AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28166

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28166.t1 MTR_8g092140 98.131 107 2 0 1 107 109 215 6.45e-76 224
MS.gene28166.t1 MTR_3g095080 89.362 94 8 2 14 107 132 223 1.08e-48 155
MS.gene28166.t1 MTR_3g095080 89.362 94 8 2 14 107 108 199 2.01e-48 154
MS.gene28166.t1 MTR_8g007270 78.161 87 18 1 20 106 123 208 1.05e-42 140
MS.gene28166.t1 MTR_5g043880 64.706 85 29 1 22 106 95 178 2.73e-32 114
MS.gene28166.t1 MTR_7g079010 57.471 87 33 2 23 106 110 195 1.49e-30 108
MS.gene28166.t1 MTR_1g086790 65.789 76 25 1 32 107 139 213 8.71e-30 108
MS.gene28166.t1 MTR_2g033820 68.056 72 22 1 35 106 187 257 2.53e-29 108
MS.gene28166.t1 MTR_4g094588 70.000 70 20 1 37 106 164 232 5.31e-29 107
MS.gene28166.t1 MTR_3g056100 62.667 75 27 1 32 106 239 312 6.92e-29 108
MS.gene28166.t1 MTR_3g056100 53.125 64 28 2 44 106 90 152 1.28e-14 68.9
MS.gene28166.t1 MTR_3g056100 62.667 75 27 1 32 106 252 325 7.75e-29 108
MS.gene28166.t1 MTR_3g056100 53.125 64 28 2 44 106 90 152 1.23e-14 68.9
MS.gene28166.t1 MTR_5g094430 60.000 75 29 1 32 106 211 284 7.91e-29 107
MS.gene28166.t1 MTR_5g094430 54.545 55 24 1 52 106 66 119 8.45e-14 66.2
MS.gene28166.t1 MTR_5g094430 60.000 75 29 1 32 106 233 306 1.07e-28 107
MS.gene28166.t1 MTR_5g094430 54.545 55 24 1 52 106 88 141 7.38e-14 66.6
MS.gene28166.t1 MTR_7g109800 56.122 98 39 3 10 107 107 200 2.03e-28 105
MS.gene28166.t1 MTR_3g056100 62.667 75 27 1 32 106 383 456 3.54e-28 107
MS.gene28166.t1 MTR_3g056100 56.364 55 23 1 52 106 243 296 3.12e-15 70.5
MS.gene28166.t1 MTR_3g056100 62.667 75 27 1 32 106 396 469 4.21e-28 107
MS.gene28166.t1 MTR_3g056100 56.364 55 23 1 52 106 243 296 3.35e-15 70.5
MS.gene28166.t1 MTR_7g011820 50.943 106 50 2 2 106 360 464 5.48e-28 106
MS.gene28166.t1 MTR_7g011820 60.000 55 21 1 52 106 228 281 1.05e-16 74.7
MS.gene28166.t1 MTR_3g104750 57.143 77 32 1 31 107 84 159 8.43e-28 100
MS.gene28166.t1 MTR_4g122530 65.753 73 24 1 35 107 192 263 8.99e-28 105
MS.gene28166.t1 MTR_5g074400 62.667 75 27 1 32 106 401 474 1.01e-27 105
MS.gene28166.t1 MTR_5g074400 56.364 55 23 1 52 106 243 296 1.31e-14 68.9
MS.gene28166.t1 MTR_5g091390 65.714 70 23 1 37 106 143 211 1.48e-27 102
MS.gene28166.t1 MTR_5g094430 60.000 75 29 1 32 106 345 418 1.84e-27 105
MS.gene28166.t1 MTR_5g094430 54.545 55 24 1 52 106 200 253 4.43e-14 67.4
MS.gene28166.t1 MTR_3g031220 61.039 77 29 1 30 106 344 419 2.40e-27 104
MS.gene28166.t1 MTR_3g031220 56.364 55 23 1 52 106 198 251 1.57e-14 68.6
MS.gene28166.t1 MTR_7g080000 45.536 112 53 2 2 106 376 486 7.15e-27 103
MS.gene28166.t1 MTR_7g080000 55.357 56 24 1 51 106 233 287 8.84e-16 72.0
MS.gene28166.t1 MTR_4g082580 43.750 112 54 1 4 106 221 332 8.23e-27 102
MS.gene28166.t1 MTR_4g082580 53.571 56 26 0 52 107 145 200 7.18e-15 69.3
MS.gene28166.t1 MTR_3g009470 58.667 75 30 1 32 106 476 549 2.60e-26 102
MS.gene28166.t1 MTR_3g009470 54.545 55 24 1 52 106 280 333 2.68e-15 70.9
MS.gene28166.t1 MTR_7g028415 60.274 73 28 1 39 111 81 152 3.03e-26 96.3
MS.gene28166.t1 MTR_7g028710 60.274 73 28 1 39 111 81 152 3.03e-26 96.3
MS.gene28166.t1 MTR_8g096730 43.564 101 51 2 16 111 30 129 6.09e-26 94.7
MS.gene28166.t1 MTR_5g042920 58.667 75 30 1 32 106 301 374 7.67e-26 100
MS.gene28166.t1 MTR_5g042920 60.714 56 19 2 52 106 151 204 1.45e-14 68.6
MS.gene28166.t1 MTR_1g015140 55.294 85 37 1 23 107 74 157 8.57e-26 94.7
MS.gene28166.t1 MTR_4g013260 57.692 78 32 1 29 106 314 390 1.32e-25 99.8
MS.gene28166.t1 MTR_4g013260 52.727 55 26 0 52 106 184 238 4.91e-15 70.1
MS.gene28166.t1 MTR_7g080020 56.000 75 32 1 32 106 474 547 2.10e-25 99.8
MS.gene28166.t1 MTR_7g080020 56.364 55 23 1 52 106 280 333 1.54e-16 74.3
MS.gene28166.t1 MTR_7g100510 57.746 71 29 1 36 106 346 415 1.87e-23 93.6
MS.gene28166.t1 MTR_7g100510 57.407 54 22 1 53 106 190 242 1.65e-14 68.6
MS.gene28166.t1 MTR_7g071120 56.000 75 32 1 32 106 305 378 4.87e-23 92.8
MS.gene28166.t1 MTR_7g071120 54.545 55 24 1 52 106 166 219 1.19e-13 65.9
MS.gene28166.t1 MTR_3g095040 58.571 70 28 1 37 106 104 172 6.20e-23 88.6
MS.gene28166.t1 MTR_7g062220 62.712 59 22 0 52 110 124 182 5.18e-22 88.6
MS.gene28166.t1 MTR_3g095080 83.607 61 8 2 14 74 132 190 1.11e-21 85.1
MS.gene28166.t1 MTR_1g077780 52.000 75 35 1 32 106 43 116 1.51e-21 83.6
MS.gene28166.t1 MTR_8g092010 53.623 69 31 1 38 106 95 162 5.36e-20 80.5
MS.gene28166.t1 MTR_2g105060 47.368 76 38 2 33 106 74 149 1.74e-19 80.5
MS.gene28166.t1 MTR_2g105060 47.368 76 38 2 33 106 149 224 2.55e-19 81.3
MS.gene28166.t1 MTR_1g078260 44.565 92 36 2 31 107 212 303 3.05e-19 82.0
MS.gene28166.t1 MTR_6g086555 35.849 106 58 3 10 106 157 261 5.20e-19 81.3
MS.gene28166.t1 MTR_5g097490 50.704 71 34 1 36 106 237 306 1.35e-18 79.7
MS.gene28166.t1 MTR_1g009613 44.706 85 42 2 23 106 237 317 2.59e-18 78.6
MS.gene28166.t1 MTR_3g108960 45.122 82 40 3 26 106 292 369 3.31e-18 79.0
MS.gene28166.t1 MTR_4g094908 42.857 84 43 2 24 106 242 321 6.34e-18 77.4
MS.gene28166.t1 MTR_4g130900 48.000 75 38 1 32 106 340 413 8.72e-18 77.8
MS.gene28166.t1 MTR_5g067680 53.333 60 25 1 52 108 202 261 1.29e-17 77.0
MS.gene28166.t1 MTR_5g016610 42.857 84 43 2 24 106 175 254 1.35e-17 75.9
MS.gene28166.t1 MTR_3g090860 52.381 63 27 1 51 110 132 194 2.84e-17 75.9
MS.gene28166.t1 MTR_2g088000 50.794 63 30 1 46 107 343 405 4.25e-17 75.9
MS.gene28166.t1 MTR_8g099350 53.333 60 25 1 52 108 132 191 4.55e-17 75.5
MS.gene28166.t1 MTR_4g132430 47.297 74 37 2 34 106 110 182 6.43e-17 75.1
MS.gene28166.t1 MTR_7g110720 51.613 62 29 1 46 106 183 244 7.92e-17 75.1
MS.gene28166.t1 MTR_1g013760 52.727 55 25 1 53 106 141 195 8.48e-17 73.9
MS.gene28166.t1 MTR_7g110720 51.613 62 29 1 46 106 210 271 1.03e-16 74.7
MS.gene28166.t1 MTR_0117s0040 51.667 60 28 1 48 106 70 129 1.42e-16 72.8
MS.gene28166.t1 MTR_4g127040 39.286 84 46 2 24 106 221 300 2.33e-16 73.2
MS.gene28166.t1 MTR_4g107970 46.575 73 37 2 35 106 162 233 3.28e-16 73.2
MS.gene28166.t1 MTR_4g132430 51.613 62 29 1 46 106 255 316 4.23e-16 73.2
MS.gene28166.t1 MTR_2g023930 45.946 74 38 2 34 106 288 360 4.54e-16 72.8
MS.gene28166.t1 MTR_2g075750 44.776 67 34 1 50 113 26 92 5.78e-16 70.1
MS.gene28166.t1 MTR_7g073430 51.667 60 26 1 52 108 122 181 5.96e-16 71.6
MS.gene28166.t1 MTR_4g107970 46.575 73 37 2 35 106 239 310 6.39e-16 72.4
MS.gene28166.t1 MTR_3g106060 52.727 55 25 1 53 106 139 193 7.29e-16 71.6
MS.gene28166.t1 MTR_1g070455 48.333 60 30 1 48 106 289 348 9.12e-16 71.6
MS.gene28166.t1 MTR_3g053330 50.000 62 30 1 46 106 245 306 1.73e-15 71.2
MS.gene28166.t1 MTR_2g075700 51.613 62 27 1 50 108 142 203 1.92e-15 70.5
MS.gene28166.t1 MTR_2g075610 48.387 62 29 1 50 108 27 88 2.72e-15 68.6
MS.gene28166.t1 MTR_7g009730 52.459 61 28 1 47 106 214 274 2.89e-15 70.5
MS.gene28166.t1 MTR_3g009470 54.545 55 24 1 52 106 280 333 3.04e-15 70.5
MS.gene28166.t1 MTR_2g075680 46.774 62 30 1 50 108 146 207 4.87e-15 69.3
MS.gene28166.t1 MTR_4g007060 48.276 58 29 1 50 106 126 183 5.47e-15 68.9
MS.gene28166.t1 MTR_7g073380 35.593 118 63 4 1 108 68 182 5.81e-15 68.9
MS.gene28166.t1 MTR_4g007060 48.276 58 29 1 50 106 160 217 5.96e-15 69.3
MS.gene28166.t1 MTR_7g117200 50.820 61 27 1 51 108 117 177 6.80e-15 69.3
MS.gene28166.t1 MTR_3g031220 56.364 55 23 1 52 106 198 251 1.09e-14 68.9
MS.gene28166.t1 MTR_3g031220 60.465 43 16 1 30 72 344 385 1.28e-11 60.1
MS.gene28166.t1 MTR_2g045360 34.454 119 63 4 2 106 149 266 2.67e-14 67.8
MS.gene28166.t1 MTR_1g013790 44.828 58 31 1 50 106 99 156 3.19e-14 66.6
MS.gene28166.t1 MTR_4g049790 48.571 70 34 2 38 106 299 367 3.74e-14 67.4
MS.gene28166.t1 MTR_8g005750 46.667 60 29 1 52 108 103 162 4.77e-14 66.6
MS.gene28166.t1 MTR_8g028565 37.113 97 51 3 14 106 120 210 4.78e-14 67.0
MS.gene28166.t1 MTR_4g094412 52.632 57 26 1 51 106 233 289 6.60e-14 66.6
MS.gene28166.t1 MTR_0002s1250 45.000 60 30 1 52 108 111 170 8.06e-14 65.9
MS.gene28166.t1 MTR_4g094412 52.632 57 26 1 51 106 242 298 8.86e-14 66.2
MS.gene28166.t1 MTR_5g074200 52.727 55 25 1 52 106 220 273 2.38e-13 64.7
MS.gene28166.t1 MTR_8g087000 49.091 55 27 1 53 106 78 132 2.49e-13 64.3
MS.gene28166.t1 MTR_8g087000 49.091 55 27 1 53 106 77 131 2.70e-13 63.9
MS.gene28166.t1 MTR_2g075690 43.548 62 32 1 50 108 139 200 3.67e-13 64.3
MS.gene28166.t1 MTR_3g093830 45.763 59 29 1 53 108 128 186 4.63e-13 63.9
MS.gene28166.t1 MTR_2g032030 46.552 58 30 1 50 106 265 322 5.46e-13 63.9
MS.gene28166.t1 MTR_2g032030 46.552 58 30 1 50 106 265 322 7.08e-13 63.9
MS.gene28166.t1 MTR_8g098945 47.619 63 31 2 46 106 122 184 8.38e-13 63.2
MS.gene28166.t1 MTR_2g016770 47.273 55 28 1 53 106 36 90 8.42e-13 62.4
MS.gene28166.t1 MTR_2g016770 47.273 55 28 1 53 106 28 82 9.25e-13 62.0
MS.gene28166.t1 MTR_2g024380 47.273 55 28 1 53 106 252 306 1.23e-12 63.2
MS.gene28166.t1 MTR_8g027860 44.262 61 31 1 51 108 135 195 1.23e-12 63.2
MS.gene28166.t1 MTR_8g032510 36.893 103 55 3 9 108 83 178 1.97e-12 62.0
MS.gene28166.t1 MTR_5g097500 42.254 71 40 1 36 106 215 284 2.48e-12 62.0
MS.gene28166.t1 MTR_5g029850 44.118 68 37 1 1 68 1 67 2.65e-12 58.2
MS.gene28166.t1 MTR_4g049760 50.000 58 28 1 50 106 288 345 2.92e-12 62.0
MS.gene28166.t1 MTR_2g024350 47.273 55 28 1 53 106 9 63 3.31e-12 60.8
MS.gene28166.t1 MTR_7g109600 47.273 55 28 1 53 106 54 108 3.39e-12 61.2
MS.gene28166.t1 MTR_7g079040 43.939 66 30 2 42 106 150 209 3.95e-12 61.6
MS.gene28166.t1 MTR_5g073620 41.667 60 32 1 52 108 672 731 1.10e-11 60.5
MS.gene28166.t1 MTR_5g067700 42.373 59 31 1 53 108 107 165 1.48e-11 59.3
MS.gene28166.t1 MTR_8g067650 34.831 89 57 1 19 106 306 394 2.20e-11 59.7
MS.gene28166.t1 MTR_8g067635 34.524 84 54 1 24 106 321 404 3.59e-11 58.9
MS.gene28166.t1 MTR_2g083870 45.455 55 29 1 53 106 81 135 3.62e-11 58.5
MS.gene28166.t1 MTR_1g099600 43.750 64 29 2 44 106 183 240 6.80e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28166.t1 AT4G39410 80.808 99 14 2 13 107 181 278 6.27e-53 168
MS.gene28166.t1 AT2G44745 70.093 107 28 3 3 106 94 199 3.55e-43 140
MS.gene28166.t1 AT1G69310 65.432 81 27 1 26 106 122 201 3.36e-33 117
MS.gene28166.t1 AT1G69310 65.432 81 27 1 26 106 122 201 3.36e-33 117
MS.gene28166.t1 AT1G69310 65.432 81 27 1 26 106 122 201 3.36e-33 117
MS.gene28166.t1 AT1G64000 63.750 80 28 1 27 106 90 168 3.65e-30 107
MS.gene28166.t1 AT5G41570 61.446 83 31 1 24 106 71 152 3.99e-30 106
MS.gene28166.t1 AT2G46130 64.000 75 26 1 32 106 11 84 6.77e-30 103
MS.gene28166.t1 AT4G18170 68.000 75 23 1 32 106 153 226 1.77e-29 108
MS.gene28166.t1 AT4G26640 59.036 83 33 1 32 114 186 267 4.90e-29 108
MS.gene28166.t1 AT4G26640 53.226 62 28 1 45 106 28 88 1.32e-14 68.6
MS.gene28166.t1 AT4G26640 59.036 83 33 1 32 114 186 267 4.90e-29 108
MS.gene28166.t1 AT4G26640 53.226 62 28 1 45 106 28 88 1.32e-14 68.6
MS.gene28166.t1 AT4G26640 59.036 83 33 1 32 114 186 267 4.90e-29 108
MS.gene28166.t1 AT4G26640 53.226 62 28 1 45 106 28 88 1.32e-14 68.6
MS.gene28166.t1 AT4G26640 59.036 83 33 1 32 114 186 267 4.90e-29 108
MS.gene28166.t1 AT4G26640 53.226 62 28 1 45 106 28 88 1.32e-14 68.6
MS.gene28166.t1 AT5G49520 68.056 72 22 1 35 106 205 275 2.24e-28 106
MS.gene28166.t1 AT5G07100 57.831 83 34 1 24 106 114 195 2.36e-28 102
MS.gene28166.t1 AT5G07100 52.727 55 26 0 52 106 24 78 2.67e-14 66.2
MS.gene28166.t1 AT5G07100 57.831 83 34 1 24 106 114 195 2.36e-28 102
MS.gene28166.t1 AT5G07100 52.727 55 26 0 52 106 24 78 2.67e-14 66.2
MS.gene28166.t1 AT5G07100 57.831 83 34 1 24 106 114 195 2.36e-28 102
MS.gene28166.t1 AT5G07100 52.727 55 26 0 52 106 24 78 2.67e-14 66.2
MS.gene28166.t1 AT5G07100 57.831 83 34 1 24 106 114 195 2.36e-28 102
MS.gene28166.t1 AT5G07100 52.727 55 26 0 52 106 24 78 2.67e-14 66.2
MS.gene28166.t1 AT5G07100 57.831 83 34 1 24 106 207 288 6.18e-28 103
MS.gene28166.t1 AT5G07100 52.727 55 26 0 52 106 117 171 2.64e-14 67.4
MS.gene28166.t1 AT4G26640 55.556 90 32 2 24 106 307 395 1.11e-27 105
MS.gene28166.t1 AT4G26640 53.226 62 28 1 45 106 164 224 1.00e-14 69.3
MS.gene28166.t1 AT1G69310 60.494 81 27 2 26 106 122 197 1.58e-27 102
MS.gene28166.t1 AT4G26640 55.556 90 32 2 24 106 347 435 1.67e-27 105
MS.gene28166.t1 AT4G26640 53.226 62 28 1 45 106 204 264 1.17e-14 68.9
MS.gene28166.t1 AT1G29860 65.278 72 24 1 35 106 120 190 1.73e-27 102
MS.gene28166.t1 AT1G13960 61.333 75 28 1 32 106 237 310 1.87e-27 103
MS.gene28166.t1 AT1G13960 56.364 55 23 1 52 106 76 129 4.35e-14 67.0
MS.gene28166.t1 AT4G26640 55.556 90 32 2 24 106 275 363 2.36e-27 104
MS.gene28166.t1 AT4G26640 53.226 62 28 1 45 106 132 192 1.63e-14 68.6
MS.gene28166.t1 AT5G26170 65.217 69 23 1 38 106 100 167 4.13e-27 98.6
MS.gene28166.t1 AT2G47260 60.000 85 32 2 23 107 147 229 4.91e-27 102
MS.gene28166.t1 AT2G30250 64.000 75 26 1 32 106 309 382 4.95e-27 102
MS.gene28166.t1 AT2G30250 50.909 55 26 1 52 106 166 219 1.84e-11 59.7
MS.gene28166.t1 AT5G46350 65.714 70 23 1 37 106 169 237 1.19e-26 100
MS.gene28166.t1 AT5G56270 60.000 75 29 1 32 106 468 541 1.26e-26 103
MS.gene28166.t1 AT5G56270 54.545 55 24 1 52 106 273 326 7.61e-16 72.4
MS.gene28166.t1 AT3G01080 61.333 75 28 1 32 106 325 398 1.76e-26 102
MS.gene28166.t1 AT3G01080 56.364 55 23 1 52 106 205 258 2.21e-15 70.9
MS.gene28166.t1 AT1G13960 60.000 75 29 1 32 106 390 463 1.91e-26 102
MS.gene28166.t1 AT1G13960 56.364 55 23 1 52 106 229 282 8.67e-15 69.3
MS.gene28166.t1 AT2G38470 62.667 75 27 1 32 106 343 416 2.39e-26 102
MS.gene28166.t1 AT2G38470 54.545 55 24 1 52 106 184 237 1.83e-13 65.5
MS.gene28166.t1 AT3G01080 55.172 87 34 2 24 106 275 360 2.41e-26 101
MS.gene28166.t1 AT3G01080 56.364 55 23 1 52 106 167 220 3.54e-15 70.5
MS.gene28166.t1 AT5G13080 60.811 74 28 1 38 111 54 126 4.59e-26 95.1
MS.gene28166.t1 AT2G03340 60.000 75 29 1 32 106 396 469 6.32e-26 100
MS.gene28166.t1 AT2G03340 56.364 55 23 1 52 106 250 303 7.13e-14 66.6
MS.gene28166.t1 AT3G01970 61.429 70 26 1 38 107 52 120 6.48e-25 92.4
MS.gene28166.t1 AT4G26440 58.333 72 29 1 35 106 356 426 9.30e-25 97.8
MS.gene28166.t1 AT4G26440 53.571 56 25 1 52 107 178 232 1.19e-16 74.7
MS.gene28166.t1 AT2G46130 58.667 75 26 2 32 106 11 80 2.47e-24 89.7
MS.gene28166.t1 AT2G37260 62.903 62 23 0 45 106 260 321 3.31e-24 94.7
MS.gene28166.t1 AT2G37260 48.571 70 35 1 37 106 68 136 9.02e-14 66.2
MS.gene28166.t1 AT2G37260 62.903 62 23 0 45 106 262 323 3.56e-24 94.7
MS.gene28166.t1 AT2G37260 48.571 70 35 1 37 106 70 138 9.63e-14 66.2
MS.gene28166.t1 AT2G37260 62.903 62 23 0 45 106 342 403 6.02e-24 94.7
MS.gene28166.t1 AT2G37260 48.571 70 35 1 37 106 150 218 1.03e-13 66.2
MS.gene28166.t1 AT3G62340 59.036 83 31 2 25 107 94 173 1.20e-23 92.0
MS.gene28166.t1 AT5G64810 51.163 86 41 1 21 106 80 164 8.93e-23 88.2
MS.gene28166.t1 AT1G55600 45.783 83 45 0 24 106 279 361 1.30e-21 88.6
MS.gene28166.t1 AT2G04880 60.345 58 23 0 49 106 280 337 4.22e-21 87.0
MS.gene28166.t1 AT2G04880 56.140 57 24 1 50 106 109 164 1.18e-14 68.9
MS.gene28166.t1 AT2G04880 60.345 58 23 0 49 106 304 361 4.98e-21 87.0
MS.gene28166.t1 AT2G04880 56.140 57 24 1 50 106 109 164 1.19e-14 68.9
MS.gene28166.t1 AT2G21900 45.882 85 40 3 27 106 80 163 4.56e-19 78.6
MS.gene28166.t1 AT5G43290 47.945 73 38 0 38 110 100 172 1.58e-18 78.6
MS.gene28166.t1 AT2G23320 46.429 84 40 2 24 106 216 295 1.60e-18 79.0
MS.gene28166.t1 AT4G31550 45.238 84 41 2 24 106 222 301 3.33e-18 78.2
MS.gene28166.t1 AT2G25000 54.545 55 24 1 53 106 104 158 3.98e-18 76.6
MS.gene28166.t1 AT2G25000 54.545 55 24 1 53 106 104 158 3.98e-18 76.6
MS.gene28166.t1 AT4G31800 54.545 55 24 1 53 106 112 166 4.38e-18 77.0
MS.gene28166.t1 AT4G31550 45.238 84 41 2 24 106 221 300 5.34e-18 77.8
MS.gene28166.t1 AT2G25000 54.545 55 24 1 53 106 126 180 5.57e-18 76.6
MS.gene28166.t1 AT4G31800 54.545 55 24 1 53 106 177 231 6.62e-18 77.4
MS.gene28166.t1 AT4G30935 55.000 60 27 0 47 106 326 385 7.15e-18 78.2
MS.gene28166.t1 AT2G25000 54.545 55 24 1 53 106 147 201 7.75e-18 76.6
MS.gene28166.t1 AT5G15130 45.455 77 40 2 31 106 165 240 4.45e-17 75.9
MS.gene28166.t1 AT5G15130 45.455 77 40 2 31 106 207 282 4.98e-17 75.9
MS.gene28166.t1 AT1G80840 46.479 71 36 2 38 106 131 201 9.71e-17 73.9
MS.gene28166.t1 AT2G24570 44.048 84 42 2 24 106 219 298 2.18e-16 73.2
MS.gene28166.t1 AT5G28650 40.476 84 45 2 24 106 238 317 2.49e-16 73.2
MS.gene28166.t1 AT4G04450 38.462 104 51 2 4 106 162 253 2.63e-16 73.6
MS.gene28166.t1 AT2G30590 42.857 84 43 2 24 106 289 368 5.03e-16 72.8
MS.gene28166.t1 AT1G66560 50.000 60 27 1 52 108 103 162 5.85e-16 71.2
MS.gene28166.t1 AT1G66550 50.000 60 27 1 52 108 103 162 6.42e-16 71.2
MS.gene28166.t1 AT4G04450 38.462 104 51 2 4 106 256 347 7.31e-16 72.4
MS.gene28166.t1 AT1G66550 50.000 60 27 1 52 108 108 167 7.89e-16 70.9
MS.gene28166.t1 AT2G40740 45.205 73 36 2 40 109 162 233 8.84e-16 71.2
MS.gene28166.t1 AT3G01080 56.364 55 23 1 52 106 205 258 9.21e-16 71.6
MS.gene28166.t1 AT3G56400 38.095 84 43 2 34 108 96 179 1.04e-15 71.2
MS.gene28166.t1 AT2G40740 45.205 73 36 2 40 109 171 242 1.13e-15 71.2
MS.gene28166.t1 AT3G04670 39.286 84 46 2 24 106 238 317 1.43e-15 71.2
MS.gene28166.t1 AT1G62300 42.529 87 37 2 21 106 293 367 1.75e-15 71.2
MS.gene28166.t1 AT4G01720 38.532 109 54 3 10 106 187 294 2.22e-15 70.9
MS.gene28166.t1 AT4G22070 51.613 62 29 1 46 106 291 352 2.47e-15 70.9
MS.gene28166.t1 AT4G22070 51.613 62 29 1 46 106 291 352 2.47e-15 70.9
MS.gene28166.t1 AT4G22070 51.613 62 29 1 46 106 291 352 2.47e-15 70.9
MS.gene28166.t1 AT4G22070 51.613 62 29 1 46 106 291 352 2.47e-15 70.9
MS.gene28166.t1 AT5G01900 36.145 83 50 1 29 108 87 169 2.86e-15 69.7
MS.gene28166.t1 AT4G24240 40.476 84 45 2 24 106 257 336 5.85e-15 69.7
MS.gene28166.t1 AT1G68150 39.175 97 56 3 12 106 195 290 1.03e-14 68.9
MS.gene28166.t1 AT1G66600 47.541 61 29 1 51 108 102 162 1.32e-14 67.8
MS.gene28166.t1 AT1G18860 52.632 57 26 1 51 106 238 294 4.00e-14 67.4
MS.gene28166.t1 AT1G29280 44.262 61 33 1 47 106 69 129 6.11e-14 65.9
MS.gene28166.t1 AT4G01250 41.250 80 37 3 31 106 110 183 6.60e-14 66.2
MS.gene28166.t1 AT5G22570 46.774 62 30 1 53 111 111 172 1.07e-13 65.5
MS.gene28166.t1 AT1G30650 38.372 86 51 2 23 106 187 272 1.51e-13 65.9
MS.gene28166.t1 AT2G34830 38.372 86 51 2 23 106 194 279 1.88e-13 65.5
MS.gene28166.t1 AT2G34830 38.372 86 51 2 23 106 185 270 1.90e-13 65.5
MS.gene28166.t1 AT1G80590 45.763 59 29 1 53 108 86 144 1.94e-13 64.3
MS.gene28166.t1 AT1G69810 40.625 96 48 5 13 106 113 201 2.21e-13 65.1
MS.gene28166.t1 AT1G69810 44.000 75 39 3 34 106 186 259 2.47e-13 65.1
MS.gene28166.t1 AT4G23550 44.068 59 32 1 49 106 137 195 6.10e-13 63.5
MS.gene28166.t1 AT5G52830 44.444 63 34 1 46 107 159 221 7.06e-13 63.5
MS.gene28166.t1 AT2G40750 46.667 60 29 1 52 108 152 211 1.00e-12 63.2
MS.gene28166.t1 AT2G46400 42.623 61 32 1 51 108 103 163 1.07e-12 62.8
MS.gene28166.t1 AT4G11070 48.333 60 28 1 52 108 109 168 1.17e-12 62.8
MS.gene28166.t1 AT4G11070 48.333 60 28 1 52 108 141 200 1.32e-12 62.8
MS.gene28166.t1 AT5G24110 43.548 62 32 1 50 108 111 172 1.35e-12 62.8
MS.gene28166.t1 AT5G45050 47.273 55 28 1 53 106 1042 1096 8.29e-12 60.8
MS.gene28166.t1 AT4G23810 46.667 60 29 1 52 108 158 217 1.00e-11 60.5
MS.gene28166.t1 AT5G45050 47.273 55 28 1 53 106 1181 1235 1.06e-11 60.5
MS.gene28166.t1 AT5G45050 47.273 55 28 1 53 106 1153 1207 1.30e-11 60.5
MS.gene28166.t1 AT4G12020 63.415 41 14 1 32 72 622 661 2.27e-11 59.7
MS.gene28166.t1 AT4G12020 46.429 56 29 1 51 106 467 521 4.75e-11 58.9
MS.gene28166.t1 AT4G12020 63.415 41 14 1 32 72 622 661 2.29e-11 59.7
MS.gene28166.t1 AT4G12020 46.429 56 29 1 51 106 467 521 4.84e-11 58.9
MS.gene28166.t1 AT4G12020 63.415 41 14 1 32 72 555 594 2.31e-11 59.7
MS.gene28166.t1 AT4G12020 46.429 56 29 1 51 106 400 454 4.93e-11 58.9
MS.gene28166.t1 AT4G12020 63.415 41 14 1 32 72 622 661 2.31e-11 59.7
MS.gene28166.t1 AT4G12020 46.429 56 29 1 51 106 467 521 4.93e-11 58.9
MS.gene28166.t1 AT4G12020 63.415 41 14 1 32 72 622 661 2.34e-11 59.7
MS.gene28166.t1 AT4G12020 46.429 56 29 1 51 106 467 521 4.93e-11 58.9
MS.gene28166.t1 AT4G12020 63.415 41 14 1 32 72 622 661 2.89e-11 59.3
MS.gene28166.t1 AT4G12020 46.429 56 29 1 51 106 467 521 6.04e-11 58.5
MS.gene28166.t1 AT4G12020 63.415 41 14 1 32 72 622 661 2.89e-11 59.3
MS.gene28166.t1 AT4G12020 46.429 56 29 1 51 106 467 521 6.04e-11 58.5
MS.gene28166.t1 AT4G12020 63.415 41 14 1 32 72 622 661 2.92e-11 59.3
MS.gene28166.t1 AT4G12020 46.429 56 29 1 51 106 467 521 6.04e-11 58.5
MS.gene28166.t1 AT4G12020 63.415 41 14 1 32 72 622 661 3.06e-11 59.3
MS.gene28166.t1 AT4G12020 46.429 56 29 1 51 106 467 521 6.40e-11 58.5
MS.gene28166.t1 AT4G12020 63.415 41 14 1 32 72 622 661 3.06e-11 59.3
MS.gene28166.t1 AT4G12020 46.429 56 29 1 51 106 467 521 6.40e-11 58.5
MS.gene28166.t1 AT3G58710 45.455 55 29 1 53 106 72 126 8.41e-11 57.4
MS.gene28166.t1 AT3G58710 45.455 55 29 1 53 106 71 125 8.89e-11 57.4

Find 24 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCATCATGATAATCATTT+GGG 0.306049 4.4:+9590840 MS.gene28166:CDS
GGTTACAAGTGGAGGAAGTA+TGG 0.371030 4.4:+9590969 MS.gene28166:CDS
AGATCATCATGATAATCATT+TGG 0.374995 4.4:+9590839 MS.gene28166:CDS
AATAATAGTGGTAAAAGAAA+TGG 0.401015 4.4:+9590813 MS.gene28166:CDS
TATGTGGTTATTACCATCCT+TGG 0.403815 4.4:-9591843 None:intergenic
AGTAATTGCATGAATAATAG+TGG 0.478312 4.4:+9590801 None:intergenic
CATGAAAATGAAGAAAATGA+AGG 0.488233 4.4:+9590875 MS.gene28166:CDS
TACATGTCTTCCTTCATATG+TGG 0.519036 4.4:-9591859 None:intergenic
ATGGTAATAACCACATATGA+AGG 0.520270 4.4:+9591849 MS.gene28166:CDS
ATGAAAATGAAGAAAATGAA+GGG 0.532779 4.4:+9590876 MS.gene28166:CDS
GATGTGGATGTGTTGGATGA+TGG 0.559861 4.4:+9590948 MS.gene28166:CDS
GAAAGAAAGTGAGAGAGCCT+AGG 0.575300 4.4:+9590901 MS.gene28166:CDS
GAGTACTGATGTGGATGTGT+TGG 0.603265 4.4:+9590941 MS.gene28166:CDS
TAAAGAACACACAACATCCC+AGG 0.608791 4.4:+9591003 MS.gene28166:CDS
AGCGCTTAGCTGAAGATCCA+AGG 0.615258 4.4:+9591826 MS.gene28166:CDS
ATCATCATGATAATCATTTG+GGG 0.627967 4.4:+9590841 MS.gene28166:CDS
TGGATGATGGTTACAAGTGG+AGG 0.635586 4.4:+9590961 MS.gene28166:CDS
GACAATTCTCTTGTGTGCAA+CGG 0.637189 4.4:-9591785 None:intergenic
CTTAGCTGAAGATCCAAGGA+TGG 0.650835 4.4:+9591830 MS.gene28166:CDS
TCATCATGATAATCATTTGG+GGG 0.652014 4.4:+9590842 MS.gene28166:CDS
AATGTCTTGAAGCAAAACCT+AGG 0.659684 4.4:-9590918 None:intergenic
TGTTGGATGATGGTTACAAG+TGG 0.666245 4.4:+9590958 MS.gene28166:CDS
TTGTCGTGTAAAGAAACGTG+TGG 0.671845 4.4:+9591803 MS.gene28166:CDS
CAAGACATTGAGTACTGATG+TGG 0.685676 4.4:+9590932 MS.gene28166:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATGAAAAAAATAATAATGA+AGG - chr4.4:9591402-9591421 None:intergenic 15.0%
!! TATATCAACTAAAAATTCAA+GGG + chr4.4:9591026-9591045 MS.gene28166:intron 15.0%
!! AAATAATAATGAAGGAAAGA+AGG - chr4.4:9591394-9591413 None:intergenic 20.0%
!! AATAATAATGAAGGAAAGAA+GGG - chr4.4:9591393-9591412 None:intergenic 20.0%
!! AATAATAGTGGTAAAAGAAA+TGG + chr4.4:9590813-9590832 MS.gene28166:CDS 20.0%
!! AATAATTGTCACATTTCATT+TGG + chr4.4:9591094-9591113 MS.gene28166:intron 20.0%
!! ATATACTCTATAACATTTGA+GGG - chr4.4:9591591-9591610 None:intergenic 20.0%
!! ATGAAAATGAAGAAAATGAA+GGG + chr4.4:9590876-9590895 MS.gene28166:CDS 20.0%
!! ATTATATGAGACAATTAACT+TGG - chr4.4:9591737-9591756 None:intergenic 20.0%
!! GTATATCAACTAAAAATTCA+AGG + chr4.4:9591025-9591044 MS.gene28166:intron 20.0%
!! TATATACTCTATAACATTTG+AGG - chr4.4:9591592-9591611 None:intergenic 20.0%
!!! AATTTTTAGTTGATATACCT+GGG - chr4.4:9591023-9591042 None:intergenic 20.0%
!!! ATTAATTCTTTGTGTTTTGA+AGG + chr4.4:9591669-9591688 MS.gene28166:intron 20.0%
!!! GTTTTTAACGTACTTTATTT+TGG + chr4.4:9591696-9591715 MS.gene28166:intron 20.0%
! AGAAAAATAGCATCAAGAAT+GGG - chr4.4:9591320-9591339 None:intergenic 25.0%
! AGATCATCATGATAATCATT+TGG + chr4.4:9590839-9590858 MS.gene28166:CDS 25.0%
! ATCATCATGATAATCATTTG+GGG + chr4.4:9590841-9590860 MS.gene28166:CDS 25.0%
! ATGGATACTGTAATATTTAG+AGG - chr4.4:9591193-9591212 None:intergenic 25.0%
! ATGGTCAAATGTAGTTATTA+TGG + chr4.4:9591218-9591237 MS.gene28166:intron 25.0%
! ATTACAGTATCCATGAAAAA+TGG + chr4.4:9591199-9591218 MS.gene28166:intron 25.0%
! CATGAAAATGAAGAAAATGA+AGG + chr4.4:9590875-9590894 MS.gene28166:CDS 25.0%
! GATCATCATGATAATCATTT+GGG + chr4.4:9590840-9590859 MS.gene28166:CDS 25.0%
! TAGAAAAATAGCATCAAGAA+TGG - chr4.4:9591321-9591340 None:intergenic 25.0%
! TGGTCAAATGTAGTTATTAT+GGG + chr4.4:9591219-9591238 MS.gene28166:intron 25.0%
!! ATATGCAAAAGAAACTTGTT+CGG + chr4.4:9591518-9591537 MS.gene28166:intron 25.0%
!! CTTCATTTTCTTCATTTTCA+TGG - chr4.4:9590877-9590896 None:intergenic 25.0%
!! GTATATGTATGTTTTCTACT+AGG + chr4.4:9591985-9592004 MS.gene28166:intron 25.0%
!!! ACTGATTAGCTTTAATTTAC+TGG + chr4.4:9591425-9591444 MS.gene28166:intron 25.0%
!!! GAATTTTTAGTTGATATACC+TGG - chr4.4:9591024-9591043 None:intergenic 25.0%
AATAGCCATACATCACATAA+AGG - chr4.4:9591648-9591667 None:intergenic 30.0%
ATGGTAATAACCACATATGA+AGG + chr4.4:9591849-9591868 MS.gene28166:CDS 30.0%
CTCAATCTGACAATTTCTTA+TGG + chr4.4:9591916-9591935 MS.gene28166:intron 30.0%
GGTCAAATGTAGTTATTATG+GGG + chr4.4:9591220-9591239 MS.gene28166:intron 30.0%
TACTGTAATATTTAGAGGCA+CGG - chr4.4:9591188-9591207 None:intergenic 30.0%
TCATCATGATAATCATTTGG+GGG + chr4.4:9590842-9590861 MS.gene28166:CDS 30.0%
!! CTACATTTGACCATTTTTCA+TGG - chr4.4:9591212-9591231 None:intergenic 30.0%
!! TAGCTTTAATTTACTGGCTT+CGG + chr4.4:9591431-9591450 MS.gene28166:intron 30.0%
AATGTCTTGAAGCAAAACCT+AGG - chr4.4:9590921-9590940 None:intergenic 35.0%
CAAATGTAGTTATTATGGGG+TGG + chr4.4:9591223-9591242 MS.gene28166:intron 35.0%
GAGAGAGAACATATGTAAGT+TGG - chr4.4:9591359-9591378 None:intergenic 35.0%
TACATGTCTTCCTTCATATG+TGG - chr4.4:9591862-9591881 None:intergenic 35.0%
TATGTGGTTATTACCATCCT+TGG - chr4.4:9591846-9591865 None:intergenic 35.0%
TTGAGAGTCTTCAAGATCAT+TGG - chr4.4:9591895-9591914 None:intergenic 35.0%
TTGCATATGCATGTAGTGAA+AGG - chr4.4:9591506-9591525 None:intergenic 35.0%
!! AGCTTTAATTTACTGGCTTC+GGG + chr4.4:9591432-9591451 MS.gene28166:intron 35.0%
AGGAAAAGTGATCACATGTG+AGG - chr4.4:9591618-9591637 None:intergenic 40.0%
ATGTAGTTATTATGGGGTGG+AGG + chr4.4:9591226-9591245 MS.gene28166:intron 40.0%
GAATGGGACACAATGAATCA+AGG - chr4.4:9591304-9591323 None:intergenic 40.0%
GACAATTCTCTTGTGTGCAA+CGG - chr4.4:9591788-9591807 None:intergenic 40.0%
GAGTCTTCAAGATCATTGGA+TGG - chr4.4:9591891-9591910 None:intergenic 40.0%
GTGGACCTTTATGTGATGTA+TGG + chr4.4:9591640-9591659 MS.gene28166:intron 40.0%
TAAAGAACACACAACATCCC+AGG + chr4.4:9591003-9591022 MS.gene28166:CDS 40.0%
TAATGAAGGAAAGAAGGGTG+TGG - chr4.4:9591388-9591407 None:intergenic 40.0%
TTGTCGTGTAAAGAAACGTG+TGG + chr4.4:9591803-9591822 MS.gene28166:CDS 40.0%
! TGTTGGATGATGGTTACAAG+TGG + chr4.4:9590958-9590977 MS.gene28166:CDS 40.0%
!! ATGTGATCACTTTTCCTAGG+TGG + chr4.4:9591621-9591640 MS.gene28166:intron 40.0%
!! CAAGACATTGAGTACTGATG+TGG + chr4.4:9590932-9590951 MS.gene28166:CDS 40.0%
!! CACATGTGATCACTTTTCCT+AGG + chr4.4:9591618-9591637 MS.gene28166:intron 40.0%
!! TTAATTTACTGGCTTCGGGA+AGG + chr4.4:9591436-9591455 MS.gene28166:intron 40.0%
CATCACATAAAGGTCCACCT+AGG - chr4.4:9591638-9591657 None:intergenic 45.0%
CTTAGCTGAAGATCCAAGGA+TGG + chr4.4:9591830-9591849 MS.gene28166:CDS 45.0%
GAAAGAAAGTGAGAGAGCCT+AGG + chr4.4:9590901-9590920 MS.gene28166:CDS 45.0%
GATGTGGATGTGTTGGATGA+TGG + chr4.4:9590948-9590967 MS.gene28166:CDS 45.0%
GGTTACAAGTGGAGGAAGTA+TGG + chr4.4:9590969-9590988 MS.gene28166:CDS 45.0%
! TGGATGATGGTTACAAGTGG+AGG + chr4.4:9590961-9590980 MS.gene28166:CDS 45.0%
!! GAGTACTGATGTGGATGTGT+TGG + chr4.4:9590941-9590960 MS.gene28166:CDS 45.0%
AGCGCTTAGCTGAAGATCCA+AGG + chr4.4:9591826-9591845 MS.gene28166:CDS 50.0%
! GGAAAGAAGGGTGTGGAGAT+TGG - chr4.4:9591381-9591400 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 9590810 9592039 9590810 ID=MS.gene28166
chr4.4 mRNA 9590810 9592039 9590810 ID=MS.gene28166.t1;Parent=MS.gene28166
chr4.4 exon 9590810 9591024 9590810 ID=MS.gene28166.t1.exon1;Parent=MS.gene28166.t1
chr4.4 CDS 9590810 9591024 9590810 ID=cds.MS.gene28166.t1;Parent=MS.gene28166.t1
chr4.4 exon 9591776 9591878 9591776 ID=MS.gene28166.t1.exon2;Parent=MS.gene28166.t1
chr4.4 CDS 9591776 9591878 9591776 ID=cds.MS.gene28166.t1;Parent=MS.gene28166.t1
chr4.4 exon 9592007 9592039 9592007 ID=MS.gene28166.t1.exon3;Parent=MS.gene28166.t1
chr4.4 CDS 9592007 9592039 9592007 ID=cds.MS.gene28166.t1;Parent=MS.gene28166.t1
Gene Sequence

>MS.gene28166

ATGAATAATAGTGGTAAAAGAAATGGAGTAGATCATCATGATAATCATTTGGGGGTTTCTGCTACCATGAAAATGAAGAAAATGAAGGGAAGAAAGAAAGTGAGAGAGCCTAGGTTTTGCTTCAAGACATTGAGTACTGATGTGGATGTGTTGGATGATGGTTACAAGTGGAGGAAGTATGGACAAAAAGTTGTAAAGAACACACAACATCCCAGGTATATCAACTAAAAATTCAAGGGTTCTCTTTTTTTGTCTTACTTTGATAATTACTCAATTAATGTTGTAATAATTGTCACATTTCATTTGGAAAAAAAAAAAATCAAAAAGTTTGTTGCTTTTAATTTTAATATAGTTTTAATTGATTTTTTTTTCTAACCGTGCCTCTAAATATTACAGTATCCATGAAAAATGGTCAAATGTAGTTATTATGGGGTGGAGGAAGTGATAATTTGAAAGAATTAATATATTTGATTTGATACTATATATTGAAACCTTGATTCATTGTGTCCCATTCTTGATGCTATTTTTCTAGATAAATAGCATTTTCCAACTTACATATGTTCTCTCTCCAATCTCCACACCCTTCTTTCCTTCATTATTATTTTTTTCATCACAACTGATTAGCTTTAATTTACTGGCTTCGGGAAGGTTTTAATATTTCTCTGAGTAATAACGTAAAGATAATTAAAGATTCCTTTCACTACATGCATATGCAAAAGAAACTTGTTCGGAATGATACTAATTTGTCAATGTTATGAGTTATGACTAATAATTATGACCCTCAAATGTTATAGAGTATATATATCCTCACATGTGATCACTTTTCCTAGGTGGACCTTTATGTGATGTATGGCTATTGATTAATTCTTTGTGTTTTGAAGGTTTTGTTTTTAACGTACTTTATTTTGGACTGCTGATTAATTACCAAGTTAATTGTCTCATATAATGAATATTAAAAATGTGTAGAAGCTATTACCGTTGCACACAAGAGAATTGTCGTGTAAAGAAACGTGTGGAGCGCTTAGCTGAAGATCCAAGGATGGTAATAACCACATATGAAGGAAGACATGTACATTCTCCATCCAATGATCTTGAAGACTCTCAAACTCAATCTGACAATTTCTTATGGTAGTTTATACACAAACATGTATAATAATGATGCTACATTTATAAATGTATATGTATGTTTTCTACTAGGTGTGCTTTGTCGAGATGAAAAAGATCAAATAA
Protein sequence

>MS.gene28166.t1

MNNSGKRNGVDHHDNHLGVSATMKMKKMKGRKKVREPRFCFKTLSTDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRVERLAEDPRMVITTYEGRHVCFVEMKKIK