AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28068

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28068.t1 MTR_8g090190 99.729 369 1 0 1 369 1 369 0.0 768
MS.gene28068.t1 MTR_3g087140 87.052 363 47 0 1 363 1 363 0.0 665
MS.gene28068.t1 MTR_6g022310 30.704 355 191 10 17 364 121 427 2.39e-37 142
MS.gene28068.t1 MTR_4g130940 30.682 352 192 10 24 365 93 402 7.01e-36 139
MS.gene28068.t1 MTR_4g130940 30.682 352 192 10 24 365 93 402 7.49e-36 139
MS.gene28068.t1 MTR_3g100480 29.462 353 198 10 21 365 582 891 2.34e-35 137
MS.gene28068.t1 MTR_5g030360 30.259 347 186 9 24 364 155 451 5.78e-35 136
MS.gene28068.t1 MTR_6g022290 29.775 356 193 11 17 364 23 329 3.15e-33 130
MS.gene28068.t1 MTR_3g100480 27.441 379 202 10 21 365 582 921 5.49e-33 130
MS.gene28068.t1 MTR_5g066000 28.857 350 199 10 23 365 542 848 2.49e-32 129
MS.gene28068.t1 MTR_1g014680 29.321 324 181 9 24 334 182 470 1.93e-31 126
MS.gene28068.t1 MTR_4g115880 26.744 430 187 14 16 360 192 578 2.24e-31 125
MS.gene28068.t1 MTR_2g071620 29.714 350 196 10 24 365 465 772 2.35e-31 125
MS.gene28068.t1 MTR_6g022300 29.023 348 192 11 24 364 68 367 6.27e-31 124
MS.gene28068.t1 MTR_1g014260 29.223 373 182 15 16 340 176 514 2.30e-30 122
MS.gene28068.t1 MTR_5g032380 28.483 323 192 8 23 338 424 714 9.10e-30 121
MS.gene28068.t1 MTR_8g067060 27.011 348 195 9 24 364 204 499 3.00e-28 116
MS.gene28068.t1 MTR_8g471100 27.011 348 195 9 24 364 213 508 3.48e-28 115
MS.gene28068.t1 MTR_5g430360 30.272 294 151 9 78 364 37 283 5.84e-28 115
MS.gene28068.t1 MTR_2g070390 27.083 336 198 6 23 342 22 326 1.15e-27 114
MS.gene28068.t1 MTR_1g010040 29.747 316 172 8 24 330 108 382 1.62e-27 114
MS.gene28068.t1 MTR_1g010040 29.747 316 172 8 24 330 108 382 1.95e-27 114
MS.gene28068.t1 MTR_3g108660 29.841 315 173 9 24 330 108 382 1.99e-27 114
MS.gene28068.t1 MTR_3g108660 29.841 315 173 9 24 330 108 382 2.01e-27 114
MS.gene28068.t1 MTR_5g086700 27.434 339 191 12 22 347 203 499 3.66e-20 92.8
MS.gene28068.t1 MTR_5g086700 27.434 339 191 12 22 347 203 499 3.84e-20 92.8
MS.gene28068.t1 MTR_8g064910 26.781 351 198 14 24 364 55 356 4.32e-20 91.3
MS.gene28068.t1 MTR_1g041240 26.706 337 192 11 24 347 201 495 7.42e-20 92.0
MS.gene28068.t1 MTR_1g041240 26.706 337 192 11 24 347 202 496 7.92e-20 91.7
MS.gene28068.t1 MTR_1g041240 26.706 337 192 11 24 347 200 494 8.06e-20 91.7
MS.gene28068.t1 MTR_7g088760 33.129 163 87 6 208 363 754 901 3.14e-17 84.0
MS.gene28068.t1 MTR_7g088760 33.129 163 87 6 208 363 771 918 3.34e-17 84.0
MS.gene28068.t1 MTR_2g087710 32.143 168 90 7 208 366 717 869 5.79e-15 77.0
MS.gene28068.t1 MTR_7g106570 33.333 168 87 7 204 363 738 888 1.30e-14 75.9
MS.gene28068.t1 MTR_1g077980 31.638 177 100 6 194 364 751 912 2.50e-14 75.1
MS.gene28068.t1 MTR_1g077980 28.019 207 135 6 19 218 314 513 4.59e-11 64.7
MS.gene28068.t1 MTR_0279s0020 24.642 349 187 14 24 360 6 290 7.72e-14 72.4
MS.gene28068.t1 MTR_0279s0020 24.496 347 186 14 30 364 3 285 2.83e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28068.t1 AT4G39910 88.889 369 37 3 1 365 1 369 0.0 674
MS.gene28068.t1 AT2G22310 88.493 365 39 2 1 364 1 363 0.0 669
MS.gene28068.t1 AT2G22310 87.273 330 39 2 36 364 4 331 0.0 595
MS.gene28068.t1 AT2G22310 87.423 326 38 2 40 364 3 326 0.0 589
MS.gene28068.t1 AT4G24560 27.011 348 207 9 24 365 543 849 8.50e-34 133
MS.gene28068.t1 AT5G57990 28.280 343 197 12 24 360 108 407 2.12e-33 132
MS.gene28068.t1 AT5G65450 30.380 316 180 9 23 330 348 631 9.68e-32 127
MS.gene28068.t1 AT5G65450 30.380 316 180 9 23 330 329 612 1.01e-31 127
MS.gene28068.t1 AT3G14400 29.607 331 200 5 23 342 24 332 1.43e-31 126
MS.gene28068.t1 AT2G24640 27.966 354 205 12 24 369 5 316 1.69e-30 122
MS.gene28068.t1 AT2G24640 27.966 354 205 12 24 369 175 486 3.13e-30 122
MS.gene28068.t1 AT1G17110 28.116 345 198 10 24 360 439 741 6.56e-30 121
MS.gene28068.t1 AT1G17110 28.116 345 198 10 24 360 439 741 6.56e-30 121
MS.gene28068.t1 AT1G17110 28.116 345 198 10 24 360 443 745 8.07e-30 121
MS.gene28068.t1 AT4G31670 27.044 318 196 9 24 334 169 457 1.54e-29 120
MS.gene28068.t1 AT4G17895 29.261 352 187 11 24 364 177 477 1.66e-26 111
MS.gene28068.t1 AT3G49600 27.515 338 195 8 24 352 107 403 7.50e-26 109
MS.gene28068.t1 AT3G49600 27.515 338 195 8 24 352 107 403 7.50e-26 109
MS.gene28068.t1 AT3G49600 27.515 338 195 8 24 352 107 403 8.25e-26 109
MS.gene28068.t1 AT5G46740 29.513 349 196 11 24 364 164 470 1.14e-23 103
MS.gene28068.t1 AT4G30890 27.273 374 218 16 24 363 198 551 3.60e-23 101
MS.gene28068.t1 AT4G30890 27.273 374 218 16 24 363 198 551 3.60e-23 101
MS.gene28068.t1 AT4G30890 27.273 374 218 16 24 363 198 551 3.60e-23 101
MS.gene28068.t1 AT3G11910 27.114 343 195 12 22 351 197 497 4.01e-20 92.8
MS.gene28068.t1 AT3G11910 27.114 343 195 12 22 351 197 497 4.01e-20 92.8
MS.gene28068.t1 AT3G11910 27.114 343 195 12 22 351 196 496 4.16e-20 92.8
MS.gene28068.t1 AT3G11910 27.114 343 195 12 22 351 196 496 4.16e-20 92.8
MS.gene28068.t1 AT5G06600 27.139 339 192 12 22 347 198 494 1.37e-19 91.3
MS.gene28068.t1 AT5G06600 27.139 339 192 12 22 347 197 493 1.41e-19 91.3
MS.gene28068.t1 AT5G06600 27.139 339 192 12 22 347 198 494 1.58e-19 90.9
MS.gene28068.t1 AT5G10790 24.403 377 203 9 16 339 43 390 2.64e-19 89.4
MS.gene28068.t1 AT5G10790 24.403 377 203 9 16 339 172 519 7.58e-19 88.6
MS.gene28068.t1 AT5G46740 32.323 198 112 6 173 364 80 261 1.79e-16 81.3
MS.gene28068.t1 AT2G40930 31.250 160 88 6 208 360 769 913 4.90e-15 77.0
MS.gene28068.t1 AT2G40930 31.250 160 88 6 208 360 769 913 4.90e-15 77.0
MS.gene28068.t1 AT5G22030 31.325 166 93 6 204 363 719 869 1.61e-14 75.5
MS.gene28068.t1 AT5G22030 31.325 166 93 6 204 363 761 911 1.73e-14 75.5
MS.gene28068.t1 AT4G10590 33.735 166 89 6 204 363 744 894 2.32e-14 75.1
MS.gene28068.t1 AT4G10590 33.735 166 89 6 204 363 744 894 2.32e-14 75.1
MS.gene28068.t1 AT4G10590 33.735 166 89 6 204 363 744 894 2.32e-14 75.1
MS.gene28068.t1 AT4G10590 33.735 166 89 6 204 363 744 894 2.32e-14 75.1
MS.gene28068.t1 AT4G10570 33.133 166 90 6 204 363 745 895 3.41e-14 74.7
MS.gene28068.t1 AT1G32850 31.953 169 90 7 203 363 729 880 4.10e-13 71.2

Find 75 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGTACCCAAGTAATTAA+AGG 0.260330 4.4:+10783867 None:intergenic
GTAATTAAAGGCTCTTTCTT+AGG 0.269652 4.4:+10783879 None:intergenic
TCTGAAGGTGTTGGTGTCTC+TGG 0.275197 4.4:+10783942 None:intergenic
TCCGCCGTGCAAACGTTCTT+TGG 0.310357 4.4:-10782664 MS.gene28068:CDS
CCAAAGTAACGTTCTCCTTC+AGG 0.310974 4.4:+10787527 None:intergenic
GAATGAACTTGTCGACATTC+TGG 0.315995 4.4:-10783994 MS.gene28068:CDS
GAACAACTGCTGGAGTATTA+TGG 0.316104 4.4:-10786698 MS.gene28068:CDS
AACGTTCTCCTTCAGGGAAT+TGG 0.317047 4.4:+10787534 None:intergenic
CTCCATCTAGTTACTGTTAC+CGG 0.321318 4.4:+10782576 None:intergenic
CAACCTCTGTACAAATCGTT+TGG 0.322213 4.4:+10785881 None:intergenic
TACTTTGGTCTTGAGAATTT+CGG 0.342794 4.4:-10787512 MS.gene28068:CDS
AAAGAAACCTCCTCACATTC+TGG 0.344711 4.4:-10782935 MS.gene28068:CDS
AGAAAGAGCCTTTAATTACT+TGG 0.355430 4.4:-10783875 MS.gene28068:CDS
TATGGAAATAACAAAACCTT+AGG 0.373430 4.4:-10786680 MS.gene28068:CDS
TTGCAAGCACCTTGTCTCAT+TGG 0.375899 4.4:+10783659 None:intergenic
TTCAAGAATGGTCATGCTAA+TGG 0.388068 4.4:-10783903 MS.gene28068:CDS
TCCATTTCGGGAACAACTGC+TGG 0.393629 4.4:-10786708 MS.gene28068:CDS
AACCTCTGTACAAATCGTTT+GGG 0.398526 4.4:+10785882 None:intergenic
CCTTCAGAAAAGGTTGCAAA+TGG 0.403517 4.4:-10783927 MS.gene28068:CDS
TCCAGCAGTTGTTCCCGAAA+TGG 0.416148 4.4:+10786707 None:intergenic
CACGTGCTGATGGGTGCTGC+TGG 0.422192 4.4:-10787584 None:intergenic
ATGGAAATAACAAAACCTTA+GGG 0.426140 4.4:-10786679 MS.gene28068:CDS
TCTCAAGCGGTTTAAATACA+TGG 0.443043 4.4:-10782905 MS.gene28068:CDS
CCTGAAGGAGAACGTTACTT+TGG 0.445835 4.4:-10787527 MS.gene28068:CDS
GAAAGAGCCTTTAATTACTT+GGG 0.460212 4.4:-10783874 MS.gene28068:CDS
CTTTCGTAGCTATATGCATC+AGG 0.467030 4.4:-10785841 MS.gene28068:intron
GTTTAAATACATGGAACAGC+TGG 0.470114 4.4:-10782896 MS.gene28068:CDS
ACCGAGTGCCTTCTCAAGCT+TGG 0.472929 4.4:+10787559 None:intergenic
TATTGAGTATTCTCTATTTG+CGG 0.483092 4.4:-10782797 MS.gene28068:CDS
CAAAGTAACGTTCTCCTTCA+GGG 0.493408 4.4:+10787528 None:intergenic
GACACCAACACCTTCAGAAA+AGG 0.494615 4.4:-10783937 MS.gene28068:CDS
CTGACATAATGCCCATGGTT+GGG 0.500962 4.4:+10782751 None:intergenic
CATTCTGGAGAAAGAGGCTC+AGG 0.502874 4.4:-10783979 MS.gene28068:CDS
TTCTATGAGAGCATTGGGCC+CGG 0.506913 4.4:-10782595 MS.gene28068:CDS
GTTGCAAATGGGTTCAAGAA+TGG 0.518444 4.4:-10783915 MS.gene28068:CDS
TATTACTCAGCTTCAGCTCA+AGG 0.525905 4.4:+10782836 None:intergenic
GTTGGCAGTGGTCCCAACCA+TGG 0.526315 4.4:-10782763 MS.gene28068:CDS
CTTCAGAAAAGGTTGCAAAT+GGG 0.537604 4.4:-10783926 MS.gene28068:CDS
AGTTCGCAGAAGAAGAAAAC+CGG 0.539192 4.4:-10785915 MS.gene28068:CDS
TAACAAAACCTTAGGGGATG+CGG 0.540455 4.4:-10786672 MS.gene28068:CDS
TATTCAACTAACACCGACCA+TGG 0.551966 4.4:-10782628 MS.gene28068:CDS
TTCTGGTCATTCATCTCAAG+CGG 0.553690 4.4:-10782918 MS.gene28068:CDS
TGTCGACATTCTGGAGAAAG+AGG 0.558202 4.4:-10783985 MS.gene28068:CDS
AACGTTCTTTGGATCACCAC+AGG 0.559651 4.4:-10782653 MS.gene28068:CDS
TTGGCAGTGGTCCCAACCAT+GGG 0.561554 4.4:-10782762 MS.gene28068:CDS
ATTACTCAGCTTCAGCTCAA+GGG 0.562003 4.4:+10782837 None:intergenic
TCCATCTAGTTACTGTTACC+GGG 0.563825 4.4:+10782577 None:intergenic
TGCTGGTTCCAAGCTTGAGA+AGG 0.565161 4.4:-10787567 MS.gene28068:CDS
GTAGTTGTTCATGTTGGCAG+TGG 0.568127 4.4:-10782775 MS.gene28068:CDS
TTTGCGGTAGTTGTTCATGT+TGG 0.570867 4.4:-10782781 MS.gene28068:CDS
CTCCCAAACGATTTGTACAG+AGG 0.577523 4.4:-10785884 MS.gene28068:CDS
TCCAAGCTTGAGAAGGCACT+CGG 0.581992 4.4:-10787560 MS.gene28068:CDS
TTACTCAGCTTCAGCTCAAG+GGG 0.593719 4.4:+10782838 None:intergenic
TTGTGAAAAGCCATAACCAC+TGG 0.595274 4.4:-10782726 MS.gene28068:CDS
TTTAAATACATGGAACAGCT+GGG 0.600093 4.4:-10782895 MS.gene28068:CDS
AATGTGAAACTGTGACAGCT+AGG 0.603275 4.4:-10783638 MS.gene28068:CDS
CATAGAACAAAATGTACCCA+TGG 0.607092 4.4:+10782611 None:intergenic
CTCGGTGACCAATTCCCTGA+AGG 0.615354 4.4:-10787542 MS.gene28068:CDS
GCTGACATAATGCCCATGGT+TGG 0.618993 4.4:+10782750 None:intergenic
CAAGGCTGACATAATGCCCA+TGG 0.620655 4.4:+10782746 None:intergenic
CTCCGCATTCAACGTCTCAG+TGG 0.635411 4.4:+10783539 None:intergenic
CACTGAGACGTTGAATGCGG+AGG 0.643034 4.4:-10783538 MS.gene28068:CDS
TGGAAATAACAAAACCTTAG+GGG 0.647882 4.4:-10786678 MS.gene28068:CDS
ATTCAACTAACACCGACCAT+GGG 0.648378 4.4:-10782627 MS.gene28068:CDS
GTGTTAGTTGAATATTCCTG+TGG 0.649469 4.4:+10782637 None:intergenic
TCGTTTGGGAGCAATGACAC+CGG 0.652677 4.4:+10785896 None:intergenic
TTCCACTGAGACGTTGAATG+CGG 0.653862 4.4:-10783541 MS.gene28068:CDS
ATGTGAAACTGTGACAGCTA+GGG 0.662477 4.4:-10783637 MS.gene28068:CDS
TGATCCAAAGAACGTTTGCA+CGG 0.665690 4.4:+10782660 None:intergenic
GAACAAAATGTACCCATGGT+CGG 0.668984 4.4:+10782615 None:intergenic
TGAATGACCAGAATGTGAGG+AGG 0.681890 4.4:+10782928 None:intergenic
GGTAAGACAACTTCTTGTAG+CGG 0.683615 4.4:+10782872 None:intergenic
AGATGAATGACCAGAATGTG+AGG 0.695994 4.4:+10782925 None:intergenic
GAATACTCACCAATGAGACA+AGG 0.708354 4.4:-10783668 MS.gene28068:CDS
TCCAAAGAACGTTTGCACGG+CGG 0.730946 4.4:+10782663 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATGACAAAAAAAT+TGG + chr4.4:10786339-10786358 None:intergenic 10.0%
!! AAATAAAAAATAAGAAAATC+TGG + chr4.4:10783860-10783879 None:intergenic 10.0%
!! ATATGTTATTAAAGAAAATA+TGG + chr4.4:10783833-10783852 None:intergenic 10.0%
!! ATTAACTATTATTATATATC+CGG - chr4.4:10785657-10785676 MS.gene28068:intron 10.0%
!!! ATAATTATTTTTAGATAACA+GGG - chr4.4:10783101-10783120 MS.gene28068:intron 10.0%
!!! TATAATTATTTTTAGATAAC+AGG - chr4.4:10783100-10783119 MS.gene28068:intron 10.0%
!! AAATTCAGAAAAGAAAAAAA+TGG + chr4.4:10782815-10782834 None:intergenic 15.0%
!! ATATAAATAAGACATTAGTT+TGG - chr4.4:10784444-10784463 MS.gene28068:intron 15.0%
!! GAAAAGAAAAAAAAACTAAT+TGG + chr4.4:10785793-10785812 None:intergenic 15.0%
!! TAATACTTAGAATCATAATT+AGG + chr4.4:10783325-10783344 None:intergenic 15.0%
!! TAATTGTTGAATAATCTTTA+AGG - chr4.4:10782869-10782888 MS.gene28068:CDS 15.0%
!! TTAATAATGTAAAGTGATAA+GGG + chr4.4:10785722-10785741 None:intergenic 15.0%
!! TTAATTCACAAAAACATTTA+AGG - chr4.4:10784775-10784794 MS.gene28068:intron 15.0%
!! TTAGATTTATATCTATATTG+TGG - chr4.4:10786435-10786454 MS.gene28068:intron 15.0%
!!! TTGAATATCATGTATATTTT+TGG - chr4.4:10786967-10786986 MS.gene28068:intron 15.0%
!!! TTTTTAACTTAAGCATTTAA+AGG + chr4.4:10785056-10785075 None:intergenic 15.0%
!! AAAAAATAAGAAAATCTGGT+AGG + chr4.4:10783856-10783875 None:intergenic 20.0%
!! ATAAACATTTGCAATATCAT+TGG - chr4.4:10785327-10785346 MS.gene28068:intron 20.0%
!! ATAAATTGTGAACTTTGTAA+TGG - chr4.4:10786389-10786408 MS.gene28068:intron 20.0%
!! ATGAAAAAGTAGTTATAAGT+GGG - chr4.4:10785556-10785575 MS.gene28068:intron 20.0%
!! CCTGAAAAATTATTTATAAG+CGG - chr4.4:10784857-10784876 MS.gene28068:intron 20.0%
!! CTGAAAAATTATTTATAAGC+GGG - chr4.4:10784858-10784877 MS.gene28068:intron 20.0%
!! CTTAATAATGTAAAGTGATA+AGG + chr4.4:10785723-10785742 None:intergenic 20.0%
!! GAAATAAATATGTTGAATTC+AGG + chr4.4:10784208-10784227 None:intergenic 20.0%
!! TAAAAACTAGACAAAATATG+AGG + chr4.4:10786072-10786091 None:intergenic 20.0%
!! TAAGTATTAAGTTTGAAGAT+GGG - chr4.4:10783336-10783355 MS.gene28068:intron 20.0%
!! TATTTCATCATAGAATGAAA+AGG + chr4.4:10785820-10785839 None:intergenic 20.0%
!!! AAACTCTTCAAAAATTTGTT+TGG + chr4.4:10782850-10782869 None:intergenic 20.0%
!!! ATTTTTGTTATTTACCTGTT+TGG - chr4.4:10782892-10782911 MS.gene28068:CDS 20.0%
!!! CGCTTATAAATAATTTTTCA+GGG + chr4.4:10784859-10784878 None:intergenic 20.0%
!!! GCTTATAAATAATTTTTCAG+GGG + chr4.4:10784858-10784877 None:intergenic 20.0%
!!! GTTTGTTTGTTATATTTTTG+TGG - chr4.4:10783358-10783377 MS.gene28068:intron 20.0%
!!! TCATATCTAAAGTCTTAATT+TGG + chr4.4:10785632-10785651 None:intergenic 20.0%
!!! TTATACAAATGATTTGTTTC+AGG + chr4.4:10784123-10784142 None:intergenic 20.0%
!!! TTCAACATATTTATTTCTGT+TGG - chr4.4:10784211-10784230 MS.gene28068:intron 20.0%
! AAAAATTATTTATAAGCGGG+AGG - chr4.4:10784861-10784880 MS.gene28068:intron 25.0%
! AAATGTTTATAATGACACAG+TGG + chr4.4:10785317-10785336 None:intergenic 25.0%
! AACACAAATTTATAACCTGA+AGG - chr4.4:10785489-10785508 MS.gene28068:intron 25.0%
! AACTATTATTATATATCCGG+TGG - chr4.4:10785660-10785679 MS.gene28068:intron 25.0%
! AATAATTCTGTAACTGATGT+TGG - chr4.4:10785836-10785855 MS.gene28068:intron 25.0%
! ACACAAACAATAACAGAAAA+AGG + chr4.4:10783883-10783902 None:intergenic 25.0%
! ACACAAATTTATAACCTGAA+GGG - chr4.4:10785490-10785509 MS.gene28068:intron 25.0%
! ACAGAATAAAAAAGTAACAC+TGG + chr4.4:10784696-10784715 None:intergenic 25.0%
! AGAGGGAAATAAAATAAATG+TGG - chr4.4:10786922-10786941 MS.gene28068:intron 25.0%
! ATAATTCTGTAACTGATGTT+GGG - chr4.4:10785837-10785856 MS.gene28068:intron 25.0%
! ATGGAAAAACAAACATGTTA+CGG + chr4.4:10787027-10787046 None:intergenic 25.0%
! ATGGAAATAACAAAACCTTA+GGG - chr4.4:10783478-10783497 MS.gene28068:intron 25.0%
! CAAGGAAATGTAAATAAACA+TGG + chr4.4:10784546-10784565 None:intergenic 25.0%
! CAGTTAAAAGTAGAAAACAA+TGG + chr4.4:10786901-10786920 None:intergenic 25.0%
! CATGAAAAAGTAGTTATAAG+TGG - chr4.4:10785555-10785574 MS.gene28068:intron 25.0%
! CTAAGTATTAAGTTTGAAGA+TGG - chr4.4:10783335-10783354 MS.gene28068:intron 25.0%
! GAACTTATTCTTAACACTTA+TGG + chr4.4:10784353-10784372 None:intergenic 25.0%
! TAAAAAGTTCAAGAATTCGT+GGG + chr4.4:10786141-10786160 None:intergenic 25.0%
! TAATACAACAATGTTACTGT+CGG - chr4.4:10786094-10786113 MS.gene28068:intron 25.0%
! TAGAACTTACATTCAATTCT+TGG + chr4.4:10785275-10785294 None:intergenic 25.0%
! TATGGAAATAACAAAACCTT+AGG - chr4.4:10783477-10783496 MS.gene28068:intron 25.0%
! TATTGAGTATTCTCTATTTG+CGG - chr4.4:10787360-10787379 MS.gene28068:intron 25.0%
! TCAAATAATCAAATCCAAAC+AGG + chr4.4:10782909-10782928 None:intergenic 25.0%
! TGAACAGATATCTGAAAATT+TGG + chr4.4:10786836-10786855 None:intergenic 25.0%
! TTAAGTGATTGTCATATAAG+CGG + chr4.4:10783280-10783299 None:intergenic 25.0%
! TTGCAAATCACAAAAAACAA+CGG + chr4.4:10783238-10783257 None:intergenic 25.0%
!! ACAAGTTGAGAATAAAAGAT+AGG - chr4.4:10783934-10783953 MS.gene28068:CDS 25.0%
!! AGATATAGTTGATACTTGAT+AGG + chr4.4:10784148-10784167 None:intergenic 25.0%
!! AGGTATATGCTTTTATATTG+TGG - chr4.4:10786668-10786687 MS.gene28068:CDS 25.0%
!! ATAAGACATTAGTTTGGATA+TGG - chr4.4:10784450-10784469 MS.gene28068:intron 25.0%
!! ATCTAAAGTCTTAATTTGGT+CGG + chr4.4:10785628-10785647 None:intergenic 25.0%
!! CAAGTTGAGAATAAAAGATA+GGG - chr4.4:10783935-10783954 MS.gene28068:CDS 25.0%
!! CCGCTTATAAATAATTTTTC+AGG + chr4.4:10784860-10784879 None:intergenic 25.0%
!! TAAGACATTAGTTTGGATAT+GGG - chr4.4:10784451-10784470 MS.gene28068:intron 25.0%
!! TATACTTTTGTGTTCCATTT+CGG - chr4.4:10783436-10783455 MS.gene28068:intron 25.0%
!! TCAAATATGAAAAAGCATAG+AGG + chr4.4:10783598-10783617 None:intergenic 25.0%
!! TTTGCTTGTTGAAAATGAAA+AGG + chr4.4:10787004-10787023 None:intergenic 25.0%
!!! ATATTTTTGTGGAGATTTCT+GGG - chr4.4:10783369-10783388 MS.gene28068:intron 25.0%
!!! ATGTTTGTTTTTCCATTGAT+TGG - chr4.4:10787031-10787050 MS.gene28068:intron 25.0%
!!! ATTTTAGTAGTTTCCTGTAA+AGG - chr4.4:10786866-10786885 MS.gene28068:intron 25.0%
!!! CATTGTTTTCTACTTTTAAC+TGG - chr4.4:10786899-10786918 MS.gene28068:intron 25.0%
!!! TATAGCGATTAGTCTAAATT+CGG + chr4.4:10783171-10783190 None:intergenic 25.0%
!!! TATATTTTTGTGGAGATTTC+TGG - chr4.4:10783368-10783387 MS.gene28068:intron 25.0%
!!! TGGTTTTAAAACCAAAACTA+AGG + chr4.4:10783813-10783832 None:intergenic 25.0%
!!! TGTTACTTTTTTATTCTGTC+AGG - chr4.4:10784697-10784716 MS.gene28068:intron 25.0%
!!! TTATAAATTTGTGTTGACTC+TGG + chr4.4:10785484-10785503 None:intergenic 25.0%
!!! TTGTTTTTCTCAATTGCAAA+GGG - chr4.4:10785176-10785195 MS.gene28068:intron 25.0%
!!! TTTTGTTGTTGCAACAAATT+TGG - chr4.4:10786359-10786378 MS.gene28068:intron 25.0%
AAAACCACATGCCTTAAATT+TGG + chr4.4:10784728-10784747 None:intergenic 30.0%
ACAATAGAGTTTACTTTGTG+AGG - chr4.4:10784089-10784108 MS.gene28068:intron 30.0%
AGAAAGAGCCTTTAATTACT+TGG - chr4.4:10786282-10786301 MS.gene28068:intron 30.0%
AGAGATGCTGTTATCTATAT+TGG - chr4.4:10784604-10784623 MS.gene28068:intron 30.0%
ATTAAGCCTGCTAATAGATT+TGG - chr4.4:10785737-10785756 MS.gene28068:intron 30.0%
ATTTAGACTAATCGCTATAG+TGG - chr4.4:10783172-10783191 MS.gene28068:intron 30.0%
CAAAAAATAACCAGTGGTTA+TGG + chr4.4:10787444-10787463 None:intergenic 30.0%
CACAAAGTAAACTCTATTGT+TGG + chr4.4:10784089-10784108 None:intergenic 30.0%
CAGGTAATCAATTTGTAGTT+TGG - chr4.4:10783546-10783565 MS.gene28068:CDS 30.0%
GAAAGAGCCTTTAATTACTT+GGG - chr4.4:10786283-10786302 MS.gene28068:intron 30.0%
GAAATACGATAATGCAGAAA+AGG - chr4.4:10785244-10785263 MS.gene28068:intron 30.0%
GATATTTATTTGTGATGCAG+TGG - chr4.4:10785143-10785162 MS.gene28068:intron 30.0%
GTAAAAAGTTCAAGAATTCG+TGG + chr4.4:10786142-10786161 None:intergenic 30.0%
GTAATTAAAGGCTCTTTCTT+AGG + chr4.4:10786281-10786300 None:intergenic 30.0%
TAATGTAAAGTGATAAGGGA+TGG + chr4.4:10785718-10785737 None:intergenic 30.0%
TATGCTACAGTGAAAATTCA+TGG + chr4.4:10785919-10785938 None:intergenic 30.0%
TGAATAACAATTCGATGTAC+AGG + chr4.4:10784375-10784394 None:intergenic 30.0%
TGCATTGTCTTCACTAATTT+CGG - chr4.4:10783650-10783669 MS.gene28068:CDS 30.0%
TGGAAATAACAAAACCTTAG+GGG - chr4.4:10783479-10783498 MS.gene28068:intron 30.0%
TGTTATTGTTTGTGTGTTGA+AGG - chr4.4:10783888-10783907 MS.gene28068:CDS 30.0%
TTGTGTACCCAAGTAATTAA+AGG + chr4.4:10786293-10786312 None:intergenic 30.0%
TTTAAATACATGGAACAGCT+GGG - chr4.4:10787262-10787281 MS.gene28068:intron 30.0%
! ATACTTTTGTGTTCCATTTC+GGG - chr4.4:10783437-10783456 MS.gene28068:intron 30.0%
! ATTAAGTTGTTCTTCCAAAC+AGG - chr4.4:10783299-10783318 MS.gene28068:intron 30.0%
! CACTACGATTTAGAATGAAT+CGG + chr4.4:10782739-10782758 None:intergenic 30.0%
! TGGAAATTTTGTGCATTACA+TGG - chr4.4:10783566-10783585 MS.gene28068:CDS 30.0%
! TTATTGTAACAGCGTTTTAC+AGG - chr4.4:10782677-10782696 MS.gene28068:CDS 30.0%
!! AAATTTGTGTTGACTCTTGT+GGG + chr4.4:10785480-10785499 None:intergenic 30.0%
!! ACTTCATTTGTTTTCTGAAC+GGG - chr4.4:10787055-10787074 MS.gene28068:intron 30.0%
!! ATTTTGTTCTATGAGAGCAT+TGG - chr4.4:10787556-10787575 MS.gene28068:CDS 30.0%
!! CACTTCATTTGTTTTCTGAA+CGG - chr4.4:10787054-10787073 MS.gene28068:intron 30.0%
!! CTTGTTTTTCTCAATTGCAA+AGG - chr4.4:10785175-10785194 MS.gene28068:intron 30.0%
!! GTTTTTGCTATCCTTAGTTT+TGG - chr4.4:10783799-10783818 MS.gene28068:intron 30.0%
!! TAAATTTGTGTTGACTCTTG+TGG + chr4.4:10785481-10785500 None:intergenic 30.0%
!! TACTTTGGTCTTGAGAATTT+CGG - chr4.4:10782645-10782664 MS.gene28068:CDS 30.0%
!! TGAAAGCAAATTCTAAGATG+AGG - chr4.4:10785030-10785049 MS.gene28068:intron 30.0%
!! TTTCTACTTTTAACTGGAGA+GGG - chr4.4:10786905-10786924 MS.gene28068:intron 30.0%
!! TTTTCTACTTTTAACTGGAG+AGG - chr4.4:10786904-10786923 MS.gene28068:intron 30.0%
!!! ACCTTACAAGTTAGTTTTGT+AGG - chr4.4:10784892-10784911 MS.gene28068:intron 30.0%
!!! ACTTTTTTATTCTGTCAGGT+TGG - chr4.4:10784701-10784720 MS.gene28068:intron 30.0%
!!! CCTTACAAGTTAGTTTTGTA+GGG - chr4.4:10784893-10784912 MS.gene28068:intron 30.0%
!!! TTTTGTTCTATGAGAGCATT+GGG - chr4.4:10787557-10787576 MS.gene28068:CDS 30.0%
AAAAGCTTGTAACAATTCCG+AGG + chr4.4:10784754-10784773 None:intergenic 35.0%
AAAGCTTGTAACAATTCCGA+GGG + chr4.4:10784753-10784772 None:intergenic 35.0%
AACCTCTGTACAAATCGTTT+GGG + chr4.4:10784278-10784297 None:intergenic 35.0%
AAGTTCTACCTGCAAAACAA+AGG - chr4.4:10785287-10785306 MS.gene28068:intron 35.0%
ACATTCTTCACCTTACAAGT+TGG - chr4.4:10785581-10785600 MS.gene28068:intron 35.0%
AGATAACAGCATCTCTAACT+AGG + chr4.4:10784600-10784619 None:intergenic 35.0%
ATATATGGAAATCCACCACT+TGG - chr4.4:10785358-10785377 MS.gene28068:intron 35.0%
ATGCTACTGCTTGTTTAACA+TGG - chr4.4:10786778-10786797 MS.gene28068:intron 35.0%
ATGGCGTAAAAAACCTTTAC+AGG + chr4.4:10786882-10786901 None:intergenic 35.0%
ATTGTCTTCACTAATTTCGG+CGG - chr4.4:10783653-10783672 MS.gene28068:CDS 35.0%
ATTTACCAATCTAGTGACCA+AGG - chr4.4:10787146-10787165 MS.gene28068:intron 35.0%
CACCAATCCAAAATTTGAGA+TGG - chr4.4:10784924-10784943 MS.gene28068:intron 35.0%
CATAGAACAAAATGTACCCA+TGG + chr4.4:10787549-10787568 None:intergenic 35.0%
CCATACAAAACCAACTTGTA+AGG + chr4.4:10785594-10785613 None:intergenic 35.0%
CGTCATCAAAAAATAACCAG+TGG + chr4.4:10787450-10787469 None:intergenic 35.0%
CTATATTGGATGTTTCCAGA+TGG - chr4.4:10784618-10784637 MS.gene28068:intron 35.0%
CTTCAGAAAAGGTTGCAAAT+GGG - chr4.4:10786231-10786250 MS.gene28068:intron 35.0%
CTTCTTCCTCTTCTTTCATT+TGG - chr4.4:10783734-10783753 MS.gene28068:intron 35.0%
CTTGCATCTTTGCATAATCA+TGG + chr4.4:10784512-10784531 None:intergenic 35.0%
GAATCATAATTAGGCCTGTT+TGG + chr4.4:10783316-10783335 None:intergenic 35.0%
GACAAAAAAATTGGCAAAGC+AGG + chr4.4:10786330-10786349 None:intergenic 35.0%
GATTATGCAAAGATGCAAGT+AGG - chr4.4:10784513-10784532 MS.gene28068:intron 35.0%
GCATATCACTGTTATACTGA+TGG - chr4.4:10785762-10785781 MS.gene28068:intron 35.0%
GGAAAAGATTATGATTCCAC+CGG + chr4.4:10785679-10785698 None:intergenic 35.0%
GTCTCACATTTGATGTGATA+TGG - chr4.4:10784832-10784851 MS.gene28068:intron 35.0%
GTGTTAGTTGAATATTCCTG+TGG + chr4.4:10787523-10787542 None:intergenic 35.0%
GTTTAAATACATGGAACAGC+TGG - chr4.4:10787261-10787280 MS.gene28068:intron 35.0%
TAAATGGGCATGAAAAACAG+AGG + chr4.4:10787131-10787150 None:intergenic 35.0%
TCATTGGACAGCACAATATA+TGG - chr4.4:10785343-10785362 MS.gene28068:intron 35.0%
TCTCAAGCGGTTTAAATACA+TGG - chr4.4:10787252-10787271 MS.gene28068:intron 35.0%
TGAAGACCAAATGAAAGAAG+AGG + chr4.4:10783743-10783762 None:intergenic 35.0%
TGGTCACTAGATTGGTAAAT+GGG + chr4.4:10787146-10787165 None:intergenic 35.0%
TGTTGTTGCAACAAATTTGG+AGG - chr4.4:10786362-10786381 MS.gene28068:intron 35.0%
TTCAAGAATGGTCATGCTAA+TGG - chr4.4:10786254-10786273 MS.gene28068:intron 35.0%
TTCCAGATGCTAGATAATCA+TGG + chr4.4:10784013-10784032 None:intergenic 35.0%
TTGGGTACACAAAAACTTTC+AGG - chr4.4:10786301-10786320 MS.gene28068:intron 35.0%
TTGGTCACTAGATTGGTAAA+TGG + chr4.4:10787147-10787166 None:intergenic 35.0%
TTTCAGCTTCAACATGTGTT+GGG + chr4.4:10785015-10785034 None:intergenic 35.0%
! ACAAATGAAGTGCCAATCAA+TGG + chr4.4:10787046-10787065 None:intergenic 35.0%
! CACCATCTCAAATTTTGGAT+TGG + chr4.4:10784929-10784948 None:intergenic 35.0%
! CCCTACAAAACTAACTTGTA+AGG + chr4.4:10784896-10784915 None:intergenic 35.0%
! CGATTTAGAATGAATCGGAT+TGG + chr4.4:10782734-10782753 None:intergenic 35.0%
! TCTGACACCATCTCAAATTT+TGG + chr4.4:10784934-10784953 None:intergenic 35.0%
!! AAATTTGTGTTGACTCTGGT+GGG + chr4.4:10785531-10785550 None:intergenic 35.0%
!! ACCTGAAGGGTATTTATAAG+TGG - chr4.4:10785503-10785522 MS.gene28068:intron 35.0%
!! ATTTCGGTTGGTAGATCATT+AGG - chr4.4:10784666-10784685 MS.gene28068:intron 35.0%
!! CCTGAAGGGTATTTATAAGT+GGG - chr4.4:10785504-10785523 MS.gene28068:intron 35.0%
!! TAAATTTGTGTTGACTCTGG+TGG + chr4.4:10785532-10785551 None:intergenic 35.0%
!!! CCTTACAAGTTGGTTTTGTA+TGG - chr4.4:10785591-10785610 MS.gene28068:intron 35.0%
AAAATTACTACCCGCAGGAT+TGG + chr4.4:10785204-10785223 None:intergenic 40.0%
AAAGAAACCTCCTCACATTC+TGG - chr4.4:10787222-10787241 MS.gene28068:intron 40.0%
AAAGCTGAAAGTTCGAAGCA+AGG + chr4.4:10784564-10784583 None:intergenic 40.0%
AAGTCCTTGTGAGACTGTTT+GGG - chr4.4:10782945-10782964 MS.gene28068:CDS 40.0%
AATGTGAAACTGTGACAGCT+AGG - chr4.4:10786519-10786538 MS.gene28068:intron 40.0%
ACGGTCTAGATGTTCATTCA+TGG - chr4.4:10785421-10785440 MS.gene28068:intron 40.0%
AGAAGAGGAAGAAGAATGCA+AGG + chr4.4:10783728-10783747 None:intergenic 40.0%
AGATGAATGACCAGAATGTG+AGG + chr4.4:10787235-10787254 None:intergenic 40.0%
AGTTCGCAGAAGAAGAAAAC+CGG - chr4.4:10784242-10784261 MS.gene28068:intron 40.0%
ATAACAGGGTTGCCAAATAG+TGG - chr4.4:10783115-10783134 MS.gene28068:intron 40.0%
ATGCAGCCAAATCTATTAGC+AGG + chr4.4:10785746-10785765 None:intergenic 40.0%
ATGTGAAACTGTGACAGCTA+GGG - chr4.4:10786520-10786539 MS.gene28068:intron 40.0%
ATTACTCAGCTTCAGCTCAA+GGG + chr4.4:10787323-10787342 None:intergenic 40.0%
ATTCAACTAACACCGACCAT+GGG - chr4.4:10787530-10787549 MS.gene28068:CDS 40.0%
CAAAGTAACGTTCTCCTTCA+GGG + chr4.4:10782632-10782651 None:intergenic 40.0%
CAACCTCTGTACAAATCGTT+TGG + chr4.4:10784279-10784298 None:intergenic 40.0%
CACCATGATTATCTAGCATC+TGG - chr4.4:10784008-10784027 MS.gene28068:CDS 40.0%
CCAAAAGAAAGTTTGCACCT+TGG + chr4.4:10787166-10787185 None:intergenic 40.0%
CCCACTTATAAATACCCTTC+AGG + chr4.4:10785507-10785526 None:intergenic 40.0%
CCTTCAGAAAAGGTTGCAAA+TGG - chr4.4:10786230-10786249 MS.gene28068:intron 40.0%
CGGTCTAGATGTTCATTCAT+GGG - chr4.4:10785422-10785441 MS.gene28068:intron 40.0%
CTGACAACAAGTATTTCGGT+TGG - chr4.4:10784654-10784673 MS.gene28068:intron 40.0%
CTTTCAGCTTCAACATGTGT+TGG + chr4.4:10785016-10785035 None:intergenic 40.0%
CTTTCGTAGCTATATGCATC+AGG - chr4.4:10784316-10784335 MS.gene28068:intron 40.0%
GAACAAAATGTACCCATGGT+CGG + chr4.4:10787545-10787564 None:intergenic 40.0%
GAATACTCACCAATGAGACA+AGG - chr4.4:10786489-10786508 MS.gene28068:intron 40.0%
GAATGAACTTGTCGACATTC+TGG - chr4.4:10786163-10786182 MS.gene28068:intron 40.0%
GAGCCTGACAACAAGTATTT+CGG - chr4.4:10784650-10784669 MS.gene28068:intron 40.0%
GGTAAGACAACTTCTTGTAG+CGG + chr4.4:10787288-10787307 None:intergenic 40.0%
GTGTTGAAGGAGAATTTGTC+AGG - chr4.4:10783901-10783920 MS.gene28068:CDS 40.0%
TAACAAAACCTTAGGGGATG+CGG - chr4.4:10783485-10783504 MS.gene28068:intron 40.0%
TAAGTCCTTGTGAGACTGTT+TGG - chr4.4:10782944-10782963 MS.gene28068:CDS 40.0%
TAATCATGGTGCAGCTTCTA+TGG + chr4.4:10783999-10784018 None:intergenic 40.0%
TACTTGGTTTCTCGATTGGT+TGG - chr4.4:10786701-10786720 MS.gene28068:CDS 40.0%
TATTACTCAGCTTCAGCTCA+AGG + chr4.4:10787324-10787343 None:intergenic 40.0%
TATTCAACTAACACCGACCA+TGG - chr4.4:10787529-10787548 MS.gene28068:CDS 40.0%
TGATCCAAAGAACGTTTGCA+CGG + chr4.4:10787500-10787519 None:intergenic 40.0%
TTCTGGTCATTCATCTCAAG+CGG - chr4.4:10787239-10787258 MS.gene28068:intron 40.0%
TTGAATCCACTCAGGTCAAT+TGG - chr4.4:10784984-10785003 MS.gene28068:intron 40.0%
TTGTGAAAAGCCATAACCAC+TGG - chr4.4:10787431-10787450 MS.gene28068:intron 40.0%
TTTATCTGAATGCCTCACAG+TGG - chr4.4:10783777-10783796 MS.gene28068:intron 40.0%
TTTGCGGTAGTTGTTCATGT+TGG - chr4.4:10787376-10787395 MS.gene28068:intron 40.0%
! AAAAGTATAGTGCCTGCAGA+AGG + chr4.4:10783425-10783444 None:intergenic 40.0%
! ACTTGGTTTCTCGATTGGTT+GGG - chr4.4:10786702-10786721 MS.gene28068:CDS 40.0%
! AGTGGTTATGGCTTTTCACA+AGG + chr4.4:10787432-10787451 None:intergenic 40.0%
! ATCCTGCGGGTAGTAATTTT+TGG - chr4.4:10785204-10785223 MS.gene28068:intron 40.0%
! CCAAGGTGCAAACTTTCTTT+TGG - chr4.4:10787163-10787182 MS.gene28068:intron 40.0%
! CCATTTGCAACCTTTTCTGA+AGG + chr4.4:10786233-10786252 None:intergenic 40.0%
! CTGTTACTTGGTTTCTCGAT+TGG - chr4.4:10786697-10786716 MS.gene28068:CDS 40.0%
! GAACAACTGCTGGAGTATTA+TGG - chr4.4:10783459-10783478 MS.gene28068:intron 40.0%
! GTTGCAAATGGGTTCAAGAA+TGG - chr4.4:10786242-10786261 MS.gene28068:intron 40.0%
! GTTTTCTGAACGGGATTTCT+TGG - chr4.4:10787064-10787083 MS.gene28068:intron 40.0%
! TACTGTCGGTCTTCTCTTTT+CGG - chr4.4:10786108-10786127 MS.gene28068:intron 40.0%
! TCCTGCGGGTAGTAATTTTT+GGG - chr4.4:10785205-10785224 MS.gene28068:intron 40.0%
! TGGACCAAATTTAAGGCATG+TGG - chr4.4:10784721-10784740 MS.gene28068:intron 40.0%
! TTTTCCCAAACAGTCTCACA+AGG + chr4.4:10782952-10782971 None:intergenic 40.0%
!! ACCATTTTGAGTCATGTGCT+TGG - chr4.4:10786748-10786767 MS.gene28068:intron 40.0%
!! CAACCGAAATACTTGTTGTC+AGG + chr4.4:10784656-10784675 None:intergenic 40.0%
!! CTCATTTTTCTACCTTCTGC+AGG - chr4.4:10783410-10783429 MS.gene28068:intron 40.0%
!! GTCAGGTTGGACCAAATTTA+AGG - chr4.4:10784714-10784733 MS.gene28068:intron 40.0%
!!! CTTAGCTGACTTGTTTTCAC+AGG - chr4.4:10783527-10783546 MS.gene28068:CDS 40.0%
AACGTTCTCCTTCAGGGAAT+TGG + chr4.4:10782626-10782645 None:intergenic 45.0%
AACGTTCTTTGGATCACCAC+AGG - chr4.4:10787504-10787523 MS.gene28068:CDS 45.0%
AGGAAGAAGAATGCAAGGCT+GGG + chr4.4:10783723-10783742 None:intergenic 45.0%
AGGCTCACAACATTACCATC+TGG + chr4.4:10784636-10784655 None:intergenic 45.0%
ATGGGTTTGTATGCAGCGTT+TGG - chr4.4:10784469-10784488 MS.gene28068:intron 45.0%
ATTCAAAACAGGTGGCTCGA+CGG + chr4.4:10784970-10784989 None:intergenic 45.0%
CACTTGGACTAAGTATGCCT+CGG - chr4.4:10785374-10785393 MS.gene28068:intron 45.0%
CCAAAGTAACGTTCTCCTTC+AGG + chr4.4:10782633-10782652 None:intergenic 45.0%
CCTGAAGGAGAACGTTACTT+TGG - chr4.4:10782630-10782649 MS.gene28068:CDS 45.0%
CTCCCAAACGATTTGTACAG+AGG - chr4.4:10784273-10784292 MS.gene28068:intron 45.0%
CTGACATAATGCCCATGGTT+GGG + chr4.4:10787409-10787428 None:intergenic 45.0%
GACACCAACACCTTCAGAAA+AGG - chr4.4:10786220-10786239 MS.gene28068:intron 45.0%
GATGGTTGTGAGTTGTGACA+TGG + chr4.4:10785700-10785719 None:intergenic 45.0%
GCCAAGCACATGACTCAAAA+TGG + chr4.4:10786752-10786771 None:intergenic 45.0%
GCTCAAGGGGAAAAACAACT+CGG + chr4.4:10787309-10787328 None:intergenic 45.0%
GGATAGCAAAAACCACTGTG+AGG + chr4.4:10783792-10783811 None:intergenic 45.0%
GTAGTTGTTCATGTTGGCAG+TGG - chr4.4:10787382-10787401 MS.gene28068:intron 45.0%
GTTGCAAGTTGTTGTGACCA+GGG - chr4.4:10786467-10786486 MS.gene28068:intron 45.0%
TCTCATTGGTGAGTATTCCC+TGG + chr4.4:10786487-10786506 None:intergenic 45.0%
TGAATGACCAGAATGTGAGG+AGG + chr4.4:10787232-10787251 None:intergenic 45.0%
TGTTGCAAGTTGTTGTGACC+AGG - chr4.4:10786466-10786485 MS.gene28068:intron 45.0%
TTACTCAGCTTCAGCTCAAG+GGG + chr4.4:10787322-10787341 None:intergenic 45.0%
TTCCACTGAGACGTTGAATG+CGG - chr4.4:10786616-10786635 MS.gene28068:intron 45.0%
TTGCAAGCACCTTGTCTCAT+TGG + chr4.4:10786501-10786520 None:intergenic 45.0%
TTGCACCTTGGTCACTAGAT+TGG + chr4.4:10787154-10787173 None:intergenic 45.0%
TTGCCAAATAGTGGCCATAG+CGG - chr4.4:10783124-10783143 MS.gene28068:intron 45.0%
TTGTGGCATCAGCTGTTACT+TGG - chr4.4:10786685-10786704 MS.gene28068:CDS 45.0%
! ACATCTAGACCGTAACTTGC+AGG + chr4.4:10785414-10785433 None:intergenic 45.0%
! ATAGTGTTACAGTGCCGCTA+TGG + chr4.4:10783141-10783160 None:intergenic 45.0%
! ATTTTCTTCCGCATCCCCTA+AGG + chr4.4:10783496-10783515 None:intergenic 45.0%
! CTGAGTGGATTCAAAACAGG+TGG + chr4.4:10784978-10784997 None:intergenic 45.0%
! GACCTGAGTGGATTCAAAAC+AGG + chr4.4:10784981-10785000 None:intergenic 45.0%
! TGTCGACATTCTGGAGAAAG+AGG - chr4.4:10786172-10786191 MS.gene28068:intron 45.0%
!! CACCTGTTTTGAATCCACTC+AGG - chr4.4:10784976-10784995 MS.gene28068:intron 45.0%
!! GCAACCTTTTCTGAAGGTGT+TGG + chr4.4:10786227-10786246 None:intergenic 45.0%
!! TTTTCTGTGACAAGTGCTGC+AGG - chr4.4:10786648-10786667 MS.gene28068:CDS 45.0%
!!! GTGGTTTGCCTTTGTTTTGC+AGG + chr4.4:10785298-10785317 None:intergenic 45.0%
AGAATGCAAGGCTGGGAAGT+CGG + chr4.4:10783716-10783735 None:intergenic 50.0%
CAAGGCTGACATAATGCCCA+TGG + chr4.4:10787414-10787433 None:intergenic 50.0%
CGAGGCATACTTAGTCCAAG+TGG + chr4.4:10785376-10785395 None:intergenic 50.0%
GAGGAAGAAGAATGCAAGGC+TGG + chr4.4:10783724-10783743 None:intergenic 50.0%
GATGTTCATTCATGGGCGTG+AGG - chr4.4:10785429-10785448 MS.gene28068:intron 50.0%
GCCCAAAAATTACTACCCGC+AGG + chr4.4:10785209-10785228 None:intergenic 50.0%
GCTGACATAATGCCCATGGT+TGG + chr4.4:10787410-10787429 None:intergenic 50.0%
GCTGATCCAATTGACCTGAG+TGG + chr4.4:10784993-10785012 None:intergenic 50.0%
GGCATACTTAGTCCAAGTGG+TGG + chr4.4:10785373-10785392 None:intergenic 50.0%
GGCGGCTATGATTCATGCTT+TGG - chr4.4:10783671-10783690 MS.gene28068:CDS 50.0%
TAAGTATGCCTCGGTGGCTT+GGG - chr4.4:10785383-10785402 MS.gene28068:intron 50.0%
TCCAAAGAACGTTTGCACGG+CGG + chr4.4:10787497-10787516 None:intergenic 50.0%
TCCAGCAGTTGTTCCCGAAA+TGG + chr4.4:10783453-10783472 None:intergenic 50.0%
TCCATTTCGGGAACAACTGC+TGG - chr4.4:10783449-10783468 MS.gene28068:intron 50.0%
TCGTTTGGGAGCAATGACAC+CGG + chr4.4:10784264-10784283 None:intergenic 50.0%
TGCAAAGGGTTCCAATCCTG+CGG - chr4.4:10785190-10785209 MS.gene28068:intron 50.0%
TGGGCTGATCCTGCAAGTTA+CGG - chr4.4:10785402-10785421 MS.gene28068:intron 50.0%
TTGGACTAAGTATGCCTCGG+TGG - chr4.4:10785377-10785396 MS.gene28068:intron 50.0%
! AGGCATGTGGTTTTCACCCT+CGG - chr4.4:10784734-10784753 MS.gene28068:intron 50.0%
! CATTCTGGAGAAAGAGGCTC+AGG - chr4.4:10786178-10786197 MS.gene28068:intron 50.0%
! GTCGGTCTTCTCTTTTCGGT+AGG - chr4.4:10786112-10786131 MS.gene28068:intron 50.0%
!! TCCAAGCTTGAGAAGGCACT+CGG - chr4.4:10782597-10782616 MS.gene28068:CDS 50.0%
!! TCTGAAGGTGTTGGTGTCTC+TGG + chr4.4:10786218-10786237 None:intergenic 50.0%
!! TGCTGGTTCCAAGCTTGAGA+AGG - chr4.4:10782590-10782609 MS.gene28068:CDS 50.0%
!! TTCTATGAGAGCATTGGGCC+CGG - chr4.4:10787562-10787581 MS.gene28068:CDS 50.0%
ACCGAGTGCCTTCTCAAGCT+TGG + chr4.4:10782601-10782620 None:intergenic 55.0%
CACTGAGACGTTGAATGCGG+AGG - chr4.4:10786619-10786638 MS.gene28068:intron 55.0%
CTAAGTATGCCTCGGTGGCT+TGG - chr4.4:10785382-10785401 MS.gene28068:intron 55.0%
CTCCGCATTCAACGTCTCAG+TGG + chr4.4:10786621-10786640 None:intergenic 55.0%
CTCGGTGACCAATTCCCTGA+AGG - chr4.4:10782615-10782634 MS.gene28068:CDS 55.0%
GCAAAGGGTTCCAATCCTGC+GGG - chr4.4:10785191-10785210 MS.gene28068:intron 55.0%
TCCGCCGTGCAAACGTTCTT+TGG - chr4.4:10787493-10787512 MS.gene28068:CDS 55.0%
TGGCTCGACGGATCTTAGAC+AGG + chr4.4:10784958-10784977 None:intergenic 55.0%
TTGGCAGTGGTCCCAACCAT+GGG - chr4.4:10787395-10787414 MS.gene28068:intron 55.0%
! GTGCCGCTATGGCCACTATT+TGG + chr4.4:10783130-10783149 None:intergenic 55.0%
!! TGAGGAGTGTGTGTTGGCTC+TGG - chr4.4:10785447-10785466 MS.gene28068:intron 55.0%
GTTGGCAGTGGTCCCAACCA+TGG - chr4.4:10787394-10787413 MS.gene28068:intron 60.0%
! TGGGCGTGAGGAGTGTGTGT+TGG - chr4.4:10785441-10785460 MS.gene28068:intron 60.0%
AGGATCAGCCCAAGCCACCG+AGG + chr4.4:10785394-10785413 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 10782582 10787597 10782582 ID=MS.gene28068
chr4.4 mRNA 10782582 10787597 10782582 ID=MS.gene28068.t1;Parent=MS.gene28068
chr4.4 exon 10787481 10787597 10787481 ID=MS.gene28068.t1.exon1;Parent=MS.gene28068.t1
chr4.4 CDS 10787481 10787597 10787481 ID=cds.MS.gene28068.t1;Parent=MS.gene28068.t1
chr4.4 exon 10786631 10786747 10786631 ID=MS.gene28068.t1.exon2;Parent=MS.gene28068.t1
chr4.4 CDS 10786631 10786747 10786631 ID=cds.MS.gene28068.t1;Parent=MS.gene28068.t1
chr4.4 exon 10785842 10785940 10785842 ID=MS.gene28068.t1.exon3;Parent=MS.gene28068.t1
chr4.4 CDS 10785842 10785940 10785842 ID=cds.MS.gene28068.t1;Parent=MS.gene28068.t1
chr4.4 exon 10783857 10784045 10783857 ID=MS.gene28068.t1.exon4;Parent=MS.gene28068.t1
chr4.4 CDS 10783857 10784045 10783857 ID=cds.MS.gene28068.t1;Parent=MS.gene28068.t1
chr4.4 exon 10783510 10783691 10783510 ID=MS.gene28068.t1.exon5;Parent=MS.gene28068.t1
chr4.4 CDS 10783510 10783691 10783510 ID=cds.MS.gene28068.t1;Parent=MS.gene28068.t1
chr4.4 exon 10782582 10782987 10782582 ID=MS.gene28068.t1.exon6;Parent=MS.gene28068.t1
chr4.4 CDS 10782582 10782987 10782582 ID=cds.MS.gene28068.t1;Parent=MS.gene28068.t1
Gene Sequence

>MS.gene28068

ATGGGTGCTGCTGGTTCCAAGCTTGAGAAGGCACTCGGTGACCAATTCCCTGAAGGAGAACGTTACTTTGGTCTTGAGAATTTCGGCAATACTTGTTATTGTAACAGCGTTTTACAGGTTTTAATCGATTCTTTTTAATCTTCTATTTTCCAATCCGATTCATTCTAAATCGTAGTGAATTTGCTTTCTTTGATTGTTTATTCATGATTCATACACATCGTTAATTGTAACCATTTTTTTCTTTTCTGAATTTATGTTGACTTGTCCAAACAAATTTTTGAAGAGTTTAATTGTTGAATAATCTTTAAGGATTTTTGTTATTTACCTGTTTGGATTTGATTATTTGAGTTTATCTAATGACATAAGTCCTTGTGAGACTGTTTGGGAAAACTTATTAAAGCAATTTATGATATGTTTATAAGTTGTTTTCACTTATTTTCATAAGCTCTTCAAGATAACTTCTATAAACAGCTTATATGTTATATGTAAACAGTTTGAATTTAATCTATTTTTTGTTATATAATTATTTTTAGATAACAGGGTTGCCAAATAGTGGCCATAGCGGCACTGTAACACTATAGAGTAGCCGAATTTAGACTAATCGCTATAGTGGCTATTGCAGTTGTGTTGTAGCATAGTAGAATTTGAACAAACCGTTGTTTTTTGTGATTTGCAATTGACAACACTGCACAGAACCGCTTATATGACAATCACTTAATTAAGTTGTTCTTCCAAACAGGCCTAATTATGATTCTAAGTATTAAGTTTGAAGATGGGTTTGTTTGTTATATTTTTGTGGAGATTTCTGGGCTGTTCAGCATCATGTTACTCATTTTTCTACCTTCTGCAGGCACTATACTTTTGTGTTCCATTTCGGGAACAACTGCTGGAGTATTATGGAAATAACAAAACCTTAGGGGATGCGGAAGAAAATCTTTTGACTTGCTTAGCTGACTTGTTTTCACAGGTAATCAATTTGTAGTTTGGAAATTTTGTGCATTACATGGATGACGCCTCTATGCTTTTTCATATTTGATTGACTGAAGCATGATTCACAGTTTGATAGTTTGCATTGTCTTCACTAATTTCGGCGGCTATGATTCATGCTTTGGACTCTTGTCAAAGATGCTGCCGACTTCCCAGCCTTGCATTCTTCTTCCTCTTCTTTCATTTGGTCTTCAAACAAGTGTTTTTTTTTATCTGAATGCCTCACAGTGGTTTTTGCTATCCTTAGTTTTGGTTTTAAAACCATATTTTCTTTAATAACATATCCTACCAGATTTTCTTATTTTTTATTTCCTTTTTCTGTTATTGTTTGTGTGTTGAAGGAGAATTTGTCAGGCATGAGACAAACAAGTTGAGAATAAAAGATAGGGTTACTGAATAAAAATGTAAATAAGTCTTTTGTAACTGACCATAGAAGCTGCACCATGATTATCTAGCATCTGGAAAGTATGAAAATTAGTCGTTGCAAATTTTAAAATCAGCGTGATACATAAGACATCCAACAATAGAGTTTACTTTGTGAGGTTTGTGAACCTGAAACAAATCATTTGTATAAATCCTATCAAGTATCAACTATATCTTGATGTCATTTACATGCTTAGTTATGTCTTTCTTGATCCTGAATTCAACATATTTATTTCTGTTGGTATAGATAAGTTCGCAGAAGAAGAAAACCGGTGTCATTGCTCCCAAACGATTTGTACAGAGGTTGAAAAAACAGAATGAACTCTTTCGTAGCTATATGCATCAGGTATGTACTCTACCATAAGTGTTAAGAATAAGTTCCTGTACATCGAATTGTTATTCATGAGTTCTGTAAAAACTGTTGACAGTGACATTTAGATTATAAAGTATAAATATAAATAAGACATTAGTTTGGATATGGGTTTGTATGCAGCGTTTGGCTATGTTACTTGTCACTCCATGATTATGCAAAGATGCAAGTAGGTGTTGCTCCATGTTTATTTACATTTCCTTGCTTCGAACTTTCAGCTTTTCTGCACATGAATCCTAGTTAGAGATGCTGTTATCTATATTGGATGTTTCCAGATGGTAATGTTGTGAGCCTGACAACAAGTATTTCGGTTGGTAGATCATTAGGCAGACCAGTGTTACTTTTTTATTCTGTCAGGTTGGACCAAATTTAAGGCATGTGGTTTTCACCCTCGGAATTGTTACAAGCTTTTTTTAATTCACAAAAACATTTAAGGTTGTTAGCATGTTAACATTTACTTTATGTTGACAGTCTCACATTTGATGTGATATGGCCCCTGAAAAATTATTTATAAGCGGGAGGCATCTCTCACCTTACAAGTTAGTTTTGTAGGGTGAATTAACACCAATCCAAAATTTGAGATGGTGTCAGAGCCTGTCTAAGATCCGTCGAGCCACCTGTTTTGAATCCACTCAGGTCAATTGGATCAGCCCAACACATGTTGAAGCTGAAAGCAAATTCTAAGATGAGGCCTTTAAATGCTTAAGTTAAAAATATAATAATTTGCAACAAAAAAAATATAAAATATACATCACTATGTATAAAATAAAAAAGTCAATCAGATATTTATTTGTGATGCAGTGGTTTAGCTTGCTTGTTTTTCTCAATTGCAAAGGGTTCCAATCCTGCGGGTAGTAATTTTTGGGCATTATTTTTTGTAAAGAAATACGATAATGCAGAAAAGGCTTATCCAAGAATTGAATGTAAGTTCTACCTGCAAAACAAAGGCAAACCACTGTGTCATTATAAACATTTGCAATATCATTGGACAGCACAATATATGGAAATCCACCACTTGGACTAAGTATGCCTCGGTGGCTTGGGCTGATCCTGCAAGTTACGGTCTAGATGTTCATTCATGGGCGTGAGGAGTGTGTGTTGGCTCTGGTGAGAGTCCCACAAGAGTCAACACAAATTTATAACCTGAAGGGTATTTATAAGTGGGTCCCACCAGAGTCAACACAAATTTATAACATGAAAAAGTAGTTATAAGTGGGAGACATTCTTCACCTTACAAGTTGGTTTTGTATGGTTGAGTTAAGTCCGACCAAATTAAGACTTTAGATATGATCTTTATTAACTATTATTATATATCCGGTGGAATCATAATCTTTTCCATGTCACAACTCACAACCATCCCTTATCACTTTACATTATTAAGCCTGCTAATAGATTTGGCTGCATATCACTGTTATACTGATGGTGATACCAATTAGTTTTTTTTTCTTTTCTTTTCCTTTTCATTCTATGATGAAATAATTCTGTAACTGATGTTGGGTGTCTGTTTAGCAGAAATTACAACAATTTGTTACTTGCAGATGAGATTGTAGTTTACCATGAATTTTCACTGTAGCATACAAGTTTATTCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTGATTGTTTATAGTCTGTTAATTTTAATGTATCATTGCTTGCACAGTACCTCATATTTTGTCTAGTTTTTAACTAATACAACAATGTTACTGTCGGTCTTCTCTTTTCGGTAGGATGCCCACGAATTCTTGAACTTTTTACTGAATGAACTTGTCGACATTCTGGAGAAAGAGGCTCAGGCTGCAAAGACTGATCCAGAGACACCAACACCTTCAGAAAAGGTTGCAAATGGGTTCAAGAATGGTCATGCTAATGGACCTAAGAAAGAGCCTTTAATTACTTGGGTACACAAAAACTTTCAGGTGACCTGCTTTGCCAATTTTTTTGTCATTTTTTTTTTTTGTTGTTGCAACAAATTTGGAGGAAGTATAAATTGTGAACTTTGTAATGGATACAGTTTGTTGATCACAAAATTTAGATTTATATCTATATTGTGGAATTTCATTGTTGCAAGTTGTTGTGACCAGGGAATACTCACCAATGAGACAAGGTGCTTGCAATGTGAAACTGTGACAGCTAGGGACGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAAAACAGTTCAATTACAAGCTGTTTGAAAAATTTCAGTTCCACTGAGACGTTGAATGCGGAGGACAAATTTTTCTGTGACAAGTGCTGCAGGTATATGCTTTTATATTGTGGCATCAGCTGTTACTTGGTTTCTCGATTGGTTGGGAAAATGTAAACTGTCTGTTGTCAACCATTTTGAGTCATGTGCTTGGCTAAACGATGCTACTGCTTGTTTAACATGGATTTCAATTGATGCATTAGACTTTATCAAAAACCAAATTTTCAGATATCTGTTCAGATCTAGATCATTTTAGTAGTTTCCTGTAAAGGTTTTTTACGCCATTGTTTTCTACTTTTAACTGGAGAGGGAAATAAAATAAATGTGGTGACTCATATATGTCAAATTGTTTGAATATCATGTATATTTTTGGACATTTTATCTCCTTTTCATTTTCAACAAGCAAACCGTAACATGTTTGTTTTTCCATTGATTGGCACTTCATTTGTTTTCTGAACGGGATTTCTTGGTCATGTTAGTTCAGTGTGTACAAATATATATGCACTATTTTCCTCTGTTTTTCATGCCCATTTACCAATCTAGTGACCAAGGTGCAAACTTTCTTTTGGTATTAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCTCCTCACATTCTGGTCATTCATCTCAAGCGGTTTAAATACATGGAACAGCTGGGCCGCTACAAGAAGTTGTCTTACCGAGTTGTTTTTCCCCTTGAGCTGAAGCTGAGTAATACTGTTGAAGATGCAGATATTGAGTATTCTCTATTTGCGGTAGTTGTTCATGTTGGCAGTGGTCCCAACCATGGGCATTATGTCAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCCGCCGTGCAAACGTTCTTTGGATCACCACAGGAATATTCAACTAACACCGACCATGGGTACATTTTGTTCTATGAGAGCATTGGGCCCGGTAACAGTAACTAG
Protein sequence

>MS.gene28068.t1

MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNKTLGDAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKTDPETPTPSEKVANGFKNGHANGPKKEPLITWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELKLSNTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSPQEYSTNTDHGYILFYESIGPGNSN