Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28539.t1 | RHN42406.1 | 87.5 | 368 | 33 | 2 | 17 | 377 | 5 | 366 | 1.10E-189 | 672.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28539.t1 | Q9FI94 | 81.9 | 364 | 52 | 3 | 19 | 374 | 2 | 359 | 1.0e-175 | 617.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28539.t1 | A0A396GMQ6 | 87.5 | 368 | 33 | 2 | 17 | 377 | 5 | 366 | 8.0e-190 | 672.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050680 | MS.gene28539 | 0.800355 | 1.50E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28539.t1 | MTR_8g079080 | 82.609 | 46 | 8 | 0 | 235 | 280 | 45 | 90 | 4.86e-20 | 84.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28539.t1 | AT5G05920 | 81.868 | 364 | 52 | 3 | 19 | 374 | 2 | 359 | 0.0 | 625 |
MS.gene28539.t1 | AT5G05920 | 86.777 | 242 | 26 | 1 | 133 | 374 | 6 | 241 | 5.16e-159 | 446 |
MS.gene28539.t1 | AT5G05920 | 85.311 | 177 | 20 | 1 | 198 | 374 | 1 | 171 | 1.01e-109 | 319 |
Find 87 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCGATTTGAAGACACTTTC+CGG | 0.186586 | 8.4:-27699921 | None:intergenic |
ACTTCTAATCTTATCTCTTC+TGG | 0.201893 | 8.4:+27700248 | MS.gene28539:CDS |
GAATTTGATGGAAGTGATTC+TGG | 0.236275 | 8.4:+27702936 | MS.gene28539:CDS |
GAATCGAATCGGTAATTTAT+TGG | 0.240496 | 8.4:+27700688 | MS.gene28539:CDS |
GGCTACGTGTAAAGTGTTTC+TGG | 0.243992 | 8.4:+27700220 | MS.gene28539:CDS |
ATTTGCAATAATTGTCATTA+GGG | 0.270000 | 8.4:-27700712 | None:intergenic |
TTGGCAATGCAACAGATATA+AGG | 0.280747 | 8.4:+27702769 | MS.gene28539:intron |
AATTTGCAATAATTGTCATT+AGG | 0.309498 | 8.4:-27700713 | None:intergenic |
ATGAAAGCTCCTACCTTTAC+TGG | 0.310474 | 8.4:+27702303 | MS.gene28539:CDS |
ATGGGTTGAATTAGCTTGAT+TGG | 0.321932 | 8.4:+27700150 | MS.gene28539:intron |
ATCCAAGTTAATAGCTCGTT+TGG | 0.325038 | 8.4:+27702265 | MS.gene28539:CDS |
GTTAATCCTGGACAATAAAC+TGG | 0.349470 | 8.4:-27702582 | None:intergenic |
CATTTGATTAACAACTTGAA+TGG | 0.354309 | 8.4:-27700032 | None:intergenic |
ACACTTTCCGGCGAGGCTTT+CGG | 0.357612 | 8.4:-27699909 | None:intergenic |
AATACTGCACAAGAATTTGA+TGG | 0.361085 | 8.4:+27702924 | MS.gene28539:CDS |
TGCCTTGCACCAACGTATAA+AGG | 0.362855 | 8.4:+27700623 | MS.gene28539:CDS |
TGACAATTATTGCAAATTCC+AGG | 0.364738 | 8.4:+27700718 | MS.gene28539:CDS |
ATGTACAGCTTCACCATTCA+TGG | 0.365986 | 8.4:-27702793 | None:intergenic |
ATAATCATGCCTGTCTTCAT+AGG | 0.379415 | 8.4:-27702822 | None:intergenic |
CCCCATGAAACAGCCTCATC+TGG | 0.392601 | 8.4:-27702966 | None:intergenic |
AGGATTAACCGATGGCTCAT+TGG | 0.403351 | 8.4:+27702596 | MS.gene28539:CDS |
CATGTTATTGTTACAACTAC+AGG | 0.408408 | 8.4:+27700575 | MS.gene28539:CDS |
GCTACGTGTAAAGTGTTTCT+GGG | 0.412284 | 8.4:+27700221 | MS.gene28539:CDS |
AAAGGAGATTTCTCTTTGCC+TGG | 0.416263 | 8.4:+27700641 | MS.gene28539:CDS |
ATCCAGATGAGGCTGTTTCA+TGG | 0.429972 | 8.4:+27702964 | MS.gene28539:CDS |
TGGCAATGCAACAGATATAA+GGG | 0.431616 | 8.4:+27702770 | MS.gene28539:intron |
CTCAAATCCATGCTCACTAC+TGG | 0.433323 | 8.4:+27699983 | MS.gene28539:CDS |
CATTCAAGTTGTTAATCAAA+TGG | 0.437638 | 8.4:+27700033 | MS.gene28539:CDS |
TCACTACAATCGTCAGTAAT+GGG | 0.439639 | 8.4:-27700188 | None:intergenic |
GGATTAACCGATGGCTCATT+GGG | 0.439770 | 8.4:+27702597 | MS.gene28539:CDS |
CGATTGTAGTGATCGGAAAT+CGG | 0.442152 | 8.4:+27700199 | MS.gene28539:CDS |
AATATTCCAGTTTATTGTCC+AGG | 0.444941 | 8.4:+27702576 | MS.gene28539:CDS |
CTACCTTTACTGGGCATACA+AGG | 0.457425 | 8.4:+27702313 | MS.gene28539:CDS |
TTGAATGGCTTCACCGAGGT+TGG | 0.457978 | 8.4:-27700017 | None:intergenic |
TCCAGATGAGGCTGTTTCAT+GGG | 0.464019 | 8.4:+27702965 | MS.gene28539:CDS |
TCCAAGTTAATAGCTCGTTT+GGG | 0.467798 | 8.4:+27702266 | MS.gene28539:CDS |
ACATTAAGACCACAGTTGTC+AGG | 0.478002 | 8.4:-27702660 | None:intergenic |
GCGTTGCAAATGTGATGTTT+CGG | 0.480473 | 8.4:-27702861 | None:intergenic |
ATTATTGCAAATTCCAGGAC+TGG | 0.481570 | 8.4:+27700723 | MS.gene28539:CDS |
GGAGCTTATCTTCGCTCAAA+AGG | 0.483770 | 8.4:+27700662 | MS.gene28539:CDS |
ATCACTACAATCGTCAGTAA+TGG | 0.493546 | 8.4:-27700189 | None:intergenic |
TCCCAAACGAGCTATTAACT+TGG | 0.493827 | 8.4:-27702267 | None:intergenic |
CTTCCTTTGTCAGCATCACA+TGG | 0.513831 | 8.4:+27700289 | MS.gene28539:CDS |
TTGCCTTGTATGCCCAGTAA+AGG | 0.514374 | 8.4:-27702316 | None:intergenic |
AATGAGCCATCGGTTAATCC+TGG | 0.515125 | 8.4:-27702594 | None:intergenic |
AGGATCTGCGAAAACTGTTA+AGG | 0.517573 | 8.4:+27702998 | MS.gene28539:CDS |
AACGATAGCATTCCCACTGC+TGG | 0.520093 | 8.4:+27703137 | MS.gene28539:CDS |
CTCCTTTATACGTTGGTGCA+AGG | 0.531084 | 8.4:-27700625 | None:intergenic |
TCAAAAGGATTGAATCGAAT+CGG | 0.532537 | 8.4:+27700677 | MS.gene28539:CDS |
AAATAGGAATAATCCAGTCC+TGG | 0.541617 | 8.4:-27700736 | None:intergenic |
GCGAACCTTTATCAATGAAG+AGG | 0.556685 | 8.4:-27703189 | None:intergenic |
CATGCAGATCCTATGAAGAC+AGG | 0.558786 | 8.4:+27702813 | MS.gene28539:CDS |
TGCAAATGTGATGTTTCGGA+AGG | 0.562235 | 8.4:-27702857 | None:intergenic |
TTTGAGCGAAGATAAGCTCC+AGG | 0.562914 | 8.4:-27700659 | None:intergenic |
GAGAAATCTCCTTTATACGT+TGG | 0.568029 | 8.4:-27700632 | None:intergenic |
TTTCATTCCTTCCACAACAC+TGG | 0.571917 | 8.4:+27702633 | MS.gene28539:CDS |
AAACGAGCTATTAACTTGGA+TGG | 0.573229 | 8.4:-27702263 | None:intergenic |
ACAGATATAAGGGCCATGAA+TGG | 0.578881 | 8.4:+27702780 | MS.gene28539:intron |
CCAGATGAGGCTGTTTCATG+GGG | 0.578985 | 8.4:+27702966 | MS.gene28539:CDS |
CTTGTATGCCCAGTAAAGGT+AGG | 0.581698 | 8.4:-27702312 | None:intergenic |
AATGTTTCAGCAACCAGCAG+TGG | 0.585353 | 8.4:-27703150 | None:intergenic |
GGTTGAATTAGCTTGATTGG+AGG | 0.590957 | 8.4:+27700153 | MS.gene28539:intron |
TATTGTCCAGGATTAACCGA+TGG | 0.595026 | 8.4:+27702588 | MS.gene28539:CDS |
TGACAACTGTGGTCTTAATG+TGG | 0.596295 | 8.4:+27702662 | MS.gene28539:CDS |
ACAGTCGACAAAAGCAGAGT+CGG | 0.598115 | 8.4:-27699822 | None:intergenic |
TGTCAGGACTGCCAGTGTTG+TGG | 0.598178 | 8.4:-27702644 | None:intergenic |
CGGAAAGTGTCTTCAAATCG+AGG | 0.609261 | 8.4:+27699922 | MS.gene28539:CDS |
CTTAATGTGGACATAGTGCA+AGG | 0.610797 | 8.4:+27702675 | MS.gene28539:CDS |
TGAAAGCTCCTACCTTTACT+GGG | 0.613009 | 8.4:+27702304 | MS.gene28539:CDS |
TTCTGGAGCTCATCCAGATG+AGG | 0.617682 | 8.4:+27702953 | MS.gene28539:CDS |
AACGCCAACATGATGCGTAA+TGG | 0.620030 | 8.4:+27702879 | MS.gene28539:CDS |
CATGTCACCCAATGAGCCAT+CGG | 0.626979 | 8.4:-27702604 | None:intergenic |
ATGTTTCAGCAACCAGCAGT+GGG | 0.629148 | 8.4:-27703149 | None:intergenic |
TTGAAAACCAGTAGTGAGCA+TGG | 0.634888 | 8.4:-27699990 | None:intergenic |
TGCACCATTACGCATCATGT+TGG | 0.635711 | 8.4:-27702883 | None:intergenic |
TTACTGACGATTGTAGTGAT+CGG | 0.636960 | 8.4:+27700192 | MS.gene28539:CDS |
GGAAAGTGTCTTCAAATCGA+GGG | 0.644614 | 8.4:+27699923 | MS.gene28539:CDS |
GTTGAAGGAACAAACTCATG+AGG | 0.655135 | 8.4:+27700769 | MS.gene28539:CDS |
TTTGAAGACACTTTCCGGCG+AGG | 0.658661 | 8.4:-27699916 | None:intergenic |
AGGACTGCCAGTGTTGTGGA+AGG | 0.670043 | 8.4:-27702640 | None:intergenic |
TCACCATGTGATGCTGACAA+AGG | 0.671310 | 8.4:-27700292 | None:intergenic |
GAGGGTTATGATTTCAACCG+CGG | 0.671769 | 8.4:+27699941 | MS.gene28539:CDS |
GTTATTGTTACAACTACAGG+TGG | 0.672134 | 8.4:+27700578 | MS.gene28539:CDS |
ACTGGCAGTCCTGACAACTG+TGG | 0.708762 | 8.4:+27702651 | MS.gene28539:CDS |
GCTGTTGATAATCGACGCCG+CGG | 0.724424 | 8.4:-27699958 | None:intergenic |
CAACTTGAATGGCTTCACCG+AGG | 0.725512 | 8.4:-27700021 | None:intergenic |
CAGATGAGGCTGTTTCATGG+GGG | 0.740121 | 8.4:+27702967 | MS.gene28539:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTAAAAATTATAATTTT+GGG | + | chr8.4:27701740-27701759 | MS.gene28539:intron | 0.0% |
!! | TATTATAAATTAACATTTCA+AGG | - | chr8.4:27701053-27701072 | None:intergenic | 10.0% |
!!! | ACATTTTTAGTTTAATATTT+TGG | + | chr8.4:27701781-27701800 | MS.gene28539:intron | 10.0% |
!!! | ATAATCTTATTGATATTTTT+TGG | + | chr8.4:27702540-27702559 | MS.gene28539:intron | 10.0% |
!!! | CATTTTTAGTTTAATATTTT+GGG | + | chr8.4:27701782-27701801 | MS.gene28539:intron | 10.0% |
!! | AACAATATTAAAAAACCATT+TGG | - | chr8.4:27700523-27700542 | None:intergenic | 15.0% |
!! | ATATTATGTTTAATTACTAC+CGG | + | chr8.4:27701836-27701855 | MS.gene28539:intron | 15.0% |
!! | TAAAATCTATTTCCAATAAA+AGG | - | chr8.4:27701726-27701745 | None:intergenic | 15.0% |
!! | TTCAACATTTGATTAAAAAT+AGG | - | chr8.4:27700755-27700774 | None:intergenic | 15.0% |
!! | TTGAATATATATCTAATCAA+AGG | - | chr8.4:27700432-27700451 | None:intergenic | 15.0% |
!!! | TATTTTTAATCAAATGTTGA+AGG | + | chr8.4:27700754-27700773 | MS.gene28539:CDS | 15.0% |
!!! | TTTTAATATTGTTAATGACA+TGG | + | chr8.4:27700530-27700549 | MS.gene28539:intron | 15.0% |
!! | AAGTTAAAAAAACAAAGAGA+CGG | - | chr8.4:27700100-27700119 | None:intergenic | 20.0% |
!! | AATTTGCAATAATTGTCATT+AGG | - | chr8.4:27700716-27700735 | None:intergenic | 20.0% |
!! | ATTTGCAATAATTGTCATTA+GGG | - | chr8.4:27700715-27700734 | None:intergenic | 20.0% |
!! | CAAAATTTATTACTGAAATC+TGG | - | chr8.4:27701635-27701654 | None:intergenic | 20.0% |
!! | GGAATCATAACTAAAATAAT+TGG | + | chr8.4:27702750-27702769 | MS.gene28539:intron | 20.0% |
!! | TACAAAAGAAAGGTTTAAAA+AGG | - | chr8.4:27700925-27700944 | None:intergenic | 20.0% |
!! | TATTCTTCATTTCTGTTAAA+GGG | - | chr8.4:27701663-27701682 | None:intergenic | 20.0% |
!!! | AAGAAAAGTTTTAACATTTG+TGG | - | chr8.4:27701018-27701037 | None:intergenic | 20.0% |
!!! | AATAAAAGGACATAGTTTTA+AGG | - | chr8.4:27703091-27703110 | None:intergenic | 20.0% |
!!! | ATAAAAGGACATAGTTTTAA+GGG | - | chr8.4:27703090-27703109 | None:intergenic | 20.0% |
!!! | GTTTAATATTTTGGGTTTAA+TGG | + | chr8.4:27701790-27701809 | MS.gene28539:intron | 20.0% |
!!! | TCTTATTTACTCAATAACTT+CGG | + | chr8.4:27702496-27702515 | MS.gene28539:intron | 20.0% |
!!! | TTATATTTTACCTCTGATTA+AGG | + | chr8.4:27702159-27702178 | MS.gene28539:intron | 20.0% |
! | AAGCTAGAAGTTATTATGAA+AGG | + | chr8.4:27700330-27700349 | MS.gene28539:intron | 25.0% |
! | AGATATATATTCAAAGATCC+TGG | + | chr8.4:27700438-27700457 | MS.gene28539:intron | 25.0% |
! | AGATCTAATAATACATCTGT+AGG | + | chr8.4:27701181-27701200 | MS.gene28539:intron | 25.0% |
! | AGGTATTTGTATAATGTAGT+TGG | + | chr8.4:27701371-27701390 | MS.gene28539:intron | 25.0% |
! | AGTTAAAAAAACAAAGAGAC+GGG | - | chr8.4:27700099-27700118 | None:intergenic | 25.0% |
! | CATTTGATTAACAACTTGAA+TGG | - | chr8.4:27700035-27700054 | None:intergenic | 25.0% |
! | CCAAAGTAATTAAAATCAAC+TGG | - | chr8.4:27702046-27702065 | None:intergenic | 25.0% |
! | CCTTGAAAATCTGAATTTAT+TGG | + | chr8.4:27700952-27700971 | MS.gene28539:intron | 25.0% |
! | CTATTCTTCATTTCTGTTAA+AGG | - | chr8.4:27701664-27701683 | None:intergenic | 25.0% |
! | TAATAATACATCTGTAGGAA+TGG | + | chr8.4:27701186-27701205 | MS.gene28539:intron | 25.0% |
! | TTAGAATACATATATTCTGC+TGG | + | chr8.4:27702112-27702131 | MS.gene28539:intron | 25.0% |
! | TTTGTCAAGGTAATCTAAAT+CGG | + | chr8.4:27700851-27700870 | MS.gene28539:intron | 25.0% |
!! | AATCATTTCGTTCCTTTTAT+TGG | + | chr8.4:27701711-27701730 | MS.gene28539:intron | 25.0% |
!! | CCAATAAATTCAGATTTTCA+AGG | - | chr8.4:27700955-27700974 | None:intergenic | 25.0% |
!! | GCTTATAAAGTTTTTGTCTT+TGG | + | chr8.4:27700124-27700143 | MS.gene28539:intron | 25.0% |
!!! | AGTACATAAGTTTTGTAATG+CGG | - | chr8.4:27700825-27700844 | None:intergenic | 25.0% |
!!! | ATGGATGATTTTGAAACAAT+TGG | + | chr8.4:27702729-27702748 | MS.gene28539:intron | 25.0% |
!!! | CATTCAAGTTGTTAATCAAA+TGG | + | chr8.4:27700033-27700052 | MS.gene28539:CDS | 25.0% |
!!! | CCAGTTGATTTTAATTACTT+TGG | + | chr8.4:27702043-27702062 | MS.gene28539:intron | 25.0% |
!!! | TAGTTTTAAGGGATATAGTA+CGG | - | chr8.4:27703079-27703098 | None:intergenic | 25.0% |
!!! | TCATAATAACTTCTAGCTTA+TGG | - | chr8.4:27700329-27700348 | None:intergenic | 25.0% |
AAAATGCCAAAATGTTACGT+CGG | - | chr8.4:27702020-27702039 | None:intergenic | 30.0% | |
AATACTGCACAAGAATTTGA+TGG | + | chr8.4:27702924-27702943 | MS.gene28539:CDS | 30.0% | |
AATATAATCTCCTTCATCAG+AGG | - | chr8.4:27702146-27702165 | None:intergenic | 30.0% | |
AATATTCCAGTTTATTGTCC+AGG | + | chr8.4:27702576-27702595 | MS.gene28539:CDS | 30.0% | |
ACCTGGTTTAGTGAAATAAA+AGG | - | chr8.4:27703105-27703124 | None:intergenic | 30.0% | |
ACTTCTAATCTTATCTCTTC+TGG | + | chr8.4:27700248-27700267 | MS.gene28539:CDS | 30.0% | |
AGGAAACTACAGTATAACAA+TGG | - | chr8.4:27702425-27702444 | None:intergenic | 30.0% | |
AGTTTACACCTGCTATATAT+TGG | + | chr8.4:27701434-27701453 | MS.gene28539:intron | 30.0% | |
ATGATACTAGTAGGAATGTA+TGG | + | chr8.4:27701301-27701320 | MS.gene28539:intron | 30.0% | |
ATTATGTTCTTGTTGAGTCA+TGG | + | chr8.4:27701481-27701500 | MS.gene28539:intron | 30.0% | |
CACAAATACATAATATCCCA+AGG | - | chr8.4:27701580-27701599 | None:intergenic | 30.0% | |
CATGTTATTGTTACAACTAC+AGG | + | chr8.4:27700575-27700594 | MS.gene28539:CDS | 30.0% | |
CATTGTATAAAAGAGAGAAC+TGG | - | chr8.4:27701145-27701164 | None:intergenic | 30.0% | |
GAATCGAATCGGTAATTTAT+TGG | + | chr8.4:27700688-27700707 | MS.gene28539:CDS | 30.0% | |
GAGTCATGGTTTCTAATAAT+TGG | + | chr8.4:27701495-27701514 | MS.gene28539:intron | 30.0% | |
GATATTACGTTTGATTGTTC+TGG | + | chr8.4:27701522-27701541 | MS.gene28539:intron | 30.0% | |
GCAGTAAAGAGTAAAAAGAA+TGG | - | chr8.4:27702709-27702728 | None:intergenic | 30.0% | |
GGGATATTATGTATTTGTGA+TGG | + | chr8.4:27701581-27701600 | MS.gene28539:intron | 30.0% | |
GTTACATACAAAATGCAACA+TGG | + | chr8.4:27702457-27702476 | MS.gene28539:intron | 30.0% | |
TACATTCCTACTAGTATCAT+CGG | - | chr8.4:27701301-27701320 | None:intergenic | 30.0% | |
TATATATTCAAAGATCCTGG+TGG | + | chr8.4:27700441-27700460 | MS.gene28539:intron | 30.0% | |
TCAAAAGGATTGAATCGAAT+CGG | + | chr8.4:27700677-27700696 | MS.gene28539:CDS | 30.0% | |
TGACAATTATTGCAAATTCC+AGG | + | chr8.4:27700718-27700737 | MS.gene28539:CDS | 30.0% | |
! | AACAAGTAGCGAAAGTATAT+AGG | - | chr8.4:27703029-27703048 | None:intergenic | 30.0% |
! | AAGACAGGCATGATTATTTT+AGG | + | chr8.4:27702828-27702847 | MS.gene28539:CDS | 30.0% |
! | ATGTACTTCAGTTTTTGTCA+AGG | + | chr8.4:27700838-27700857 | MS.gene28539:intron | 30.0% |
! | TATTTTACCTCTGATTAAGG+AGG | + | chr8.4:27702162-27702181 | MS.gene28539:intron | 30.0% |
! | TCTTTTTACTCTTTACTGCA+TGG | + | chr8.4:27702710-27702729 | MS.gene28539:intron | 30.0% |
!! | CTTAATAAGCATGTTTTGAG+TGG | + | chr8.4:27701242-27701261 | MS.gene28539:intron | 30.0% |
!! | GTACATAAGTTTTGTAATGC+GGG | - | chr8.4:27700824-27700843 | None:intergenic | 30.0% |
!! | TCCTTTTATTTCACTAAACC+AGG | + | chr8.4:27703101-27703120 | MS.gene28539:intron | 30.0% |
!! | TGAAAACTTGCTAAACCAAA+TGG | + | chr8.4:27700505-27700524 | MS.gene28539:intron | 30.0% |
!! | TTTTGTCGACTGTGAAAAAA+AGG | + | chr8.4:27699832-27699851 | MS.gene28539:CDS | 30.0% |
!!! | AAGTTTTTGTCTTTGGAACA+TGG | + | chr8.4:27700131-27700150 | MS.gene28539:intron | 30.0% |
!!! | AGTTTTTGTCTTTGGAACAT+GGG | + | chr8.4:27700132-27700151 | MS.gene28539:intron | 30.0% |
AAAAAAACAAAGAGACGGGT+TGG | - | chr8.4:27700095-27700114 | None:intergenic | 35.0% | |
AAAAGAACCTCCTTAATCAG+AGG | - | chr8.4:27702172-27702191 | None:intergenic | 35.0% | |
AAAGACAATGACTTCCTCAT+TGG | + | chr8.4:27700388-27700407 | MS.gene28539:intron | 35.0% | |
AAATAGGAATAATCCAGTCC+TGG | - | chr8.4:27700739-27700758 | None:intergenic | 35.0% | |
AATCAAACCAGACATTGAAC+CGG | - | chr8.4:27701904-27701923 | None:intergenic | 35.0% | |
ACACCTAAACTAACAGTCTA+TGG | - | chr8.4:27700356-27700375 | None:intergenic | 35.0% | |
ACACCTGCTATATATTGGTA+GGG | + | chr8.4:27701439-27701458 | MS.gene28539:intron | 35.0% | |
ACTGAAATCTGGATGCATAT+AGG | - | chr8.4:27701624-27701643 | None:intergenic | 35.0% | |
AGGTGAGTGATACAAAAGAA+AGG | - | chr8.4:27700935-27700954 | None:intergenic | 35.0% | |
ATAATCATGCCTGTCTTCAT+AGG | - | chr8.4:27702825-27702844 | None:intergenic | 35.0% | |
ATCACTACAATCGTCAGTAA+TGG | - | chr8.4:27700192-27700211 | None:intergenic | 35.0% | |
ATCCAAGTTAATAGCTCGTT+TGG | + | chr8.4:27702265-27702284 | MS.gene28539:CDS | 35.0% | |
ATTATTGCAAATTCCAGGAC+TGG | + | chr8.4:27700723-27700742 | MS.gene28539:CDS | 35.0% | |
ATTCTCCAGTCAAGGTTTAA+TGG | - | chr8.4:27701878-27701897 | None:intergenic | 35.0% | |
CTGAAATCTGGATGCATATA+GGG | - | chr8.4:27701623-27701642 | None:intergenic | 35.0% | |
GAATTTGATGGAAGTGATTC+TGG | + | chr8.4:27702936-27702955 | MS.gene28539:CDS | 35.0% | |
GACGAAATGACAATAGCTAT+TGG | + | chr8.4:27701943-27701962 | MS.gene28539:intron | 35.0% | |
GAGAAATCTCCTTTATACGT+TGG | - | chr8.4:27700635-27700654 | None:intergenic | 35.0% | |
GTTAATCCTGGACAATAAAC+TGG | - | chr8.4:27702585-27702604 | None:intergenic | 35.0% | |
GTTATTGTTACAACTACAGG+TGG | + | chr8.4:27700578-27700597 | MS.gene28539:CDS | 35.0% | |
TAAAGTTCCACGTTGCTTAA+AGG | - | chr8.4:27701098-27701117 | None:intergenic | 35.0% | |
TACACCTGCTATATATTGGT+AGG | + | chr8.4:27701438-27701457 | MS.gene28539:intron | 35.0% | |
TCAAGGTAATCTAAATCGGA+TGG | + | chr8.4:27700855-27700874 | MS.gene28539:intron | 35.0% | |
TCAAGGTTTAATGGTTAGAC+CGG | - | chr8.4:27701869-27701888 | None:intergenic | 35.0% | |
TCACTACAATCGTCAGTAAT+GGG | - | chr8.4:27700191-27700210 | None:intergenic | 35.0% | |
TCCAAGTTAATAGCTCGTTT+GGG | + | chr8.4:27702266-27702285 | MS.gene28539:CDS | 35.0% | |
TCTAACCATTAAACCTTGAC+TGG | + | chr8.4:27701870-27701889 | MS.gene28539:intron | 35.0% | |
TGGCAATGCAACAGATATAA+GGG | + | chr8.4:27702770-27702789 | MS.gene28539:intron | 35.0% | |
TGGTACTCATGTTATTCTAC+AGG | + | chr8.4:27700550-27700569 | MS.gene28539:intron | 35.0% | |
TGTAGGAATGGAAATACTGA+CGG | + | chr8.4:27701198-27701217 | MS.gene28539:intron | 35.0% | |
TTACTGACGATTGTAGTGAT+CGG | + | chr8.4:27700192-27700211 | MS.gene28539:CDS | 35.0% | |
TTGATTCCGATGATACTAGT+AGG | + | chr8.4:27701292-27701311 | MS.gene28539:intron | 35.0% | |
TTGGCAATGCAACAGATATA+AGG | + | chr8.4:27702769-27702788 | MS.gene28539:intron | 35.0% | |
TTTCTCTACAATTGCCAATG+AGG | - | chr8.4:27700405-27700424 | None:intergenic | 35.0% | |
! | AAAATGATGATGCAGAAGAG+AGG | + | chr8.4:27701351-27701370 | MS.gene28539:intron | 35.0% |
! | AAACGAGCTATTAACTTGGA+TGG | - | chr8.4:27702266-27702285 | None:intergenic | 35.0% |
! | ATGGGTTGAATTAGCTTGAT+TGG | + | chr8.4:27700150-27700169 | MS.gene28539:intron | 35.0% |
! | TAAGTGGTGCATGTTTGTTA+AGG | + | chr8.4:27701408-27701427 | MS.gene28539:intron | 35.0% |
! | TGCATTTTGTATGTAACTGC+AGG | - | chr8.4:27702454-27702473 | None:intergenic | 35.0% |
!! | ATGTTTTGAGTGGCAATAGT+AGG | + | chr8.4:27701252-27701271 | MS.gene28539:intron | 35.0% |
!!! | ACAGGCATGATTATTTTAGG+AGG | + | chr8.4:27702831-27702850 | MS.gene28539:CDS | 35.0% |
!!! | CATCTTCCTTTTTTGACAGA+AGG | + | chr8.4:27702229-27702248 | MS.gene28539:intron | 35.0% |
!!! | GGCATTTGTTTTGATGTAAG+TGG | + | chr8.4:27701392-27701411 | MS.gene28539:intron | 35.0% |
!!! | TTCGGATTTTTTGAAGACTG+TGG | - | chr8.4:27699894-27699913 | None:intergenic | 35.0% |
AAAGGAGATTTCTCTTTGCC+TGG | + | chr8.4:27700641-27700660 | MS.gene28539:CDS | 40.0% | |
AATGTATGGTGTGTAGCAGT+TGG | + | chr8.4:27701315-27701334 | MS.gene28539:intron | 40.0% | |
ACAGATATAAGGGCCATGAA+TGG | + | chr8.4:27702780-27702799 | MS.gene28539:intron | 40.0% | |
ACATACACAAGTGAGGAACT+GGG | + | chr8.4:27701972-27701991 | MS.gene28539:intron | 40.0% | |
ACATTAAGACCACAGTTGTC+AGG | - | chr8.4:27702663-27702682 | None:intergenic | 40.0% | |
ACTGCACCTTCTGTCAAAAA+AGG | - | chr8.4:27702238-27702257 | None:intergenic | 40.0% | |
AGGATCTGCGAAAACTGTTA+AGG | + | chr8.4:27702998-27703017 | MS.gene28539:CDS | 40.0% | |
ATGAAAGCTCCTACCTTTAC+TGG | + | chr8.4:27702303-27702322 | MS.gene28539:CDS | 40.0% | |
ATGGAAATACTGACGGAGAA+AGG | + | chr8.4:27701205-27701224 | MS.gene28539:intron | 40.0% | |
ATGTACAGCTTCACCATTCA+TGG | - | chr8.4:27702796-27702815 | None:intergenic | 40.0% | |
ATGTATGGTGTGTAGCAGTT+GGG | + | chr8.4:27701316-27701335 | MS.gene28539:intron | 40.0% | |
CGATTGTAGTGATCGGAAAT+CGG | + | chr8.4:27700199-27700218 | MS.gene28539:CDS | 40.0% | |
CTAAATCGGATGGTTTGACT+GGG | + | chr8.4:27700865-27700884 | MS.gene28539:intron | 40.0% | |
CTTAATGTGGACATAGTGCA+AGG | + | chr8.4:27702675-27702694 | MS.gene28539:CDS | 40.0% | |
GAAACTCACATACACAAGTG+AGG | + | chr8.4:27701965-27701984 | MS.gene28539:intron | 40.0% | |
GCGTTGCAAATGTGATGTTT+CGG | - | chr8.4:27702864-27702883 | None:intergenic | 40.0% | |
GGATAAAGAACCTCTGATGA+AGG | + | chr8.4:27702133-27702152 | MS.gene28539:intron | 40.0% | |
GTTATCTCCTTTAAGCAACG+TGG | + | chr8.4:27701088-27701107 | MS.gene28539:intron | 40.0% | |
GTTGAAGGAACAAACTCATG+AGG | + | chr8.4:27700769-27700788 | MS.gene28539:CDS | 40.0% | |
GTTTAAAAAGGTCTGACCCT+CGG | - | chr8.4:27700913-27700932 | None:intergenic | 40.0% | |
TATGTAACTGCAGGACATCA+AGG | - | chr8.4:27702445-27702464 | None:intergenic | 40.0% | |
TATTGTCCAGGATTAACCGA+TGG | + | chr8.4:27702588-27702607 | MS.gene28539:CDS | 40.0% | |
TCCCAAACGAGCTATTAACT+TGG | - | chr8.4:27702270-27702289 | None:intergenic | 40.0% | |
TCTAAATCGGATGGTTTGAC+TGG | + | chr8.4:27700864-27700883 | MS.gene28539:intron | 40.0% | |
TGAAAGCTCCTACCTTTACT+GGG | + | chr8.4:27702304-27702323 | MS.gene28539:CDS | 40.0% | |
TGCAAATGTGATGTTTCGGA+AGG | - | chr8.4:27702860-27702879 | None:intergenic | 40.0% | |
TTGAAAACCAGTAGTGAGCA+TGG | - | chr8.4:27699993-27700012 | None:intergenic | 40.0% | |
TTTCATTCCTTCCACAACAC+TGG | + | chr8.4:27702633-27702652 | MS.gene28539:CDS | 40.0% | |
! | AGGCCATAGACTGTTAGTTT+AGG | + | chr8.4:27700350-27700369 | MS.gene28539:intron | 40.0% |
! | CTCGATTTGAAGACACTTTC+CGG | - | chr8.4:27699924-27699943 | None:intergenic | 40.0% |
! | GCTACGTGTAAAGTGTTTCT+GGG | + | chr8.4:27700221-27700240 | MS.gene28539:CDS | 40.0% |
! | GGTTGAATTAGCTTGATTGG+AGG | + | chr8.4:27700153-27700172 | MS.gene28539:intron | 40.0% |
! | TGACAACTGTGGTCTTAATG+TGG | + | chr8.4:27702662-27702681 | MS.gene28539:CDS | 40.0% |
!! | AATTACTACCGGTTCAACTC+CGG | + | chr8.4:27701847-27701866 | MS.gene28539:intron | 40.0% |
!! | AGAGCTTTATTAAAGCCACC+AGG | - | chr8.4:27700459-27700478 | None:intergenic | 40.0% |
!! | CCATGTGATTTTAGTGCCTT+GGG | + | chr8.4:27701561-27701580 | MS.gene28539:intron | 40.0% |
!! | GGAAAGTGTCTTCAAATCGA+GGG | + | chr8.4:27699923-27699942 | MS.gene28539:CDS | 40.0% |
!!! | CTTTGGTTTTTGTCAATGCC+TGG | + | chr8.4:27702060-27702079 | MS.gene28539:intron | 40.0% |
!!! | GGCATGATTATTTTAGGAGG+TGG | + | chr8.4:27702834-27702853 | MS.gene28539:CDS | 40.0% |
!!! | TTTTTTGACAGAAGGTGCAG+TGG | + | chr8.4:27702237-27702256 | MS.gene28539:intron | 40.0% |
AAAAAATCCGAAAGCCTCGC+CGG | + | chr8.4:27699902-27699921 | MS.gene28539:CDS | 45.0% | |
AACGCCAACATGATGCGTAA+TGG | + | chr8.4:27702879-27702898 | MS.gene28539:CDS | 45.0% | |
AATGTTTCAGCAACCAGCAG+TGG | - | chr8.4:27703153-27703172 | None:intergenic | 45.0% | |
ACAGTCGACAAAAGCAGAGT+CGG | - | chr8.4:27699825-27699844 | None:intergenic | 45.0% | |
ACCTTGACTGGAGAATACAC+CGG | + | chr8.4:27701882-27701901 | MS.gene28539:intron | 45.0% | |
ACGTTTGATTGTTCTGGTGC+TGG | + | chr8.4:27701528-27701547 | MS.gene28539:intron | 45.0% | |
AGGATTAACCGATGGCTCAT+TGG | + | chr8.4:27702596-27702615 | MS.gene28539:CDS | 45.0% | |
ATGCCTGGAGTCACATTTAG+TGG | + | chr8.4:27702075-27702094 | MS.gene28539:intron | 45.0% | |
ATGTTTCAGCAACCAGCAGT+GGG | - | chr8.4:27703152-27703171 | None:intergenic | 45.0% | |
CACATACACAAGTGAGGAAC+TGG | + | chr8.4:27701971-27701990 | MS.gene28539:intron | 45.0% | |
CATACACAAGTGAGGAACTG+GGG | + | chr8.4:27701973-27701992 | MS.gene28539:intron | 45.0% | |
CATGCAGATCCTATGAAGAC+AGG | + | chr8.4:27702813-27702832 | MS.gene28539:CDS | 45.0% | |
CTACCTTTACTGGGCATACA+AGG | + | chr8.4:27702313-27702332 | MS.gene28539:CDS | 45.0% | |
CTCAAATCCATGCTCACTAC+TGG | + | chr8.4:27699983-27700002 | MS.gene28539:CDS | 45.0% | |
CTCCTTTATACGTTGGTGCA+AGG | - | chr8.4:27700628-27700647 | None:intergenic | 45.0% | |
CTTCCTTTGTCAGCATCACA+TGG | + | chr8.4:27700289-27700308 | MS.gene28539:CDS | 45.0% | |
CTTGTATGCCCAGTAAAGGT+AGG | - | chr8.4:27702315-27702334 | None:intergenic | 45.0% | |
GAGGGTTATGATTTCAACCG+CGG | + | chr8.4:27699941-27699960 | MS.gene28539:CDS | 45.0% | |
GCTCCCTACCAATATATAGC+AGG | - | chr8.4:27701445-27701464 | None:intergenic | 45.0% | |
GGAGCTTATCTTCGCTCAAA+AGG | + | chr8.4:27700662-27700681 | MS.gene28539:CDS | 45.0% | |
GGATTAACCGATGGCTCATT+GGG | + | chr8.4:27702597-27702616 | MS.gene28539:CDS | 45.0% | |
GTTTCATGGGGGAAAATACG+AGG | + | chr8.4:27702978-27702997 | MS.gene28539:CDS | 45.0% | |
TCACCATGTGATGCTGACAA+AGG | - | chr8.4:27700295-27700314 | None:intergenic | 45.0% | |
TCGTTGCATCACAATGTACC+TGG | - | chr8.4:27703122-27703141 | None:intergenic | 45.0% | |
TGACCACTAAATGTGACTCC+AGG | - | chr8.4:27702081-27702100 | None:intergenic | 45.0% | |
TGCACCATTACGCATCATGT+TGG | - | chr8.4:27702886-27702905 | None:intergenic | 45.0% | |
TGCCTTGCACCAACGTATAA+AGG | + | chr8.4:27700623-27700642 | MS.gene28539:CDS | 45.0% | |
TTGCCTTGTATGCCCAGTAA+AGG | - | chr8.4:27702319-27702338 | None:intergenic | 45.0% | |
TTTGAGCGAAGATAAGCTCC+AGG | - | chr8.4:27700662-27700681 | None:intergenic | 45.0% | |
! | AATGAGCCATCGGTTAATCC+TGG | - | chr8.4:27702597-27702616 | None:intergenic | 45.0% |
! | ATCCAGATGAGGCTGTTTCA+TGG | + | chr8.4:27702964-27702983 | MS.gene28539:CDS | 45.0% |
! | CCCAAGGCACTAAAATCACA+TGG | - | chr8.4:27701564-27701583 | None:intergenic | 45.0% |
! | GGCTACGTGTAAAGTGTTTC+TGG | + | chr8.4:27700220-27700239 | MS.gene28539:CDS | 45.0% |
! | TCCAGATGAGGCTGTTTCAT+GGG | + | chr8.4:27702965-27702984 | MS.gene28539:CDS | 45.0% |
!! | CGGAAAGTGTCTTCAAATCG+AGG | + | chr8.4:27699922-27699941 | MS.gene28539:CDS | 45.0% |
!! | GAATACACCGGTTCAATGTC+TGG | + | chr8.4:27701894-27701913 | MS.gene28539:intron | 45.0% |
!! | GCCATGTGATTTTAGTGCCT+TGG | + | chr8.4:27701560-27701579 | MS.gene28539:intron | 45.0% |
!! | GGTTTTCAAGCATCCAACCT+CGG | + | chr8.4:27700004-27700023 | MS.gene28539:CDS | 45.0% |
!!! | GATTTTAAAAATTATAATTT+TGG | + | chr8.4:27701739-27701758 | MS.gene28539:intron | 5.0% |
AACGATAGCATTCCCACTGC+TGG | + | chr8.4:27703137-27703156 | MS.gene28539:CDS | 50.0% | |
ACCGGTGTATTCTCCAGTCA+AGG | - | chr8.4:27701886-27701905 | None:intergenic | 50.0% | |
CAACTTGAATGGCTTCACCG+AGG | - | chr8.4:27700024-27700043 | None:intergenic | 50.0% | |
CATGTCACCCAATGAGCCAT+CGG | - | chr8.4:27702607-27702626 | None:intergenic | 50.0% | |
CGGATGGTTTGACTGGGAAT+TGG | + | chr8.4:27700871-27700890 | MS.gene28539:intron | 50.0% | |
CTGGGAATTGGACCTATGTC+CGG | + | chr8.4:27700883-27700902 | MS.gene28539:intron | 50.0% | |
TGGTTAGACCGGAGTTGAAC+CGG | - | chr8.4:27701858-27701877 | None:intergenic | 50.0% | |
TTGAATGGCTTCACCGAGGT+TGG | - | chr8.4:27700020-27700039 | None:intergenic | 50.0% | |
TTTGAAGACACTTTCCGGCG+AGG | - | chr8.4:27699919-27699938 | None:intergenic | 50.0% | |
! | CAGATGAGGCTGTTTCATGG+GGG | + | chr8.4:27702967-27702986 | MS.gene28539:CDS | 50.0% |
! | CCAGATGAGGCTGTTTCATG+GGG | + | chr8.4:27702966-27702985 | MS.gene28539:CDS | 50.0% |
!! | TTCTGGAGCTCATCCAGATG+AGG | + | chr8.4:27702953-27702972 | MS.gene28539:CDS | 50.0% |
AAATGTTACGTCGGACGCCG+TGG | - | chr8.4:27702011-27702030 | None:intergenic | 55.0% | |
ACACTTTCCGGCGAGGCTTT+CGG | - | chr8.4:27699912-27699931 | None:intergenic | 55.0% | |
ACCTATGTCCGGAAGACCGA+GGG | + | chr8.4:27700894-27700913 | MS.gene28539:intron | 55.0% | |
ACTGGCAGTCCTGACAACTG+TGG | + | chr8.4:27702651-27702670 | MS.gene28539:CDS | 55.0% | |
AGGACTGCCAGTGTTGTGGA+AGG | - | chr8.4:27702643-27702662 | None:intergenic | 55.0% | |
CCCCATGAAACAGCCTCATC+TGG | - | chr8.4:27702969-27702988 | None:intergenic | 55.0% | |
TGTCAGGACTGCCAGTGTTG+TGG | - | chr8.4:27702647-27702666 | None:intergenic | 55.0% | |
! | CGGCGTCCGACGTAACATTT+TGG | + | chr8.4:27702011-27702030 | MS.gene28539:intron | 55.0% |
!! | GCTGTTGATAATCGACGCCG+CGG | - | chr8.4:27699961-27699980 | None:intergenic | 55.0% |
!! | GTTCTGGTGCTGGTTCGACT+GGG | + | chr8.4:27701538-27701557 | MS.gene28539:intron | 55.0% |
!! | TGTTCTGGTGCTGGTTCGAC+TGG | + | chr8.4:27701537-27701556 | MS.gene28539:intron | 55.0% |
ACCCTCGGTCTTCCGGACAT+AGG | - | chr8.4:27700898-27700917 | None:intergenic | 60.0% | |
AGGTCTGACCCTCGGTCTTC+CGG | - | chr8.4:27700905-27700924 | None:intergenic | 60.0% | |
GACCTATGTCCGGAAGACCG+AGG | + | chr8.4:27700893-27700912 | MS.gene28539:intron | 60.0% | |
TGGGGTTCGAACCCCAGCCA+CGG | + | chr8.4:27701991-27702010 | MS.gene28539:intron | 65.0% | |
TTACGTCGGACGCCGTGGCT+GGG | - | chr8.4:27702006-27702025 | None:intergenic | 65.0% | |
GTTACGTCGGACGCCGTGGC+TGG | - | chr8.4:27702007-27702026 | None:intergenic | 70.0% | |
TACGTCGGACGCCGTGGCTG+GGG | - | chr8.4:27702005-27702024 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 27699806 | 27703200 | 27699806 | ID=MS.gene28539 |
chr8.4 | mRNA | 27699806 | 27703200 | 27699806 | ID=MS.gene28539.t1;Parent=MS.gene28539 |
chr8.4 | exon | 27699806 | 27700054 | 27699806 | ID=MS.gene28539.t1.exon1;Parent=MS.gene28539.t1 |
chr8.4 | CDS | 27699806 | 27700054 | 27699806 | ID=cds.MS.gene28539.t1;Parent=MS.gene28539.t1 |
chr8.4 | exon | 27700164 | 27700310 | 27700164 | ID=MS.gene28539.t1.exon2;Parent=MS.gene28539.t1 |
chr8.4 | CDS | 27700164 | 27700310 | 27700164 | ID=cds.MS.gene28539.t1;Parent=MS.gene28539.t1 |
chr8.4 | exon | 27700572 | 27700790 | 27700572 | ID=MS.gene28539.t1.exon3;Parent=MS.gene28539.t1 |
chr8.4 | CDS | 27700572 | 27700790 | 27700572 | ID=cds.MS.gene28539.t1;Parent=MS.gene28539.t1 |
chr8.4 | exon | 27702248 | 27702334 | 27702248 | ID=MS.gene28539.t1.exon4;Parent=MS.gene28539.t1 |
chr8.4 | CDS | 27702248 | 27702334 | 27702248 | ID=cds.MS.gene28539.t1;Parent=MS.gene28539.t1 |
chr8.4 | exon | 27702573 | 27702696 | 27702573 | ID=MS.gene28539.t1.exon5;Parent=MS.gene28539.t1 |
chr8.4 | CDS | 27702573 | 27702696 | 27702573 | ID=cds.MS.gene28539.t1;Parent=MS.gene28539.t1 |
chr8.4 | exon | 27702784 | 27703019 | 27702784 | ID=MS.gene28539.t1.exon6;Parent=MS.gene28539.t1 |
chr8.4 | CDS | 27702784 | 27703019 | 27702784 | ID=cds.MS.gene28539.t1;Parent=MS.gene28539.t1 |
chr8.4 | exon | 27703123 | 27703200 | 27703123 | ID=MS.gene28539.t1.exon7;Parent=MS.gene28539.t1 |
chr8.4 | CDS | 27703123 | 27703200 | 27703123 | ID=cds.MS.gene28539.t1;Parent=MS.gene28539.t1 |
Gene Sequence |
Protein sequence |