AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28631

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28631.t1 MTR_7g110710 98.498 466 7 0 1 466 1 466 0.0 944
MS.gene28631.t1 MTR_7g110710 98.056 463 9 0 1 463 1 463 0.0 932
MS.gene28631.t1 MTR_1g086030 80.819 464 82 2 9 466 48 510 0.0 760
MS.gene28631.t1 MTR_1g086030 75.798 376 84 2 97 466 32 406 0.0 587
MS.gene28631.t1 MTR_8g098840 57.000 400 169 1 39 435 40 439 5.31e-167 479
MS.gene28631.t1 MTR_4g120730 57.538 398 167 1 37 432 34 431 2.75e-164 471
MS.gene28631.t1 MTR_2g435340 53.110 418 193 2 39 454 33 449 1.92e-163 469
MS.gene28631.t1 MTR_1g100060 56.000 400 173 1 39 435 89 488 8.20e-161 465
MS.gene28631.t1 MTR_1g100050 52.887 433 195 3 10 435 15 445 5.57e-158 456
MS.gene28631.t1 MTR_8g028725 52.414 435 201 3 19 450 33 464 6.31e-158 456
MS.gene28631.t1 MTR_3g449590 51.802 444 206 4 4 443 10 449 1.11e-157 454
MS.gene28631.t1 MTR_7g078680 54.034 409 184 2 39 444 51 458 1.31e-156 453
MS.gene28631.t1 MTR_7g088550 53.865 414 181 3 32 435 35 448 1.69e-156 452
MS.gene28631.t1 MTR_1g100040 51.790 419 189 2 30 435 33 451 7.11e-152 441
MS.gene28631.t1 MTR_1g099850 51.250 400 192 1 39 435 51 450 1.04e-148 432
MS.gene28631.t1 MTR_3g096330 52.736 402 187 2 35 433 66 467 8.51e-146 435
MS.gene28631.t1 MTR_4g124980 47.253 455 228 5 5 455 38 484 6.20e-144 421
MS.gene28631.t1 MTR_5g090160 51.818 440 192 6 7 432 5 438 1.51e-143 418
MS.gene28631.t1 MTR_2g042740 48.299 441 214 6 3 430 8 447 4.11e-141 413
MS.gene28631.t1 MTR_2g435340 48.529 340 172 2 117 454 46 384 3.21e-119 354
MS.gene28631.t1 MTR_2g083670 72.807 228 47 1 21 248 18 230 1.51e-110 326
MS.gene28631.t1 MTR_6g048610 41.954 174 64 2 232 405 20 156 5.72e-34 125
MS.gene28631.t1 MTR_2g042750 40.782 179 75 5 59 234 132 282 5.85e-30 118
MS.gene28631.t1 MTR_5g043350 30.114 352 206 10 15 358 3 322 8.33e-29 117
MS.gene28631.t1 MTR_3g084380 29.610 385 213 12 37 405 12 354 2.07e-28 116
MS.gene28631.t1 MTR_6g005630 29.003 331 180 10 37 353 39 328 1.61e-27 114
MS.gene28631.t1 MTR_6g028080 27.027 407 245 13 35 426 23 392 1.65e-27 114
MS.gene28631.t1 MTR_8g065030 30.321 343 201 12 43 377 65 377 5.24e-25 107
MS.gene28631.t1 MTR_8g010110 27.294 425 256 15 11 427 4 383 7.82e-24 103
MS.gene28631.t1 MTR_8g008765 29.032 341 184 13 44 375 32 323 7.09e-23 99.8
MS.gene28631.t1 MTR_8g010080 30.205 341 186 13 7 341 4 298 8.40e-23 100
MS.gene28631.t1 MTR_5g034090 26.149 348 185 10 44 353 122 435 1.55e-22 100
MS.gene28631.t1 MTR_3g054320 28.571 329 186 9 45 360 32 324 4.74e-22 98.2
MS.gene28631.t1 MTR_7g092470 25.405 370 214 10 42 397 47 368 6.02e-22 98.6
MS.gene28631.t1 MTR_1g012390 25.000 440 253 14 7 425 5 388 6.05e-22 97.8
MS.gene28631.t1 MTR_8g077320 27.108 332 194 8 26 352 15 303 1.79e-21 95.9
MS.gene28631.t1 MTR_5g033680 27.844 334 188 11 38 353 54 352 1.91e-21 97.1
MS.gene28631.t1 MTR_6g005630 27.301 326 169 9 37 353 39 305 2.07e-21 96.3
MS.gene28631.t1 MTR_8g010090 29.830 352 202 13 11 357 4 315 2.22e-21 96.3
MS.gene28631.t1 MTR_4g084050 28.205 351 200 13 44 380 24 336 3.95e-21 95.5
MS.gene28631.t1 MTR_8g009810 29.639 388 220 14 6 385 10 352 6.13e-21 94.7
MS.gene28631.t1 MTR_8g008700 28.873 284 157 8 149 427 43 286 2.30e-20 91.7
MS.gene28631.t1 MTR_4g083660 27.586 406 218 17 44 430 10 358 4.34e-20 92.0
MS.gene28631.t1 MTR_8g010070 34.197 193 103 6 155 342 128 301 4.97e-20 92.0
MS.gene28631.t1 MTR_3g084360 32.627 236 130 7 145 375 116 327 8.13e-20 91.7
MS.gene28631.t1 MTR_8g010040 29.143 350 206 10 7 354 4 313 9.10e-20 91.3
MS.gene28631.t1 MTR_2g103650 24.178 426 252 15 42 452 27 396 9.61e-20 91.3
MS.gene28631.t1 MTR_8g065010 27.119 354 179 12 42 353 106 422 9.84e-20 92.0
MS.gene28631.t1 MTR_7g035415 30.838 334 189 13 26 352 23 321 4.92e-19 88.6
MS.gene28631.t1 MTR_5g034090 26.140 329 143 10 44 320 122 402 5.40e-19 89.4
MS.gene28631.t1 MTR_2g060350 30.041 243 141 8 156 385 168 394 6.29e-19 89.4
MS.gene28631.t1 MTR_2g049400 25.581 430 262 16 10 429 9 390 2.20e-18 87.0
MS.gene28631.t1 MTR_2g103410 27.139 409 237 15 43 429 59 428 2.28e-18 87.8
MS.gene28631.t1 MTR_8g010050 27.586 319 181 13 30 337 17 296 4.14e-18 85.9
MS.gene28631.t1 MTR_2g029170 30.169 295 180 10 145 429 82 360 7.04e-18 85.5
MS.gene28631.t1 MTR_1g013740 25.463 432 246 15 11 428 16 385 1.33e-17 84.7
MS.gene28631.t1 MTR_4g094715 27.640 322 188 9 45 351 67 358 2.13e-17 84.7
MS.gene28631.t1 MTR_1g088160 27.129 317 192 9 45 352 37 323 2.82e-17 84.0
MS.gene28631.t1 MTR_3g030540 28.485 330 192 13 117 431 137 437 4.57e-17 83.6
MS.gene28631.t1 MTR_5g090140 32.967 182 79 6 256 432 1 144 7.72e-17 78.2
MS.gene28631.t1 MTR_7g091840 27.554 323 187 13 45 354 67 355 1.38e-16 81.6
MS.gene28631.t1 MTR_8g031180 38.667 150 73 4 197 341 71 206 2.13e-16 79.7
MS.gene28631.t1 MTR_4g120320 25.926 324 191 9 43 351 52 341 5.30e-16 80.1
MS.gene28631.t1 MTR_1g052315 27.835 291 183 11 156 434 160 435 7.13e-16 80.1
MS.gene28631.t1 MTR_1g086390 27.726 321 175 11 43 341 81 366 1.22e-15 79.3
MS.gene28631.t1 MTR_0157s0060 31.739 230 127 7 163 385 105 311 5.29e-15 76.6
MS.gene28631.t1 MTR_4g034020 31.739 230 127 7 163 385 105 311 5.29e-15 76.6
MS.gene28631.t1 MTR_1g013730 23.843 432 253 15 11 428 8 377 1.19e-14 75.9
MS.gene28631.t1 MTR_7g110050 27.640 322 169 12 45 341 69 351 1.35e-14 76.3
MS.gene28631.t1 MTR_2g103410 29.693 293 155 12 43 320 59 315 4.77e-14 73.6
MS.gene28631.t1 MTR_7g091850 27.160 324 187 12 43 353 76 363 9.39e-14 73.6
MS.gene28631.t1 MTR_2g435640 23.188 414 249 16 43 430 53 423 5.72e-13 70.9
MS.gene28631.t1 MTR_2g032710 27.982 218 129 5 148 351 157 360 4.25e-12 68.6
MS.gene28631.t1 MTR_7g113910 25.524 286 171 7 156 429 97 352 1.88e-11 65.9
MS.gene28631.t1 MTR_3g438050 27.113 284 166 10 44 320 28 277 3.39e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28631.t1 AT3G62110 68.499 473 140 6 1 466 1 471 0.0 655
MS.gene28631.t1 AT3G62110 68.499 473 140 6 1 466 1 471 0.0 655
MS.gene28631.t1 AT4G23500 55.750 400 174 1 39 435 64 463 2.54e-162 468
MS.gene28631.t1 AT3G61490 56.423 397 170 1 39 432 56 452 1.35e-161 466
MS.gene28631.t1 AT3G61490 56.423 397 170 1 39 432 41 437 2.62e-161 465
MS.gene28631.t1 AT3G61490 56.423 397 170 1 39 432 41 437 2.62e-161 465
MS.gene28631.t1 AT3G61490 56.423 397 170 1 39 432 41 437 2.62e-161 465
MS.gene28631.t1 AT3G61490 56.423 397 170 1 39 432 154 550 4.33e-161 468
MS.gene28631.t1 AT4G23820 52.045 440 208 2 8 445 6 444 3.60e-158 456
MS.gene28631.t1 AT3G16850 54.348 414 187 1 28 441 25 436 2.41e-157 454
MS.gene28631.t1 AT4G33440 56.091 394 172 1 43 435 72 465 6.14e-155 448
MS.gene28631.t1 AT3G48950 47.253 455 234 3 1 449 1 455 4.86e-153 443
MS.gene28631.t1 AT5G41870 51.522 427 204 3 8 432 10 435 1.10e-148 431
MS.gene28631.t1 AT5G49215 49.633 409 202 1 29 433 27 435 1.01e-145 424
MS.gene28631.t1 AT5G49215 49.633 409 202 1 29 433 29 437 1.18e-145 424
MS.gene28631.t1 AT2G23900 46.485 441 228 3 10 442 19 459 3.94e-142 416
MS.gene28631.t1 AT3G06770 50.503 398 195 1 39 434 39 436 9.43e-141 411
MS.gene28631.t1 AT3G06770 50.503 398 195 1 39 434 40 437 9.85e-141 411
MS.gene28631.t1 AT1G19170 48.628 401 201 4 35 430 79 479 1.47e-130 387
MS.gene28631.t1 AT3G42950 46.250 400 211 3 37 432 60 459 7.45e-129 382
MS.gene28631.t1 AT3G06770 47.541 366 190 1 71 434 2 367 1.80e-120 357
MS.gene28631.t1 AT3G06770 47.541 366 190 1 71 434 2 367 1.80e-120 357
MS.gene28631.t1 AT3G06770 43.966 348 188 2 94 434 2 349 6.25e-100 304
MS.gene28631.t1 AT3G15720 31.415 417 224 17 41 437 22 396 1.59e-33 132
MS.gene28631.t1 AT3G15720 31.415 417 224 17 41 437 21 395 1.96e-33 131
MS.gene28631.t1 AT3G15720 31.655 417 220 18 41 437 21 392 1.02e-31 127
MS.gene28631.t1 AT3G57790 28.800 375 205 10 42 399 34 363 1.72e-29 120
MS.gene28631.t1 AT3G57790 28.800 375 205 10 42 399 34 363 1.72e-29 120
MS.gene28631.t1 AT3G15720 32.792 308 171 11 146 437 45 332 1.88e-28 116
MS.gene28631.t1 AT5G17200 32.353 340 175 13 11 338 7 303 2.37e-27 114
MS.gene28631.t1 AT3G57510 28.198 383 218 12 38 411 63 397 4.18e-26 110
MS.gene28631.t1 AT1G10640 26.551 403 217 13 44 405 120 484 7.02e-26 110
MS.gene28631.t1 AT2G41850 29.820 389 200 14 40 411 65 397 2.08e-25 108
MS.gene28631.t1 AT5G14650 28.431 306 182 10 42 341 50 324 2.16e-25 108
MS.gene28631.t1 AT1G23460 29.191 346 201 11 43 377 43 355 7.51e-25 107
MS.gene28631.t1 AT1G23460 29.191 346 201 11 43 377 67 379 9.85e-25 106
MS.gene28631.t1 AT1G60590 25.124 402 227 11 44 405 124 491 1.23e-24 107
MS.gene28631.t1 AT1G70500 29.412 374 219 14 43 404 67 407 2.87e-24 105
MS.gene28631.t1 AT5G27530 30.625 320 169 11 44 354 54 329 1.25e-22 100
MS.gene28631.t1 AT4G32380 34.361 227 123 7 135 354 105 312 3.97e-22 99.0
MS.gene28631.t1 AT4G35670 30.945 307 167 11 44 340 25 296 4.86e-22 98.2
MS.gene28631.t1 AT4G35670 37.000 200 103 6 146 340 8 189 7.37e-22 95.9
MS.gene28631.t1 AT5G14650 28.421 285 167 10 42 320 50 303 9.96e-22 95.9
MS.gene28631.t1 AT5G44840 28.608 395 223 15 45 421 26 379 1.81e-21 96.3
MS.gene28631.t1 AT3G26610 26.807 332 180 11 44 353 68 358 2.32e-21 97.1
MS.gene28631.t1 AT1G56710 29.503 322 182 10 36 341 41 333 3.52e-21 95.9
MS.gene28631.t1 AT1G80170 26.087 437 258 15 38 453 45 437 7.16e-21 95.1
MS.gene28631.t1 AT4G32375 33.632 223 124 7 135 351 6 210 1.73e-20 94.0
MS.gene28631.t1 AT2G43880 27.654 405 235 15 42 429 30 393 1.78e-20 93.6
MS.gene28631.t1 AT2G43880 30.128 312 169 11 42 342 30 303 1.02e-19 90.5
MS.gene28631.t1 AT5G44830 32.159 227 121 7 156 377 75 273 1.32e-19 90.1
MS.gene28631.t1 AT2G26620 25.058 431 240 15 38 441 26 400 1.39e-18 87.8
MS.gene28631.t1 AT2G15470 24.769 432 242 15 38 441 26 402 7.19e-18 85.9
MS.gene28631.t1 AT2G43860 27.889 398 242 14 40 426 30 393 7.45e-18 85.9
MS.gene28631.t1 AT2G15450 24.769 432 242 15 38 441 26 402 2.18e-17 84.3
MS.gene28631.t1 AT1G80140 29.362 235 144 6 155 385 69 285 3.11e-17 83.2
MS.gene28631.t1 AT1G48100 26.036 338 207 9 45 368 82 390 4.90e-17 84.0
MS.gene28631.t1 AT2G15460 28.529 333 185 12 38 355 26 320 5.77e-17 83.2
MS.gene28631.t1 AT4G32370 31.225 253 148 8 124 370 110 342 7.16e-17 82.0
MS.gene28631.t1 AT1G17150 25.208 361 218 10 39 385 29 351 9.80e-17 82.4
MS.gene28631.t1 AT2G43870 26.124 356 215 11 41 385 19 337 1.60e-16 81.6
MS.gene28631.t1 AT4G32380 32.579 221 122 8 135 347 105 306 1.64e-16 81.6
MS.gene28631.t1 AT1G02790 25.281 356 208 12 40 382 49 359 2.31e-16 81.3
MS.gene28631.t1 AT4G13760 23.963 434 243 16 38 441 26 402 5.30e-16 80.1
MS.gene28631.t1 AT1G65570 26.463 393 214 17 42 418 30 363 6.32e-16 79.7
MS.gene28631.t1 AT3G59850 26.062 353 220 10 41 385 21 340 6.65e-16 79.7
MS.gene28631.t1 AT1G43080 23.953 430 252 15 38 443 26 404 6.96e-16 79.7
MS.gene28631.t1 AT3G59850 26.062 353 220 10 41 385 65 384 1.10e-15 79.3
MS.gene28631.t1 AT1G78400 28.324 346 199 13 45 380 37 343 1.76e-15 78.6
MS.gene28631.t1 AT1G05650 24.561 399 250 13 45 429 30 391 1.83e-15 78.6
MS.gene28631.t1 AT1G43100 25.926 351 217 11 38 377 26 344 2.60e-15 78.2
MS.gene28631.t1 AT3G14040 28.477 302 181 10 145 429 154 437 2.71e-15 78.2
MS.gene28631.t1 AT1G80170 26.910 301 166 12 38 320 45 309 3.83e-15 76.6
MS.gene28631.t1 AT3G07970 27.917 240 152 7 145 377 157 382 7.56e-15 77.0
MS.gene28631.t1 AT2G40310 25.296 423 251 16 38 441 26 402 9.04e-15 76.3
MS.gene28631.t1 AT3G07850 28.146 302 182 10 145 429 153 436 9.40e-15 76.6
MS.gene28631.t1 AT1G43090 25.926 351 217 11 38 377 26 344 1.07e-14 76.3
MS.gene28631.t1 AT1G02460 27.302 315 185 8 44 341 90 377 1.17e-14 76.6
MS.gene28631.t1 AT2G43890 27.018 285 181 10 156 429 123 391 4.31e-14 74.3
MS.gene28631.t1 AT5G48140 29.268 205 122 7 156 351 113 303 3.10e-13 71.6
MS.gene28631.t1 AT1G05660 25.000 284 189 9 156 429 122 391 4.18e-13 71.2
MS.gene28631.t1 AT4G18180 26.769 325 177 12 35 341 31 312 1.01e-12 70.1
MS.gene28631.t1 AT4G01890 25.559 313 191 8 45 341 67 353 3.04e-12 68.9
MS.gene28631.t1 AT5G39910 33.537 164 90 4 178 336 145 294 2.80e-11 65.5
MS.gene28631.t1 AT3G07830 29.268 205 122 7 156 351 114 304 4.06e-11 65.1

Find 124 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGTTTGTGGATGTGTTTC+TGG 0.115560 7.2:-4762524 MS.gene28631:intron
CCTTCTTGAATTCTCCATTT+TGG 0.170024 7.2:-4761263 MS.gene28631:CDS
GTTGATCCTCTACCGTCTTA+TGG 0.178108 7.2:-4761572 MS.gene28631:CDS
TCAATTACTGGTAAAGCATT+TGG 0.251176 7.2:+4760542 None:intergenic
AGTGTTAGTATTACTGAATT+TGG 0.259964 7.2:-4762415 MS.gene28631:CDS
GACAAGGATGCAATAATTCT+TGG 0.291288 7.2:-4762232 MS.gene28631:CDS
TTGACTGATGTTATCATAAC+AGG 0.294659 7.2:-4761494 MS.gene28631:intron
CTTTGTCTGAGAAAGAATTT+AGG 0.310259 7.2:+4762335 None:intergenic
GGATTATACGCGTCCGCATT+TGG 0.311948 7.2:-4761328 MS.gene28631:CDS
AAAAGTGGGTGGGATGAATA+TGG 0.312527 7.2:-4760854 MS.gene28631:CDS
TTGATCCTCTACCGTCTTAT+GGG 0.316517 7.2:-4761571 MS.gene28631:CDS
TGGGCGAGGAAGGGAGTTGC+CGG 0.323326 7.2:-4761552 MS.gene28631:CDS
TTTGATTATTTGAACTTTGT+TGG 0.340114 7.2:+4760273 None:intergenic
CAATTACTGGTAAAGCATTT+GGG 0.348238 7.2:+4760543 None:intergenic
ACAGGATGAATAGTCCAAAA+TGG 0.359971 7.2:+4761249 None:intergenic
TCGATGGTCAAGGGAGTATC+TGG 0.373114 7.2:-4761377 MS.gene28631:CDS
CTAACATAACCACCTCTTCC+AGG 0.377501 7.2:+4760659 None:intergenic
GTATCTGGTGGAGCATGTTT+AGG 0.384496 7.2:-4761362 MS.gene28631:CDS
TTGAGCGGCTCACAAGCTTC+AGG 0.402004 7.2:+4760347 None:intergenic
CTAATGTTGATATTGCTATT+CGG 0.402400 7.2:-4760607 MS.gene28631:CDS
TCATTAGTCACCTAACTTTG+TGG 0.403845 7.2:-4762258 MS.gene28631:CDS
ACAAGCGCTGGGATAGCTAT+TGG 0.404164 7.2:-4760770 MS.gene28631:CDS
CATTGTTCTGTTGTAGCTCA+TGG 0.404927 7.2:-4762495 MS.gene28631:CDS
ATTGTCATCCACAGGCTTGT+TGG 0.411333 7.2:-4760803 MS.gene28631:CDS
GTAGAATTGATGAATTCAAC+TGG 0.411616 7.2:-4761306 MS.gene28631:CDS
CCTTGTCCAACCACAAAGTT+AGG 0.414110 7.2:+4762248 None:intergenic
CCAGCCGGTCGGTGGTTAAC+CGG 0.415110 7.2:-4762292 MS.gene28631:CDS
TGGAACTGCTCTAACATTAG+AGG 0.419445 7.2:-4760389 MS.gene28631:CDS
ACAAAAGCAGGTCTTATAGA+AGG 0.421027 7.2:-4760482 MS.gene28631:CDS
AGAGAAGTACTTACTGTAGA+AGG 0.427964 7.2:+4763002 None:intergenic
GAGGTGCTTGGTTTATGTCT+TGG 0.441042 7.2:-4760247 MS.gene28631:CDS
ATTCGGTTCACCGGCTCATA+TGG 0.441323 7.2:-4760590 MS.gene28631:CDS
GGTCTTATAGAAGGTATAGA+AGG 0.444070 7.2:-4760473 MS.gene28631:CDS
AGGCATAGGAGTCTCATCTA+TGG 0.451581 7.2:-4761524 MS.gene28631:CDS
GGATCGATCCCATCTGTGTT+TGG 0.456837 7.2:+4761171 None:intergenic
TTTGGGTCATAAGCATCATC+TGG 0.470084 7.2:+4760560 None:intergenic
GTAACTTGGCTGCAATATAC+AGG 0.471812 7.2:+4761231 None:intergenic
TAACAGTCTGAACAATGGTC+GGG 0.472691 7.2:+4760311 None:intergenic
GCCAAGCTCTTTGTTCCAGC+CGG 0.474022 7.2:-4762307 MS.gene28631:CDS
ATTACTGAATTTGGTGCAGT+TGG 0.480186 7.2:-4762406 MS.gene28631:CDS
CATGTTTAGGAACAAAACTC+TGG 0.480469 7.2:-4761349 MS.gene28631:CDS
GACGGTAGAGGATCAACAAC+CGG 0.481210 7.2:+4761578 None:intergenic
CTAAATTCTTTCTCAGACAA+AGG 0.484746 7.2:-4762334 MS.gene28631:CDS
GAAGGGAGTTGCCGGGTGGA+AGG 0.488259 7.2:-4761544 MS.gene28631:CDS
CCGGTTAACCACCGACCGGC+TGG 0.489226 7.2:+4762292 None:intergenic
GTGGATGACAATATTTGTGC+TGG 0.490654 7.2:+4760814 None:intergenic
GATATTGCTATTCGGTTCAC+CGG 0.496454 7.2:-4760599 MS.gene28631:CDS
AGACAAACTTGGACAAAGTT+AGG 0.499888 7.2:-4762444 MS.gene28631:CDS
AGTTGCCGGGTGGAAGGCAT+AGG 0.501563 7.2:-4761538 MS.gene28631:CDS
ATTACCATCGAGGATGTGAT+AGG 0.509172 7.2:-4760515 MS.gene28631:CDS
AGCTCTTTGTTCCAGCCGGT+CGG 0.511797 7.2:-4762303 MS.gene28631:CDS
ATGTGAGCTCAAACTATCCA+TGG 0.515349 7.2:-4760409 MS.gene28631:CDS
ATAGTTTGAGCTCACATTGA+GGG 0.517108 7.2:+4760415 None:intergenic
CTGTCTAAATGAAGGTAATG+AGG 0.517320 7.2:-4761406 MS.gene28631:intron
AACACAGATGGGATCGATCC+AGG 0.522022 7.2:-4761168 MS.gene28631:intron
CCTAACTTTGTGGTTGGACA+AGG 0.522258 7.2:-4762248 MS.gene28631:CDS
ACCGGCTGGAACAAAGAGCT+TGG 0.523292 7.2:+4762306 None:intergenic
GAATTTGGTGCAGTTGGCGA+TGG 0.523932 7.2:-4762400 MS.gene28631:CDS
GATGAATATGGAATTGCATT+CGG 0.527071 7.2:-4760842 MS.gene28631:CDS
TACCGTCTTATGGGCGAGGA+AGG 0.532249 7.2:-4761562 MS.gene28631:CDS
TGTTACAGAACTCTGAGGAT+TGG 0.532343 7.2:-4761601 MS.gene28631:intron
TAGTCACCTAACTTTGTGGT+TGG 0.536096 7.2:-4762254 MS.gene28631:CDS
ATAATCAAAACAGAGGTGCT+TGG 0.539395 7.2:-4760259 MS.gene28631:CDS
ATAACAGTCTGAACAATGGT+CGG 0.539421 7.2:+4760310 None:intergenic
TGAAGCTTGTGAGCCGCTCA+AGG 0.539672 7.2:-4760345 MS.gene28631:CDS
ATCAGAATAAAGACTTCACC+TGG 0.545749 7.2:-4760677 MS.gene28631:CDS
AGCTATTGGAAGTGAGATGT+CGG 0.547942 7.2:-4760756 MS.gene28631:CDS
TCTTTGTTCCAGCCGGTCGG+TGG 0.548285 7.2:-4762300 MS.gene28631:CDS
GGTGAAAAGATCACAAAAGC+AGG 0.549739 7.2:-4760494 MS.gene28631:CDS
ACAGAACTCTGAGGATTGGC+CGG 0.551846 7.2:-4761597 MS.gene28631:intron
GAAGACTGTTATATAAGCAC+TGG 0.552223 7.2:-4760896 MS.gene28631:CDS
ATAAAGACTTCACCTGGAAG+AGG 0.563269 7.2:-4760671 MS.gene28631:CDS
TGACATTCTGAACTGTAACT+TGG 0.563358 7.2:+4761217 None:intergenic
CTTGATTCACCAAACACAGA+TGG 0.565423 7.2:-4761180 MS.gene28631:CDS
CCTCTACCGTCTTATGGGCG+AGG 0.565881 7.2:-4761566 MS.gene28631:CDS
TGTCTAAATGAAGGTAATGA+GGG 0.566512 7.2:-4761405 MS.gene28631:intron
TCAGTAATACTAACACTATG+AGG 0.566786 7.2:+4762421 None:intergenic
GCTATTGGAAGTGAGATGTC+GGG 0.570462 7.2:-4760755 MS.gene28631:CDS
TCCCTTCCTCGCCCATAAGA+CGG 0.570713 7.2:+4761560 None:intergenic
TTGATTCACCAAACACAGAT+GGG 0.577250 7.2:-4761179 MS.gene28631:CDS
CTATGTCACTAACATGACCT+TGG 0.580777 7.2:-4760630 MS.gene28631:CDS
AGCAATATCAACATTAGCCA+AGG 0.580954 7.2:+4760613 None:intergenic
GAGGGGATTATCGATGGTCA+AGG 0.582272 7.2:-4761387 MS.gene28631:CDS
TTCACCTATCACATCCTCGA+TGG 0.584469 7.2:+4760511 None:intergenic
ACCGTCTTATGGGCGAGGAA+GGG 0.586166 7.2:-4761561 MS.gene28631:CDS
AACAGTCTGAACAATGGTCG+GGG 0.587281 7.2:+4760312 None:intergenic
CTAATGTTAGAGCAGTTCCA+TGG 0.587596 7.2:+4760392 None:intergenic
GATCTGATTGCCATCAAAAG+TGG 0.587760 7.2:-4760869 MS.gene28631:CDS
CCTCGCCCATAAGACGGTAG+AGG 0.588095 7.2:+4761566 None:intergenic
AATTCTTTCTCAGACAAAGG+TGG 0.590185 7.2:-4762331 MS.gene28631:CDS
GCACAAATATTGTCATCCAC+AGG 0.593749 7.2:-4760811 MS.gene28631:CDS
TGGATGATCACCATATGAGC+CGG 0.594613 7.2:+4760580 None:intergenic
GATAGTTTGAGCTCACATTG+AGG 0.598581 7.2:+4760414 None:intergenic
GGGCGAGGAAGGGAGTTGCC+GGG 0.600910 7.2:-4761551 MS.gene28631:CDS
TTCATCAATTCTACCAAATG+CGG 0.602447 7.2:+4761315 None:intergenic
AATTTGGTGCAGTTGGCGAT+GGG 0.606525 7.2:-4762399 MS.gene28631:CDS
AAGACTTCACCTGGAAGAGG+TGG 0.607219 7.2:-4760668 MS.gene28631:CDS
ACTAATGAGATCAAAACTAC+CGG 0.609390 7.2:+4762273 None:intergenic
CCAAAATGGAGAATTCAAGA+AGG 0.611948 7.2:+4761263 None:intergenic
GGGAATATCCTCTCCTTGAG+CGG 0.613736 7.2:+4760332 None:intergenic
CATTAGAGGATACTCTGACA+TGG 0.617874 7.2:-4760375 MS.gene28631:CDS
CTTGTGAGCCGCTCAAGGAG+AGG 0.622308 7.2:-4760340 MS.gene28631:CDS
AGGGGATTATCGATGGTCAA+GGG 0.623565 7.2:-4761386 MS.gene28631:CDS
TGATTGCCATCAAAAGTGGG+TGG 0.623844 7.2:-4760865 MS.gene28631:CDS
GGTAATGAGGGGATTATCGA+TGG 0.626496 7.2:-4761393 MS.gene28631:CDS
ATGGTCAAGGGAGTATCTGG+TGG 0.628542 7.2:-4761374 MS.gene28631:CDS
TTCCTTGTTACAGAACTCTG+AGG 0.629942 7.2:-4761606 MS.gene28631:intron
ACTATGCAAAGAGACAAACT+TGG 0.634184 7.2:-4762455 MS.gene28631:CDS
AATAATAACAGTCTGAACAA+TGG 0.636024 7.2:+4760306 None:intergenic
CGAGGAAGGGAGTTGCCGGG+TGG 0.637269 7.2:-4761548 MS.gene28631:CDS
GTTGTAGCTCATGGAAAGTG+TGG 0.642980 7.2:-4762486 MS.gene28631:CDS
ATCTGATTGCCATCAAAAGT+GGG 0.643151 7.2:-4760868 MS.gene28631:CDS
TGGATGACAATATTTGTGCT+GGG 0.646547 7.2:+4760815 None:intergenic
GTCTAAATGAAGGTAATGAG+GGG 0.650722 7.2:-4761404 MS.gene28631:intron
TAGAATTGATGAATTCAACT+GGG 0.650806 7.2:-4761305 MS.gene28631:CDS
AGACTCCTATGCCTTCCACC+CGG 0.668681 7.2:+4761533 None:intergenic
ACTACCGGTTAACCACCGAC+CGG 0.670891 7.2:+4762288 None:intergenic
GATTGCCATCAAAAGTGGGT+GGG 0.686526 7.2:-4760864 MS.gene28631:CDS
TGGTGTATCAGATGTTCGTG+CGG 0.686998 7.2:-4760732 MS.gene28631:CDS
TCTGTGTTTGGTGAATCAAG+AGG 0.690353 7.2:+4761183 None:intergenic
AGTTCAAATAATCAAAACAG+AGG 0.693684 7.2:-4760266 MS.gene28631:CDS
AATTGAAAAGATTACCATCG+AGG 0.698986 7.2:-4760525 MS.gene28631:CDS
TTGGTGAATCAAGAGGAGCA+AGG 0.733285 7.2:+4761190 None:intergenic
ATTGGAAGTGAGATGTCGGG+TGG 0.741703 7.2:-4760752 MS.gene28631:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTATTAATTTTTCAAAATT+GGG - chr7.2:4761225-4761244 MS.gene28631:CDS 10.0%
!!! GAGTATTAATTTTTCAAAAT+TGG - chr7.2:4761224-4761243 MS.gene28631:CDS 15.0%
!!! GTATTAATTTTTCAAAATTG+GGG - chr7.2:4761226-4761245 MS.gene28631:CDS 15.0%
!!! TATTTTAAATGACTTGATTA+TGG + chr7.2:4761550-4761569 None:intergenic 15.0%
!!! TTCACTCTTTAAAAATAATT+TGG - chr7.2:4761060-4761079 MS.gene28631:intron 15.0%
!!! TTTAGTTGATAACTATATAT+AGG - chr7.2:4761136-4761155 MS.gene28631:intron 15.0%
!! AAATGAGATATGTTAGTAAT+AGG + chr7.2:4762124-4762143 None:intergenic 20.0%
!! AATGAGATATGTTAGTAATA+GGG + chr7.2:4762123-4762142 None:intergenic 20.0%
!! AATGTAAAGTGAATAATGTT+TGG + chr7.2:4761513-4761532 None:intergenic 20.0%
!! AATTTGCACTTAACAAAAAA+TGG - chr7.2:4760445-4760464 MS.gene28631:CDS 20.0%
!! ATTTGCACTTAACAAAAAAT+GGG - chr7.2:4760446-4760465 MS.gene28631:CDS 20.0%
!! CAAATTTGTATATTATGCAT+TGG - chr7.2:4761272-4761291 MS.gene28631:CDS 20.0%
!! CAATGCATAATATACAAATT+TGG + chr7.2:4761274-4761293 None:intergenic 20.0%
!! GAAAATTATGAAATTGTAGT+AGG + chr7.2:4760556-4760575 None:intergenic 20.0%
!! TTTGATTATTTGAACTTTGT+TGG + chr7.2:4762985-4763004 None:intergenic 20.0%
!!! ATGGATTAGTTTACTATAAA+AGG - chr7.2:4761172-4761191 MS.gene28631:CDS 20.0%
!!! TAATACTCAATCCTTTTTTT+GGG + chr7.2:4761212-4761231 None:intergenic 20.0%
!!! TTAATACTCAATCCTTTTTT+TGG + chr7.2:4761213-4761232 None:intergenic 20.0%
!!! TTATCCTTTTCATTTTCATA+TGG + chr7.2:4762200-4762219 None:intergenic 20.0%
! AATAATAACAGTCTGAACAA+TGG + chr7.2:4762952-4762971 None:intergenic 25.0%
! AATTTGATAGAATCCAAAGT+TGG - chr7.2:4760650-4760669 MS.gene28631:CDS 25.0%
! AGTGTTAGTATTACTGAATT+TGG - chr7.2:4760840-4760859 MS.gene28631:CDS 25.0%
! AGTTCAAATAATCAAAACAG+AGG - chr7.2:4762989-4763008 MS.gene28631:intron 25.0%
! ATTTGATAGAATCCAAAGTT+GGG - chr7.2:4760651-4760670 MS.gene28631:CDS 25.0%
! TAACTTTCTTATCAATGTAG+TGG - chr7.2:4761105-4761124 MS.gene28631:intron 25.0%
! TAGAATTGATGAATTCAACT+GGG - chr7.2:4761950-4761969 MS.gene28631:intron 25.0%
! TGAAAATGAAAAGGATAACA+AGG - chr7.2:4762202-4762221 MS.gene28631:intron 25.0%
!! ATGGTAATCTTTTCAATTAC+TGG + chr7.2:4762728-4762747 None:intergenic 25.0%
!! CTAATGTTGATATTGCTATT+CGG - chr7.2:4762648-4762667 MS.gene28631:intron 25.0%
!!! ATAATTTGGAATGTCACTTT+CGG - chr7.2:4761074-4761093 MS.gene28631:intron 25.0%
!!! TATAGGTAATTTCTGAGATA+TGG - chr7.2:4761153-4761172 MS.gene28631:intron 25.0%
!!! TGTGATTGTTTTTTCAGTTT+TGG - chr7.2:4760470-4760489 MS.gene28631:CDS 25.0%
AATTGAAAAGATTACCATCG+AGG - chr7.2:4762730-4762749 MS.gene28631:intron 30.0%
ACTAATGAGATCAAAACTAC+CGG + chr7.2:4760985-4761004 None:intergenic 30.0%
CTAAATTCTTTCTCAGACAA+AGG - chr7.2:4760921-4760940 MS.gene28631:CDS 30.0%
CTTTGTCTGAGAAAGAATTT+AGG + chr7.2:4760923-4760942 None:intergenic 30.0%
GAGTATTTGTACCCAAAAAA+AGG - chr7.2:4761198-4761217 MS.gene28631:CDS 30.0%
GAGTCCATATGAAAATGAAA+AGG - chr7.2:4762193-4762212 MS.gene28631:intron 30.0%
GATGAATATGGAATTGCATT+CGG - chr7.2:4762413-4762432 MS.gene28631:CDS 30.0%
GTAGAATTGATGAATTCAAC+TGG - chr7.2:4761949-4761968 MS.gene28631:intron 30.0%
TCAGTAATACTAACACTATG+AGG + chr7.2:4760837-4760856 None:intergenic 30.0%
TCTAACTTGAAGCTAGAATT+CGG - chr7.2:4761419-4761438 MS.gene28631:intron 30.0%
TGTCTAAATGAAGGTAATGA+GGG - chr7.2:4761850-4761869 MS.gene28631:intron 30.0%
TTCATCAATTCTACCAAATG+CGG + chr7.2:4761943-4761962 None:intergenic 30.0%
TTCTATTGCTGTCTAAATGA+AGG - chr7.2:4761841-4761860 MS.gene28631:intron 30.0%
TTGACTGATGTTATCATAAC+AGG - chr7.2:4761761-4761780 MS.gene28631:intron 30.0%
! ACGCTACAAATCAATTTTAG+AGG + chr7.2:4761453-4761472 None:intergenic 30.0%
! CAATTACTGGTAAAGCATTT+GGG + chr7.2:4762715-4762734 None:intergenic 30.0%
! CGCTTTTATGATTCATATAC+TGG - chr7.2:4762554-4762573 MS.gene28631:intron 30.0%
! TCAATTACTGGTAAAGCATT+TGG + chr7.2:4762716-4762735 None:intergenic 30.0%
! TCTTTAAGTTTGTGTGCATT+TGG - chr7.2:4761295-4761314 MS.gene28631:CDS 30.0%
!! AGAGTTGATTTTGACATGTT+TGG - chr7.2:4761357-4761376 MS.gene28631:CDS 30.0%
AAATATTCCGCAAATAACCG+TGG - chr7.2:4761794-4761813 MS.gene28631:intron 35.0%
AATTCTTTCTCAGACAAAGG+TGG - chr7.2:4760924-4760943 MS.gene28631:intron 35.0%
ACACAGAACATGACATTCTA+GGG + chr7.2:4762261-4762280 None:intergenic 35.0%
ACAGGATGAATAGTCCAAAA+TGG + chr7.2:4762009-4762028 None:intergenic 35.0%
ACTATGCAAAGAGACAAACT+TGG - chr7.2:4760800-4760819 MS.gene28631:CDS 35.0%
AGACAAACTTGGACAAAGTT+AGG - chr7.2:4760811-4760830 MS.gene28631:CDS 35.0%
AGCAATATCAACATTAGCCA+AGG + chr7.2:4762645-4762664 None:intergenic 35.0%
ATAACAGTCTGAACAATGGT+CGG + chr7.2:4762948-4762967 None:intergenic 35.0%
ATAGTTTGAGCTCACATTGA+GGG + chr7.2:4762843-4762862 None:intergenic 35.0%
ATCAGAATAAAGACTTCACC+TGG - chr7.2:4762578-4762597 MS.gene28631:intron 35.0%
ATCTGATTGCCATCAAAAGT+GGG - chr7.2:4762387-4762406 MS.gene28631:CDS 35.0%
CATGTTTAGGAACAAAACTC+TGG - chr7.2:4761906-4761925 MS.gene28631:intron 35.0%
CCAAAATGGAGAATTCAAGA+AGG + chr7.2:4761995-4762014 None:intergenic 35.0%
CTGATGTTATCATAACAGGT+TGG - chr7.2:4761765-4761784 MS.gene28631:intron 35.0%
CTGTCTAAATGAAGGTAATG+AGG - chr7.2:4761849-4761868 MS.gene28631:intron 35.0%
CTTTCTTATCAATGTAGTGG+TGG - chr7.2:4761108-4761127 MS.gene28631:intron 35.0%
GAAGACTGTTATATAAGCAC+TGG - chr7.2:4762359-4762378 MS.gene28631:CDS 35.0%
GACAAGGATGCAATAATTCT+TGG - chr7.2:4761023-4761042 MS.gene28631:intron 35.0%
GTCTAAATGAAGGTAATGAG+GGG - chr7.2:4761851-4761870 MS.gene28631:intron 35.0%
TCATTAGTCACCTAACTTTG+TGG - chr7.2:4760997-4761016 MS.gene28631:intron 35.0%
TGACATTCTGAACTGTAACT+TGG + chr7.2:4762041-4762060 None:intergenic 35.0%
TGCATCAATGTTGTTGTGAA+TGG - chr7.2:4760291-4760310 MS.gene28631:CDS 35.0%
TGGATGACAATATTTGTGCT+GGG + chr7.2:4762443-4762462 None:intergenic 35.0%
TTGATTCACCAAACACAGAT+GGG - chr7.2:4762076-4762095 MS.gene28631:intron 35.0%
! ACAAAAGCAGGTCTTATAGA+AGG - chr7.2:4762773-4762792 MS.gene28631:intron 35.0%
! CCTTCTTGAATTCTCCATTT+TGG - chr7.2:4761992-4762011 MS.gene28631:intron 35.0%
! CTTTTCTGTTTTGCAGTTTG+TGG - chr7.2:4760719-4760738 MS.gene28631:CDS 35.0%
! GGTCTTATAGAAGGTATAGA+AGG - chr7.2:4762782-4762801 MS.gene28631:intron 35.0%
!! AGAGAAGTACTTACTGTAGA+AGG + chr7.2:4760256-4760275 None:intergenic 35.0%
!! ATAATCAAAACAGAGGTGCT+TGG - chr7.2:4762996-4763015 MS.gene28631:intron 35.0%
!! ATTACTGAATTTGGTGCAGT+TGG - chr7.2:4760849-4760868 MS.gene28631:CDS 35.0%
!!! ACTTGTGCTGTTTTAGTTCA+TGG - chr7.2:4760620-4760639 MS.gene28631:CDS 35.0%
AAAAGTGGGTGGGATGAATA+TGG - chr7.2:4762401-4762420 MS.gene28631:CDS 40.0%
AACTTTGCCTCCTTCAAAAG+TGG + chr7.2:4761323-4761342 None:intergenic 40.0%
ACCAACATGTATAGAGACCA+CGG + chr7.2:4761814-4761833 None:intergenic 40.0%
ACTTTGCCTCCTTCAAAAGT+GGG + chr7.2:4761322-4761341 None:intergenic 40.0%
AGCTATTGGAAGTGAGATGT+CGG - chr7.2:4762499-4762518 MS.gene28631:CDS 40.0%
ATAAAGACTTCACCTGGAAG+AGG - chr7.2:4762584-4762603 MS.gene28631:intron 40.0%
ATAGAGACCACGGTTATTTG+CGG + chr7.2:4761804-4761823 None:intergenic 40.0%
ATCCTCAGAGTTCTGTAACA+AGG + chr7.2:4761654-4761673 None:intergenic 40.0%
ATGTGAGCTCAAACTATCCA+TGG - chr7.2:4762846-4762865 MS.gene28631:intron 40.0%
ATTACCATCGAGGATGTGAT+AGG - chr7.2:4762740-4762759 MS.gene28631:intron 40.0%
CACACAGAACATGACATTCT+AGG + chr7.2:4762262-4762281 None:intergenic 40.0%
CACAGAACATGACATTCTAG+GGG + chr7.2:4762260-4762279 None:intergenic 40.0%
CATTAGAGGATACTCTGACA+TGG - chr7.2:4762880-4762899 MS.gene28631:intron 40.0%
CATTGTTCTGTTGTAGCTCA+TGG - chr7.2:4760760-4760779 MS.gene28631:CDS 40.0%
CTAATGTTAGAGCAGTTCCA+TGG + chr7.2:4762866-4762885 None:intergenic 40.0%
CTATGTCACTAACATGACCT+TGG - chr7.2:4762625-4762644 MS.gene28631:intron 40.0%
CTTGATTCACCAAACACAGA+TGG - chr7.2:4762075-4762094 MS.gene28631:intron 40.0%
GAAGGTAAACGTGAGAATCT+AGG + chr7.2:4762303-4762322 None:intergenic 40.0%
GATAGTTTGAGCTCACATTG+AGG + chr7.2:4762844-4762863 None:intergenic 40.0%
GATCTGATTGCCATCAAAAG+TGG - chr7.2:4762386-4762405 MS.gene28631:CDS 40.0%
GCACAAATATTGTCATCCAC+AGG - chr7.2:4762444-4762463 MS.gene28631:CDS 40.0%
GGTGAAAAGATCACAAAAGC+AGG - chr7.2:4762761-4762780 MS.gene28631:intron 40.0%
GTAACTTGGCTGCAATATAC+AGG + chr7.2:4762027-4762046 None:intergenic 40.0%
GTGGATGACAATATTTGTGC+TGG + chr7.2:4762444-4762463 None:intergenic 40.0%
TAACAGTCTGAACAATGGTC+GGG + chr7.2:4762947-4762966 None:intergenic 40.0%
TAATAGGGAGAAAGTTCACC+TGG + chr7.2:4762108-4762127 None:intergenic 40.0%
TAGTCACCTAACTTTGTGGT+TGG - chr7.2:4761001-4761020 MS.gene28631:intron 40.0%
TGGAACTGCTCTAACATTAG+AGG - chr7.2:4762866-4762885 MS.gene28631:intron 40.0%
TTCCTTGTTACAGAACTCTG+AGG - chr7.2:4761649-4761668 MS.gene28631:intron 40.0%
TTGATCCTCTACCGTCTTAT+GGG - chr7.2:4761684-4761703 MS.gene28631:intron 40.0%
TTTGGGTCATAAGCATCATC+TGG + chr7.2:4762698-4762717 None:intergenic 40.0%
! AGAGTCTGGACACATTTTGA+AGG + chr7.2:4762321-4762340 None:intergenic 40.0%
! GATATTGCTATTCGGTTCAC+CGG - chr7.2:4762656-4762675 MS.gene28631:intron 40.0%
! GCAGATTAGAAGCATGTGTT+TGG + chr7.2:4761591-4761610 None:intergenic 40.0%
! TCTGTGTTTGGTGAATCAAG+AGG + chr7.2:4762075-4762094 None:intergenic 40.0%
! TGTTACAGAACTCTGAGGAT+TGG - chr7.2:4761654-4761673 MS.gene28631:intron 40.0%
AACAGTCTGAACAATGGTCG+GGG + chr7.2:4762946-4762965 None:intergenic 45.0%
ACCGTGGTCTCTATACATGT+TGG - chr7.2:4761810-4761829 MS.gene28631:intron 45.0%
AGGCATAGGAGTCTCATCTA+TGG - chr7.2:4761731-4761750 MS.gene28631:intron 45.0%
AGGGGATTATCGATGGTCAA+GGG - chr7.2:4761869-4761888 MS.gene28631:intron 45.0%
AGTGCTTGTGGTTTCACTGA+TGG - chr7.2:4760682-4760701 MS.gene28631:CDS 45.0%
ATTGTCATCCACAGGCTTGT+TGG - chr7.2:4762452-4762471 MS.gene28631:CDS 45.0%
CACTAGCAACTTCCCAACTT+TGG + chr7.2:4760666-4760685 None:intergenic 45.0%
CCTAACTTTGTGGTTGGACA+AGG - chr7.2:4761007-4761026 MS.gene28631:intron 45.0%
CCTTGTCCAACCACAAAGTT+AGG + chr7.2:4761010-4761029 None:intergenic 45.0%
CTAACATAACCACCTCTTCC+AGG + chr7.2:4762599-4762618 None:intergenic 45.0%
GAAAAACTCACACAAGCGCT+GGG - chr7.2:4762474-4762493 MS.gene28631:CDS 45.0%
GATTGCCATCAAAAGTGGGT+GGG - chr7.2:4762391-4762410 MS.gene28631:CDS 45.0%
GCAGTTTGTGGATGTGTTTC+TGG - chr7.2:4760731-4760750 MS.gene28631:CDS 45.0%
GCTATTGGAAGTGAGATGTC+GGG - chr7.2:4762500-4762519 MS.gene28631:CDS 45.0%
GGTAATGAGGGGATTATCGA+TGG - chr7.2:4761862-4761881 MS.gene28631:intron 45.0%
GTATCTGGTGGAGCATGTTT+AGG - chr7.2:4761893-4761912 MS.gene28631:intron 45.0%
GTTGATCCTCTACCGTCTTA+TGG - chr7.2:4761683-4761702 MS.gene28631:intron 45.0%
GTTGTAGCTCATGGAAAGTG+TGG - chr7.2:4760769-4760788 MS.gene28631:CDS 45.0%
TGATTGCCATCAAAAGTGGG+TGG - chr7.2:4762390-4762409 MS.gene28631:CDS 45.0%
TGGATGATCACCATATGAGC+CGG + chr7.2:4762678-4762697 None:intergenic 45.0%
TGGTGTATCAGATGTTCGTG+CGG - chr7.2:4762523-4762542 MS.gene28631:CDS 45.0%
TTCACCTATCACATCCTCGA+TGG + chr7.2:4762747-4762766 None:intergenic 45.0%
TTGGTGAATCAAGAGGAGCA+AGG + chr7.2:4762068-4762087 None:intergenic 45.0%
! GAGGTGCTTGGTTTATGTCT+TGG - chr7.2:4763008-4763027 MS.gene28631:intron 45.0%
! GAGTTTTTCCAACAAGCCTG+TGG + chr7.2:4762463-4762482 None:intergenic 45.0%
! GGAGGCAAAGTTGATTTCAG+AGG - chr7.2:4761331-4761350 MS.gene28631:CDS 45.0%
!! AATTTGGTGCAGTTGGCGAT+GGG - chr7.2:4760856-4760875 MS.gene28631:CDS 45.0%
!! GCATTTGGTCCCACTTTTGA+AGG - chr7.2:4761310-4761329 MS.gene28631:CDS 45.0%
!! TTCATCCCACCCACTTTTGA+TGG + chr7.2:4762399-4762418 None:intergenic 45.0%
!! TTTGGTCCCACTTTTGAAGG+AGG - chr7.2:4761313-4761332 MS.gene28631:CDS 45.0%
AACACAGATGGGATCGATCC+AGG - chr7.2:4762087-4762106 MS.gene28631:intron 50.0%
AAGACTTCACCTGGAAGAGG+TGG - chr7.2:4762587-4762606 MS.gene28631:intron 50.0%
ATTGGAAGTGAGATGTCGGG+TGG - chr7.2:4762503-4762522 MS.gene28631:CDS 50.0%
CACACGTCATCAGAAGAGTC+TGG + chr7.2:4762335-4762354 None:intergenic 50.0%
GACGGTAGAGGATCAACAAC+CGG + chr7.2:4761680-4761699 None:intergenic 50.0%
GAGGGGATTATCGATGGTCA+AGG - chr7.2:4761868-4761887 MS.gene28631:intron 50.0%
GGAAAAACTCACACAAGCGC+TGG - chr7.2:4762473-4762492 MS.gene28631:CDS 50.0%
GGATCGATCCCATCTGTGTT+TGG + chr7.2:4762087-4762106 None:intergenic 50.0%
GGATTATACGCGTCCGCATT+TGG - chr7.2:4761927-4761946 MS.gene28631:intron 50.0%
GGGAATATCCTCTCCTTGAG+CGG + chr7.2:4762926-4762945 None:intergenic 50.0%
TGGGAAGTTGCTAGTGCTTG+TGG - chr7.2:4760670-4760689 MS.gene28631:CDS 50.0%
! ACAGAACTCTGAGGATTGGC+CGG - chr7.2:4761658-4761677 MS.gene28631:intron 50.0%
!! ACAAGCGCTGGGATAGCTAT+TGG - chr7.2:4762485-4762504 MS.gene28631:CDS 50.0%
!! ATGGTCAAGGGAGTATCTGG+TGG - chr7.2:4761881-4761900 MS.gene28631:intron 50.0%
!! ATTCGGTTCACCGGCTCATA+TGG - chr7.2:4762665-4762684 MS.gene28631:intron 50.0%
!! GAATTTGGTGCAGTTGGCGA+TGG - chr7.2:4760855-4760874 MS.gene28631:CDS 50.0%
!! TCGATGGTCAAGGGAGTATC+TGG - chr7.2:4761878-4761897 MS.gene28631:intron 50.0%
ACCGGCTGGAACAAAGAGCT+TGG + chr7.2:4760952-4760971 None:intergenic 55.0%
ACCGTCTTATGGGCGAGGAA+GGG - chr7.2:4761694-4761713 MS.gene28631:intron 55.0%
AGACTCCTATGCCTTCCACC+CGG + chr7.2:4761725-4761744 None:intergenic 55.0%
AGCTCTTTGTTCCAGCCGGT+CGG - chr7.2:4760952-4760971 MS.gene28631:intron 55.0%
GCCAAGCTCTTTGTTCCAGC+CGG - chr7.2:4760948-4760967 MS.gene28631:intron 55.0%
TACCGTCTTATGGGCGAGGA+AGG - chr7.2:4761693-4761712 MS.gene28631:intron 55.0%
TCCCTTCCTCGCCCATAAGA+CGG + chr7.2:4761698-4761717 None:intergenic 55.0%
TGAAGCTTGTGAGCCGCTCA+AGG - chr7.2:4762910-4762929 MS.gene28631:intron 55.0%
TTGAGCGGCTCACAAGCTTC+AGG + chr7.2:4762911-4762930 None:intergenic 55.0%
! ACTACCGGTTAACCACCGAC+CGG + chr7.2:4760970-4760989 None:intergenic 55.0%
CCTCGCCCATAAGACGGTAG+AGG + chr7.2:4761692-4761711 None:intergenic 60.0%
CCTCTACCGTCTTATGGGCG+AGG - chr7.2:4761689-4761708 MS.gene28631:intron 60.0%
CTTGTGAGCCGCTCAAGGAG+AGG - chr7.2:4762915-4762934 MS.gene28631:intron 60.0%
TCTTTGTTCCAGCCGGTCGG+TGG - chr7.2:4760955-4760974 MS.gene28631:intron 60.0%
! AGTTGCCGGGTGGAAGGCAT+AGG - chr7.2:4761717-4761736 MS.gene28631:intron 60.0%
CCAGCCGGTCGGTGGTTAAC+CGG - chr7.2:4760963-4760982 MS.gene28631:intron 65.0%
GAAGGGAGTTGCCGGGTGGA+AGG - chr7.2:4761711-4761730 MS.gene28631:intron 65.0%
TGGGCGAGGAAGGGAGTTGC+CGG - chr7.2:4761703-4761722 MS.gene28631:intron 65.0%
CCGGTTAACCACCGACCGGC+TGG + chr7.2:4760966-4760985 None:intergenic 70.0%
CGAGGAAGGGAGTTGCCGGG+TGG - chr7.2:4761707-4761726 MS.gene28631:intron 70.0%
GGGCGAGGAAGGGAGTTGCC+GGG - chr7.2:4761704-4761723 MS.gene28631:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 4760244 4763033 4760244 ID=MS.gene28631
chr7.2 mRNA 4760244 4763033 4760244 ID=MS.gene28631.t1;Parent=MS.gene28631
chr7.2 exon 4763016 4763033 4763016 ID=MS.gene28631.t1.exon1;Parent=MS.gene28631.t1
chr7.2 CDS 4763016 4763033 4763016 ID=cds.MS.gene28631.t1;Parent=MS.gene28631.t1
chr7.2 exon 4762225 4762542 4762225 ID=MS.gene28631.t1.exon2;Parent=MS.gene28631.t1
chr7.2 CDS 4762225 4762542 4762225 ID=cds.MS.gene28631.t1;Parent=MS.gene28631.t1
chr7.2 exon 4761495 4761615 4761495 ID=MS.gene28631.t1.exon3;Parent=MS.gene28631.t1
chr7.2 CDS 4761495 4761615 4761495 ID=cds.MS.gene28631.t1;Parent=MS.gene28631.t1
chr7.2 exon 4761169 4761414 4761169 ID=MS.gene28631.t1.exon4;Parent=MS.gene28631.t1
chr7.2 CDS 4761169 4761414 4761169 ID=cds.MS.gene28631.t1;Parent=MS.gene28631.t1
chr7.2 exon 4760244 4760941 4760244 ID=MS.gene28631.t1.exon5;Parent=MS.gene28631.t1
chr7.2 CDS 4760244 4760941 4760244 ID=cds.MS.gene28631.t1;Parent=MS.gene28631.t1
Gene Sequence

>MS.gene28631

ATGAGGAGACCTTCTACAGTAAGTACTTCTCTTTCACTTTCACTTTTTGCATCAATGTTGTTGTGAATGGAGTAATTAAGTAAGATCTAAAACTTCTTTTTATTTTATTTTAGAATAGTACTAGTTTGATCATCTACTCGTTAATTTTTATATAATTTGAGTTAATTCACTTAATTGTTTATGCTGATTCTCTTCTCAATTAATTTGCACTTAACAAAAAATGGGTTGTGATTGTTTTTTCAGTTTTGGTTGTTCATTTTTTGATAATGTAACTGATCTGAGTTGAATTGTTTTTAGCTCTGTCTAGATCCTACTACAATTTCATAATTTTCATCATGCTTTTTTTAATTACTGTTTGAAGAAGCATGAGAAATAAACTTGTGCTGTTTTAGTTCATGGTTTAATTAATTTGATAGAATCCAAAGTTGGGAAGTTGCTAGTGCTTGTGGTTTCACTGATGGTGATTTTTTTTTTTCTTTTCTGTTTTGCAGTTTGTGGATGTGTTTCTGGTACTTGCATTGTTCTGTTGTAGCTCATGGAAAGTGTGGAGTAGCACACTATGCAAAGAGACAAACTTGGACAAAGTTAGGCCTCATAGTGTTAGTATTACTGAATTTGGTGCAGTTGGCGATGGGATCACTCTCAACACAAAAGCATTTCAGAATGCGATTTTCTACCTAAATTCTTTCTCAGACAAAGGTGGAGCCAAGCTCTTTGTTCCAGCCGGTCGGTGGTTAACCGGTAGTTTTGATCTCATTAGTCACCTAACTTTGTGGTTGGACAAGGATGCAATAATTCTTGGATCAACAGTAAGCATTCACTCTTTAAAAATAATTTGGAATGTCACTTTCGGTTTCAGCATAACTTTCTTATCAATGTAGTGGTGGTTTATTTTAGTTGATAACTATATATAGGTAATTTCTGAGATATGGATTAGTTTACTATAAAAGGATTGAGTATTTGTACCCAAAAAAAGGATTGAGTATTAATTTTTCAAAATTGGGGTATAAGTAATCTTTATAGCAAGCCAAATTTGTATATTATGCATTGGTCTTTAAGTTTGTGTGCATTTGGTCCCACTTTTGAAGGAGGCAAAGTTGATTTCAGAGGTGTAGAGTTGATTTTGACATGTTTGGATGTTCTCAAGTAGTATTGATTTTGCTTCTAGAATTGATTCTAACTTGAAGCTAGAATTCGGAGCTTTTGCCTCTAAAATTGATTTGTAGCGTTGAATTTTTTGTTCAGTTCACTTTTGCTTGAGTTTATCCAAACATTATTCACTTTACATTCAACTCACTTGTAGCCATAATCAAGTCATTTAAAATAAATTTTATTACTGTAGAACCAAACACATGCTTCTAATCTGCTAAGATCTTGCAATTCGTTCAACTATGATATGTATATGTTCCTTGTTACAGAACTCTGAGGATTGGCCGGTTGTTGATCCTCTACCGTCTTATGGGCGAGGAAGGGAGTTGCCGGGTGGAAGGCATAGGAGTCTCATCTATGGATGTAATTTGACTGATGTTATCATAACAGGTTGGTGATATAAATATTCCGCAAATAACCGTGGTCTCTATACATGTTGGTTACTTGATTCTATTGCTGTCTAAATGAAGGTAATGAGGGGATTATCGATGGTCAAGGGAGTATCTGGTGGAGCATGTTTAGGAACAAAACTCTGGATTATACGCGTCCGCATTTGGTAGAATTGATGAATTCAACTGGGATTCTTATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACTATTCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAATGTCACGATCCTTGCTCCTCTTGATTCACCAAACACAGATGGGATCGATCCAGGTGAACTTTCTCCCTATTACTAACATATCTCATTTATCGATAACTTGATTGATAATGAATACAAAAGACTCTATTTATACATACGAGTCCATATGAAAATGAAAAGGATAACAAGGATAACTAATTCTTAACTAACTTATCTATAATACCCCTAGAATGTCATGTTCTGTGTGTATTTGACAATTTTGAAACCTAGATTCTCACGTTTACCTTCAAAATGTGTCCAGACTCTTCTGATGACGTGTGTATTGAAGACTGTTATATAAGCACTGGCGATGATCTGATTGCCATCAAAAGTGGGTGGGATGAATATGGAATTGCATTCGGTCGTCCCAGCACAAATATTGTCATCCACAGGCTTGTTGGAAAAACTCACACAAGCGCTGGGATAGCTATTGGAAGTGAGATGTCGGGTGGTGTATCAGATGTTCGTGCGGAAGATATTCGCTTTTATGATTCATATACTGGAATCAGAATAAAGACTTCACCTGGAAGAGGTGGTTATGTTAGAAACATCTATGTCACTAACATGACCTTGGCTAATGTTGATATTGCTATTCGGTTCACCGGCTCATATGGTGATCATCCAGATGATGCTTATGACCCAAATGCTTTACCAGTAATTGAAAAGATTACCATCGAGGATGTGATAGGTGAAAAGATCACAAAAGCAGGTCTTATAGAAGGTATAGAAGGTGACAATTTCGTCAACATATGCTTATCAAACATCACCCTCAATGTGAGCTCAAACTATCCATGGAACTGCTCTAACATTAGAGGATACTCTGACATGGTTTTTCCTGAAGCTTGTGAGCCGCTCAAGGAGAGGATATTCCCCGACCATTGTTCAGACTGTTATTATTTGTCGAATCACCAACAAAGTTCAAATAATCAAAACAGAGGTGCTTGGTTTATGTCTTGGTAA
Protein sequence

>MS.gene28631.t1

MRRPSTFVDVFLVLALFCCSSWKVWSSTLCKETNLDKVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFSDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAIILGSTNSEDWPVVDPLPSYGRGRELPGGRHRSLIYGCNLTDVIITGNEGIIDGQGSIWWSMFRNKTLDYTRPHLVELMNSTGILISNLTFLNSPFWTIHPVYCSQVTVQNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIVIHRLVGKTHTSAGIAIGSEMSGGVSDVRAEDIRFYDSYTGIRIKTSPGRGGYVRNIYVTNMTLANVDIAIRFTGSYGDHPDDAYDPNALPVIEKITIEDVIGEKITKAGLIEGIEGDNFVNICLSNITLNVSSNYPWNCSNIRGYSDMVFPEACEPLKERIFPDHCSDCYYLSNHQQSSNNQNRGAWFMSW