Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28399.t1 | XP_013446870.1 | 94.4 | 792 | 44 | 0 | 1 | 792 | 1 | 792 | 0.00E+00 | 1504.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28399.t1 | Q9LIH5 | 25.0 | 789 | 457 | 23 | 1 | 774 | 3 | 671 | 7.4e-27 | 124.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28399.t1 | A0A072TU14 | 94.4 | 792 | 44 | 0 | 1 | 792 | 1 | 792 | 0.0e+00 | 1504.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene28399.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050884 | MS.gene28399 | 0.820816 | 5.62E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28399.t1 | MTR_8g093480 | 94.444 | 792 | 44 | 0 | 1 | 792 | 1 | 792 | 0.0 | 1544 |
| MS.gene28399.t1 | MTR_8g093480 | 94.163 | 771 | 45 | 0 | 1 | 771 | 1 | 771 | 0.0 | 1499 |
| MS.gene28399.t1 | MTR_8g093480 | 94.393 | 749 | 42 | 0 | 44 | 792 | 1 | 749 | 0.0 | 1464 |
| MS.gene28399.t1 | MTR_8g093480 | 94.093 | 728 | 43 | 0 | 44 | 771 | 1 | 728 | 0.0 | 1417 |
| MS.gene28399.t1 | MTR_3g095960 | 50.152 | 658 | 265 | 15 | 172 | 771 | 364 | 1016 | 0.0 | 559 |
| MS.gene28399.t1 | MTR_3g095960 | 53.543 | 254 | 90 | 6 | 1 | 236 | 32 | 275 | 7.80e-57 | 211 |
| MS.gene28399.t1 | MTR_3g095960 | 50.152 | 658 | 265 | 15 | 172 | 771 | 333 | 985 | 0.0 | 559 |
| MS.gene28399.t1 | MTR_3g095960 | 53.543 | 254 | 90 | 6 | 1 | 236 | 1 | 244 | 7.95e-57 | 211 |
| MS.gene28399.t1 | MTR_2g060650 | 32.143 | 196 | 100 | 5 | 599 | 769 | 1251 | 1438 | 4.70e-17 | 86.7 |
| MS.gene28399.t1 | MTR_2g014260 | 39.744 | 78 | 47 | 0 | 693 | 770 | 806 | 883 | 1.21e-12 | 72.0 |
| MS.gene28399.t1 | MTR_2g014260 | 39.744 | 78 | 47 | 0 | 693 | 770 | 805 | 882 | 1.24e-12 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28399.t1 | AT3G18640 | 30.684 | 541 | 266 | 19 | 258 | 774 | 216 | 671 | 4.05e-41 | 161 |
| MS.gene28399.t1 | AT3G18640 | 30.684 | 541 | 266 | 19 | 258 | 774 | 216 | 671 | 4.05e-41 | 161 |
| MS.gene28399.t1 | AT3G18640 | 30.684 | 541 | 266 | 19 | 258 | 774 | 216 | 671 | 4.05e-41 | 161 |
| MS.gene28399.t1 | AT2G10553 | 60.526 | 76 | 30 | 0 | 699 | 774 | 2 | 77 | 2.75e-25 | 100 |
| MS.gene28399.t1 | AT3G26850 | 33.566 | 143 | 88 | 2 | 631 | 769 | 116 | 255 | 1.72e-18 | 86.7 |
| MS.gene28399.t1 | AT3G26850 | 33.566 | 143 | 88 | 2 | 631 | 769 | 116 | 255 | 1.72e-18 | 86.7 |
| MS.gene28399.t1 | AT2G33835 | 37.363 | 91 | 54 | 2 | 681 | 770 | 490 | 578 | 1.13e-12 | 72.0 |
Find 197 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTATAAAACCAAGTTAAA+TGG | 0.141796 | 4.4:-9076297 | None:intergenic |
| AAGCAGTAGTTCAAGGTATT+TGG | 0.172150 | 4.4:+9073059 | MS.gene28399:CDS |
| CCTCATCAGGTCCATCATTT+TGG | 0.185844 | 4.4:-9075968 | None:intergenic |
| CATTTACCAGCCCTAGATTA+AGG | 0.209423 | 4.4:+9074623 | MS.gene28399:CDS |
| GCAACTGGATCGCTCAATTT+TGG | 0.211063 | 4.4:-9074694 | None:intergenic |
| CTCATGGGGATTAGAATATC+TGG | 0.229022 | 4.4:-9074299 | None:intergenic |
| TCCTTCTTATCAATTGAAAA+TGG | 0.244006 | 4.4:-9074952 | None:intergenic |
| TTCATTGGTAGAGCTTATTA+AGG | 0.265977 | 4.4:+9076034 | MS.gene28399:CDS |
| TTACTCTCGGGTGGAAATTC+AGG | 0.278145 | 4.4:-9072789 | None:intergenic |
| GAACCTCTGACTCCCGAAAA+AGG | 0.282854 | 4.4:-9073129 | None:intergenic |
| TTGCGTGAAAACCTCATTCT+TGG | 0.284032 | 4.4:-9073102 | None:intergenic |
| TGTCTCCGGCACAGTAAATT+TGG | 0.286106 | 4.4:+9074816 | MS.gene28399:CDS |
| CAAGCCATGAATCCAGGTTC+TGG | 0.293698 | 4.4:-9074871 | None:intergenic |
| TGGCCGATGTAGATAAAGTT+TGG | 0.319460 | 4.4:+9074764 | MS.gene28399:CDS |
| CGACGAAGACTACCAAGTTT+TGG | 0.327823 | 4.4:+9073161 | MS.gene28399:CDS |
| CCCATGAATATTAGTGCAAA+TGG | 0.330779 | 4.4:+9075750 | MS.gene28399:CDS |
| ATCAAGCCAGATCCTGCTAT+TGG | 0.331025 | 4.4:+9075690 | MS.gene28399:CDS |
| CCCATTTGCACTAATATTCA+TGG | 0.335498 | 4.4:-9075751 | None:intergenic |
| ATGTCTCCTGATTGGAATTA+TGG | 0.341445 | 4.4:+9075063 | MS.gene28399:CDS |
| TGATGGGTTTGATAAAATTT+CGG | 0.356095 | 4.4:+9074432 | MS.gene28399:CDS |
| TGATCCAATGTTTGACAGTA+TGG | 0.360762 | 4.4:+9075725 | MS.gene28399:CDS |
| GCAGAAAGCTATCTTCAAAC+TGG | 0.366135 | 4.4:+9072751 | MS.gene28399:CDS |
| AGCCTATCACAAATCGGTTC+TGG | 0.370700 | 4.4:+9075471 | MS.gene28399:CDS |
| AGCCTTCCATTAGGAGCAAC+TGG | 0.371988 | 4.4:-9074709 | None:intergenic |
| GAATATAACTGCTTCCCATT+TGG | 0.376514 | 4.4:+9075326 | MS.gene28399:CDS |
| GTTATTCAGCTGTCGATGAT+AGG | 0.378174 | 4.4:+9074131 | MS.gene28399:CDS |
| CGCCCCAGAACCTGGATTCA+TGG | 0.383806 | 4.4:+9074867 | MS.gene28399:CDS |
| TGTATAAGTTTGTTAACCTT+TGG | 0.384179 | 4.4:-9076212 | None:intergenic |
| GACCTATCATCCCTTAATCT+AGG | 0.385299 | 4.4:-9074634 | None:intergenic |
| CCTCATAACTTTGCTTATCA+TGG | 0.387218 | 4.4:-9074243 | None:intergenic |
| CTTGACTTTGTCCAACCAAA+TGG | 0.387671 | 4.4:-9075341 | None:intergenic |
| GGGAGTCAGAGGTTCAAATA+AGG | 0.392634 | 4.4:+9073137 | MS.gene28399:CDS |
| TTGATGAATGTCATAGAAAC+AGG | 0.398984 | 4.4:-9075672 | None:intergenic |
| AAGGTTACTGATAAAGTAAC+TGG | 0.399020 | 4.4:+9076122 | MS.gene28399:CDS |
| ATTTACCAGCCCTAGATTAA+GGG | 0.399284 | 4.4:+9074624 | MS.gene28399:CDS |
| AGCGATCCAGTTGCTCCTAA+TGG | 0.403520 | 4.4:+9074703 | MS.gene28399:CDS |
| GGTTTGAGGAATGGAACAAT+AGG | 0.403730 | 4.4:+9073238 | MS.gene28399:CDS |
| TTTCGGCAGATGAATCATCT+AGG | 0.418420 | 4.4:+9074449 | MS.gene28399:CDS |
| TTAGAATATCTGGGTCCATC+TGG | 0.423271 | 4.4:-9074289 | None:intergenic |
| TGCAAAGGGAAGGTGTAGAA+TGG | 0.424935 | 4.4:+9074375 | MS.gene28399:CDS |
| CCTTCAATAATTCTTGCTCC+TGG | 0.430287 | 4.4:-9075384 | None:intergenic |
| GAGAGTAGCCTTTGCATCAC+AGG | 0.432367 | 4.4:-9075619 | None:intergenic |
| TTATAAAACAATTGTGAAGA+AGG | 0.434641 | 4.4:+9076103 | MS.gene28399:CDS |
| TCATCTCTTAGCCTTCCATT+AGG | 0.435290 | 4.4:-9074718 | None:intergenic |
| AAGCCATGAATCCAGGTTCT+GGG | 0.436724 | 4.4:-9074870 | None:intergenic |
| GGCCGATGTAGATAAAGTTT+GGG | 0.438991 | 4.4:+9074765 | MS.gene28399:CDS |
| AATCTTTATACTAGGAGAAA+AGG | 0.440601 | 4.4:-9075784 | None:intergenic |
| CCATGAATATTAGTGCAAAT+GGG | 0.440948 | 4.4:+9075751 | MS.gene28399:CDS |
| AGCAAAGTTATGAGGATAGC+AGG | 0.443006 | 4.4:+9074251 | MS.gene28399:CDS |
| TTGCTGACTCCGTTCTGAGT+TGG | 0.443876 | 4.4:-9075501 | None:intergenic |
| TCTATAAAACCAAGTTAAAT+GGG | 0.444575 | 4.4:-9076296 | None:intergenic |
| CAATTGTTGCATCCAAAACT+TGG | 0.444892 | 4.4:-9073173 | None:intergenic |
| CAGAACCTGGATTCATGGCT+TGG | 0.445159 | 4.4:+9074872 | MS.gene28399:CDS |
| TACAGAAGAGAATAGTCCTA+TGG | 0.445294 | 4.4:+9075935 | MS.gene28399:CDS |
| ATCATAGGCGCCCCAGAACC+TGG | 0.452733 | 4.4:+9074859 | MS.gene28399:CDS |
| TTCAATCCAATAGCAGGATC+TGG | 0.454738 | 4.4:-9075696 | None:intergenic |
| TGGCCAATGAACGATGGATC+GGG | 0.459051 | 4.4:+9074892 | MS.gene28399:CDS |
| TACAATATGAAAGTGTCTCC+AGG | 0.459715 | 4.4:+9073216 | MS.gene28399:CDS |
| GATTTCCGTCATATGTATGA+AGG | 0.459922 | 4.4:+9076257 | MS.gene28399:CDS |
| ATGCTCATCTTTAATATGAC+TGG | 0.462728 | 4.4:-9075097 | None:intergenic |
| AAAGGTTAACAAACTTATAC+AGG | 0.465005 | 4.4:+9076214 | MS.gene28399:CDS |
| GATGCAAAGGCTACTCTCTT+CGG | 0.465991 | 4.4:+9075624 | MS.gene28399:CDS |
| GGGAAAGGGAAATTGATAGA+AGG | 0.468456 | 4.4:+9074470 | MS.gene28399:CDS |
| TGTCCTAGGTTAGATAATAG+TGG | 0.470060 | 4.4:-9075831 | None:intergenic |
| ACATGCCTCCACCTACTGAC+TGG | 0.474548 | 4.4:-9075023 | None:intergenic |
| TTCTGTTCCTGTCTAAGCTA+TGG | 0.475586 | 4.4:-9074915 | None:intergenic |
| CTTCAATAATTCTTGCTCCT+GGG | 0.479137 | 4.4:-9075383 | None:intergenic |
| GCAAAGGGAAGGTGTAGAAT+GGG | 0.479280 | 4.4:+9074376 | MS.gene28399:CDS |
| CTCGCACCATAATTCCAATC+AGG | 0.479580 | 4.4:-9075069 | None:intergenic |
| TCGTGCATTTAAATCTTCAT+TGG | 0.481043 | 4.4:+9076019 | MS.gene28399:CDS |
| ATAACTGCTTCCCATTTGGT+TGG | 0.482978 | 4.4:+9075330 | MS.gene28399:CDS |
| GAGAATAATCCCCACTCTCA+TGG | 0.492546 | 4.4:-9074315 | None:intergenic |
| CTCTTCGGAAGCAAAATTGA+AGG | 0.493466 | 4.4:+9075639 | MS.gene28399:CDS |
| GGAGTGTTACTGATGTGGTT+TGG | 0.493594 | 4.4:-9074532 | None:intergenic |
| ACTGATTTAGTTGCTGTCTC+CGG | 0.494397 | 4.4:+9074802 | MS.gene28399:CDS |
| ATTGGCCAAGCCATGAATCC+AGG | 0.494986 | 4.4:-9074877 | None:intergenic |
| GTCCAGAACCGATTTGTGAT+AGG | 0.498070 | 4.4:-9075473 | None:intergenic |
| TACTGTTTCAATCCAATAGC+AGG | 0.498333 | 4.4:-9075702 | None:intergenic |
| CTCAACCAAATTTACTGTGC+CGG | 0.499415 | 4.4:-9074821 | None:intergenic |
| GAGTAATCAAGGTGAAGATC+AGG | 0.501418 | 4.4:+9074660 | MS.gene28399:CDS |
| GCTTGCATTTATTATGCAAA+GGG | 0.501531 | 4.4:+9074361 | MS.gene28399:CDS |
| TGTCTCCAGGGTTTGAGGAA+TGG | 0.501913 | 4.4:+9073229 | MS.gene28399:CDS |
| TTGTTCCATTCCTCAAACCC+TGG | 0.503911 | 4.4:-9073234 | None:intergenic |
| TGGCCCGATCCATCGTTCAT+TGG | 0.506131 | 4.4:-9074895 | None:intergenic |
| AGAATAATCCCCACTCTCAT+GGG | 0.507875 | 4.4:-9074314 | None:intergenic |
| ATGAACAGATGTCTCCTGAT+TGG | 0.507885 | 4.4:+9075055 | MS.gene28399:CDS |
| TTCAATAATTCTTGCTCCTG+GGG | 0.510891 | 4.4:-9075382 | None:intergenic |
| CCATGATAAGCAAAGTTATG+AGG | 0.511629 | 4.4:+9074243 | MS.gene28399:CDS |
| TTGCCAGGTCTAGGAGAAGT+AGG | 0.514201 | 4.4:+9074083 | MS.gene28399:intron |
| GTAGGTGGAGGCATGTGGCC+TGG | 0.514213 | 4.4:+9075030 | MS.gene28399:CDS |
| TTTATACTAGGAGAAAAGGT+TGG | 0.514656 | 4.4:-9075780 | None:intergenic |
| TGAACCCTTCATACATATGA+CGG | 0.515019 | 4.4:-9076262 | None:intergenic |
| GAAAGTGTCTCCAGGGTTTG+AGG | 0.515239 | 4.4:+9073224 | MS.gene28399:CDS |
| AGTAAGCAGCAAGTTGCTCC+AGG | 0.516368 | 4.4:+9075126 | MS.gene28399:CDS |
| CAAGAAAACAAAGGACGCGA+AGG | 0.517471 | 4.4:+9075992 | MS.gene28399:CDS |
| CTCGCACATATCCTCGGAAC+TGG | 0.519764 | 4.4:+9075561 | MS.gene28399:CDS |
| CTGAAACCAACATGGAAAGA+TGG | 0.520966 | 4.4:+9076062 | MS.gene28399:CDS |
| TTGACTTTGTCCAACCAAAT+GGG | 0.521411 | 4.4:-9075340 | None:intergenic |
| ACCTATCATCCCTTAATCTA+GGG | 0.523142 | 4.4:-9074633 | None:intergenic |
| TTAGAGTAGAATGAACTTGT+GGG | 0.523416 | 4.4:-9075593 | None:intergenic |
| TTGGCCAATGAACGATGGAT+CGG | 0.523666 | 4.4:+9074891 | MS.gene28399:CDS |
| CATAGAGCAATCATTCAAGC+AGG | 0.525287 | 4.4:+9074495 | MS.gene28399:CDS |
| ATCATCCCTTAATCTAGGGC+TGG | 0.527217 | 4.4:-9074629 | None:intergenic |
| CGGCACAGTAAATTTGGTTG+AGG | 0.530921 | 4.4:+9074822 | MS.gene28399:CDS |
| TTACTAAAAGCAGTAGTTCA+AGG | 0.532963 | 4.4:+9073052 | MS.gene28399:CDS |
| ACAGAAGAGAATAGTCCTAT+GGG | 0.535719 | 4.4:+9075936 | MS.gene28399:CDS |
| AATGCAAGCCTATCACAAAT+CGG | 0.539727 | 4.4:+9075465 | MS.gene28399:CDS |
| GCCCTAGATTAAGGGATGAT+AGG | 0.542024 | 4.4:+9074632 | MS.gene28399:CDS |
| GTTTGAGGAATGGAACAATA+GGG | 0.542357 | 4.4:+9073239 | MS.gene28399:CDS |
| AGATGAATCATCTAGGGAAA+GGG | 0.544094 | 4.4:+9074456 | MS.gene28399:CDS |
| ATTCTAATCCCCATGAGAGT+GGG | 0.544443 | 4.4:+9074305 | MS.gene28399:CDS |
| CATGCCTCCACCTACTGACT+GGG | 0.545247 | 4.4:-9075022 | None:intergenic |
| GGAGACATGGACCAAAATGA+TGG | 0.546029 | 4.4:+9075957 | MS.gene28399:CDS |
| AGCTTGCATTTATTATGCAA+AGG | 0.547591 | 4.4:+9074360 | MS.gene28399:CDS |
| TTTAGAGTAGAATGAACTTG+TGG | 0.547988 | 4.4:-9075594 | None:intergenic |
| CTCATTTCCCAGTCAGTAGG+TGG | 0.549087 | 4.4:+9075015 | MS.gene28399:CDS |
| AAGAAAACAAAGGACGCGAA+GGG | 0.550204 | 4.4:+9075993 | MS.gene28399:CDS |
| ATACTAGGAGAAAAGGTTGG+AGG | 0.551278 | 4.4:-9075777 | None:intergenic |
| GCCTCTCTCGCACATATCCT+CGG | 0.552753 | 4.4:+9075555 | MS.gene28399:CDS |
| CCAGGAGCAAGAATTATTGA+AGG | 0.556088 | 4.4:+9075384 | MS.gene28399:CDS |
| CCATTTGCACTAATATTCAT+GGG | 0.556712 | 4.4:-9075750 | None:intergenic |
| AGTCAGTAGGTGGAGGCATG+TGG | 0.556809 | 4.4:+9075025 | MS.gene28399:CDS |
| GCAACTAAATCAGTCTGCAT+TGG | 0.556935 | 4.4:-9074793 | None:intergenic |
| GATGATAGATGTGGTTCAGA+TGG | 0.559177 | 4.4:+9074736 | MS.gene28399:CDS |
| CAGATGAATCATCTAGGGAA+AGG | 0.559379 | 4.4:+9074455 | MS.gene28399:CDS |
| TGATGTGGTTTGGATAATGC+TGG | 0.560096 | 4.4:-9074522 | None:intergenic |
| TTCGGCAGATGAATCATCTA+GGG | 0.560292 | 4.4:+9074450 | MS.gene28399:CDS |
| TTTATCAGTTTCGAAACCAA+AGG | 0.562819 | 4.4:+9076196 | MS.gene28399:CDS |
| GATCGGGCCATAGCTTAGAC+AGG | 0.565642 | 4.4:+9074908 | MS.gene28399:CDS |
| GAAAGTAAACACAGGCCAGA+TGG | 0.570539 | 4.4:+9074274 | MS.gene28399:CDS |
| GCATTTATTATGCAAAGGGA+AGG | 0.573665 | 4.4:+9074365 | MS.gene28399:CDS |
| CAGAAAGCTATCTTCAAACT+GGG | 0.573681 | 4.4:+9072752 | MS.gene28399:CDS |
| TCATGGGGATTAGAATATCT+GGG | 0.574011 | 4.4:-9074298 | None:intergenic |
| TCAAGGTGAAGATCAGGTGT+TGG | 0.575506 | 4.4:+9074666 | MS.gene28399:CDS |
| GTGCATCATGACAATTCTGA+TGG | 0.575886 | 4.4:+9074415 | MS.gene28399:CDS |
| AGTAACTGGTACAGTACAGC+GGG | 0.578110 | 4.4:+9076136 | MS.gene28399:CDS |
| GCTGTTGGGAACTGCAGAAG+AGG | 0.580264 | 4.4:+9074199 | MS.gene28399:CDS |
| CCAACAGCAAAATCTCTACA+AGG | 0.582187 | 4.4:-9074184 | None:intergenic |
| TACTAGGAGAAAAGGTTGGA+GGG | 0.584072 | 4.4:-9075776 | None:intergenic |
| GGCTCCATACTGTCAAACAT+TGG | 0.585746 | 4.4:-9075729 | None:intergenic |
| GATAGGAACAGAACGAGGGA+TGG | 0.586418 | 4.4:+9074148 | MS.gene28399:CDS |
| GATAGGTCGAGGAGTAATCA+AGG | 0.586872 | 4.4:+9074649 | MS.gene28399:CDS |
| ATTCTCATTTCCCAGTCAGT+AGG | 0.589106 | 4.4:+9075012 | MS.gene28399:CDS |
| ATGTGGTTCAGATGGCAGAA+TGG | 0.591695 | 4.4:+9074744 | MS.gene28399:CDS |
| TATTCTAATCCCCATGAGAG+TGG | 0.592838 | 4.4:+9074304 | MS.gene28399:CDS |
| TCCGAGGATATGTGCGAGAG+AGG | 0.592954 | 4.4:-9075556 | None:intergenic |
| ATTTCCGTCATATGTATGAA+GGG | 0.593129 | 4.4:+9076258 | MS.gene28399:CDS |
| GGTCTAGGAGAAGTAGGAGT+CGG | 0.593388 | 4.4:+9074089 | MS.gene28399:intron |
| GCAAAGTTATGAGGATAGCA+GGG | 0.598476 | 4.4:+9074252 | MS.gene28399:CDS |
| ATACGCTAAAACCAAGAATG+AGG | 0.598870 | 4.4:+9073091 | MS.gene28399:CDS |
| GGAGACATCTGTTCATCACC+AGG | 0.599211 | 4.4:-9075048 | None:intergenic |
| AGAGTAGCCTTTGCATCACA+GGG | 0.602543 | 4.4:-9075618 | None:intergenic |
| ATCCAGTTGCTCCTAATGGA+AGG | 0.603229 | 4.4:+9074707 | MS.gene28399:CDS |
| ACAATTGCAAAAGACACTGA+TGG | 0.604078 | 4.4:+9073189 | MS.gene28399:CDS |
| TCTAAAGCCCTGTGATGCAA+AGG | 0.604733 | 4.4:+9075611 | MS.gene28399:CDS |
| ATCCCAAACTTTATCTACAT+CGG | 0.604953 | 4.4:-9074767 | None:intergenic |
| ATTTCCCAGTCAGTAGGTGG+AGG | 0.605746 | 4.4:+9075018 | MS.gene28399:CDS |
| TCTTCGGAAGCAAAATTGAA+GGG | 0.610203 | 4.4:+9075640 | MS.gene28399:CDS |
| GATTAAGGGATGATAGGTCG+AGG | 0.611243 | 4.4:+9074638 | MS.gene28399:CDS |
| GAATAGTCCTATGGGAGACA+TGG | 0.612755 | 4.4:+9075944 | MS.gene28399:CDS |
| TGCAAGGAGTGTTACTGATG+TGG | 0.613717 | 4.4:-9074537 | None:intergenic |
| ACAATATGAAAGTGTCTCCA+GGG | 0.615729 | 4.4:+9073217 | MS.gene28399:CDS |
| CATGAATATTAGTGCAAATG+GGG | 0.616718 | 4.4:+9075752 | MS.gene28399:CDS |
| AAACAGGCCTTACTCTCGGG+TGG | 0.618405 | 4.4:-9072798 | None:intergenic |
| AGCCATGAATCCAGGTTCTG+GGG | 0.621203 | 4.4:-9074869 | None:intergenic |
| TTCTAATCCCCATGAGAGTG+GGG | 0.622227 | 4.4:+9074306 | MS.gene28399:CDS |
| GAATAACTAAAACCATGTGG+AGG | 0.622897 | 4.4:-9074115 | None:intergenic |
| TCGATGATAGGAACAGAACG+AGG | 0.623889 | 4.4:+9074143 | MS.gene28399:CDS |
| TCAATAATTCTTGCTCCTGG+GGG | 0.624254 | 4.4:-9075381 | None:intergenic |
| AGGAGATTCTGAAACCAACA+TGG | 0.625902 | 4.4:+9076054 | MS.gene28399:CDS |
| GGACATACTCCAACTCAGAA+CGG | 0.635435 | 4.4:+9075492 | MS.gene28399:CDS |
| ATGGCTTGGCCAATGAACGA+TGG | 0.638310 | 4.4:+9074886 | MS.gene28399:CDS |
| GATGTAGATAAAGTTTGGGA+TGG | 0.639080 | 4.4:+9074769 | MS.gene28399:CDS |
| ATAAGAAGGAAGCCAACTGT+AGG | 0.639391 | 4.4:+9074965 | MS.gene28399:CDS |
| CCACCACTATTATCTAACCT+AGG | 0.640445 | 4.4:+9075828 | MS.gene28399:CDS |
| AATAACTAAAACCATGTGGA+GGG | 0.640970 | 4.4:-9074114 | None:intergenic |
| GAAGGAAGCCAACTGTAGGA+CGG | 0.641559 | 4.4:+9074969 | MS.gene28399:CDS |
| CCAAAATGATGGACCTGATG+AGG | 0.644316 | 4.4:+9075968 | MS.gene28399:CDS |
| TGCATCATGACAATTCTGAT+GGG | 0.655307 | 4.4:+9074416 | MS.gene28399:CDS |
| AGAAAACAAAGGACGCGAAG+GGG | 0.656474 | 4.4:+9075994 | MS.gene28399:CDS |
| CTGGGGAGTTAGATGAGCGG+AGG | 0.656706 | 4.4:+9072726 | None:intergenic |
| CCTAGGTTAGATAATAGTGG+TGG | 0.658942 | 4.4:-9075828 | None:intergenic |
| TATGTGCGAGAGAGGCTGAG+AGG | 0.660778 | 4.4:-9075548 | None:intergenic |
| GAATAATCCCCACTCTCATG+GGG | 0.662424 | 4.4:-9074313 | None:intergenic |
| CATGGTGAAGAAAATGACAA+TGG | 0.665590 | 4.4:-9074225 | None:intergenic |
| GGAGCTGCTGACCAGTTCCG+AGG | 0.666304 | 4.4:-9075572 | None:intergenic |
| AAACTTATACAGGTCAGTGG+TGG | 0.669868 | 4.4:+9076224 | MS.gene28399:CDS |
| AGGCTAAGAGATGATAGATG+TGG | 0.672795 | 4.4:+9074727 | MS.gene28399:CDS |
| AACAAACTTATACAGGTCAG+TGG | 0.674602 | 4.4:+9076221 | MS.gene28399:CDS |
| AGGAGTCGGAGCCCTCCACA+TGG | 0.676758 | 4.4:+9074103 | MS.gene28399:CDS |
| GCTGAATAACTAAAACCATG+TGG | 0.683862 | 4.4:-9074118 | None:intergenic |
| ATAGAGCAATCATTCAAGCA+GGG | 0.687583 | 4.4:+9074496 | MS.gene28399:CDS |
| TGATGAGGCCAAGAAAACAA+AGG | 0.690243 | 4.4:+9075983 | MS.gene28399:CDS |
| ATAGCAGGGAAAGTAAACAC+AGG | 0.696445 | 4.4:+9074266 | MS.gene28399:CDS |
| CGATGATAGGAACAGAACGA+GGG | 0.705763 | 4.4:+9074144 | MS.gene28399:CDS |
| AAGTAACTGGTACAGTACAG+CGG | 0.725762 | 4.4:+9076135 | MS.gene28399:CDS |
| GCTCTGGGGAGTTAGATGAG+CGG | 0.746984 | 4.4:+9072723 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACTACTTATTATTATTT+TGG | + | chr4.4:9073411-9073430 | MS.gene28399:intron | 10.0% |
| !!! | TTCTTTTAATTTAATAACAA+TGG | - | chr4.4:9075235-9075254 | None:intergenic | 10.0% |
| !!! | AATTGTTTTATAATCTTCTT+TGG | - | chr4.4:9076096-9076115 | None:intergenic | 15.0% |
| !! | AAAGATAGAAAATTTCTTTC+AGG | - | chr4.4:9073997-9074016 | None:intergenic | 20.0% |
| !! | CAATATGCAAAAAATGATTA+TGG | + | chr4.4:9073270-9073289 | MS.gene28399:CDS | 20.0% |
| !! | GTAGTATAAAATCTAATACT+CGG | - | chr4.4:9073399-9073418 | None:intergenic | 20.0% |
| !! | TATAAAGAAATGAGTTGTTA+AGG | - | chr4.4:9073872-9073891 | None:intergenic | 20.0% |
| !! | TTATAAAACAATTGTGAAGA+AGG | + | chr4.4:9076103-9076122 | MS.gene28399:CDS | 20.0% |
| !!! | TTATAGATACCTATTTTCTT+TGG | + | chr4.4:9073887-9073906 | MS.gene28399:intron | 20.0% |
| !!! | TTTAATTATCTGCTTTTCTT+TGG | + | chr4.4:9074057-9074076 | MS.gene28399:intron | 20.0% |
| !!! | TTTTGATGATTCTCTTAAAA+AGG | + | chr4.4:9075857-9075876 | MS.gene28399:CDS | 20.0% |
| !!! | TTTTTTGGAATCTTTATACT+AGG | - | chr4.4:9075795-9075814 | None:intergenic | 20.0% |
| ! | AAAACACAAACTGTATTCTA+TGG | - | chr4.4:9072912-9072931 | None:intergenic | 25.0% |
| ! | AAAGGTTAACAAACTTATAC+AGG | + | chr4.4:9076214-9076233 | MS.gene28399:CDS | 25.0% |
| ! | AATCTTTATACTAGGAGAAA+AGG | - | chr4.4:9075787-9075806 | None:intergenic | 25.0% |
| ! | ACATTCTAACCAAAGAAAAT+AGG | - | chr4.4:9073899-9073918 | None:intergenic | 25.0% |
| ! | ATGTCTATAGATTGTTATGA+CGG | + | chr4.4:9072858-9072877 | MS.gene28399:intron | 25.0% |
| ! | ATTAATTAGTATTGCAGTTG+TGG | - | chr4.4:9073558-9073577 | None:intergenic | 25.0% |
| ! | GTATACAAGTTTATTATCAC+CGG | - | chr4.4:9073605-9073624 | None:intergenic | 25.0% |
| ! | TCAAAAGGGTAGAAAAATTA+AGG | - | chr4.4:9075278-9075297 | None:intergenic | 25.0% |
| ! | TCAGCAATAAAATAATTACC+TGG | - | chr4.4:9075147-9075166 | None:intergenic | 25.0% |
| ! | TCCTTCTTATCAATTGAAAA+TGG | - | chr4.4:9074955-9074974 | None:intergenic | 25.0% |
| ! | TTAATTAGTATTGCAGTTGT+GGG | - | chr4.4:9073557-9073576 | None:intergenic | 25.0% |
| !! | AAAAAAATGTACGTTGATTG+TGG | + | chr4.4:9073805-9073824 | MS.gene28399:intron | 25.0% |
| !! | AATCATCAAAATTTTGTCCT+AGG | - | chr4.4:9075848-9075867 | None:intergenic | 25.0% |
| !! | ACCATTTTCAATTGATAAGA+AGG | + | chr4.4:9074951-9074970 | MS.gene28399:CDS | 25.0% |
| !! | ATTGTAGATTTTCTCATGAT+AGG | + | chr4.4:9074596-9074615 | MS.gene28399:CDS | 25.0% |
| !! | ATTTTTATGTGACATTTCAG+TGG | + | chr4.4:9073687-9073706 | MS.gene28399:intron | 25.0% |
| !! | TTATTTTCAGATTGAGAGAT+TGG | - | chr4.4:9075912-9075931 | None:intergenic | 25.0% |
| !!! | ATCAACGTACATTTTTTTAG+AGG | - | chr4.4:9073803-9073822 | None:intergenic | 25.0% |
| !!! | CTTGCAAATTTTTTGCTTTT+GGG | + | chr4.4:9074554-9074573 | MS.gene28399:CDS | 25.0% |
| !!! | TGATGGGTTTGATAAAATTT+CGG | + | chr4.4:9074432-9074451 | MS.gene28399:CDS | 25.0% |
| !!! | TGTATAAGTTTGTTAACCTT+TGG | - | chr4.4:9076215-9076234 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTCTTCTTCATTT+AGG | + | chr4.4:9073428-9073447 | MS.gene28399:intron | 25.0% |
| AAAGATTCCAAAAAATGCAG+TGG | + | chr4.4:9075800-9075819 | MS.gene28399:CDS | 30.0% | |
| AAGGTTACTGATAAAGTAAC+TGG | + | chr4.4:9076122-9076141 | MS.gene28399:CDS | 30.0% | |
| AATAACTAAAACCATGTGGA+GGG | - | chr4.4:9074117-9074136 | None:intergenic | 30.0% | |
| AGCCAAAGTTTCTTAATCTA+GGG | - | chr4.4:9073748-9073767 | None:intergenic | 30.0% | |
| AGCTTGCATTTATTATGCAA+AGG | + | chr4.4:9074360-9074379 | MS.gene28399:CDS | 30.0% | |
| ATCCCAAACTTTATCTACAT+CGG | - | chr4.4:9074770-9074789 | None:intergenic | 30.0% | |
| ATGCAAAAAATGATTATGGC+AGG | + | chr4.4:9073274-9073293 | MS.gene28399:CDS | 30.0% | |
| ATGCTCATCTTTAATATGAC+TGG | - | chr4.4:9075100-9075119 | None:intergenic | 30.0% | |
| ATTTCCGTCATATGTATGAA+GGG | + | chr4.4:9076258-9076277 | MS.gene28399:CDS | 30.0% | |
| CATGAATATTAGTGCAAATG+GGG | + | chr4.4:9075752-9075771 | MS.gene28399:CDS | 30.0% | |
| CCAAAAGCAAAAAATTTGCA+AGG | - | chr4.4:9074556-9074575 | None:intergenic | 30.0% | |
| CCATGAATATTAGTGCAAAT+GGG | + | chr4.4:9075751-9075770 | MS.gene28399:CDS | 30.0% | |
| CCATTTGCACTAATATTCAT+GGG | - | chr4.4:9075753-9075772 | None:intergenic | 30.0% | |
| GACAACAAAAATGGAATCAT+AGG | + | chr4.4:9074844-9074863 | MS.gene28399:CDS | 30.0% | |
| GCTTGCATTTATTATGCAAA+GGG | + | chr4.4:9074361-9074380 | MS.gene28399:CDS | 30.0% | |
| TAAAAAGGAGACTAACGAAA+CGG | + | chr4.4:9075872-9075891 | MS.gene28399:CDS | 30.0% | |
| TAGCCAAAGTTTCTTAATCT+AGG | - | chr4.4:9073749-9073768 | None:intergenic | 30.0% | |
| TCGTGCATTTAAATCTTCAT+TGG | + | chr4.4:9076019-9076038 | MS.gene28399:CDS | 30.0% | |
| TTACTAAAAGCAGTAGTTCA+AGG | + | chr4.4:9073052-9073071 | MS.gene28399:CDS | 30.0% | |
| TTAGAGTAGAATGAACTTGT+GGG | - | chr4.4:9075596-9075615 | None:intergenic | 30.0% | |
| TTCATTGGTAGAGCTTATTA+AGG | + | chr4.4:9076034-9076053 | MS.gene28399:CDS | 30.0% | |
| TTGATGAATGTCATAGAAAC+AGG | - | chr4.4:9075675-9075694 | None:intergenic | 30.0% | |
| TTTATACTAGGAGAAAAGGT+TGG | - | chr4.4:9075783-9075802 | None:intergenic | 30.0% | |
| TTTATCAGTTTCGAAACCAA+AGG | + | chr4.4:9076196-9076215 | MS.gene28399:CDS | 30.0% | |
| ! | AATTTTTCTACCCTTTTGAC+AGG | + | chr4.4:9075279-9075298 | MS.gene28399:intron | 30.0% |
| ! | ATTTTACCATCTTTCCATGT+TGG | - | chr4.4:9076071-9076090 | None:intergenic | 30.0% |
| ! | GTTTAGAAGCTAAAGCTTTT+AGG | + | chr4.4:9073776-9073795 | MS.gene28399:intron | 30.0% |
| ! | TTCATTTAGGATTGAGTCTA+AGG | + | chr4.4:9073441-9073460 | MS.gene28399:intron | 30.0% |
| ! | TTTAGAGTAGAATGAACTTG+TGG | - | chr4.4:9075597-9075616 | None:intergenic | 30.0% |
| ! | TTTTCTCAGTTGAAAGTTTC+TGG | - | chr4.4:9075419-9075438 | None:intergenic | 30.0% |
| !! | TTTTTGCTTTTGGGAATTGT+CGG | + | chr4.4:9074563-9074582 | MS.gene28399:CDS | 30.0% |
| !!! | CCTTGCAAATTTTTTGCTTT+TGG | + | chr4.4:9074553-9074572 | MS.gene28399:CDS | 30.0% |
| AACAAACTTATACAGGTCAG+TGG | + | chr4.4:9076221-9076240 | MS.gene28399:CDS | 35.0% | |
| AATGCAAGCCTATCACAAAT+CGG | + | chr4.4:9075465-9075484 | MS.gene28399:CDS | 35.0% | |
| ACAATTGCAAAAGACACTGA+TGG | + | chr4.4:9073189-9073208 | MS.gene28399:CDS | 35.0% | |
| ACAGAAGAGAATAGTCCTAT+GGG | + | chr4.4:9075936-9075955 | MS.gene28399:CDS | 35.0% | |
| ACCTATCATCCCTTAATCTA+GGG | - | chr4.4:9074636-9074655 | None:intergenic | 35.0% | |
| AGATGAATCATCTAGGGAAA+GGG | + | chr4.4:9074456-9074475 | MS.gene28399:CDS | 35.0% | |
| AGCCCTAGATTAAGAAACTT+TGG | + | chr4.4:9073743-9073762 | MS.gene28399:intron | 35.0% | |
| ATACGCTAAAACCAAGAATG+AGG | + | chr4.4:9073091-9073110 | MS.gene28399:CDS | 35.0% | |
| ATAGAGCAATCATTCAAGCA+GGG | + | chr4.4:9074496-9074515 | MS.gene28399:CDS | 35.0% | |
| ATGTCTCCTGATTGGAATTA+TGG | + | chr4.4:9075063-9075082 | MS.gene28399:CDS | 35.0% | |
| ATTTACCAGCCCTAGATTAA+GGG | + | chr4.4:9074624-9074643 | MS.gene28399:CDS | 35.0% | |
| CAATTGTTGCATCCAAAACT+TGG | - | chr4.4:9073176-9073195 | None:intergenic | 35.0% | |
| CAGAAAGCTATCTTCAAACT+GGG | + | chr4.4:9072752-9072771 | MS.gene28399:CDS | 35.0% | |
| CATGGTGAAGAAAATGACAA+TGG | - | chr4.4:9074228-9074247 | None:intergenic | 35.0% | |
| CCATGATAAGCAAAGTTATG+AGG | + | chr4.4:9074243-9074262 | MS.gene28399:CDS | 35.0% | |
| CCCATGAATATTAGTGCAAA+TGG | + | chr4.4:9075750-9075769 | MS.gene28399:CDS | 35.0% | |
| CCCATTTGCACTAATATTCA+TGG | - | chr4.4:9075754-9075773 | None:intergenic | 35.0% | |
| CCTCATAACTTTGCTTATCA+TGG | - | chr4.4:9074246-9074265 | None:intergenic | 35.0% | |
| CTTCAATAATTCTTGCTCCT+GGG | - | chr4.4:9075386-9075405 | None:intergenic | 35.0% | |
| GAATAACTAAAACCATGTGG+AGG | - | chr4.4:9074118-9074137 | None:intergenic | 35.0% | |
| GAATATAACTGCTTCCCATT+TGG | + | chr4.4:9075326-9075345 | MS.gene28399:CDS | 35.0% | |
| GATGTAGATAAAGTTTGGGA+TGG | + | chr4.4:9074769-9074788 | MS.gene28399:CDS | 35.0% | |
| GATTTCCGTCATATGTATGA+AGG | + | chr4.4:9076257-9076276 | MS.gene28399:CDS | 35.0% | |
| GCATTTATTATGCAAAGGGA+AGG | + | chr4.4:9074365-9074384 | MS.gene28399:CDS | 35.0% | |
| GCTGAATAACTAAAACCATG+TGG | - | chr4.4:9074121-9074140 | None:intergenic | 35.0% | |
| GGCATAAGTTCTTCAGAATA+TGG | + | chr4.4:9072879-9072898 | MS.gene28399:intron | 35.0% | |
| GTTTGAGGAATGGAACAATA+GGG | + | chr4.4:9073239-9073258 | MS.gene28399:CDS | 35.0% | |
| TACAGAAGAGAATAGTCCTA+TGG | + | chr4.4:9075935-9075954 | MS.gene28399:CDS | 35.0% | |
| TACTGTTTCAATCCAATAGC+AGG | - | chr4.4:9075705-9075724 | None:intergenic | 35.0% | |
| TCATGGGGATTAGAATATCT+GGG | - | chr4.4:9074301-9074320 | None:intergenic | 35.0% | |
| TCTTCGGAAGCAAAATTGAA+GGG | + | chr4.4:9075640-9075659 | MS.gene28399:CDS | 35.0% | |
| TGAACCCTTCATACATATGA+CGG | - | chr4.4:9076265-9076284 | None:intergenic | 35.0% | |
| TGATCCAATGTTTGACAGTA+TGG | + | chr4.4:9075725-9075744 | MS.gene28399:CDS | 35.0% | |
| TGCATCATGACAATTCTGAT+GGG | + | chr4.4:9074416-9074435 | MS.gene28399:CDS | 35.0% | |
| TGTCCTAGGTTAGATAATAG+TGG | - | chr4.4:9075834-9075853 | None:intergenic | 35.0% | |
| TTCAATAATTCTTGCTCCTG+GGG | - | chr4.4:9075385-9075404 | None:intergenic | 35.0% | |
| TTGACTTTGTCCAACCAAAT+GGG | - | chr4.4:9075343-9075362 | None:intergenic | 35.0% | |
| TTGGTTGAGGACAACAAAAA+TGG | + | chr4.4:9074835-9074854 | MS.gene28399:CDS | 35.0% | |
| ! | AACCATTAGTTTCCAACATC+AGG | - | chr4.4:9073337-9073356 | None:intergenic | 35.0% |
| ! | AAGCAGTAGTTCAAGGTATT+TGG | + | chr4.4:9073059-9073078 | MS.gene28399:CDS | 35.0% |
| ! | ACCATTAGTTTCCAACATCA+GGG | - | chr4.4:9073336-9073355 | None:intergenic | 35.0% |
| ! | GCTTTTAGTAACACCTGTAA+AGG | - | chr4.4:9073043-9073062 | None:intergenic | 35.0% |
| ! | GTTTCTTAATCTAGGGCTAT+AGG | - | chr4.4:9073741-9073760 | None:intergenic | 35.0% |
| ! | TGGATATTTTCAGACGCAAT+TGG | + | chr4.4:9074031-9074050 | MS.gene28399:intron | 35.0% |
| !! | ACAATATGAAAGTGTCTCCA+GGG | + | chr4.4:9073217-9073236 | MS.gene28399:CDS | 35.0% |
| !! | TACAATATGAAAGTGTCTCC+AGG | + | chr4.4:9073216-9073235 | MS.gene28399:CDS | 35.0% |
| !!! | CTTGTAGAGATTTTGCTGTT+GGG | + | chr4.4:9074185-9074204 | MS.gene28399:CDS | 35.0% |
| !!! | GGAATTTCCACTGCATTTTT+TGG | - | chr4.4:9075810-9075829 | None:intergenic | 35.0% |
| AAAACCATCTCATGTGCAAG+TGG | + | chr4.4:9075187-9075206 | MS.gene28399:intron | 40.0% | |
| AAACAAACAGGCCTTACTCT+CGG | - | chr4.4:9072805-9072824 | None:intergenic | 40.0% | |
| AAACCATCTCATGTGCAAGT+GGG | + | chr4.4:9075188-9075207 | MS.gene28399:intron | 40.0% | |
| AAACTTATACAGGTCAGTGG+TGG | + | chr4.4:9076224-9076243 | MS.gene28399:CDS | 40.0% | |
| AAGAAAACAAAGGACGCGAA+GGG | + | chr4.4:9075993-9076012 | MS.gene28399:CDS | 40.0% | |
| AAGTAACTGGTACAGTACAG+CGG | + | chr4.4:9076135-9076154 | MS.gene28399:CDS | 40.0% | |
| ACCATAAGCAATTGCAGTCT+GGG | + | chr4.4:9073013-9073032 | MS.gene28399:intron | 40.0% | |
| ACCCAGATAGACACAATACA+CGG | - | chr4.4:9073845-9073864 | None:intergenic | 40.0% | |
| ACCCTGATGTTGGAAACTAA+TGG | + | chr4.4:9073332-9073351 | MS.gene28399:intron | 40.0% | |
| AGAATAATCCCCACTCTCAT+GGG | - | chr4.4:9074317-9074336 | None:intergenic | 40.0% | |
| AGCAAAGTTATGAGGATAGC+AGG | + | chr4.4:9074251-9074270 | MS.gene28399:CDS | 40.0% | |
| AGGCTAAGAGATGATAGATG+TGG | + | chr4.4:9074727-9074746 | MS.gene28399:CDS | 40.0% | |
| ATAACTGCTTCCCATTTGGT+TGG | + | chr4.4:9075330-9075349 | MS.gene28399:CDS | 40.0% | |
| ATAAGAAGGAAGCCAACTGT+AGG | + | chr4.4:9074965-9074984 | MS.gene28399:CDS | 40.0% | |
| ATACTAGGAGAAAAGGTTGG+AGG | - | chr4.4:9075780-9075799 | None:intergenic | 40.0% | |
| ATAGCAGGGAAAGTAAACAC+AGG | + | chr4.4:9074266-9074285 | MS.gene28399:CDS | 40.0% | |
| ATGAACAGATGTCTCCTGAT+TGG | + | chr4.4:9075055-9075074 | MS.gene28399:CDS | 40.0% | |
| ATTCCGTATCTTCAACTGCA+AGG | + | chr4.4:9073946-9073965 | MS.gene28399:intron | 40.0% | |
| ATTCTAATCCCCATGAGAGT+GGG | + | chr4.4:9074305-9074324 | MS.gene28399:CDS | 40.0% | |
| ATTCTCATTTCCCAGTCAGT+AGG | + | chr4.4:9075012-9075031 | MS.gene28399:CDS | 40.0% | |
| CAGATGAATCATCTAGGGAA+AGG | + | chr4.4:9074455-9074474 | MS.gene28399:CDS | 40.0% | |
| CATAGAGCAATCATTCAAGC+AGG | + | chr4.4:9074495-9074514 | MS.gene28399:CDS | 40.0% | |
| CATTTACCAGCCCTAGATTA+AGG | + | chr4.4:9074623-9074642 | MS.gene28399:CDS | 40.0% | |
| CCAACAGCAAAATCTCTACA+AGG | - | chr4.4:9074187-9074206 | None:intergenic | 40.0% | |
| CCACCACTATTATCTAACCT+AGG | + | chr4.4:9075828-9075847 | MS.gene28399:CDS | 40.0% | |
| CCAGGAGCAAGAATTATTGA+AGG | + | chr4.4:9075384-9075403 | MS.gene28399:CDS | 40.0% | |
| CCTAGGTTAGATAATAGTGG+TGG | - | chr4.4:9075831-9075850 | None:intergenic | 40.0% | |
| CCTTCAATAATTCTTGCTCC+TGG | - | chr4.4:9075387-9075406 | None:intergenic | 40.0% | |
| CTACCTTGCAGTTGAAGATA+CGG | - | chr4.4:9073952-9073971 | None:intergenic | 40.0% | |
| CTCAACCAAATTTACTGTGC+CGG | - | chr4.4:9074824-9074843 | None:intergenic | 40.0% | |
| CTCATGGGGATTAGAATATC+TGG | - | chr4.4:9074302-9074321 | None:intergenic | 40.0% | |
| CTCTTCGGAAGCAAAATTGA+AGG | + | chr4.4:9075639-9075658 | MS.gene28399:CDS | 40.0% | |
| CTGAAACCAACATGGAAAGA+TGG | + | chr4.4:9076062-9076081 | MS.gene28399:CDS | 40.0% | |
| CTGAGCTCAATAAGCTTAAC+CGG | + | chr4.4:9073583-9073602 | MS.gene28399:intron | 40.0% | |
| CTTGACTTTGTCCAACCAAA+TGG | - | chr4.4:9075344-9075363 | None:intergenic | 40.0% | |
| GACCTATCATCCCTTAATCT+AGG | - | chr4.4:9074637-9074656 | None:intergenic | 40.0% | |
| GAGTAATCAAGGTGAAGATC+AGG | + | chr4.4:9074660-9074679 | MS.gene28399:CDS | 40.0% | |
| GATGATAGATGTGGTTCAGA+TGG | + | chr4.4:9074736-9074755 | MS.gene28399:CDS | 40.0% | |
| GCAAAGTTATGAGGATAGCA+GGG | + | chr4.4:9074252-9074271 | MS.gene28399:CDS | 40.0% | |
| GCAACTAAATCAGTCTGCAT+TGG | - | chr4.4:9074796-9074815 | None:intergenic | 40.0% | |
| GCAATTGCTTATGGTGCATA+TGG | - | chr4.4:9073008-9073027 | None:intergenic | 40.0% | |
| GCAGAAAGCTATCTTCAAAC+TGG | + | chr4.4:9072751-9072770 | MS.gene28399:CDS | 40.0% | |
| GGCCGATGTAGATAAAGTTT+GGG | + | chr4.4:9074765-9074784 | MS.gene28399:CDS | 40.0% | |
| GGGAAAGGGAAATTGATAGA+AGG | + | chr4.4:9074470-9074489 | MS.gene28399:CDS | 40.0% | |
| GGTTTGAGGAATGGAACAAT+AGG | + | chr4.4:9073238-9073257 | MS.gene28399:CDS | 40.0% | |
| GTGCATCATGACAATTCTGA+TGG | + | chr4.4:9074415-9074434 | MS.gene28399:CDS | 40.0% | |
| GTTATTCAGCTGTCGATGAT+AGG | + | chr4.4:9074131-9074150 | MS.gene28399:CDS | 40.0% | |
| TACTAGGAGAAAAGGTTGGA+GGG | - | chr4.4:9075779-9075798 | None:intergenic | 40.0% | |
| TAGTCCTTGTCCTGTCAAAA+GGG | - | chr4.4:9075292-9075311 | None:intergenic | 40.0% | |
| TATTCTAATCCCCATGAGAG+TGG | + | chr4.4:9074304-9074323 | MS.gene28399:CDS | 40.0% | |
| TCAATAATTCTTGCTCCTGG+GGG | - | chr4.4:9075384-9075403 | None:intergenic | 40.0% | |
| TCGCAGAAACACAAACAAAC+AGG | - | chr4.4:9072817-9072836 | None:intergenic | 40.0% | |
| TGATGAGGCCAAGAAAACAA+AGG | + | chr4.4:9075983-9076002 | MS.gene28399:CDS | 40.0% | |
| TGGCCGATGTAGATAAAGTT+TGG | + | chr4.4:9074764-9074783 | MS.gene28399:CDS | 40.0% | |
| TTAGAATATCTGGGTCCATC+TGG | - | chr4.4:9074292-9074311 | None:intergenic | 40.0% | |
| TTAGTCCTTGTCCTGTCAAA+AGG | - | chr4.4:9075293-9075312 | None:intergenic | 40.0% | |
| TTAGTTTCCAACATCAGGGT+CGG | - | chr4.4:9073332-9073351 | None:intergenic | 40.0% | |
| TTCAATCCAATAGCAGGATC+TGG | - | chr4.4:9075699-9075718 | None:intergenic | 40.0% | |
| TTCGGCAGATGAATCATCTA+GGG | + | chr4.4:9074450-9074469 | MS.gene28399:CDS | 40.0% | |
| TTCTGTTCCTGTCTAAGCTA+TGG | - | chr4.4:9074918-9074937 | None:intergenic | 40.0% | |
| TTGCGTGAAAACCTCATTCT+TGG | - | chr4.4:9073105-9073124 | None:intergenic | 40.0% | |
| TTTCGGCAGATGAATCATCT+AGG | + | chr4.4:9074449-9074468 | MS.gene28399:CDS | 40.0% | |
| ! | AAGAATGAGGTTTTCACGCA+AGG | + | chr4.4:9073104-9073123 | MS.gene28399:CDS | 40.0% |
| ! | ACTGATTTAGTTGCTGTCTC+CGG | + | chr4.4:9074802-9074821 | MS.gene28399:CDS | 40.0% |
| ! | GCTTTTCTTTGGATATTGCC+AGG | + | chr4.4:9074068-9074087 | MS.gene28399:intron | 40.0% |
| ! | TCAATTTTCTCTCGTGTCTG+AGG | - | chr4.4:9076170-9076189 | None:intergenic | 40.0% |
| ! | TCATCTCTTAGCCTTCCATT+AGG | - | chr4.4:9074721-9074740 | None:intergenic | 40.0% |
| ! | TGATGTGGTTTGGATAATGC+TGG | - | chr4.4:9074525-9074544 | None:intergenic | 40.0% |
| !! | AGGAGATTCTGAAACCAACA+TGG | + | chr4.4:9076054-9076073 | MS.gene28399:CDS | 40.0% |
| !! | ATCTTTGAGATGTCTGTGTG+TGG | + | chr4.4:9074011-9074030 | MS.gene28399:intron | 40.0% |
| !! | CCTTGTAGAGATTTTGCTGT+TGG | + | chr4.4:9074184-9074203 | MS.gene28399:CDS | 40.0% |
| !! | TTTGTTTTCTTGGCCTCATC+AGG | - | chr4.4:9075984-9076003 | None:intergenic | 40.0% |
| AACAAACAGGCCTTACTCTC+GGG | - | chr4.4:9072804-9072823 | None:intergenic | 45.0% | |
| AAGCCATGAATCCAGGTTCT+GGG | - | chr4.4:9074873-9074892 | None:intergenic | 45.0% | |
| ACCCAGACTGCAATTGCTTA+TGG | - | chr4.4:9073017-9073036 | None:intergenic | 45.0% | |
| AGAAAACAAAGGACGCGAAG+GGG | + | chr4.4:9075994-9076013 | MS.gene28399:CDS | 45.0% | |
| AGAGTAGCCTTTGCATCACA+GGG | - | chr4.4:9075621-9075640 | None:intergenic | 45.0% | |
| AGGGTCGGTGCAGATATTAA+TGG | - | chr4.4:9073317-9073336 | None:intergenic | 45.0% | |
| AGTAACTGGTACAGTACAGC+GGG | + | chr4.4:9076136-9076155 | MS.gene28399:CDS | 45.0% | |
| ATCAAGCCAGATCCTGCTAT+TGG | + | chr4.4:9075690-9075709 | MS.gene28399:CDS | 45.0% | |
| ATCCAGTTGCTCCTAATGGA+AGG | + | chr4.4:9074707-9074726 | MS.gene28399:CDS | 45.0% | |
| ATGTGCAAGTGGGAAAACAG+AGG | + | chr4.4:9075198-9075217 | MS.gene28399:intron | 45.0% | |
| ATGTGGTTCAGATGGCAGAA+TGG | + | chr4.4:9074744-9074763 | MS.gene28399:CDS | 45.0% | |
| CAAGAAAACAAAGGACGCGA+AGG | + | chr4.4:9075992-9076011 | MS.gene28399:CDS | 45.0% | |
| CACCATAAGCAATTGCAGTC+TGG | + | chr4.4:9073012-9073031 | MS.gene28399:intron | 45.0% | |
| CCCAGATAGACACAATACAC+GGG | - | chr4.4:9073844-9073863 | None:intergenic | 45.0% | |
| CCCGTGTATTGTGTCTATCT+GGG | + | chr4.4:9073841-9073860 | MS.gene28399:intron | 45.0% | |
| CGATGATAGGAACAGAACGA+GGG | + | chr4.4:9074144-9074163 | MS.gene28399:CDS | 45.0% | |
| CGGCACAGTAAATTTGGTTG+AGG | + | chr4.4:9074822-9074841 | MS.gene28399:CDS | 45.0% | |
| CTCGCACCATAATTCCAATC+AGG | - | chr4.4:9075072-9075091 | None:intergenic | 45.0% | |
| CTTTGGATATTGCCAGGTCT+AGG | + | chr4.4:9074074-9074093 | MS.gene28399:intron | 45.0% | |
| GAAAGTAAACACAGGCCAGA+TGG | + | chr4.4:9074274-9074293 | MS.gene28399:CDS | 45.0% | |
| GAATAATCCCCACTCTCATG+GGG | - | chr4.4:9074316-9074335 | None:intergenic | 45.0% | |
| GAATAGTCCTATGGGAGACA+TGG | + | chr4.4:9075944-9075963 | MS.gene28399:CDS | 45.0% | |
| GAGAATAATCCCCACTCTCA+TGG | - | chr4.4:9074318-9074337 | None:intergenic | 45.0% | |
| GATAGGTCGAGGAGTAATCA+AGG | + | chr4.4:9074649-9074668 | MS.gene28399:CDS | 45.0% | |
| GATGCAAAGGCTACTCTCTT+CGG | + | chr4.4:9075624-9075643 | MS.gene28399:CDS | 45.0% | |
| GATTAAGGGATGATAGGTCG+AGG | + | chr4.4:9074638-9074657 | MS.gene28399:CDS | 45.0% | |
| GCCCTAGATTAAGGGATGAT+AGG | + | chr4.4:9074632-9074651 | MS.gene28399:CDS | 45.0% | |
| GCTATAGGACGTTGCATTGA+TGG | - | chr4.4:9073726-9073745 | None:intergenic | 45.0% | |
| GGACATACTCCAACTCAGAA+CGG | + | chr4.4:9075492-9075511 | MS.gene28399:CDS | 45.0% | |
| GGAGACATGGACCAAAATGA+TGG | + | chr4.4:9075957-9075976 | MS.gene28399:CDS | 45.0% | |
| GGCTCCATACTGTCAAACAT+TGG | - | chr4.4:9075732-9075751 | None:intergenic | 45.0% | |
| GGGAGTCAGAGGTTCAAATA+AGG | + | chr4.4:9073137-9073156 | MS.gene28399:CDS | 45.0% | |
| GGGTCGGTGCAGATATTAAT+GGG | - | chr4.4:9073316-9073335 | None:intergenic | 45.0% | |
| TCAAGGTGAAGATCAGGTGT+TGG | + | chr4.4:9074666-9074685 | MS.gene28399:CDS | 45.0% | |
| TCCCGTGTATTGTGTCTATC+TGG | + | chr4.4:9073840-9073859 | MS.gene28399:intron | 45.0% | |
| TCGATGATAGGAACAGAACG+AGG | + | chr4.4:9074143-9074162 | MS.gene28399:CDS | 45.0% | |
| TGAATTTCCACCCGAGAGTA+AGG | + | chr4.4:9072791-9072810 | MS.gene28399:intron | 45.0% | |
| TGTCTCCGGCACAGTAAATT+TGG | + | chr4.4:9074816-9074835 | MS.gene28399:CDS | 45.0% | |
| TTACTCTCGGGTGGAAATTC+AGG | - | chr4.4:9072792-9072811 | None:intergenic | 45.0% | |
| TTCTAATCCCCATGAGAGTG+GGG | + | chr4.4:9074306-9074325 | MS.gene28399:CDS | 45.0% | |
| TTGGCCAATGAACGATGGAT+CGG | + | chr4.4:9074891-9074910 | MS.gene28399:CDS | 45.0% | |
| TTGTTCCATTCCTCAAACCC+TGG | - | chr4.4:9073237-9073256 | None:intergenic | 45.0% | |
| TTTCCCACTTGCACATGAGA+TGG | - | chr4.4:9075194-9075213 | None:intergenic | 45.0% | |
| ! | AGCCTATCACAAATCGGTTC+TGG | + | chr4.4:9075471-9075490 | MS.gene28399:CDS | 45.0% |
| ! | ATCATCCCTTAATCTAGGGC+TGG | - | chr4.4:9074632-9074651 | None:intergenic | 45.0% |
| ! | ATTTTCTGCCGTCCTACAGT+TGG | - | chr4.4:9074980-9074999 | None:intergenic | 45.0% |
| ! | CCTCATCAGGTCCATCATTT+TGG | - | chr4.4:9075971-9075990 | None:intergenic | 45.0% |
| ! | CGACGAAGACTACCAAGTTT+TGG | + | chr4.4:9073161-9073180 | MS.gene28399:CDS | 45.0% |
| ! | GCAAAGGGAAGGTGTAGAAT+GGG | + | chr4.4:9074376-9074395 | MS.gene28399:CDS | 45.0% |
| ! | GCAACTGGATCGCTCAATTT+TGG | - | chr4.4:9074697-9074716 | None:intergenic | 45.0% |
| ! | GGAGTGTTACTGATGTGGTT+TGG | - | chr4.4:9074535-9074554 | None:intergenic | 45.0% |
| ! | TCTAAAGCCCTGTGATGCAA+AGG | + | chr4.4:9075611-9075630 | MS.gene28399:CDS | 45.0% |
| ! | TCTACCCTTTTGACAGGACA+AGG | + | chr4.4:9075285-9075304 | MS.gene28399:intron | 45.0% |
| ! | TGCAAAGGGAAGGTGTAGAA+TGG | + | chr4.4:9074375-9074394 | MS.gene28399:CDS | 45.0% |
| ! | TTCACGCAAGGAGCCTTTTT+CGG | + | chr4.4:9073116-9073135 | MS.gene28399:CDS | 45.0% |
| ! | TTTTGGTCCATGTCTCCCAT+AGG | - | chr4.4:9075954-9075973 | None:intergenic | 45.0% |
| !! | CCAAAATGATGGACCTGATG+AGG | + | chr4.4:9075968-9075987 | MS.gene28399:CDS | 45.0% |
| !! | GCTTTTGGGAATTGTCGGAA+TGG | + | chr4.4:9074568-9074587 | MS.gene28399:CDS | 45.0% |
| !! | GTCCAGAACCGATTTGTGAT+AGG | - | chr4.4:9075476-9075495 | None:intergenic | 45.0% |
| !! | TGCAAGGAGTGTTACTGATG+TGG | - | chr4.4:9074540-9074559 | None:intergenic | 45.0% |
| !!! | CTTCGCGTCCTTTGTTTTCT+TGG | - | chr4.4:9075994-9076013 | None:intergenic | 45.0% |
| ACTCCTACTTCTCCTAGACC+TGG | - | chr4.4:9074089-9074108 | None:intergenic | 50.0% | |
| AGACACAATACACGGGAGTG+TGG | - | chr4.4:9073837-9073856 | None:intergenic | 50.0% | |
| AGCCATGAATCCAGGTTCTG+GGG | - | chr4.4:9074872-9074891 | None:intergenic | 50.0% | |
| AGCCTTCCATTAGGAGCAAC+TGG | - | chr4.4:9074712-9074731 | None:intergenic | 50.0% | |
| AGCGATCCAGTTGCTCCTAA+TGG | + | chr4.4:9074703-9074722 | MS.gene28399:CDS | 50.0% | |
| AGTAAGCAGCAAGTTGCTCC+AGG | + | chr4.4:9075126-9075145 | MS.gene28399:CDS | 50.0% | |
| ATTGGCCAAGCCATGAATCC+AGG | - | chr4.4:9074880-9074899 | None:intergenic | 50.0% | |
| ATTTCCCAGTCAGTAGGTGG+AGG | + | chr4.4:9075018-9075037 | MS.gene28399:CDS | 50.0% | |
| CAAGCCATGAATCCAGGTTC+TGG | - | chr4.4:9074874-9074893 | None:intergenic | 50.0% | |
| CAGAACCTGGATTCATGGCT+TGG | + | chr4.4:9074872-9074891 | MS.gene28399:CDS | 50.0% | |
| CAGTCTGGGTGTTCCTTTAC+AGG | + | chr4.4:9073027-9073046 | MS.gene28399:intron | 50.0% | |
| CTCATTTCCCAGTCAGTAGG+TGG | + | chr4.4:9075015-9075034 | MS.gene28399:CDS | 50.0% | |
| GAACCTCTGACTCCCGAAAA+AGG | - | chr4.4:9073132-9073151 | None:intergenic | 50.0% | |
| GAAGGAAGCCAACTGTAGGA+CGG | + | chr4.4:9074969-9074988 | MS.gene28399:CDS | 50.0% | |
| GAGAGTAGCCTTTGCATCAC+AGG | - | chr4.4:9075622-9075641 | None:intergenic | 50.0% | |
| GATAGGAACAGAACGAGGGA+TGG | + | chr4.4:9074148-9074167 | MS.gene28399:CDS | 50.0% | |
| GGAGACATCTGTTCATCACC+AGG | - | chr4.4:9075051-9075070 | None:intergenic | 50.0% | |
| GGTCTAGGAGAAGTAGGAGT+CGG | + | chr4.4:9074089-9074108 | MS.gene28399:intron | 50.0% | |
| TGGCCAATGAACGATGGATC+GGG | + | chr4.4:9074892-9074911 | MS.gene28399:CDS | 50.0% | |
| TGTCTCCAGGGTTTGAGGAA+TGG | + | chr4.4:9073229-9073248 | MS.gene28399:CDS | 50.0% | |
| TTGCCAGGTCTAGGAGAAGT+AGG | + | chr4.4:9074083-9074102 | MS.gene28399:intron | 50.0% | |
| ! | ATGGCTTGGCCAATGAACGA+TGG | + | chr4.4:9074886-9074905 | MS.gene28399:CDS | 50.0% |
| ! | TCACGCAAGGAGCCTTTTTC+GGG | + | chr4.4:9073117-9073136 | MS.gene28399:CDS | 50.0% |
| !! | GAAAGTGTCTCCAGGGTTTG+AGG | + | chr4.4:9073224-9073243 | MS.gene28399:CDS | 50.0% |
| !! | TTGCTGACTCCGTTCTGAGT+TGG | - | chr4.4:9075504-9075523 | None:intergenic | 50.0% |
| AAACAGGCCTTACTCTCGGG+TGG | - | chr4.4:9072801-9072820 | None:intergenic | 55.0% | |
| ACAGCTTCCATTGTTCCCCC+AGG | + | chr4.4:9075366-9075385 | MS.gene28399:CDS | 55.0% | |
| ACATGCCTCCACCTACTGAC+TGG | - | chr4.4:9075026-9075045 | None:intergenic | 55.0% | |
| CTCGCACATATCCTCGGAAC+TGG | + | chr4.4:9075561-9075580 | MS.gene28399:CDS | 55.0% | |
| GATCGGGCCATAGCTTAGAC+AGG | + | chr4.4:9074908-9074927 | MS.gene28399:CDS | 55.0% | |
| GCCTCTCTCGCACATATCCT+CGG | + | chr4.4:9075555-9075574 | MS.gene28399:CDS | 55.0% | |
| GCTGTTGGGAACTGCAGAAG+AGG | + | chr4.4:9074199-9074218 | MS.gene28399:CDS | 55.0% | |
| TATGTGCGAGAGAGGCTGAG+AGG | - | chr4.4:9075551-9075570 | None:intergenic | 55.0% | |
| TCCGAGGATATGTGCGAGAG+AGG | - | chr4.4:9075559-9075578 | None:intergenic | 55.0% | |
| TCTTGCTCCTGGGGGAACAA+TGG | - | chr4.4:9075376-9075395 | None:intergenic | 55.0% | |
| TGGCCCGATCCATCGTTCAT+TGG | - | chr4.4:9074898-9074917 | None:intergenic | 55.0% | |
| ! | AGTCAGTAGGTGGAGGCATG+TGG | + | chr4.4:9075025-9075044 | MS.gene28399:CDS | 55.0% |
| ! | ATCTGCACCGACCCTGATGT+TGG | + | chr4.4:9073322-9073341 | MS.gene28399:intron | 55.0% |
| ! | CATGCCTCCACCTACTGACT+GGG | - | chr4.4:9075025-9075044 | None:intergenic | 55.0% |
| !!! | GAGCCTTTTTCGGGAGTCAG+AGG | + | chr4.4:9073126-9073145 | MS.gene28399:CDS | 55.0% |
| ATCATAGGCGCCCCAGAACC+TGG | + | chr4.4:9074859-9074878 | MS.gene28399:CDS | 60.0% | |
| CGCCCCAGAACCTGGATTCA+TGG | + | chr4.4:9074867-9074886 | MS.gene28399:CDS | 60.0% | |
| AGGAGTCGGAGCCCTCCACA+TGG | + | chr4.4:9074103-9074122 | MS.gene28399:CDS | 65.0% | |
| GGAGCTGCTGACCAGTTCCG+AGG | - | chr4.4:9075575-9075594 | None:intergenic | 65.0% | |
| ! | GTAGGTGGAGGCATGTGGCC+TGG | + | chr4.4:9075030-9075049 | MS.gene28399:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 9072738 | 9076304 | 9072738 | ID=MS.gene28399 |
| chr4.4 | mRNA | 9072738 | 9076304 | 9072738 | ID=MS.gene28399.t1;Parent=MS.gene28399 |
| chr4.4 | exon | 9072738 | 9072807 | 9072738 | ID=MS.gene28399.t1.exon1;Parent=MS.gene28399.t1 |
| chr4.4 | CDS | 9072738 | 9072807 | 9072738 | ID=cds.MS.gene28399.t1;Parent=MS.gene28399.t1 |
| chr4.4 | exon | 9073049 | 9073295 | 9073049 | ID=MS.gene28399.t1.exon2;Parent=MS.gene28399.t1 |
| chr4.4 | CDS | 9073049 | 9073295 | 9073049 | ID=cds.MS.gene28399.t1;Parent=MS.gene28399.t1 |
| chr4.4 | exon | 9074090 | 9075147 | 9074090 | ID=MS.gene28399.t1.exon3;Parent=MS.gene28399.t1 |
| chr4.4 | CDS | 9074090 | 9075147 | 9074090 | ID=cds.MS.gene28399.t1;Parent=MS.gene28399.t1 |
| chr4.4 | exon | 9075301 | 9076304 | 9075301 | ID=MS.gene28399.t1.exon4;Parent=MS.gene28399.t1 |
| chr4.4 | CDS | 9075301 | 9076304 | 9075301 | ID=cds.MS.gene28399.t1;Parent=MS.gene28399.t1 |
| Gene Sequence |
| Protein sequence |
