641751-11641770 | MS.gene27998:CDS | 25.0% |
| ! | GTTATATGAATACCTTAAGA+TGG | - | chr4.4:11641746-11641765 | None:intergenic | 25.0% |
| !!! | TTTTGGCTTATCATAATCAT+AGG | + | chr4.4:11641322-11641341 | MS.gene27998:CDS | 25.0% |
| AAAAATCACCACCTTTAACT+TGG | + | chr4.4:11641275-11641294 | MS.gene27998:CDS | 30.0% | |
| CAACATATTGAGTAGCAATA+AGG | - | chr4.4:11641555-11641574 | None:intergenic | 30.0% | |
| GTGATCATTTATCTGTACTA+CGG | + | chr4.4:11641523-11641542 | MS.gene27998:CDS | 30.0% | |
| TGATGAGATACATCTTGTAT+AGG | - | chr4.4:11640923-11640942 | None:intergenic | 30.0% | |
| ! | CTTGCTTGTGTGTAATATTT+TGG | + | chr4.4:11641305-11641324 | MS.gene27998:CDS | 30.0% |
| AATAGTCCTCATAGTGTACT+TGG | + | chr4.4:11641351-11641370 | MS.gene27998:CDS | 35.0% | |
| ACGTCAAAATGTGGAATTTG+TGG | - | chr4.4:11641385-11641404 | None:intergenic | 35.0% | |
| ATCAAGGTATGCAGCATTTA+GGG | - | chr4.4:11641419-11641438 | None:intergenic | 35.0% | |
| CAAAACTAGGAACCATCTTA+AGG | + | chr4.4:11641731-11641750 | MS.gene27998:CDS | 35.0% | |
| CTGAAGGGATAATGATGAAA+AGG | + | chr4.4:11641803-11641822 | MS.gene27998:CDS | 35.0% | |
| GAAAAACCAAGTACACTATG+AGG | - | chr4.4:11641360-11641379 | None:intergenic | 35.0% | |
| GTGAAACAAATGGAAAGCAA+TGG | + | chr4.4:11641670-11641689 | MS.gene27998:CDS | 35.0% | |
| TCATGTGGCACTATTGAAAT+TGG | - | chr4.4:11640737-11640756 | None:intergenic | 35.0% | |
| TGAGTAGATAACCAACATCA+AGG | - | chr4.4:11641435-11641454 | None:intergenic | 35.0% | |
| TGGCTTATCATAATCATAGG+AGG | + | chr4.4:11641325-11641344 | MS.gene27998:CDS | 35.0% | |
| ! | CTTTTCATCATTATCCCTTC+AGG | - | chr4.4:11641805-11641824 | None:intergenic | 35.0% |
| ! | GGTGGTGATTTTTGTTCTTT+AGG | - | chr4.4:11641268-11641287 | None:intergenic | 35.0% |
| ! | TCCAAACAAAAAAGTGCATG+TGG | + | chr4.4:11641489-11641508 | MS.gene27998:CDS | 35.0% |
| !!! | TCCACATGCACTTTTTTGTT+TGG | - | chr4.4:11641493-11641512 | None:intergenic | 35.0% |
| AATGCTGCATACCTTGATGT+TGG | + | chr4.4:11641421-11641440 | MS.gene27998:CDS | 40.0% | |
| ACAGAGGCTTGTGAAACAAA+TGG | + | chr4.4:11641660-11641679 | MS.gene27998:CDS | 40.0% | |
| AGTTTACAAGTTCCACGCAA+GGG | + | chr4.4:11641055-11641074 | MS.gene27998:CDS | 40.0% | |
| CATCAAGGTATGCAGCATTT+AGG | - | chr4.4:11641420-11641439 | None:intergenic | 40.0% | |
| GAACTTGTAAACTAGGTGGT+TGG | - | chr4.4:11641048-11641067 | None:intergenic | 40.0% | |
| GCAATGGAACATGATCTTCA+TGG | - | chr4.4:11640973-11640992 | None:intergenic | 40.0% | |
| TAGTTTACAAGTTCCACGCA+AGG | + | chr4.4:11641054-11641073 | MS.gene27998:CDS | 40.0% | |
| TCATCATTATCCCTTCAGGA+GGG | - | chr4.4:11641801-11641820 | None:intergenic | 40.0% | |
| TGCATTTGATCTTCATGCTG+AGG | - | chr4.4:11640710-11640729 | None:intergenic | 40.0% | |
| TGGCAATGGAAAATGAGGTT+GGG | - | chr4.4:11640948-11640967 | None:intergenic | 40.0% | |
| TGTGGCACTATTGAAATTGG+TGG | - | chr4.4:11640734-11640753 | None:intergenic | 40.0% | |
| TTCAGGGCAAGATCAAAACT+AGG | + | chr4.4:11641718-11641737 | MS.gene27998:CDS | 40.0% | |
| TTCATCATTATCCCTTCAGG+AGG | - | chr4.4:11641802-11641821 | None:intergenic | 40.0% | |
| TTGCGTGGAACTTGTAAACT+AGG | - | chr4.4:11641055-11641074 | None:intergenic | 40.0% | |
| !! | AAATTTACCCTTGACTTGCC+TGG | - | chr4.4:11641145-11641164 | None:intergenic | 40.0% |
| !! | ATCACCACCTTTAACTTGGA+TGG | + | chr4.4:11641279-11641298 | MS.gene27998:CDS | 40.0% |
| !! | TCACCACCTTTAACTTGGAT+GGG | + | chr4.4:11641280-11641299 | MS.gene27998:CDS | 40.0% |
| ACACTGGACACGTCAAAATG+TGG | - | chr4.4:11641394-11641413 | None:intergenic | 45.0% | |
| ACCTTCTTGCTCAAGGTGAA+GGG | - | chr4.4:11641020-11641039 | None:intergenic | 45.0% | |
| AGTTCAGCTGCCATTAAACG+AGG | + | chr4.4:11641636-11641655 | MS.gene27998:CDS | 45.0% | |
| CAAGCACCCATCCAAGTTAA+AGG | - | chr4.4:11641289-11641308 | None:intergenic | 45.0% | |
| CGTGGAACTTGTAAACTAGG+TGG | - | chr4.4:11641052-11641071 | None:intergenic | 45.0% | |
| CTATCATGATCTGCACGCAA+TGG | - | chr4.4:11640989-11641008 | None:intergenic | 45.0% | |
| GCAGTGGTCTAGAAAAGTGA+GGG | - | chr4.4:11640685-11640704 | None:intergenic | 45.0% | |
| GGAACATGATCTTCATGGTG+TGG | - | chr4.4:11640968-11640987 | None:intergenic | 45.0% | |
| GGCAATGGAAAATGAGGTTG+GGG | - | chr4.4:11640947-11640966 | None:intergenic | 45.0% | |
| GTGGCAATGGAAAATGAGGT+TGG | - | chr4.4:11640949-11640968 | None:intergenic | 45.0% | |
| TGATACTGCAACGGCCATAA+AGG | - | chr4.4:11641768-11641787 | None:intergenic | 45.0% | |
| TGATCTTCATGGTGTGGCAA+TGG | - | chr4.4:11640962-11640981 | None:intergenic | 45.0% | |
| TGGTCTAGAAAAGTGAGGGT+TGG | - | chr4.4:11640681-11640700 | None:intergenic | 45.0% | |
| TGGTGTGGCAATGGAAAATG+AGG | - | chr4.4:11640953-11640972 | None:intergenic | 45.0% | |
| TGTGGCACTATTGGAATGGA+TGG | - | chr4.4:11640860-11640879 | None:intergenic | 45.0% | |
| TTATGGCCGTTGCAGTATCA+TGG | + | chr4.4:11641768-11641787 | MS.gene27998:CDS | 45.0% | |
| TTGGAATGGATGGTTGACCA+CGG | - | chr4.4:11640850-11640869 | None:intergenic | 45.0% | |
| TTGGTGTGGCACTATTGGAA+TGG | - | chr4.4:11640864-11640883 | None:intergenic | 45.0% | |
| ! | AGCATCGAGATCAGGATCTT+CGG | + | chr4.4:11641119-11641138 | MS.gene27998:CDS | 45.0% |
| ! | ATGGCGTTTTGCTTGAAGTG+AGG | + | chr4.4:11641689-11641708 | MS.gene27998:CDS | 45.0% |
| ! | TGAAGTGAGGGGAGTTTTCA+GGG | + | chr4.4:11641702-11641721 | MS.gene27998:CDS | 45.0% |
| ! | TGGCGTTTTGCTTGAAGTGA+GGG | + | chr4.4:11641690-11641709 | MS.gene27998:CDS | 45.0% |
| ! | TTGAAGTGAGGGGAGTTTTC+AGG | + | chr4.4:11641701-11641720 | MS.gene27998:CDS | 45.0% |
| !! | TCTTGTATAGGTGCTGCTAC+AGG | - | chr4.4:11640911-11640930 | None:intergenic | 45.0% |
| AATTGACACCACGCCATGAG+CGG | + | chr4.4:11641221-11641240 | MS.gene27998:CDS | 50.0% | |
| AGCCTCTGTGCCTCGTTTAA+TGG | - | chr4.4:11641649-11641668 | None:intergenic | 50.0% | |
| CCTTCTTGCTCAAGGTGAAG+GGG | - | chr4.4:11641019-11641038 | None:intergenic | 50.0% | |
| CGCAGTGGTCTAGAAAAGTG+AGG | - | chr4.4:11640686-11640705 | None:intergenic | 50.0% | |
| GACCTTCTTGCTCAAGGTGA+AGG | - | chr4.4:11641021-11641040 | None:intergenic | 50.0% | |
| GCACCCATCCAAGTTAAAGG+TGG | - | chr4.4:11641286-11641305 | None:intergenic | 50.0% | |
| GGTGATGACCTTCTTGCTCA+AGG | - | chr4.4:11641027-11641046 | None:intergenic | 50.0% | |
| GTGCCACCATGATACTGCAA+CGG | - | chr4.4:11641777-11641796 | None:intergenic | 50.0% | |
| TGAACCCTTGCAGCTGAGAA+AGG | - | chr4.4:11641580-11641599 | None:intergenic | 50.0% | |
| TGAGCCTTTCTCAGCTGCAA+GGG | + | chr4.4:11641573-11641592 | MS.gene27998:CDS | 50.0% | |
| TGCCATTAAACGAGGCACAG+AGG | + | chr4.4:11641644-11641663 | MS.gene27998:CDS | 50.0% | |
| TGGAATGGATGGTTGACCAC+GGG | - | chr4.4:11640849-11640868 | None:intergenic | 50.0% | |
| TGGTGTGGCACTGTTGGAAT+GGG | - | chr4.4:11640779-11640798 | None:intergenic | 50.0% | |
| TGGTGTGGCACTGTTGGAAT+TGG | - | chr4.4:11640779-11640798 | None:intergenic | 50.0% | |
| TGTGGCACTGTTGGAATTGG+TGG | - | chr4.4:11640776-11640795 | None:intergenic | 50.0% | |
| TTGAGCCTTTCTCAGCTGCA+AGG | + | chr4.4:11641572-11641591 | MS.gene27998:CDS | 50.0% | |
| TTGGTGTGGCACTGTTGGAA+TGG | - | chr4.4:11640780-11640799 | None:intergenic | 50.0% | |
| ! | ATCAGGCGGTGGTGGTATTA+CGG | - | chr4.4:11641179-11641198 | None:intergenic | 50.0% |
| ! | GCACTGTTGGAATTGGTGGT+TGG | - | chr4.4:11640772-11640791 | None:intergenic | 50.0% |
| ! | GGCGTTTTGCTTGAAGTGAG+GGG | + | chr4.4:11641691-11641710 | MS.gene27998:CDS | 50.0% |
| ! | TGCAGCATTTAGGGTGACAC+TGG | - | chr4.4:11641410-11641429 | None:intergenic | 50.0% |
| ! | TTGGAATTGGTGGTTGGCCA+CGG | - | chr4.4:11640766-11640785 | None:intergenic | 50.0% |
| !! | ATAGGTGCTGCTACAGGAAG+AGG | - | chr4.4:11640905-11640924 | None:intergenic | 50.0% |
| !! | GCGCAAAAAGCATCGAGATC+AGG | + | chr4.4:11641111-11641130 | MS.gene27998:CDS | 50.0% |
| !! | TGGTGTTGGTGTGGCACTAT+TGG | - | chr4.4:11640869-11640888 | None:intergenic | 50.0% |
| ATCTTCGGCCAGGCAAGTCA+AGG | + | chr4.4:11641134-11641153 | MS.gene27998:CDS | 55.0% | |
| CCCCTTCACCTTGAGCAAGA+AGG | + | chr4.4:11641016-11641035 | MS.gene27998:CDS | 55.0% | |
| CTGCTACAGGAAGAGGTGGT+TGG | - | chr4.4:11640898-11640917 | None:intergenic | 55.0% | |
| GAATGGATGGTTGACCACGG+GGG | - | chr4.4:11640847-11640866 | None:intergenic | 55.0% | |
| GCACTGTTGGAATGGGTGGT+TGG | - | chr4.4:11640814-11640833 | None:intergenic | 55.0% | |
| GGAATGGATGGTTGACCACG+GGG | - | chr4.4:11640848-11640867 | None:intergenic | 55.0% | |
| TCTTCATGCTGAGGTCGCAG+TGG | - | chr4.4:11640701-11640720 | None:intergenic | 55.0% | |
| TCTTCGGCCAGGCAAGTCAA+GGG | + | chr4.4:11641135-11641154 | MS.gene27998:CDS | 55.0% | |
| TGGCCGTTGCAGTATCATGG+TGG | + | chr4.4:11641771-11641790 | MS.gene27998:CDS | 55.0% | |
| TGTGGCACTGTTGGAATGGG+TGG | - | chr4.4:11640818-11640837 | None:intergenic | 55.0% | |
| AGCGGCGTCACGGTGGTATA+AGG | + | chr4.4:11641239-11641258 | MS.gene27998:CDS | 60.0% | |
| CGAGATCAGGATCTTCGGCC+AGG | + | chr4.4:11641124-11641143 | MS.gene27998:CDS | 60.0% | |
| CTGATCACCCTCCTGAGCCT+CGG | + | chr4.4:11641194-11641213 | MS.gene27998:CDS | 60.0% | |
| CTGATGCGGTTTCCCTTGCG+TGG | - | chr4.4:11641070-11641089 | None:intergenic | 60.0% | |
| GTGCCACACCAACACCATCG+TGG | + | chr4.4:11640872-11640891 | MS.gene27998:CDS | 60.0% | |
| GTGCCACATGAACACCACCG+TGG | + | chr4.4:11640746-11640765 | MS.gene27998:CDS | 60.0% | |
| TGGCCACGGTGGTGTTCATG+TGG | - | chr4.4:11640752-11640771 | None:intergenic | 60.0% | |
| ! | ATGGTTGACCACGGGGGTGT+TGG | - | chr4.4:11640841-11640860 | None:intergenic | 60.0% |
| ! | GAAGAGGTGGTTGGCCACGA+TGG | - | chr4.4:11640889-11640908 | None:intergenic | 60.0% |
| ! | GAATGGGTGGTTGGCCACGA+GGG | - | chr4.4:11640805-11640824 | None:intergenic | 60.0% |
| ! | GAATTGGTGGTTGGCCACGG+TGG | - | chr4.4:11640763-11640782 | None:intergenic | 60.0% |
| ! | GGCGGTGGTGGTATTACGGA+CGG | - | chr4.4:11641175-11641194 | None:intergenic | 60.0% |
| ! | GTGGTTGGCCACGATGGTGT+TGG | - | chr4.4:11640883-11640902 | None:intergenic | 60.0% |
| ! | TTTTTGCGCGAGCCTCCACG+CGG | - | chr4.4:11641100-11641119 | None:intergenic | 60.0% |
| !! | GGGTGTTGGTGTGGCACTGT+TGG | - | chr4.4:11640785-11640804 | None:intergenic | 60.0% |
| !! | GGTGCTGCTACAGGAAGAGG+TGG | - | chr4.4:11640902-11640921 | None:intergenic | 60.0% |
| !! | TGGCCACGATGGTGTTGGTG+TGG | - | chr4.4:11640878-11640897 | None:intergenic | 60.0% |
| AATTGCCGCCGAGGCTCAGG+AGG | - | chr4.4:11641205-11641224 | None:intergenic | 65.0% | |
| ATCACCCTCCTGAGCCTCGG+CGG | + | chr4.4:11641197-11641216 | MS.gene27998:CDS | 65.0% | |
| ATCAGCCAACCACCGCGTGG+AGG | + | chr4.4:11641085-11641104 | MS.gene27998:CDS | 65.0% | |
| ATGGTGGCACGCCCTCCTGA+AGG | + | chr4.4:11641787-11641806 | MS.gene27998:CDS | 65.0% | |
| ATTGCCGCCGAGGCTCAGGA+GGG | - | chr4.4:11641204-11641223 | None:intergenic | 65.0% | |
| CGAGGCTCAGGAGGGTGATC+AGG | - | chr4.4:11641196-11641215 | None:intergenic | 65.0% | |
| GGCTCAGGAGGGTGATCAGG+CGG | - | chr4.4:11641193-11641212 | None:intergenic | 65.0% | |
| GTCAATTGCCGCCGAGGCTC+AGG | - | chr4.4:11641208-11641227 | None:intergenic | 65.0% | |
| GTGCCACACCAACACCCTCG+TGG | + | chr4.4:11640788-11640807 | MS.gene27998:CDS | 65.0% | |
| TACCACCGTGACGCCGCTCA+TGG | - | chr4.4:11641237-11641256 | None:intergenic | 65.0% | |
| TCAGGAGGGTGATCAGGCGG+TGG | - | chr4.4:11641190-11641209 | None:intergenic | 65.0% | |
| TGGTGGCACGCCCTCCTGAA+GGG | + | chr4.4:11641788-11641807 | MS.gene27998:CDS | 65.0% | |
| ! | CACGCGGTGGTTGGCTGATG+CGG | - | chr4.4:11641084-11641103 | None:intergenic | 65.0% |
| ! | CGTGGTGTCAATTGCCGCCG+AGG | - | chr4.4:11641214-11641233 | None:intergenic | 65.0% |
| ! | GGAATGGGTGGTTGGCCACG+AGG | - | chr4.4:11640806-11640825 | None:intergenic | 65.0% |
| ! | GTGGTTGGCCACGAGGGTGT+TGG | - | chr4.4:11640799-11640818 | None:intergenic | 65.0% |
| !! | TGACCACGGGGGTGTTGGTG+TGG | - | chr4.4:11640836-11640855 | None:intergenic | 65.0% |
| !! | TGGCCACGAGGGTGTTGGTG+TGG | - | chr4.4:11640794-11640813 | None:intergenic | 65.0% |
| CCACGCCATGAGCGGCGTCA+CGG | + | chr4.4:11641229-11641248 | MS.gene27998:CDS | 70.0% | |
| CGCATCAGCCAACCACCGCG+TGG | + | chr4.4:11641082-11641101 | MS.gene27998:CDS | 70.0% | |
| GGAGGGTGATCAGGCGGTGG+TGG | - | chr4.4:11641187-11641206 | None:intergenic | 70.0% | |
| GTGCCACACCAACACCCCCG+TGG | + | chr4.4:11640830-11640849 | MS.gene27998:CDS | 70.0% | |
| CCGTGACGCCGCTCATGGCG+TGG | - | chr4.4:11641232-11641251 | None:intergenic | 75.0% | |
| CGCCATGAGCGGCGTCACGG+TGG | + | chr4.4:11641232-11641251 | MS.gene27998:CDS | 75.0% | |
| GCGAGCCTCCACGCGGTGGT+TGG | - | chr4.4:11641093-11641112 | None:intergenic | 75.0% | |
| TTGCGCGAGCCTCCACGCGG+TGG | - | chr4.4:11641097-11641116 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 11640662 | 11641846 | 11640662 | ID=MS.gene27998 |
| chr4.4 | mRNA | 11640662 | 11641846 | 11640662 | ID=MS.gene27998.t1;Parent=MS.gene27998 |
| chr4.4 | exon | 11640662 | 11641846 | 11640662 | ID=MS.gene27998.t1.exon1;Parent=MS.gene27998.t1 |
| chr4.4 | CDS | 11640662 | 11641846 | 11640662 | ID=cds.MS.gene27998.t1;Parent=MS.gene27998.t1 |
| Gene Sequence |
| Protein sequence |
