Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28232.t1 | AES69260.2 | 93.2 | 384 | 23 | 3 | 1 | 381 | 2 | 385 | 3.00E-195 | 691 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28232.t1 | Q9FME3 | 37.4 | 385 | 192 | 14 | 6 | 374 | 8 | 359 | 1.1e-41 | 172.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28232.t1 | G7IZC4 | 93.2 | 384 | 23 | 3 | 1 | 381 | 2 | 385 | 2.2e-195 | 691.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene28232.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060372 | MS.gene28232 | 0.802131 | 6.49E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28232.t1 | MTR_3g026050 | 96.615 | 384 | 10 | 3 | 1 | 381 | 2 | 385 | 0.0 | 741 |
| MS.gene28232.t1 | MTR_4g109660 | 72.131 | 122 | 30 | 3 | 2 | 122 | 4 | 122 | 1.05e-51 | 175 |
| MS.gene28232.t1 | MTR_7g015010 | 47.917 | 192 | 76 | 7 | 36 | 224 | 39 | 209 | 1.04e-42 | 152 |
| MS.gene28232.t1 | MTR_6g015350 | 64.356 | 101 | 33 | 2 | 36 | 135 | 31 | 129 | 9.12e-36 | 133 |
| MS.gene28232.t1 | MTR_8g463380 | 58.824 | 68 | 28 | 0 | 50 | 117 | 48 | 115 | 3.36e-20 | 92.0 |
| MS.gene28232.t1 | MTR_2g090960 | 58.824 | 68 | 28 | 0 | 50 | 117 | 18 | 85 | 1.97e-19 | 88.6 |
| MS.gene28232.t1 | MTR_2g078200 | 57.353 | 68 | 29 | 0 | 50 | 117 | 14 | 81 | 4.60e-19 | 87.0 |
| MS.gene28232.t1 | MTR_4g079580 | 33.188 | 229 | 109 | 9 | 50 | 274 | 16 | 204 | 1.20e-18 | 86.3 |
| MS.gene28232.t1 | MTR_4g111935 | 33.099 | 142 | 87 | 2 | 57 | 195 | 133 | 269 | 6.42e-14 | 72.8 |
| MS.gene28232.t1 | MTR_6g017055 | 51.724 | 58 | 28 | 0 | 57 | 114 | 127 | 184 | 2.63e-12 | 68.2 |
| MS.gene28232.t1 | MTR_7g018500 | 49.123 | 57 | 29 | 0 | 58 | 114 | 122 | 178 | 2.47e-11 | 65.1 |
| MS.gene28232.t1 | MTR_1g103380 | 48.333 | 60 | 31 | 0 | 55 | 114 | 200 | 259 | 4.97e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28232.t1 | AT5G60970 | 45.487 | 277 | 101 | 12 | 39 | 298 | 46 | 289 | 4.30e-53 | 180 |
| MS.gene28232.t1 | AT5G08070 | 76.667 | 90 | 21 | 0 | 39 | 128 | 16 | 105 | 1.69e-42 | 149 |
| MS.gene28232.t1 | AT5G08070 | 76.667 | 90 | 21 | 0 | 39 | 128 | 16 | 105 | 1.69e-42 | 149 |
| MS.gene28232.t1 | AT3G02150 | 70.213 | 94 | 25 | 2 | 43 | 135 | 61 | 152 | 2.43e-39 | 142 |
| MS.gene28232.t1 | AT3G02150 | 70.213 | 94 | 25 | 2 | 43 | 135 | 61 | 152 | 6.59e-39 | 142 |
| MS.gene28232.t1 | AT1G30210 | 56.842 | 95 | 38 | 1 | 23 | 117 | 20 | 111 | 1.93e-27 | 110 |
| MS.gene28232.t1 | AT1G30210 | 56.842 | 95 | 38 | 1 | 23 | 117 | 20 | 111 | 1.93e-27 | 110 |
| MS.gene28232.t1 | AT4G18390 | 63.889 | 72 | 26 | 0 | 46 | 117 | 32 | 103 | 3.12e-25 | 105 |
| MS.gene28232.t1 | AT4G18390 | 63.889 | 72 | 26 | 0 | 46 | 117 | 32 | 103 | 3.12e-25 | 105 |
| MS.gene28232.t1 | AT1G53230 | 60.294 | 68 | 27 | 0 | 50 | 117 | 43 | 110 | 1.90e-21 | 95.1 |
| MS.gene28232.t1 | AT1G53230 | 60.294 | 68 | 27 | 0 | 50 | 117 | 43 | 110 | 1.90e-21 | 95.1 |
| MS.gene28232.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 50 | 117 | 39 | 106 | 6.77e-21 | 94.0 |
| MS.gene28232.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 50 | 117 | 39 | 106 | 6.77e-21 | 94.0 |
| MS.gene28232.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 50 | 117 | 39 | 106 | 6.77e-21 | 94.0 |
| MS.gene28232.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 50 | 117 | 39 | 106 | 6.77e-21 | 94.0 |
| MS.gene28232.t1 | AT2G31070 | 60.000 | 65 | 26 | 0 | 50 | 114 | 23 | 87 | 5.47e-19 | 87.8 |
| MS.gene28232.t1 | AT1G68800 | 49.254 | 67 | 34 | 0 | 48 | 114 | 104 | 170 | 2.93e-14 | 73.9 |
| MS.gene28232.t1 | AT1G68800 | 49.254 | 67 | 34 | 0 | 48 | 114 | 104 | 170 | 3.18e-14 | 73.6 |
| MS.gene28232.t1 | AT1G67260 | 44.286 | 70 | 39 | 0 | 45 | 114 | 76 | 145 | 7.27e-14 | 72.4 |
| MS.gene28232.t1 | AT1G67260 | 44.286 | 70 | 39 | 0 | 45 | 114 | 76 | 145 | 7.27e-14 | 72.4 |
| MS.gene28232.t1 | AT1G67260 | 44.286 | 70 | 39 | 0 | 45 | 114 | 76 | 145 | 7.93e-14 | 72.4 |
| MS.gene28232.t1 | AT3G18550 | 41.573 | 89 | 51 | 1 | 58 | 145 | 150 | 238 | 4.10e-12 | 67.8 |
| MS.gene28232.t1 | AT3G18550 | 41.573 | 89 | 51 | 1 | 58 | 145 | 150 | 238 | 4.10e-12 | 67.8 |
| MS.gene28232.t1 | AT3G18550 | 41.573 | 89 | 51 | 1 | 58 | 145 | 150 | 238 | 5.24e-12 | 67.4 |
| MS.gene28232.t1 | AT3G18550 | 50.877 | 57 | 28 | 0 | 58 | 114 | 150 | 206 | 1.23e-11 | 66.2 |
Find 72 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGGCAAGGTCAAAATTT+TGG | 0.095121 | 3.3:+17864421 | MS.gene28232:CDS |
| CTTGAAACTCTCACAATTCT+TGG | 0.174999 | 3.3:-17864054 | None:intergenic |
| TCAACTGGATTGTTCATAAA+AGG | 0.202574 | 3.3:-17864837 | None:intergenic |
| ATTCCAACAAATGTGGAATT+AGG | 0.207117 | 3.3:-17864390 | None:intergenic |
| ACCATTTAGCTCCAAGCTTC+TGG | 0.216080 | 3.3:+17864989 | MS.gene28232:CDS |
| TTGCACTTCCCATTTCCTTT+TGG | 0.260633 | 3.3:+17864747 | MS.gene28232:CDS |
| CCATTTCCATTACTTTGATT+TGG | 0.264187 | 3.3:-17864723 | None:intergenic |
| AGCAAAGTTTGTACAATAAG+AGG | 0.267106 | 3.3:+17864102 | MS.gene28232:CDS |
| TGTTGGAATTCAAAATCTTA+TGG | 0.268566 | 3.3:+17864404 | MS.gene28232:CDS |
| AAATGGTTGAATTGTATTCT+TGG | 0.276038 | 3.3:-17864867 | None:intergenic |
| TTGAGTTTATGAACTGAAAA+TGG | 0.288622 | 3.3:-17864884 | None:intergenic |
| AGTTTGTCTTTATCTCAATT+TGG | 0.291167 | 3.3:+17864660 | MS.gene28232:CDS |
| CTTCAAGACAAACTTGGTTT+AGG | 0.315460 | 3.3:+17864180 | MS.gene28232:CDS |
| TGTGAATTTCCAAAAGGAAA+TGG | 0.323985 | 3.3:-17864756 | None:intergenic |
| GTGAGAGTTTCAAGAACATT+TGG | 0.341396 | 3.3:+17864063 | MS.gene28232:CDS |
| TCCAGAAGCTTGGAGCTAAA+TGG | 0.342186 | 3.3:-17864990 | None:intergenic |
| GATCCTAATTCCACATTTGT+TGG | 0.359932 | 3.3:+17864387 | MS.gene28232:CDS |
| GGAAATTCACAATTATTGTT+TGG | 0.370099 | 3.3:+17864768 | MS.gene28232:CDS |
| AACCAATCAATTACTTTACT+TGG | 0.384521 | 3.3:-17864207 | None:intergenic |
| GATCTACTTGTTGATGAGAT+TGG | 0.388449 | 3.3:-17864701 | None:intergenic |
| GCTTCTCATGAACTTTCTCT+TGG | 0.400555 | 3.3:+17864354 | MS.gene28232:CDS |
| GTGAATTTCCAAAAGGAAAT+GGG | 0.404629 | 3.3:-17864755 | None:intergenic |
| AAGAGAGTACTTTAGTGAAA+AGG | 0.409808 | 3.3:+17864479 | MS.gene28232:CDS |
| AACCAAGTAAAGTAATTGAT+TGG | 0.421109 | 3.3:+17864205 | MS.gene28232:CDS |
| ATTGATCATGAAAAGGAAGT+AGG | 0.421778 | 3.3:-17864320 | None:intergenic |
| AGAAGGAGGTGATACTAGTA+TGG | 0.422169 | 3.3:+17863960 | MS.gene28232:CDS |
| ATTGTTAAAATCCAGAAGCT+TGG | 0.429623 | 3.3:-17865000 | None:intergenic |
| GAGCTAAATGGTACCGGAAA+AGG | 0.430903 | 3.3:-17864978 | None:intergenic |
| TAAGAGGGTTAAGAGATAGA+AGG | 0.432238 | 3.3:+17864118 | MS.gene28232:CDS |
| TCTCAATTTGGAAGTAGTAA+TGG | 0.439801 | 3.3:+17864672 | MS.gene28232:CDS |
| GTGGAATTAGGATCATATAA+AGG | 0.445075 | 3.3:-17864378 | None:intergenic |
| CCAAATCAAAGTAATGGAAA+TGG | 0.449767 | 3.3:+17864723 | MS.gene28232:CDS |
| GAACATTTGGAGGCAAAGAT+AGG | 0.452527 | 3.3:+17864076 | MS.gene28232:CDS |
| GGTACCGGAAAAGGTCTAAC+CGG | 0.467145 | 3.3:-17864969 | None:intergenic |
| TGAAATTGTGAAAAGCTTTG+AGG | 0.469301 | 3.3:-17864279 | None:intergenic |
| TCATATAATTGAATTGCTGT+TGG | 0.472619 | 3.3:-17864156 | None:intergenic |
| TTACTTGATTGATCATGAAA+AGG | 0.475662 | 3.3:-17864327 | None:intergenic |
| TTGATCATGAAAAGGAAGTA+GGG | 0.484366 | 3.3:-17864319 | None:intergenic |
| TGATGTACTTGAAGGTGCCT+TGG | 0.486020 | 3.3:-17864001 | None:intergenic |
| CAATAACAGTAGTAACCAAC+CGG | 0.490044 | 3.3:+17865019 | MS.gene28232:CDS |
| GGTTAAGAGATAGAAGGATA+AGG | 0.491272 | 3.3:+17864124 | MS.gene28232:CDS |
| TCACTCATTCAATTCACCTC+CGG | 0.496606 | 3.3:+17864950 | MS.gene28232:CDS |
| AATAATTGTGAATTTCCAAA+AGG | 0.497299 | 3.3:-17864762 | None:intergenic |
| CATTGTCTTGATGTACTTGA+AGG | 0.499610 | 3.3:-17864009 | None:intergenic |
| TTGAATGAGTGATGAAAAGA+TGG | 0.505850 | 3.3:-17864939 | None:intergenic |
| GTAGATCCAAATCAAAGTAA+TGG | 0.511396 | 3.3:+17864717 | MS.gene28232:CDS |
| GACATAGATTCAAGGACTAA+AGG | 0.516620 | 3.3:+17864444 | MS.gene28232:CDS |
| AAAGATGGAATGAGAGGATG+AGG | 0.519478 | 3.3:-17864924 | None:intergenic |
| TATGATCTTCAAGACAAACT+TGG | 0.534396 | 3.3:+17864174 | MS.gene28232:CDS |
| AGAGTTTCAAGAACATTTGG+AGG | 0.534864 | 3.3:+17864066 | MS.gene28232:CDS |
| AATGAGGAAGAAAATCAAGT+TGG | 0.535305 | 3.3:+17864519 | MS.gene28232:CDS |
| AAATTAGAATGAGTCTCCAT+AGG | 0.541479 | 3.3:-17864591 | None:intergenic |
| AGCTTGGAGCTAAATGGTAC+CGG | 0.542441 | 3.3:-17864984 | None:intergenic |
| AATTAGAATGAGTCTCCATA+GGG | 0.543229 | 3.3:-17864590 | None:intergenic |
| CTTTGAGGAAATTGAAGTGG+AGG | 0.544948 | 3.3:-17864264 | None:intergenic |
| GCAAAGTTTGTACAATAAGA+GGG | 0.549035 | 3.3:+17864103 | MS.gene28232:CDS |
| ACAAACTAGAAGCTTCTGAA+TGG | 0.549145 | 3.3:-17864644 | None:intergenic |
| AGTAGGGTTTGTGAATGAAG+AGG | 0.550409 | 3.3:-17864303 | None:intergenic |
| AAGCTTTGAGGAAATTGAAG+TGG | 0.558131 | 3.3:-17864267 | None:intergenic |
| TTTGAGGAAATTGAAGTGGA+GGG | 0.564714 | 3.3:-17864263 | None:intergenic |
| ACTTTAGTGAAAAGGATAAG+TGG | 0.567465 | 3.3:+17864487 | MS.gene28232:CDS |
| GATGATGTAGTAGAAGAAGA+AGG | 0.577487 | 3.3:-17864792 | None:intergenic |
| GAATTCAAAATCTTATGGCA+AGG | 0.581024 | 3.3:+17864409 | MS.gene28232:CDS |
| CGACGAGCACTATCATCATC+CGG | 0.584897 | 3.3:-17865038 | None:intergenic |
| TAAGTGGATCAAAACAAATG+AGG | 0.592313 | 3.3:+17864503 | MS.gene28232:CDS |
| AATTATCAAGCAAAGCAAGA+AGG | 0.601285 | 3.3:+17863943 | MS.gene28232:CDS |
| TGATGAAAAGATGGAATGAG+AGG | 0.628080 | 3.3:-17864930 | None:intergenic |
| ATGATGGCAAGTTCAAGAGA+AGG | 0.630706 | 3.3:+17863919 | None:intergenic |
| TATCAAGCAAAGCAAGAAGG+AGG | 0.649027 | 3.3:+17863946 | MS.gene28232:CDS |
| GAGCACTATCATCATCCGGT+TGG | 0.656995 | 3.3:-17865034 | None:intergenic |
| CTTCAAGTACATCAAGACAA+TGG | 0.691220 | 3.3:+17864010 | MS.gene28232:CDS |
| ACCGGAAAAGGTCTAACCGG+AGG | 0.695953 | 3.3:-17864966 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTGTGAATTTCCAAA+AGG | - | chr3.3:17864765-17864784 | None:intergenic | 20.0% |
| !!! | TAATATTGAGAAATTTTCCA+AGG | + | chr3.3:17863984-17864003 | MS.gene28232:CDS | 20.0% |
| ! | AAATGGTTGAATTGTATTCT+TGG | - | chr3.3:17864870-17864889 | None:intergenic | 25.0% |
| ! | AACCAAGTAAAGTAATTGAT+TGG | + | chr3.3:17864205-17864224 | MS.gene28232:CDS | 25.0% |
| ! | AACCAATCAATTACTTTACT+TGG | - | chr3.3:17864210-17864229 | None:intergenic | 25.0% |
| ! | AGTTTGTCTTTATCTCAATT+TGG | + | chr3.3:17864660-17864679 | MS.gene28232:CDS | 25.0% |
| ! | GGAAATTCACAATTATTGTT+TGG | + | chr3.3:17864768-17864787 | MS.gene28232:CDS | 25.0% |
| ! | TCATATAATTGAATTGCTGT+TGG | - | chr3.3:17864159-17864178 | None:intergenic | 25.0% |
| ! | TGTTGGAATTCAAAATCTTA+TGG | + | chr3.3:17864404-17864423 | MS.gene28232:CDS | 25.0% |
| ! | TTACTTGATTGATCATGAAA+AGG | - | chr3.3:17864330-17864349 | None:intergenic | 25.0% |
| ! | TTGAGTTTATGAACTGAAAA+TGG | - | chr3.3:17864887-17864906 | None:intergenic | 25.0% |
| !! | ATTTTGAATTCCAACAAATG+TGG | - | chr3.3:17864400-17864419 | None:intergenic | 25.0% |
| AAATTAGAATGAGTCTCCAT+AGG | - | chr3.3:17864594-17864613 | None:intergenic | 30.0% | |
| AATGAGGAAGAAAATCAAGT+TGG | + | chr3.3:17864519-17864538 | MS.gene28232:CDS | 30.0% | |
| AATTAGAATGAGTCTCCATA+GGG | - | chr3.3:17864593-17864612 | None:intergenic | 30.0% | |
| AATTATCAAGCAAAGCAAGA+AGG | + | chr3.3:17863943-17863962 | MS.gene28232:CDS | 30.0% | |
| ACTTTAGTGAAAAGGATAAG+TGG | + | chr3.3:17864487-17864506 | MS.gene28232:CDS | 30.0% | |
| AGCAAAGTTTGTACAATAAG+AGG | + | chr3.3:17864102-17864121 | MS.gene28232:CDS | 30.0% | |
| ATTCCAACAAATGTGGAATT+AGG | - | chr3.3:17864393-17864412 | None:intergenic | 30.0% | |
| ATTGATCATGAAAAGGAAGT+AGG | - | chr3.3:17864323-17864342 | None:intergenic | 30.0% | |
| ATTGTTAAAATCCAGAAGCT+TGG | - | chr3.3:17865003-17865022 | None:intergenic | 30.0% | |
| CCATTTCCATTACTTTGATT+TGG | - | chr3.3:17864726-17864745 | None:intergenic | 30.0% | |
| GAATTCAAAATCTTATGGCA+AGG | + | chr3.3:17864409-17864428 | MS.gene28232:CDS | 30.0% | |
| GCAAAGTTTGTACAATAAGA+GGG | + | chr3.3:17864103-17864122 | MS.gene28232:CDS | 30.0% | |
| GTAGATCCAAATCAAAGTAA+TGG | + | chr3.3:17864717-17864736 | MS.gene28232:CDS | 30.0% | |
| GTGAATTTCCAAAAGGAAAT+GGG | - | chr3.3:17864758-17864777 | None:intergenic | 30.0% | |
| GTGGAATTAGGATCATATAA+AGG | - | chr3.3:17864381-17864400 | None:intergenic | 30.0% | |
| TAAGTGGATCAAAACAAATG+AGG | + | chr3.3:17864503-17864522 | MS.gene28232:CDS | 30.0% | |
| TATGATCTTCAAGACAAACT+TGG | + | chr3.3:17864174-17864193 | MS.gene28232:CDS | 30.0% | |
| TCAACTGGATTGTTCATAAA+AGG | - | chr3.3:17864840-17864859 | None:intergenic | 30.0% | |
| TCTCAATTTGGAAGTAGTAA+TGG | + | chr3.3:17864672-17864691 | MS.gene28232:CDS | 30.0% | |
| TGAAATTGTGAAAAGCTTTG+AGG | - | chr3.3:17864282-17864301 | None:intergenic | 30.0% | |
| TGTGAATTTCCAAAAGGAAA+TGG | - | chr3.3:17864759-17864778 | None:intergenic | 30.0% | |
| TTGAATGAGTGATGAAAAGA+TGG | - | chr3.3:17864942-17864961 | None:intergenic | 30.0% | |
| TTGATCATGAAAAGGAAGTA+GGG | - | chr3.3:17864322-17864341 | None:intergenic | 30.0% | |
| ! | ATTCTTGGATCATTTTCAAC+TGG | - | chr3.3:17864855-17864874 | None:intergenic | 30.0% |
| ! | CCAAATCAAAGTAATGGAAA+TGG | + | chr3.3:17864723-17864742 | MS.gene28232:CDS | 30.0% |
| ! | TATGGCAAGGTCAAAATTTT+GGG | + | chr3.3:17864422-17864441 | MS.gene28232:CDS | 30.0% |
| ! | TTATGGCAAGGTCAAAATTT+TGG | + | chr3.3:17864421-17864440 | MS.gene28232:CDS | 30.0% |
| !! | AAGAGAGTACTTTAGTGAAA+AGG | + | chr3.3:17864479-17864498 | MS.gene28232:CDS | 30.0% |
| !!! | AATTTTGGGACATAGATTCA+AGG | + | chr3.3:17864436-17864455 | MS.gene28232:CDS | 30.0% |
| ACAAACTAGAAGCTTCTGAA+TGG | - | chr3.3:17864647-17864666 | None:intergenic | 35.0% | |
| AGAGTTTCAAGAACATTTGG+AGG | + | chr3.3:17864066-17864085 | MS.gene28232:CDS | 35.0% | |
| CAATAACAGTAGTAACCAAC+CGG | + | chr3.3:17865019-17865038 | MS.gene28232:CDS | 35.0% | |
| CATTGTCTTGATGTACTTGA+AGG | - | chr3.3:17864012-17864031 | None:intergenic | 35.0% | |
| CTTCAAGACAAACTTGGTTT+AGG | + | chr3.3:17864180-17864199 | MS.gene28232:CDS | 35.0% | |
| CTTCAAGTACATCAAGACAA+TGG | + | chr3.3:17864010-17864029 | MS.gene28232:CDS | 35.0% | |
| CTTGAAACTCTCACAATTCT+TGG | - | chr3.3:17864057-17864076 | None:intergenic | 35.0% | |
| GACATAGATTCAAGGACTAA+AGG | + | chr3.3:17864444-17864463 | MS.gene28232:CDS | 35.0% | |
| GATCCTAATTCCACATTTGT+TGG | + | chr3.3:17864387-17864406 | MS.gene28232:CDS | 35.0% | |
| GATGATGTAGTAGAAGAAGA+AGG | - | chr3.3:17864795-17864814 | None:intergenic | 35.0% | |
| GGTTAAGAGATAGAAGGATA+AGG | + | chr3.3:17864124-17864143 | MS.gene28232:CDS | 35.0% | |
| GTGAGAGTTTCAAGAACATT+TGG | + | chr3.3:17864063-17864082 | MS.gene28232:CDS | 35.0% | |
| TAAGAGGGTTAAGAGATAGA+AGG | + | chr3.3:17864118-17864137 | MS.gene28232:CDS | 35.0% | |
| TGATGAAAAGATGGAATGAG+AGG | - | chr3.3:17864933-17864952 | None:intergenic | 35.0% | |
| TTTGAGGAAATTGAAGTGGA+GGG | - | chr3.3:17864266-17864285 | None:intergenic | 35.0% | |
| ! | AACTCAAAAGCTTTTCCCTA+TGG | + | chr3.3:17864575-17864594 | MS.gene28232:CDS | 35.0% |
| ! | GATCTACTTGTTGATGAGAT+TGG | - | chr3.3:17864704-17864723 | None:intergenic | 35.0% |
| !! | AAGCTTTGAGGAAATTGAAG+TGG | - | chr3.3:17864270-17864289 | None:intergenic | 35.0% |
| AAAGATGGAATGAGAGGATG+AGG | - | chr3.3:17864927-17864946 | None:intergenic | 40.0% | |
| AGAAGGAGGTGATACTAGTA+TGG | + | chr3.3:17863960-17863979 | MS.gene28232:CDS | 40.0% | |
| AGTAGGGTTTGTGAATGAAG+AGG | - | chr3.3:17864306-17864325 | None:intergenic | 40.0% | |
| GAACATTTGGAGGCAAAGAT+AGG | + | chr3.3:17864076-17864095 | MS.gene28232:CDS | 40.0% | |
| GCTTCTCATGAACTTTCTCT+TGG | + | chr3.3:17864354-17864373 | MS.gene28232:CDS | 40.0% | |
| TATCAAGCAAAGCAAGAAGG+AGG | + | chr3.3:17863946-17863965 | MS.gene28232:CDS | 40.0% | |
| TCACTCATTCAATTCACCTC+CGG | + | chr3.3:17864950-17864969 | MS.gene28232:CDS | 40.0% | |
| ! | CTTTGAGGAAATTGAAGTGG+AGG | - | chr3.3:17864267-17864286 | None:intergenic | 40.0% |
| ! | TTGCACTTCCCATTTCCTTT+TGG | + | chr3.3:17864747-17864766 | MS.gene28232:CDS | 40.0% |
| AGCTTGGAGCTAAATGGTAC+CGG | - | chr3.3:17864987-17865006 | None:intergenic | 45.0% | |
| TCCAGAAGCTTGGAGCTAAA+TGG | - | chr3.3:17864993-17865012 | None:intergenic | 45.0% | |
| ! | ACCATTTAGCTCCAAGCTTC+TGG | + | chr3.3:17864989-17865008 | MS.gene28232:CDS | 45.0% |
| ! | GAGCTAAATGGTACCGGAAA+AGG | - | chr3.3:17864981-17865000 | None:intergenic | 45.0% |
| !! | TGATGTACTTGAAGGTGCCT+TGG | - | chr3.3:17864004-17864023 | None:intergenic | 45.0% |
| CGACGAGCACTATCATCATC+CGG | - | chr3.3:17865041-17865060 | None:intergenic | 50.0% | |
| GAGCACTATCATCATCCGGT+TGG | - | chr3.3:17865037-17865056 | None:intergenic | 50.0% | |
| ! | ACCTCCGGTTAGACCTTTTC+CGG | + | chr3.3:17864965-17864984 | MS.gene28232:CDS | 50.0% |
| ! | GGTACCGGAAAAGGTCTAAC+CGG | - | chr3.3:17864972-17864991 | None:intergenic | 50.0% |
| ACCGGAAAAGGTCTAACCGG+AGG | - | chr3.3:17864969-17864988 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 17863922 | 17865067 | 17863922 | ID=MS.gene28232 |
| chr3.3 | mRNA | 17863922 | 17865067 | 17863922 | ID=MS.gene28232.t1;Parent=MS.gene28232 |
| chr3.3 | exon | 17863922 | 17865067 | 17863922 | ID=MS.gene28232.t1.exon1;Parent=MS.gene28232.t1 |
| chr3.3 | CDS | 17863922 | 17865067 | 17863922 | ID=cds.MS.gene28232.t1;Parent=MS.gene28232.t1 |
| Gene Sequence |
| Protein sequence |
