AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28397

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28397.t1 MTR_8g093530 98.624 436 4 1 1 436 1 434 0.0 888
MS.gene28397.t1 MTR_3g090120 53.545 409 168 3 34 423 59 464 7.09e-157 452
MS.gene28397.t1 MTR_7g094750 45.125 359 178 7 92 434 91 446 9.37e-105 318
MS.gene28397.t1 MTR_2g022560 42.655 354 184 6 92 429 97 447 1.47e-100 307
MS.gene28397.t1 MTR_7g109550 40.841 333 189 3 92 418 137 467 1.30e-87 275
MS.gene28397.t1 MTR_7g094750 51.899 237 112 2 92 327 91 326 6.59e-87 268
MS.gene28397.t1 MTR_1g058380 35.539 408 239 10 44 430 5 409 3.91e-83 261
MS.gene28397.t1 MTR_4g121560 37.709 358 206 5 80 422 102 457 5.60e-82 260
MS.gene28397.t1 MTR_0136s0010 38.920 352 190 6 89 421 167 512 6.83e-81 259
MS.gene28397.t1 MTR_4g126950 35.735 347 206 5 89 421 106 449 1.70e-80 256
MS.gene28397.t1 MTR_5g059400 36.103 349 203 4 88 419 171 516 4.67e-79 254
MS.gene28397.t1 MTR_1g116130 36.103 349 203 4 88 419 171 516 4.67e-79 254
MS.gene28397.t1 MTR_7g093450 38.000 350 192 6 89 419 245 588 5.05e-79 256
MS.gene28397.t1 MTR_5g033800 36.337 344 203 4 90 419 143 484 1.53e-78 252
MS.gene28397.t1 MTR_8g069790 35.429 350 210 5 84 419 170 517 1.41e-75 245
MS.gene28397.t1 MTR_3g464570 34.483 348 195 6 92 419 43 377 2.44e-70 227
MS.gene28397.t1 MTR_2g073500 35.756 344 193 9 87 421 24 348 6.42e-66 215
MS.gene28397.t1 MTR_5g033800 41.004 239 139 1 90 328 143 379 1.42e-64 212
MS.gene28397.t1 MTR_4g016940 32.102 352 208 7 90 418 84 427 8.50e-64 211
MS.gene28397.t1 MTR_1g050448 31.633 392 230 10 44 418 5 375 3.44e-63 208
MS.gene28397.t1 MTR_5g034810 33.894 357 209 8 69 418 16 352 1.13e-62 206
MS.gene28397.t1 MTR_4g088030 34.030 335 198 7 92 419 33 351 1.27e-62 206
MS.gene28397.t1 MTR_4g087730 33.828 337 202 6 89 419 42 363 6.53e-62 205
MS.gene28397.t1 MTR_3g021060 31.642 335 208 7 90 418 44 363 8.30e-62 204
MS.gene28397.t1 MTR_2g015720 31.148 366 231 7 59 418 8 358 3.08e-61 203
MS.gene28397.t1 MTR_1g112210 32.845 341 202 6 90 418 57 382 4.41e-60 201
MS.gene28397.t1 MTR_5g071350 31.522 368 202 7 83 419 52 400 1.13e-59 200
MS.gene28397.t1 MTR_2g073510 34.821 336 191 10 90 414 31 349 8.47e-59 196
MS.gene28397.t1 MTR_8g463790 32.493 357 203 10 92 423 71 414 1.49e-58 197
MS.gene28397.t1 MTR_3g049330 33.134 335 201 7 92 418 31 350 1.52e-58 196
MS.gene28397.t1 MTR_1g112210 33.724 341 186 7 90 418 57 369 1.67e-58 196
MS.gene28397.t1 MTR_1g111010 35.799 338 184 13 90 419 30 342 2.62e-58 195
MS.gene28397.t1 MTR_4g014440 30.168 358 215 8 89 419 59 408 3.18e-58 196
MS.gene28397.t1 MTR_3g070900 31.161 353 212 7 92 420 106 451 5.94e-57 194
MS.gene28397.t1 MTR_7g068920 31.909 351 210 6 90 418 78 421 1.62e-56 192
MS.gene28397.t1 MTR_3g035830 29.129 333 215 6 92 418 31 348 1.95e-56 190
MS.gene28397.t1 MTR_4g079700 31.445 353 211 10 76 418 32 363 2.26e-56 190
MS.gene28397.t1 MTR_3g021090 29.787 329 210 6 92 414 31 344 3.56e-56 191
MS.gene28397.t1 MTR_7g070060 30.168 358 215 10 91 421 63 412 3.95e-56 191
MS.gene28397.t1 MTR_3g071650 32.286 350 208 8 92 419 89 431 5.47e-56 191
MS.gene28397.t1 MTR_5g083260 28.802 434 263 14 19 419 5 425 6.63e-55 188
MS.gene28397.t1 MTR_5g082880 31.667 360 210 10 90 421 163 514 1.73e-54 189
MS.gene28397.t1 MTR_4g014430 30.966 352 197 10 92 414 108 442 6.73e-53 183
MS.gene28397.t1 MTR_2g091175 31.361 338 212 7 87 419 45 367 8.20e-53 181
MS.gene28397.t1 MTR_3g464570 33.451 284 156 6 156 419 3 273 8.90e-50 170
MS.gene28397.t1 MTR_3g109840 33.240 358 187 16 92 415 73 412 3.93e-46 165
MS.gene28397.t1 MTR_7g033230 30.959 365 203 12 88 418 260 609 3.06e-45 166
MS.gene28397.t1 MTR_7g033230 30.959 365 203 12 88 418 330 679 5.27e-45 166
MS.gene28397.t1 MTR_8g104970 29.670 364 205 12 90 418 118 465 7.39e-44 160
MS.gene28397.t1 MTR_5g035080 31.111 360 201 14 92 418 75 420 1.13e-43 158
MS.gene28397.t1 MTR_5g035090 31.092 357 202 12 91 416 82 425 1.40e-43 158
MS.gene28397.t1 MTR_5g035150 30.812 357 211 10 90 418 83 431 4.30e-42 154
MS.gene28397.t1 MTR_7g070060 32.365 241 151 5 91 327 63 295 9.65e-42 150
MS.gene28397.t1 MTR_4g125060 28.814 354 227 10 84 418 124 471 2.06e-41 153
MS.gene28397.t1 MTR_6g016875 31.044 364 211 10 84 418 56 408 2.91e-41 152
MS.gene28397.t1 MTR_6g016880 28.571 371 230 12 89 435 75 434 5.38e-41 151
MS.gene28397.t1 MTR_4g125060 28.814 354 227 10 84 418 163 510 6.62e-41 152
MS.gene28397.t1 MTR_4g125060 28.814 354 227 10 84 418 192 539 9.84e-41 152
MS.gene28397.t1 MTR_8g027900 29.526 359 211 12 90 418 209 555 1.45e-40 152
MS.gene28397.t1 MTR_7g019120 29.805 359 213 14 90 421 77 423 1.65e-40 150
MS.gene28397.t1 MTR_6g061710 26.613 372 228 10 85 423 160 519 1.88e-39 149
MS.gene28397.t1 MTR_6g007777 26.004 473 260 17 23 421 4 460 2.68e-38 144
MS.gene28397.t1 MTR_8g093870 29.360 344 222 11 92 418 133 472 3.25e-38 144
MS.gene28397.t1 MTR_1g076690 26.790 377 231 11 80 423 211 575 2.11e-37 144
MS.gene28397.t1 MTR_8g099300 28.969 359 212 12 91 418 73 419 5.31e-37 140
MS.gene28397.t1 MTR_5g035070 28.045 353 218 10 92 416 87 431 9.75e-36 137
MS.gene28397.t1 MTR_7g070060 27.303 304 187 9 144 421 15 310 2.57e-35 133
MS.gene28397.t1 MTR_2g016060 29.178 353 215 12 93 418 56 400 3.48e-35 135
MS.gene28397.t1 MTR_2g022580 48.780 123 63 0 152 274 2 124 1.56e-34 125
MS.gene28397.t1 MTR_4g092830 28.333 360 215 13 92 421 48 394 1.86e-33 130
MS.gene28397.t1 MTR_6g016240 28.457 376 228 16 73 418 52 416 2.84e-29 119
MS.gene28397.t1 MTR_5g035120 42.857 91 52 0 90 180 73 163 1.24e-24 100
MS.gene28397.t1 MTR_7g019140 42.857 91 52 0 90 180 77 167 8.24e-23 95.1
MS.gene28397.t1 MTR_5g069320 26.978 278 161 5 138 411 147 386 5.39e-20 91.7
MS.gene28397.t1 MTR_5g035140 28.512 242 137 12 209 418 28 265 6.69e-16 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28397.t1 AT1G48880 62.935 402 139 3 22 421 49 442 0.0 533
MS.gene28397.t1 AT5G19160 38.876 445 230 9 27 432 19 460 1.28e-101 311
MS.gene28397.t1 AT3G06080 42.818 362 186 6 92 435 103 461 2.68e-101 310
MS.gene28397.t1 AT3G62390 39.205 352 203 3 77 419 123 472 6.53e-92 286
MS.gene28397.t1 AT5G06230 38.162 359 201 5 81 420 10 366 2.95e-91 281
MS.gene28397.t1 AT5G06230 38.162 359 201 5 81 420 51 407 8.15e-91 281
MS.gene28397.t1 AT3G11570 40.741 324 181 3 108 420 98 421 2.59e-87 273
MS.gene28397.t1 AT5G19160 42.320 319 163 4 27 327 19 334 3.01e-84 262
MS.gene28397.t1 AT5G20590 37.572 346 202 6 89 421 138 482 9.46e-82 260
MS.gene28397.t1 AT3G06080 49.576 236 119 0 92 327 103 338 1.90e-81 255
MS.gene28397.t1 AT3G12060 36.963 349 205 4 89 423 193 540 2.94e-80 258
MS.gene28397.t1 AT5G06700 36.599 347 205 4 89 421 252 597 7.83e-78 253
MS.gene28397.t1 AT5G49340 37.714 350 201 6 89 422 97 445 2.05e-75 243
MS.gene28397.t1 AT3G62390 40.769 260 152 1 77 336 123 380 4.92e-72 233
MS.gene28397.t1 AT1G60790 34.493 345 208 5 92 419 190 533 9.38e-72 236
MS.gene28397.t1 AT5G06230 40.625 256 142 2 81 328 51 304 3.26e-70 224
MS.gene28397.t1 AT1G29050 32.267 375 225 7 59 418 18 378 7.70e-70 226
MS.gene28397.t1 AT2G34070 34.234 333 199 6 92 418 65 383 1.54e-65 215
MS.gene28397.t1 AT5G58600 34.000 350 195 9 92 419 66 401 5.32e-65 214
MS.gene28397.t1 AT5G20590 40.249 241 142 2 89 328 138 377 2.05e-64 212
MS.gene28397.t1 AT3G14850 34.328 335 198 6 92 418 34 354 2.50e-64 211
MS.gene28397.t1 AT1G78710 33.889 360 204 10 74 421 22 359 8.30e-64 209
MS.gene28397.t1 AT2G31110 33.718 347 209 8 79 418 30 362 1.01e-60 202
MS.gene28397.t1 AT3G11030 32.670 352 205 8 92 419 106 449 2.95e-60 203
MS.gene28397.t1 AT5G01360 30.484 351 214 7 91 418 35 378 1.60e-59 199
MS.gene28397.t1 AT2G30010 34.366 355 193 10 92 419 56 397 1.67e-59 199
MS.gene28397.t1 AT2G30010 34.366 355 193 10 92 419 99 440 3.64e-59 200
MS.gene28397.t1 AT5G01360 30.484 351 214 7 91 418 91 434 4.55e-59 199
MS.gene28397.t1 AT2G42570 30.028 353 222 6 80 421 29 367 1.94e-58 196
MS.gene28397.t1 AT3G54260 31.977 344 201 7 92 420 51 376 2.95e-58 196
MS.gene28397.t1 AT2G30900 33.038 339 201 9 92 419 43 366 1.46e-57 194
MS.gene28397.t1 AT3G55990 30.726 358 211 8 90 420 138 485 1.52e-55 191
MS.gene28397.t1 AT2G40150 30.579 363 209 8 91 420 70 422 7.50e-55 188
MS.gene28397.t1 AT1G73140 30.362 359 216 9 84 419 59 406 3.53e-54 186
MS.gene28397.t1 AT2G40320 30.769 351 212 9 92 419 81 423 1.03e-53 185
MS.gene28397.t1 AT2G40160 30.579 363 216 10 89 424 74 427 3.25e-53 184
MS.gene28397.t1 AT2G38320 28.056 360 224 8 90 422 57 408 5.14e-53 183
MS.gene28397.t1 AT2G40160 30.595 353 211 9 89 414 74 419 1.00e-52 183
MS.gene28397.t1 AT5G01620 29.558 362 222 8 76 415 96 446 3.17e-52 182
MS.gene28397.t1 AT5G01620 29.558 362 222 8 76 415 96 446 3.17e-52 182
MS.gene28397.t1 AT5G01620 29.558 362 222 8 76 415 104 454 3.72e-52 182
MS.gene28397.t1 AT5G58600 35.865 237 138 3 92 327 66 289 1.84e-50 172
MS.gene28397.t1 AT1G78710 28.977 352 179 9 74 421 15 299 9.03e-45 158
MS.gene28397.t1 AT1G01430 30.110 362 209 11 91 419 98 448 1.97e-44 161
MS.gene28397.t1 AT2G38320 27.217 327 204 7 122 422 7 325 5.73e-44 157
MS.gene28397.t1 AT1G70230 30.460 348 206 12 92 418 79 411 7.84e-43 156
MS.gene28397.t1 AT5G64470 31.564 358 206 15 92 421 55 401 1.03e-42 155
MS.gene28397.t1 AT2G31110 34.940 249 146 6 78 324 29 263 1.79e-42 151
MS.gene28397.t1 AT5G64470 31.044 364 206 15 92 421 55 407 1.24e-41 152
MS.gene28397.t1 AT2G30900 35.470 234 131 6 92 321 43 260 1.94e-41 148
MS.gene28397.t1 AT4G01080 30.618 356 198 11 91 415 90 427 5.81e-41 151
MS.gene28397.t1 AT3G02440 31.445 353 205 12 92 418 127 468 1.69e-40 150
MS.gene28397.t1 AT3G02440 31.445 353 205 12 92 418 135 476 1.75e-40 151
MS.gene28397.t1 AT4G23790 30.833 360 211 11 89 418 76 427 1.34e-39 147
MS.gene28397.t1 AT5G64020 28.771 358 218 11 92 418 57 408 2.56e-39 146
MS.gene28397.t1 AT4G11090 30.278 360 205 13 89 415 76 422 3.19e-39 146
MS.gene28397.t1 AT2G34070 30.798 263 162 6 162 418 1 249 9.25e-39 140
MS.gene28397.t1 AT3G14850 32.950 261 153 7 162 414 1 247 1.08e-38 140
MS.gene28397.t1 AT5G15890 30.226 354 208 13 92 421 187 525 2.12e-38 146
MS.gene28397.t1 AT2G40160 31.967 244 154 5 89 327 74 310 3.26e-38 141
MS.gene28397.t1 AT2G37720 27.920 351 224 10 89 418 140 482 5.07e-38 144
MS.gene28397.t1 AT4G25360 26.389 360 218 10 91 415 174 521 7.26e-38 144
MS.gene28397.t1 AT4G25360 26.389 360 218 10 91 415 174 521 7.26e-38 144
MS.gene28397.t1 AT5G20680 26.648 349 229 11 90 418 116 457 1.72e-34 134
MS.gene28397.t1 AT5G20680 27.042 355 220 12 90 418 192 533 4.55e-34 134
MS.gene28397.t1 AT5G20680 27.042 355 220 12 90 418 210 551 6.36e-34 134
MS.gene28397.t1 AT5G20680 27.042 355 220 12 90 418 210 551 6.36e-34 134
MS.gene28397.t1 AT5G20680 27.042 355 220 12 90 418 210 551 6.36e-34 134
MS.gene28397.t1 AT5G20680 27.042 355 220 12 90 418 210 551 6.36e-34 134
MS.gene28397.t1 AT5G15900 29.201 363 217 14 92 426 67 417 1.20e-33 131
MS.gene28397.t1 AT5G15900 29.201 363 217 14 92 426 86 436 1.47e-33 131
MS.gene28397.t1 AT3G28150 29.345 351 212 13 91 416 69 408 2.41e-33 130
MS.gene28397.t1 AT5G51640 25.745 369 226 9 91 423 137 493 2.18e-32 129
MS.gene28397.t1 AT2G14530 29.363 361 209 15 92 420 62 408 4.81e-32 126
MS.gene28397.t1 AT5G64470 32.129 249 145 10 92 327 55 292 6.53e-30 119
MS.gene28397.t1 AT5G64470 32.129 249 145 10 92 327 55 292 7.88e-30 118
MS.gene28397.t1 AT2G31110 32.710 214 132 5 210 418 8 214 1.03e-29 115

Find 73 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTCAAAACTTGGACTTCT+TGG 0.144481 4.4:+9124581 MS.gene28397:CDS
CATCCAAAGCGGTTGATAAT+TGG 0.219439 4.4:-9122999 None:intergenic
TGGAAATGTTGAGGAGTAAA+AGG 0.261320 4.4:+9123381 MS.gene28397:CDS
GTTGGAATTTCACAACTCTT+AGG 0.273880 4.4:-9123338 None:intergenic
ATAATTTCATTCCACATATC+AGG 0.293452 4.4:-9125369 None:intergenic
CAACAGGGGTTGTTATTTCC+AGG 0.328258 4.4:+9124507 MS.gene28397:intron
TAGTCTCAAAAGTGGGGAAC+TGG 0.339854 4.4:-9125167 None:intergenic
ATCAGATTACAAAGAGGATT+AGG 0.354758 4.4:+9123510 MS.gene28397:CDS
AAAGCGGTTGATAATTGGTT+TGG 0.356984 4.4:-9122994 None:intergenic
GAACAAGGATTTGATTGTTT+AGG 0.359561 4.4:+9123272 MS.gene28397:CDS
GGAACATGGGTTCAAGTATC+TGG 0.373068 4.4:+9123212 MS.gene28397:CDS
GTAACATGGAGAACGTTTAT+AGG 0.374567 4.4:-9125252 None:intergenic
AGGAAATGGAAGGAGTGATT+TGG 0.385468 4.4:+9123292 MS.gene28397:CDS
GATATTCTTATATTCAATAC+TGG 0.385489 4.4:+9123695 MS.gene28397:CDS
GGATTTGATTGTTTAGGAAA+TGG 0.407456 4.4:+9123278 MS.gene28397:CDS
AAGCGGTTGATAATTGGTTT+GGG 0.409808 4.4:-9122993 None:intergenic
AGAATGAGATCTTCTGTTGA+AGG 0.411442 4.4:-9122955 None:intergenic
GCTTTGGATGTGTTTCTTTG+AGG 0.416695 4.4:+9123012 MS.gene28397:CDS
GTGATGCACATGTTGGTAAC+TGG 0.425219 4.4:+9125295 MS.gene28397:CDS
ATAAAATAGCACTCAAAACT+TGG 0.427959 4.4:+9124572 MS.gene28397:CDS
AAACCAATTATCAACCGCTT+TGG 0.428304 4.4:+9122996 MS.gene28397:CDS
TCCTTCTTTATAGCAATTGG+TGG 0.441666 4.4:+9123068 MS.gene28397:CDS
TTGGAAGATCTCTGAAGCTT+GGG 0.445761 4.4:+9124530 MS.gene28397:CDS
TTGATTTGTATGTTGATGAC+TGG 0.450820 4.4:+9123449 MS.gene28397:CDS
TGCAGCCATTGGTGTCTACC+TGG 0.456267 4.4:+9125342 MS.gene28397:CDS
TTCTTTATAGCAATTGGTGG+TGG 0.458019 4.4:+9123071 MS.gene28397:CDS
AGTGTTGATTTAACCCTCCT+TGG 0.459189 4.4:-9123626 None:intergenic
TCAAATCCTTGTTCAACAAA+AGG 0.464197 4.4:-9123263 None:intergenic
TTTCTTGGTACAGCAGCGTC+CGG 0.470183 4.4:+9123589 MS.gene28397:CDS
GGAAATGTTGAGGAGTAAAA+GGG 0.480993 4.4:+9123382 MS.gene28397:CDS
GTTGGAAGATCTCTGAAGCT+TGG 0.483244 4.4:+9124529 MS.gene28397:CDS
GAATGATAATCCATTGAGTC+AGG 0.483902 4.4:+9125317 MS.gene28397:CDS
TGGCTGCAATCCTGACTCAA+TGG 0.488106 4.4:-9125327 None:intergenic
TTCGATGAGTAGAACTCAAT+GGG 0.495930 4.4:+9123421 MS.gene28397:CDS
TTATATTCAATACTGGTCAC+TGG 0.507782 4.4:+9123702 MS.gene28397:CDS
TTCCACATATCAGGCACTCC+AGG 0.511171 4.4:-9125360 None:intergenic
AGATCTCATTCTCAACCTCT+TGG 0.514412 4.4:+9122966 MS.gene28397:CDS
TGAGTCAGGATTGCAGCCAT+TGG 0.524273 4.4:+9125331 MS.gene28397:CDS
ACCACCAATTGCTATAAAGA+AGG 0.526497 4.4:-9123069 None:intergenic
CTTGGTGCATGTTCATGAGC+CGG 0.529839 4.4:-9123608 None:intergenic
GGGTTACATTGCAAGTCCTA+CGG 0.531440 4.4:-9125146 None:intergenic
TTGATTGTTTAGGAAATGGA+AGG 0.533272 4.4:+9123282 MS.gene28397:CDS
ATTCGATGAGTAGAACTCAA+TGG 0.533879 4.4:+9123420 MS.gene28397:CDS
ACAGCACCAACATCAAAAGT+TGG 0.536992 4.4:-9123356 None:intergenic
TAGATGATATAAGTCATCAA+TGG 0.537422 4.4:+9123663 MS.gene28397:CDS
TACCTGGAGTGCCTGATATG+TGG 0.545087 4.4:+9125358 MS.gene28397:CDS
GGTTACATTGCAAGTCCTAC+GGG 0.554442 4.4:-9125145 None:intergenic
TACGTGTGGAAAAGCTTAGA+TGG 0.556442 4.4:-9123731 None:intergenic
CGTTGCATTAGTCTCAAAAG+TGG 0.557442 4.4:-9125175 None:intergenic
GTTGCATTAGTCTCAAAAGT+GGG 0.563412 4.4:-9125174 None:intergenic
AGGGGTTGTTATTTCCAGGT+TGG 0.564868 4.4:+9124511 MS.gene28397:intron
AGTCTCAAAAGTGGGGAACT+GGG 0.574184 4.4:-9125166 None:intergenic
TATTCAATACTGGTCACTGG+TGG 0.581699 4.4:+9123705 MS.gene28397:CDS
TGGGAATACCTCCAGTGAGA+TGG 0.587027 4.4:-9124658 None:intergenic
GCTTCAGAGATCTTCCAACC+TGG 0.590103 4.4:-9124525 None:intergenic
CCTCGCAGTGATGCACATGT+TGG 0.597967 4.4:+9125288 MS.gene28397:CDS
TATGTTGATGACTGGTGTGG+AGG 0.600077 4.4:+9123457 MS.gene28397:CDS
TTGTATGTTGATGACTGGTG+TGG 0.600347 4.4:+9123454 MS.gene28397:CDS
TCATGAACATGCACCAAGGA+GGG 0.607670 4.4:+9123613 MS.gene28397:CDS
GAGCCGACATAGATGTAACA+TGG 0.615016 4.4:-9125266 None:intergenic
TCTCCATGTTACATCTATGT+CGG 0.618261 4.4:+9125263 MS.gene28397:CDS
ATTCAATACTGGTCACTGGT+GGG 0.631466 4.4:+9123706 MS.gene28397:CDS
GCACTCCAGGTAGACACCAA+TGG 0.634922 4.4:-9125347 None:intergenic
ATCAGAATCAGATTACAAAG+AGG 0.636550 4.4:+9123504 MS.gene28397:CDS
CACTCAGTTGCATTATACAA+AGG 0.639596 4.4:-9123239 None:intergenic
CTCATGAACATGCACCAAGG+AGG 0.668023 4.4:+9123612 MS.gene28397:CDS
GGCTTTGTCACAAACATGAG+TGG 0.668070 4.4:+9122909 None:intergenic
ATTGGTTTGGGACTACCAAG+AGG 0.679709 4.4:-9122981 None:intergenic
TTGCATTAGTCTCAAAAGTG+GGG 0.688555 4.4:-9125173 None:intergenic
CGGCTCATGAACATGCACCA+AGG 0.691315 4.4:+9123609 MS.gene28397:CDS
TCAAAGAAACACATCCAAAG+CGG 0.695679 4.4:-9123010 None:intergenic
GCTGCAGTGATGATACCCGT+AGG 0.703800 4.4:+9125130 MS.gene28397:intron
CCAACATGTGCATCACTGCG+AGG 0.720577 4.4:-9125288 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAACTACAACAAATA+TGG - chr4.4:9123899-9123918 None:intergenic 15.0%
!! AGAAAATATTGTTATAAAGA+AGG - chr4.4:9125051-9125070 None:intergenic 15.0%
!! AGTTGAAATATTGAAAAGAA+TGG - chr4.4:9123762-9123781 None:intergenic 20.0%
!! ATTTAAGAGAAAGACTATAA+GGG + chr4.4:9124093-9124112 MS.gene28397:intron 20.0%
!! GATATTCTTATATTCAATAC+TGG + chr4.4:9123695-9123714 MS.gene28397:CDS 20.0%
!! TATTTAAGAGAAAGACTATA+AGG + chr4.4:9124092-9124111 MS.gene28397:intron 20.0%
!! TTCATATTCAGTAAAAAGTT+GGG - chr4.4:9125400-9125419 None:intergenic 20.0%
!! TTTCATATTCAGTAAAAAGT+TGG - chr4.4:9125401-9125420 None:intergenic 20.0%
!!! AAATCTGTGTTTTCATATTT+TGG + chr4.4:9124435-9124454 MS.gene28397:intron 20.0%
!!! AGTTTTAGAGTTAATATAAC+AGG + chr4.4:9124117-9124136 MS.gene28397:intron 20.0%
!!! TAGTTTCATTTTCTGAAAAA+GGG - chr4.4:9125425-9125444 None:intergenic 20.0%
! ATAAAATAGCACTCAAAACT+TGG + chr4.4:9124572-9124591 MS.gene28397:CDS 25.0%
! ATAATTTCATTCCACATATC+AGG - chr4.4:9125372-9125391 None:intergenic 25.0%
! TAGATGATATAAGTCATCAA+TGG + chr4.4:9123663-9123682 MS.gene28397:CDS 25.0%
! TTGCCAATAATTGTTCAATT+CGG + chr4.4:9124911-9124930 MS.gene28397:intron 25.0%
! TTGTTTATCAGTAGGTTTAA+GGG + chr4.4:9123966-9123985 MS.gene28397:intron 25.0%
! TTTGTTTATCAGTAGGTTTA+AGG + chr4.4:9123965-9123984 MS.gene28397:intron 25.0%
!! AACATAAAAAAACAGCCTTT+TGG - chr4.4:9124170-9124189 None:intergenic 25.0%
!! GATGATAGACACTTAAATTT+TGG + chr4.4:9124253-9124272 MS.gene28397:intron 25.0%
!! TCTAACACATTTTCTATTTC+TGG + chr4.4:9125572-9125591 MS.gene28397:intron 25.0%
!! TTTTCCTTCTTTATAGCAAT+TGG + chr4.4:9123065-9123084 MS.gene28397:CDS 25.0%
!!! AGAAAATGTGATGTTTTTGA+TGG + chr4.4:9123191-9123210 MS.gene28397:CDS 25.0%
!!! AGTTTTGAGTGCTATTTTAT+AGG - chr4.4:9124572-9124591 None:intergenic 25.0%
!!! ATCACACATGCTTTTTTTAA+TGG + chr4.4:9123116-9123135 MS.gene28397:CDS 25.0%
!!! ATGAAAACACAGATTTGTTA+AGG - chr4.4:9124431-9124450 None:intergenic 25.0%
!!! ATTTTTTCGATCAGTTTTCT+TGG + chr4.4:9123574-9123593 MS.gene28397:CDS 25.0%
!!! CATCTTTTTGTTTGTTAATG+AGG + chr4.4:9124298-9124317 MS.gene28397:intron 25.0%
!!! GTAGTTTCATTTTCTGAAAA+AGG - chr4.4:9125426-9125445 None:intergenic 25.0%
!!! TACTCTTTATCTCTCTTTTT+TGG - chr4.4:9125504-9125523 None:intergenic 25.0%
!!! TGAAAACACAGATTTGTTAA+GGG - chr4.4:9124430-9124449 None:intergenic 25.0%
!!! TTGCTAATTTGTTTATCAGT+AGG + chr4.4:9123958-9123977 MS.gene28397:intron 25.0%
!!! TTGGAATCTGTTTTTGTTTT+TGG + chr4.4:9124454-9124473 MS.gene28397:intron 25.0%
AATATGAAGACTGAAGAGTA+TGG - chr4.4:9123936-9123955 None:intergenic 30.0%
ACATCCATTGTTCTCTTATT+AGG + chr4.4:9124037-9124056 MS.gene28397:intron 30.0%
AGAACCTAATAAGAGAACAA+TGG - chr4.4:9124044-9124063 None:intergenic 30.0%
ATCAGAATCAGATTACAAAG+AGG + chr4.4:9123504-9123523 MS.gene28397:CDS 30.0%
ATCAGATTACAAAGAGGATT+AGG + chr4.4:9123510-9123529 MS.gene28397:CDS 30.0%
ATCCCGAATTGAACAATTAT+TGG - chr4.4:9124917-9124936 None:intergenic 30.0%
ATTATACTTGCTCAAAACAG+TGG - chr4.4:9124405-9124424 None:intergenic 30.0%
CATCATGTTATCCATAATGT+GGG - chr4.4:9124680-9124699 None:intergenic 30.0%
CATGAACTTCAAAATCATGA+CGG - chr4.4:9124067-9124086 None:intergenic 30.0%
GAACAAGGATTTGATTGTTT+AGG + chr4.4:9123272-9123291 MS.gene28397:CDS 30.0%
GGATTTGATTGTTTAGGAAA+TGG + chr4.4:9123278-9123297 MS.gene28397:CDS 30.0%
TCAAATCCTTGTTCAACAAA+AGG - chr4.4:9123266-9123285 None:intergenic 30.0%
TGCCAATAATTGTTCAATTC+GGG + chr4.4:9124912-9124931 MS.gene28397:intron 30.0%
TGTTTATCAGTAGGTTTAAG+GGG + chr4.4:9123967-9123986 MS.gene28397:intron 30.0%
TTATATTCAATACTGGTCAC+TGG + chr4.4:9123702-9123721 MS.gene28397:CDS 30.0%
TTGATTGTTTAGGAAATGGA+AGG + chr4.4:9123282-9123301 MS.gene28397:CDS 30.0%
! AAAAAAGCATGTGTGATACT+AGG - chr4.4:9123113-9123132 None:intergenic 30.0%
! ACAAAGAGGATTAGGTTTTT+AGG + chr4.4:9123518-9123537 MS.gene28397:CDS 30.0%
! GAAATTCCAACTTTTGATGT+TGG + chr4.4:9123350-9123369 MS.gene28397:CDS 30.0%
! GGTTAAATCAACACTTTTGT+TGG + chr4.4:9123634-9123653 MS.gene28397:CDS 30.0%
!! TGATGTTTTTGATGGAACAT+GGG + chr4.4:9123199-9123218 MS.gene28397:CDS 30.0%
!! TTGATTTGTATGTTGATGAC+TGG + chr4.4:9123449-9123468 MS.gene28397:CDS 30.0%
!!! AGTAAAAGGGTTGTTTTTGT+TGG + chr4.4:9123395-9123414 MS.gene28397:CDS 30.0%
!!! CATGCTTTTTTTAATGGACA+AGG + chr4.4:9123122-9123141 MS.gene28397:CDS 30.0%
!!! TTTGAGTGCTATTTTATAGG+CGG - chr4.4:9124569-9124588 None:intergenic 30.0%
AAACCAATTATCAACCGCTT+TGG + chr4.4:9122996-9123015 MS.gene28397:CDS 35.0%
ACCACCAATTGCTATAAAGA+AGG - chr4.4:9123072-9123091 None:intergenic 35.0%
AGAATGAGATCTTCTGTTGA+AGG - chr4.4:9122958-9122977 None:intergenic 35.0%
ATTCAGTAAAAAGTTGGGAC+AGG - chr4.4:9125395-9125414 None:intergenic 35.0%
ATTCGATGAGTAGAACTCAA+TGG + chr4.4:9123420-9123439 MS.gene28397:CDS 35.0%
CACTCAGTTGCATTATACAA+AGG - chr4.4:9123242-9123261 None:intergenic 35.0%
GAATGATAATCCATTGAGTC+AGG + chr4.4:9125317-9125336 MS.gene28397:CDS 35.0%
GATATGGATTCCCAAAACTA+AGG - chr4.4:9124790-9124809 None:intergenic 35.0%
GCATCATGTTATCCATAATG+TGG - chr4.4:9124681-9124700 None:intergenic 35.0%
GGAAATGTTGAGGAGTAAAA+GGG + chr4.4:9123382-9123401 MS.gene28397:CDS 35.0%
GTAACATGGAGAACGTTTAT+AGG - chr4.4:9125255-9125274 None:intergenic 35.0%
GTTGGAATTTCACAACTCTT+AGG - chr4.4:9123341-9123360 None:intergenic 35.0%
GTTTATCAGTAGGTTTAAGG+GGG + chr4.4:9123968-9123987 MS.gene28397:intron 35.0%
TCAAAGAAACACATCCAAAG+CGG - chr4.4:9123013-9123032 None:intergenic 35.0%
TCAATTCGGGATTCAAATTC+AGG + chr4.4:9124925-9124944 MS.gene28397:intron 35.0%
TCCCAAAACATTTGACCAAA+AGG + chr4.4:9124152-9124171 MS.gene28397:intron 35.0%
TCCTTCTTTATAGCAATTGG+TGG + chr4.4:9123068-9123087 MS.gene28397:CDS 35.0%
TCTCCATGTTACATCTATGT+CGG + chr4.4:9125263-9125282 MS.gene28397:CDS 35.0%
TGGAAATGTTGAGGAGTAAA+AGG + chr4.4:9123381-9123400 MS.gene28397:CDS 35.0%
TGGTTAGTGAACTTTAGTCA+AGG - chr4.4:9124969-9124988 None:intergenic 35.0%
TTCGATGAGTAGAACTCAAT+GGG + chr4.4:9123421-9123440 MS.gene28397:CDS 35.0%
TTCTTTATAGCAATTGGTGG+TGG + chr4.4:9123071-9123090 MS.gene28397:CDS 35.0%
TTTATCAGTAGGTTTAAGGG+GGG + chr4.4:9123969-9123988 MS.gene28397:intron 35.0%
! ACTCAAACACAATTGAGTTG+TGG - chr4.4:9123868-9123887 None:intergenic 35.0%
! AGCCTTTTGGTCAAATGTTT+TGG - chr4.4:9124157-9124176 None:intergenic 35.0%
! GCCTTTTGGTCAAATGTTTT+GGG - chr4.4:9124156-9124175 None:intergenic 35.0%
! GTTGCATTAGTCTCAAAAGT+GGG - chr4.4:9125177-9125196 None:intergenic 35.0%
! TAGCAAGCATTCCTTAGTTT+TGG + chr4.4:9124776-9124795 MS.gene28397:intron 35.0%
! TTGCATTAGTCTCAAAAGTG+GGG - chr4.4:9125176-9125195 None:intergenic 35.0%
!! AAAGCGGTTGATAATTGGTT+TGG - chr4.4:9122997-9123016 None:intergenic 35.0%
!! AAGCGGTTGATAATTGGTTT+GGG - chr4.4:9122996-9123015 None:intergenic 35.0%
!! AGCAAGCATTCCTTAGTTTT+GGG + chr4.4:9124777-9124796 MS.gene28397:intron 35.0%
!! GGATTAGGTTTTTAGGAGTT+AGG + chr4.4:9123525-9123544 MS.gene28397:CDS 35.0%
!! GTGATGTTTTTGATGGAACA+TGG + chr4.4:9123198-9123217 MS.gene28397:CDS 35.0%
!! GTGATTTGGATTTTCTTTCG+TGG + chr4.4:9123306-9123325 MS.gene28397:CDS 35.0%
!! GTTCTCAGTCTTTTAAGAGT+TGG - chr4.4:9125477-9125496 None:intergenic 35.0%
!! TCATCTTGATTTTCAAGCAG+TGG - chr4.4:9124238-9124257 None:intergenic 35.0%
!!! ATAGAACACGCGTCTTTTTT+AGG + chr4.4:9124626-9124645 MS.gene28397:CDS 35.0%
!!! CACTTTTGAGACTAATGCAA+CGG + chr4.4:9125176-9125195 MS.gene28397:CDS 35.0%
!!! TTTTGATGTTGGTGCTGTTT+TGG + chr4.4:9123361-9123380 MS.gene28397:CDS 35.0%
!!! TTTTTTTTGTCTTCACCCTC+CGG + chr4.4:9124831-9124850 MS.gene28397:intron 35.0%
AAAGAATGGAACCTTACGTG+TGG - chr4.4:9123748-9123767 None:intergenic 40.0%
ACAGCACCAACATCAAAAGT+TGG - chr4.4:9123359-9123378 None:intergenic 40.0%
AGATCTCATTCTCAACCTCT+TGG + chr4.4:9122966-9122985 MS.gene28397:CDS 40.0%
AGGAAATGGAAGGAGTGATT+TGG + chr4.4:9123292-9123311 MS.gene28397:CDS 40.0%
ATCCTCTTCTTGCATTCAAC+AGG + chr4.4:9124491-9124510 MS.gene28397:intron 40.0%
ATTCAATACTGGTCACTGGT+GGG + chr4.4:9123706-9123725 MS.gene28397:CDS 40.0%
CACTCAAAACTTGGACTTCT+TGG + chr4.4:9124581-9124600 MS.gene28397:CDS 40.0%
GCTTATAGAATCCAACCAAG+TGG - chr4.4:9125003-9125022 None:intergenic 40.0%
TACGTGTGGAAAAGCTTAGA+TGG - chr4.4:9123734-9123753 None:intergenic 40.0%
TAGTCAAGGTCAAAACGATC+AGG - chr4.4:9124955-9124974 None:intergenic 40.0%
TATTCAATACTGGTCACTGG+TGG + chr4.4:9123705-9123724 MS.gene28397:CDS 40.0%
TCCTCTTCTTGCATTCAACA+GGG + chr4.4:9124492-9124511 MS.gene28397:intron 40.0%
! CGTTGCATTAGTCTCAAAAG+TGG - chr4.4:9125178-9125197 None:intergenic 40.0%
! GAGTGTCCTTTTGTTGAACA+AGG + chr4.4:9123257-9123276 MS.gene28397:CDS 40.0%
! GCTTTGGATGTGTTTCTTTG+AGG + chr4.4:9123012-9123031 MS.gene28397:CDS 40.0%
! GTTTGTTAATGAGGCGTATC+AGG + chr4.4:9124307-9124326 MS.gene28397:intron 40.0%
! TCTAAGCTTTTCCACACGTA+AGG + chr4.4:9123734-9123753 MS.gene28397:intron 40.0%
! TGGATTTTCTTTCGTGGAGA+TGG + chr4.4:9123312-9123331 MS.gene28397:CDS 40.0%
!! AGTGTTGATTTAACCCTCCT+TGG - chr4.4:9123629-9123648 None:intergenic 40.0%
!! CATCCAAAGCGGTTGATAAT+TGG - chr4.4:9123002-9123021 None:intergenic 40.0%
!! TTGATTTTCAAGCAGTGGCA+AGG - chr4.4:9124233-9124252 None:intergenic 40.0%
!! TTGGAAGATCTCTGAAGCTT+GGG + chr4.4:9124530-9124549 MS.gene28397:CDS 40.0%
!! TTGTATGTTGATGACTGGTG+TGG + chr4.4:9123454-9123473 MS.gene28397:CDS 40.0%
!!! GTGCTGTTTTGGAAATGTTG+AGG + chr4.4:9123372-9123391 MS.gene28397:CDS 40.0%
AAAGACCATGTCCTCACGAT+TGG - chr4.4:9123827-9123846 None:intergenic 45.0%
AACTGTAAGCCAGTAGCGTT+TGG + chr4.4:9123778-9123797 MS.gene28397:intron 45.0%
AAGACCATGTCCTCACGATT+GGG - chr4.4:9123826-9123845 None:intergenic 45.0%
ACCAAGTGGTTGAGCTTAAG+TGG - chr4.4:9124989-9125008 None:intergenic 45.0%
ACCACTTAAGCTCAACCACT+TGG + chr4.4:9124985-9125004 MS.gene28397:intron 45.0%
AGTCTCAAAAGTGGGGAACT+GGG - chr4.4:9125169-9125188 None:intergenic 45.0%
CCTCTTCTTGCATTCAACAG+GGG + chr4.4:9124493-9124512 MS.gene28397:intron 45.0%
CTTAAGCTCAACCACTTGGT+TGG + chr4.4:9124989-9125008 MS.gene28397:intron 45.0%
CTTACCTCCTAACCGAATTC+CGG - chr4.4:9124884-9124903 None:intergenic 45.0%
GAGCCGACATAGATGTAACA+TGG - chr4.4:9125269-9125288 None:intergenic 45.0%
GGAACATGGGTTCAAGTATC+TGG + chr4.4:9123212-9123231 MS.gene28397:CDS 45.0%
GGGTTACATTGCAAGTCCTA+CGG - chr4.4:9125149-9125168 None:intergenic 45.0%
GGTTACATTGCAAGTCCTAC+GGG - chr4.4:9125148-9125167 None:intergenic 45.0%
TAATCCGGAATTCGGTTAGG+AGG + chr4.4:9124877-9124896 MS.gene28397:intron 45.0%
TAGTCTCAAAAGTGGGGAAC+TGG - chr4.4:9125170-9125189 None:intergenic 45.0%
TATCAGGACCCTCCTTGAAA+GGG + chr4.4:9124323-9124342 MS.gene28397:intron 45.0%
TATGTCCACCCTTTCAAGGA+GGG - chr4.4:9124334-9124353 None:intergenic 45.0%
TCACTATGTCCACCCTTTCA+AGG - chr4.4:9124338-9124357 None:intergenic 45.0%
TCATGAACATGCACCAAGGA+GGG + chr4.4:9123613-9123632 MS.gene28397:CDS 45.0%
TGGTAATCCGGAATTCGGTT+AGG + chr4.4:9124874-9124893 MS.gene28397:intron 45.0%
TTGGGAATCCATATCGTGCA+CGG + chr4.4:9124795-9124814 MS.gene28397:intron 45.0%
! AGGAATGCTTGCTACGTGTA+AGG - chr4.4:9124770-9124789 None:intergenic 45.0%
! CTCGTTTTCAGACACAGTGT+TGG + chr4.4:9125206-9125225 MS.gene28397:CDS 45.0%
!! AGCTTTGAAACCTTGCTTGC+TGG + chr4.4:9125020-9125039 MS.gene28397:intron 45.0%
!! AGGGGTTGTTATTTCCAGGT+TGG + chr4.4:9124511-9124530 MS.gene28397:intron 45.0%
!! ATTGGTTTGGGACTACCAAG+AGG - chr4.4:9122984-9123003 None:intergenic 45.0%
!! CAACAGGGGTTGTTATTTCC+AGG + chr4.4:9124507-9124526 MS.gene28397:intron 45.0%
!! CTGGAGGTATTCCCACATTA+TGG + chr4.4:9124666-9124685 MS.gene28397:intron 45.0%
!! GTGATGCACATGTTGGTAAC+TGG + chr4.4:9125295-9125314 MS.gene28397:CDS 45.0%
!! GTTGGAAGATCTCTGAAGCT+TGG + chr4.4:9124529-9124548 MS.gene28397:CDS 45.0%
!! TATGTTGATGACTGGTGTGG+AGG + chr4.4:9123457-9123476 MS.gene28397:CDS 45.0%
!!! AGTGCTATTTTATAGGCGGC+AGG - chr4.4:9124565-9124584 None:intergenic 45.0%
AGACCATGTCCTCACGATTG+GGG - chr4.4:9123825-9123844 None:intergenic 50.0%
AGAGAATCCCGTGCACGATA+TGG - chr4.4:9124806-9124825 None:intergenic 50.0%
CCCCTGTTGAATGCAAGAAG+AGG - chr4.4:9124496-9124515 None:intergenic 50.0%
CTATGTCCACCCTTTCAAGG+AGG - chr4.4:9124335-9124354 None:intergenic 50.0%
CTCATGAACATGCACCAAGG+AGG + chr4.4:9123612-9123631 MS.gene28397:CDS 50.0%
GCTCAAAACAGTGGCAGAGT+TGG - chr4.4:9124396-9124415 None:intergenic 50.0%
GCTTCAGAGATCTTCCAACC+TGG - chr4.4:9124528-9124547 None:intergenic 50.0%
GGGTCTGGTAATCCGGAATT+CGG + chr4.4:9124869-9124888 MS.gene28397:intron 50.0%
GGTTTGCGGCTATGTGATTG+TGG + chr4.4:9123799-9123818 MS.gene28397:intron 50.0%
GTATCAGGACCCTCCTTGAA+AGG + chr4.4:9124322-9124341 MS.gene28397:intron 50.0%
TGAGTCAGGATTGCAGCCAT+TGG + chr4.4:9125331-9125350 MS.gene28397:CDS 50.0%
TGGCTGCAATCCTGACTCAA+TGG - chr4.4:9125330-9125349 None:intergenic 50.0%
TGGGAATACCTCCAGTGAGA+TGG - chr4.4:9124661-9124680 None:intergenic 50.0%
TGGGAATCCATATCGTGCAC+GGG + chr4.4:9124796-9124815 MS.gene28397:intron 50.0%
TTCCACATATCAGGCACTCC+AGG - chr4.4:9125363-9125382 None:intergenic 50.0%
TTTCTTGGTACAGCAGCGTC+CGG + chr4.4:9123589-9123608 MS.gene28397:CDS 50.0%
! CTTGGTGCATGTTCATGAGC+CGG - chr4.4:9123611-9123630 None:intergenic 50.0%
! CTTTTGAGCCATCTCACTGG+AGG + chr4.4:9124650-9124669 MS.gene28397:CDS 50.0%
! GGACTTTTGAGCCATCTCAC+TGG + chr4.4:9124647-9124666 MS.gene28397:CDS 50.0%
! TACCTGGAGTGCCTGATATG+TGG + chr4.4:9125358-9125377 MS.gene28397:CDS 50.0%
!! AGCCAGTAGCGTTTGGTTTG+CGG + chr4.4:9123785-9123804 MS.gene28397:intron 50.0%
AGCCGCAAACCAAACGCTAC+TGG - chr4.4:9123790-9123809 None:intergenic 55.0%
CCAACATGTGCATCACTGCG+AGG - chr4.4:9125291-9125310 None:intergenic 55.0%
CCTCGCAGTGATGCACATGT+TGG + chr4.4:9125288-9125307 MS.gene28397:CDS 55.0%
CGGCTCATGAACATGCACCA+AGG + chr4.4:9123609-9123628 MS.gene28397:CDS 55.0%
GCACTCCAGGTAGACACCAA+TGG - chr4.4:9125350-9125369 None:intergenic 55.0%
GCTGCAGTGATGATACCCGT+AGG + chr4.4:9125130-9125149 MS.gene28397:intron 55.0%
TGATTGTGGCCCCAATCGTG+AGG + chr4.4:9123813-9123832 MS.gene28397:intron 55.0%
! GAAGGCGTAACCAGCAAGCA+AGG - chr4.4:9125033-9125052 None:intergenic 55.0%
! TGCAGCCATTGGTGTCTACC+TGG + chr4.4:9125342-9125361 MS.gene28397:CDS 55.0%
CAGGACCCTCCTTGAAAGGG+TGG + chr4.4:9124326-9124345 MS.gene28397:intron 60.0%
GCAAGGGGGGTCTGGTAATC+CGG + chr4.4:9124862-9124881 MS.gene28397:intron 60.0%
TCTTCACCCTCCGGTTCCCA+GGG + chr4.4:9124840-9124859 MS.gene28397:intron 60.0%
TGGCCCCAATCGTGAGGACA+TGG + chr4.4:9123819-9123838 MS.gene28397:intron 60.0%
GTCTTCACCCTCCGGTTCCC+AGG + chr4.4:9124839-9124858 MS.gene28397:intron 65.0%
TACCAGACCCCCCTTGCCCT+GGG - chr4.4:9124859-9124878 None:intergenic 65.0%
TTACCAGACCCCCCTTGCCC+TGG - chr4.4:9124860-9124879 None:intergenic 65.0%
ACCCCCCTTGCCCTGGGAAC+CGG - chr4.4:9124853-9124872 None:intergenic 70.0%
ACCCTCCGGTTCCCAGGGCA+AGG + chr4.4:9124845-9124864 MS.gene28397:intron 70.0%
CCCTCCGGTTCCCAGGGCAA+GGG + chr4.4:9124846-9124865 MS.gene28397:intron 70.0%
CCCTTGCCCTGGGAACCGGA+GGG - chr4.4:9124849-9124868 None:intergenic 70.0%
CCTCCGGTTCCCAGGGCAAG+GGG + chr4.4:9124847-9124866 MS.gene28397:intron 70.0%
CTCCGGTTCCCAGGGCAAGG+GGG + chr4.4:9124848-9124867 MS.gene28397:intron 70.0%
TCCGGTTCCCAGGGCAAGGG+GGG + chr4.4:9124849-9124868 MS.gene28397:intron 70.0%
TTCCCAGGGCAAGGGGGGTC+TGG + chr4.4:9124854-9124873 MS.gene28397:intron 70.0%
CCCCTTGCCCTGGGAACCGG+AGG - chr4.4:9124850-9124869 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 9122924 9125613 9122924 ID=MS.gene28397
chr4.4 mRNA 9122924 9125613 9122924 ID=MS.gene28397.t1;Parent=MS.gene28397
chr4.4 exon 9122924 9123750 9122924 ID=MS.gene28397.t1.exon1;Parent=MS.gene28397.t1
chr4.4 CDS 9122924 9123750 9122924 ID=cds.MS.gene28397.t1;Parent=MS.gene28397.t1
chr4.4 exon 9124513 9124671 9124513 ID=MS.gene28397.t1.exon2;Parent=MS.gene28397.t1
chr4.4 CDS 9124513 9124671 9124513 ID=cds.MS.gene28397.t1;Parent=MS.gene28397.t1
chr4.4 exon 9125137 9125448 9125137 ID=MS.gene28397.t1.exon3;Parent=MS.gene28397.t1
chr4.4 CDS 9125137 9125448 9125137 ID=cds.MS.gene28397.t1;Parent=MS.gene28397.t1
chr4.4 exon 9125601 9125613 9125601 ID=MS.gene28397.t1.exon4;Parent=MS.gene28397.t1
chr4.4 CDS 9125601 9125613 9125601 ID=cds.MS.gene28397.t1;Parent=MS.gene28397.t1
Gene Sequence

>MS.gene28397

ATGAGTGGTTCACATTTGAATAAAAGCATTTCCTTCAACAGAAGATCTCATTCTCAACCTCTTGGTAGTCCCAAACCAATTATCAACCGCTTTGGATGTGTTTCTTTGAGGTTTCAAGTTCTTGTTATCATTGCTTCTGTTTTTTCCTTCTTTATAGCAATTGGTGGTGGTTACATCTATGTTCTTCCTAGTATCACACATGCTTTTTTTAATGGACAAGGTTTCTTTTCTGATCATAACAATAACAATAACAATAATTCGTTGTTGAGAAAATGTGATGTTTTTGATGGAACATGGGTTCAAGTATCTGGTTATCCTTTGTATAATGCAACTGAGTGTCCTTTTGTTGAACAAGGATTTGATTGTTTAGGAAATGGAAGGAGTGATTTGGATTTTCTTTCGTGGAGATGGAAACCTAAGAGTTGTGAAATTCCAACTTTTGATGTTGGTGCTGTTTTGGAAATGTTGAGGAGTAAAAGGGTTGTTTTTGTTGGTGATTCGATGAGTAGAACTCAATGGGAGTCTTTGATTTGTATGTTGATGACTGGTGTGGAGGATAAGACGAGTGTTTATGAAGTGAATCAGAATCAGATTACAAAGAGGATTAGGTTTTTAGGAGTTAGGTTTAGTGATTTCAATTTTACAATTGAATTTTTTCGATCAGTTTTCTTGGTACAGCAGCGTCCGGCTCATGAACATGCACCAAGGAGGGTTAAATCAACACTTTTGTTGGACAAGTTAGATGATATAAGTCATCAATGGATTGATTCAGATATTCTTATATTCAATACTGGTCACTGGTGGGTGCCATCTAAGCTTTTCCACACGTAAGGTTCCATTCTTTTCAATATTTCAACTGTAAGCCAGTAGCGTTTGGTTTGCGGCTATGTGATTGTGGCCCCAATCGTGAGGACATGGTCTTTGATTTGATATATATGTGACCACAACTCAATTGTGTTTGAGTTGCATCAGCCATATTTGTTGTAGTTAATTTTAATGTTATTCATTGCCATACTCTTCAGTCTTCATATTTCTTGCTAATTTGTTTATCAGTAGGTTTAAGGGGGGAAACTTTTCATCGAGTTTTCGTAACTGTTGACTTAGTAGTTCACAACATCCATTGTTCTCTTATTAGGTTCTCCGTCATGATTTTGAAGTTCATGATAATTATTTAAGAGAAAGACTATAAGGGTAGTTTTAGAGTTAATATAACAGGTGATGCGTGAGCTCCCAAAACATTTGACCAAAAGGCTGTTTTTTTATGTTAAACTAAGTATTTCTCAAGAGATTGTTGTCATGATTCTTTCCTTGCCACTGCTTGAAAATCAAGATGATAGACACTTAAATTTTGGTCTTCTGATTTATGCTCGTTTGCATCTTTTTGTTTGTTAATGAGGCGTATCAGGACCCTCCTTGAAAGGGTGGACATAGTGATGTATTGTTTTTCATTCTGATTCTAACTTGAGAAACCAACTCTGCCACTGTTTTGAGCAAGTATAATTACCCTTAACAAATCTGTGTTTTCATATTTTGGAATCTGTTTTTGTTTTTGGATCACTGTCAAATGATCCTCTTCTTGCATTCAACAGGGGTTGTTATTTCCAGGTTGGAAGATCTCTGAAGCTTGGGATGTCAATTCCTGCCGCCTATAAAATAGCACTCAAAACTTGGACTTCTTGGATTGAGAGAAAGATTGATAAAAATAGAACACGCGTCTTTTTTAGGACTTTTGAGCCATCTCACTGGAGGTATTCCCACATTATGGATAACATGATGCTTTATTTACATGTGTTTAGCTTTCTTTATATAATTTTTTAAAATGATACTTCAAAATTCAAACTATCCTTACACGTAGCAAGCATTCCTTAGTTTTGGGAATCCATATCGTGCACGGGATTCTCTTAACTTTTTTTTTGTCTTCACCCTCCGGTTCCCAGGGCAAGGGGGGTCTGGTAATCCGGAATTCGGTTAGGAGGTAAGTAAAGTCTTGCCAATAATTGTTCAATTCGGGATTCAAATTCAGGTTCTCCTGATCGTTTTGACCTTGACTAAAGTTCACTAACCACTTAAGCTCAACCACTTGGTTGGATTCTATAAGCTTTGAAACCTTGCTTGCTGGTTACGCCTTCTTTATAACAATATTTTCTTGTAACATAACATATGCTTATTTCATTGTTCAACAATTATTCATCTAGCTTTTATGTTTGCTGCAGTGATGATACCCGTAGGACTTGCAATGTAACCCAGTTCCCCACTTTTGAGACTAATGCAACGGAACAAAACTCGTTTTCAGACACAGTGTTGGAAGTTGTAAAGAATGTTAATTTTCCTATAAACGTTCTCCATGTTACATCTATGTCGGCTCCTCGCAGTGATGCACATGTTGGTAACTGGAATGATAATCCATTGAGTCAGGATTGCAGCCATTGGTGTCTACCTGGAGTGCCTGATATGTGGAATGAAATTATCCTGTCCCAACTTTTTACTGAATATGAAATCCCTTTTTCAGAAAATGAAACTACACAGTAAGTTCAGCTTCTTTCAAAATATCCAACTCTTAAAAGACTGAGAACTCTGCCAAAAAAGAGAGATAAAGAGTACTTTTCTTTTACTTTCAGATGCATCATTTTAAAAAAAAATGAACTACATCTAACACATTTTCTATTTCTGGATGCAGATTAGATGACTAA
Protein sequence

>MS.gene28397.t1

MSGSHLNKSISFNRRSHSQPLGSPKPIINRFGCVSLRFQVLVIIASVFSFFIAIGGGYIYVLPSITHAFFNGQGFFSDHNNNNNNNSLLRKCDVFDGTWVQVSGYPLYNATECPFVEQGFDCLGNGRSDLDFLSWRWKPKSCEIPTFDVGAVLEMLRSKRVVFVGDSMSRTQWESLICMLMTGVEDKTSVYEVNQNQITKRIRFLGVRFSDFNFTIEFFRSVFLVQQRPAHEHAPRRVKSTLLLDKLDDISHQWIDSDILIFNTGHWWVPSKLFHTGCYFQVGRSLKLGMSIPAAYKIALKTWTSWIERKIDKNRTRVFFRTFEPSHWSDDTRRTCNVTQFPTFETNATEQNSFSDTVLEVVKNVNFPINVLHVTSMSAPRSDAHVGNWNDNPLSQDCSHWCLPGVPDMWNEIILSQLFTEYEIPFSENETTQLDD