Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28660.t1 | ABD32844.1 | 82.9 | 146 | 25 | 0 | 1 | 146 | 454 | 599 | 4.20E-60 | 240.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28660.t1 | G7KVH9 | 82.9 | 146 | 25 | 0 | 1 | 146 | 596 | 741 | 3.0e-60 | 240.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051279 | MS.gene28660 | 0.80866 | 2.78E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene28660 | 0.812934 | 3.30E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene28660 | 0.807172 | 5.76E-50 | -1.69E-46 |
| MS.gene058919 | MS.gene28660 | 0.801958 | 7.04E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCCCAAGCAGTCCATTC+TGG | 0.264020 | 7.1:-3983109 | None:intergenic |
| ATCCAGTCTATGCCATTATC+AGG | 0.369025 | 7.1:+3981816 | MS.gene28660:CDS |
| AAGATATGACTATGTATTGT+TGG | 0.384764 | 7.1:-3983159 | None:intergenic |
| CTCAAAACTTCCAGCTATAC+AGG | 0.400917 | 7.1:+3981920 | MS.gene28660:CDS |
| CTGCTTCCATAACCTGATAA+TGG | 0.403037 | 7.1:-3981828 | None:intergenic |
| TTGCATGGAGGGGCACTGCT+TGG | 0.403387 | 7.1:+3981736 | MS.gene28660:CDS |
| TCTATGCCATTATCAGGTTA+TGG | 0.412474 | 7.1:+3981822 | MS.gene28660:CDS |
| ATAAATTTCACCTGTATAGC+TGG | 0.418298 | 7.1:-3981930 | None:intergenic |
| GCACCGGAGGCAACTGTTTG+TGG | 0.418498 | 7.1:+3983246 | MS.gene28660:CDS |
| AGGTCATTGGTTTGCATGGA+GGG | 0.419161 | 7.1:+3981725 | MS.gene28660:intron |
| CATATGCGACTAGTGCTGTT+TGG | 0.432824 | 7.1:+3983224 | MS.gene28660:CDS |
| GAAATAGCTGTAGCAGCAAT+AGG | 0.442850 | 7.1:-3981790 | None:intergenic |
| CTCAGCCAGAATGGACTGCT+TGG | 0.443742 | 7.1:+3983104 | MS.gene28660:CDS |
| AAGCACAATACTCGATGGTT+TGG | 0.448711 | 7.1:-3983129 | None:intergenic |
| TGGGAGACATTTCAGCCTGT+GGG | 0.458762 | 7.1:+3983070 | MS.gene28660:CDS |
| TTGGGAGACATTTCAGCCTG+TGG | 0.480746 | 7.1:+3983069 | MS.gene28660:CDS |
| CTCTACTTCCTCAGCCAGAA+TGG | 0.481221 | 7.1:+3983095 | MS.gene28660:CDS |
| CTCCCAGGTATCTATATTGT+GGG | 0.482317 | 7.1:-3983189 | None:intergenic |
| TCAGCCAGAATGGACTGCTT+GGG | 0.494971 | 7.1:+3983105 | MS.gene28660:CDS |
| GGTCATTGGTTTGCATGGAG+GGG | 0.497803 | 7.1:+3981726 | MS.gene28660:intron |
| CAAACAGCACTAGTCGCATA+TGG | 0.507974 | 7.1:-3983223 | None:intergenic |
| CGACTAGTGCTGTTTGGCAC+CGG | 0.523385 | 7.1:+3983230 | MS.gene28660:CDS |
| TCTCCCAGGTATCTATATTG+TGG | 0.523820 | 7.1:-3983190 | None:intergenic |
| GATGCTTACTCAATAGTAGT+TGG | 0.524936 | 7.1:-3983274 | None:intergenic |
| GCGCCCACAATATAGATACC+TGG | 0.528122 | 7.1:+3983186 | MS.gene28660:CDS |
| TAGGTCATTGGTTTGCATGG+AGG | 0.530097 | 7.1:+3981724 | MS.gene28660:intron |
| TTGCCACAAACAGTTGCCTC+CGG | 0.540164 | 7.1:-3983249 | None:intergenic |
| AACCTGATAATGGCATAGAC+TGG | 0.543681 | 7.1:-3981818 | None:intergenic |
| GGGAGACATTTCAGCCTGTG+GGG | 0.550620 | 7.1:+3983071 | MS.gene28660:CDS |
| CAAGCAGTCCATTCTGGCTG+AGG | 0.551410 | 7.1:-3983103 | None:intergenic |
| GGAGACATTTCAGCCTGTGG+GGG | 0.556776 | 7.1:+3983072 | MS.gene28660:CDS |
| GATTCTCCTAGATGTTCGAT+AGG | 0.575353 | 7.1:-3981764 | None:intergenic |
| CGCCCACAATATAGATACCT+GGG | 0.576267 | 7.1:+3983187 | MS.gene28660:CDS |
| AAATAGATCTCCAGCTGAGG+CGG | 0.578862 | 7.1:+3981894 | MS.gene28660:CDS |
| CTAGTGCTGTTTGGCACCGG+AGG | 0.583399 | 7.1:+3983233 | MS.gene28660:CDS |
| GTGTTGCCTATCGAACATCT+AGG | 0.592674 | 7.1:+3981758 | MS.gene28660:CDS |
| TTCAAATAGATCTCCAGCTG+AGG | 0.612307 | 7.1:+3981891 | MS.gene28660:CDS |
| TGCAAAAGCACAATACTCGA+TGG | 0.635069 | 7.1:-3983134 | None:intergenic |
| ATGGAATTGAAACATCTCCC+AGG | 0.638441 | 7.1:-3983204 | None:intergenic |
| TTATCAGGTTATGGAAGCAG+CGG | 0.668159 | 7.1:+3981831 | MS.gene28660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAACTCATTTTTAAAAAAA+AGG | + | chr7.1:3982419-3982438 | MS.gene28660:intron | 10.0% |
| !!! | AAACTCATTTTTAAAAAAAA+GGG | + | chr7.1:3982420-3982439 | MS.gene28660:intron | 10.0% |
| !!! | ATCTATTTATTTTTAAAACA+AGG | + | chr7.1:3982376-3982395 | MS.gene28660:intron | 10.0% |
| !!! | TCTTAGATTTTTTTTTTTTT+AGG | + | chr7.1:3981538-3981557 | MS.gene28660:intron | 10.0% |
| !! | AAAGTTTATCATAATAATCT+AGG | + | chr7.1:3981126-3981145 | MS.gene28660:intron | 15.0% |
| !!! | TAAAAAAAAGGGATTTTAAT+GGG | + | chr7.1:3982431-3982450 | MS.gene28660:intron | 15.0% |
| !!! | TATTTATTTTTAAAACAAGG+AGG | + | chr7.1:3982379-3982398 | MS.gene28660:intron | 15.0% |
| !!! | TCTGCAATATTTATATATTT+TGG | + | chr7.1:3982193-3982212 | MS.gene28660:intron | 15.0% |
| !!! | TTAAAAAAAAGGGATTTTAA+TGG | + | chr7.1:3982430-3982449 | MS.gene28660:intron | 15.0% |
| !! | AAATGCAATGTCAAATTAAA+AGG | - | chr7.1:3983030-3983049 | None:intergenic | 20.0% |
| !! | AACAAAGATTAAAGTAATAC+TGG | - | chr7.1:3982976-3982995 | None:intergenic | 20.0% |
| !! | ATGAATTTAATGCAAATCAA+GGG | - | chr7.1:3982939-3982958 | None:intergenic | 20.0% |
| !! | CATGTTTCTTAAATGTTATT+AGG | + | chr7.1:3982790-3982809 | MS.gene28660:intron | 20.0% |
| !! | GAAAAAATCTTAAACAAACA+GGG | - | chr7.1:3982237-3982256 | None:intergenic | 20.0% |
| !! | TATGAATTTAATGCAAATCA+AGG | - | chr7.1:3982940-3982959 | None:intergenic | 20.0% |
| !! | TATTATGATAAACTTTAACG+AGG | - | chr7.1:3981122-3981141 | None:intergenic | 20.0% |
| !! | TGAAAAAATCTTAAACAAAC+AGG | - | chr7.1:3982238-3982257 | None:intergenic | 20.0% |
| !!! | AAAAAATGATTTCTAGGTAA+AGG | - | chr7.1:3982591-3982610 | None:intergenic | 20.0% |
| ! | AAAAAAATGACATGTGGTTT+AGG | - | chr7.1:3982891-3982910 | None:intergenic | 25.0% |
| ! | AAGATATGACTATGTATTGT+TGG | - | chr7.1:3983162-3983181 | None:intergenic | 25.0% |
| ! | AATAGAGTACACTATTTAGT+AGG | - | chr7.1:3981274-3981293 | None:intergenic | 25.0% |
| ! | ATATATAAATATTGCAGAGC+AGG | - | chr7.1:3982191-3982210 | None:intergenic | 25.0% |
| ! | CCTTAAAATGAAAAGCTATT+AGG | + | chr7.1:3982337-3982356 | MS.gene28660:intron | 25.0% |
| ! | TATATAAATATTGCAGAGCA+GGG | - | chr7.1:3982190-3982209 | None:intergenic | 25.0% |
| !! | AGGCAATACTTTATTTACAA+AGG | - | chr7.1:3982021-3982040 | None:intergenic | 25.0% |
| !! | CCTAATAGCTTTTCATTTTA+AGG | - | chr7.1:3982340-3982359 | None:intergenic | 25.0% |
| !! | TCTTTTACTACTTATGATGA+TGG | + | chr7.1:3981861-3981880 | MS.gene28660:CDS | 25.0% |
| !! | TTTTCTTGTAAAATGTTGTG+TGG | + | chr7.1:3981465-3981484 | MS.gene28660:intron | 25.0% |
| !!! | AATCTTTGTTAGCTTTAATG+AGG | + | chr7.1:3982986-3983005 | MS.gene28660:intron | 25.0% |
| !!! | ATCTTTGTTAGCTTTAATGA+GGG | + | chr7.1:3982987-3983006 | MS.gene28660:intron | 25.0% |
| !!! | ATTGCATTTTATTTTGTCTG+TGG | + | chr7.1:3983041-3983060 | MS.gene28660:intron | 25.0% |
| !!! | TCATTTTGAAGTGTTTGTTT+TGG | + | chr7.1:3982274-3982293 | MS.gene28660:intron | 25.0% |
| AAACTGAGAAAGAATCTTAC+TGG | - | chr7.1:3981091-3981110 | None:intergenic | 30.0% | |
| AAAGAGAAGTTAGAACAGTT+GGG | - | chr7.1:3982631-3982650 | None:intergenic | 30.0% | |
| AGCTATACAGGTGAAATTTA+TGG | + | chr7.1:3981932-3981951 | MS.gene28660:intron | 30.0% | |
| ATAAATTTCACCTGTATAGC+TGG | - | chr7.1:3981933-3981952 | None:intergenic | 30.0% | |
| CTCTATTCTTAGACTAATCA+TGG | + | chr7.1:3981287-3981306 | MS.gene28660:intron | 30.0% | |
| GAGCTGAAAAAATGATTTCT+AGG | - | chr7.1:3982597-3982616 | None:intergenic | 30.0% | |
| GTGCTATAGAAAGGAATTAT+GGG | + | chr7.1:3981409-3981428 | MS.gene28660:intron | 30.0% | |
| TAAAGAGAAGTTAGAACAGT+TGG | - | chr7.1:3982632-3982651 | None:intergenic | 30.0% | |
| TAGAATGCTCACATGTATAA+GGG | + | chr7.1:3982050-3982069 | MS.gene28660:intron | 30.0% | |
| TGAGAGAAAAAAATGACATG+TGG | - | chr7.1:3982897-3982916 | None:intergenic | 30.0% | |
| TGAGCATTCTAATCTTAAAG+AGG | - | chr7.1:3982041-3982060 | None:intergenic | 30.0% | |
| TTAGAATGCTCACATGTATA+AGG | + | chr7.1:3982049-3982068 | MS.gene28660:intron | 30.0% | |
| ! | ATACTTTATTTACAAAGGCC+AGG | - | chr7.1:3982016-3982035 | None:intergenic | 30.0% |
| ! | CTTTGAAGAATAACATACAC+AGG | - | chr7.1:3981636-3981655 | None:intergenic | 30.0% |
| !! | AAAGCCTTGATTGTTATTTG+AGG | - | chr7.1:3982866-3982885 | None:intergenic | 30.0% |
| !! | AAGAGAGTATCTTTGAAAAC+AGG | + | chr7.1:3981653-3981672 | MS.gene28660:intron | 30.0% |
| !! | AAGCCTTGATTGTTATTTGA+GGG | - | chr7.1:3982865-3982884 | None:intergenic | 30.0% |
| !! | TTTGGTTGATAGAAAGACTT+GGG | + | chr7.1:3982211-3982230 | MS.gene28660:intron | 30.0% |
| !!! | TTGATGATTCTGGCTTTTAT+TGG | + | chr7.1:3981151-3981170 | MS.gene28660:intron | 30.0% |
| !!! | TTTTGGTTGATAGAAAGACT+TGG | + | chr7.1:3982210-3982229 | MS.gene28660:intron | 30.0% |
| AAAAAAAAGAATGCCTCCGA+TGG | - | chr7.1:3982684-3982703 | None:intergenic | 35.0% | |
| AACTATCTTGTGCATGTCTT+GGG | - | chr7.1:3981351-3981370 | None:intergenic | 35.0% | |
| ATGACCTAAAAGAGATACAC+CGG | - | chr7.1:3981712-3981731 | None:intergenic | 35.0% | |
| CTATCTCTGCATAACAGAAA+AGG | - | chr7.1:3982163-3982182 | None:intergenic | 35.0% | |
| CTGTATGAAATTGGCTATAG+TGG | + | chr7.1:3981492-3981511 | MS.gene28660:intron | 35.0% | |
| GAGCGACAATTTGAATGTTA+GGG | + | chr7.1:3981675-3981694 | MS.gene28660:intron | 35.0% | |
| TATTTACAAAGGCCAGGTTA+GGG | - | chr7.1:3982010-3982029 | None:intergenic | 35.0% | |
| TCACCCTCAAATAACAATCA+AGG | + | chr7.1:3982859-3982878 | MS.gene28660:intron | 35.0% | |
| TCTATGCCATTATCAGGTTA+TGG | + | chr7.1:3981822-3981841 | MS.gene28660:CDS | 35.0% | |
| TGAAGAATAACATACACAGG+AGG | - | chr7.1:3981633-3981652 | None:intergenic | 35.0% | |
| TGTGGACATCTGTATGAAAT+TGG | + | chr7.1:3981483-3981502 | MS.gene28660:intron | 35.0% | |
| TTATTTACAAAGGCCAGGTT+AGG | - | chr7.1:3982011-3982030 | None:intergenic | 35.0% | |
| ! | ATTTTGTCTGTGGTTCAGTT+GGG | + | chr7.1:3983051-3983070 | MS.gene28660:intron | 35.0% |
| ! | CTTTTCTGTTATGCAGAGAT+AGG | + | chr7.1:3982161-3982180 | MS.gene28660:intron | 35.0% |
| ! | GATTTCTAGGTAAAGGAACT+GGG | - | chr7.1:3982584-3982603 | None:intergenic | 35.0% |
| ! | GGTGCTATAGAAAGGAATTA+TGG | + | chr7.1:3981408-3981427 | MS.gene28660:intron | 35.0% |
| ! | TATTTTGTCTGTGGTTCAGT+TGG | + | chr7.1:3983050-3983069 | MS.gene28660:intron | 35.0% |
| ! | TGATTTCTAGGTAAAGGAAC+TGG | - | chr7.1:3982585-3982604 | None:intergenic | 35.0% |
| ! | TGCACAAGATAGTTGATGTT+TGG | + | chr7.1:3981357-3981376 | MS.gene28660:intron | 35.0% |
| !! | AAGGGATTTTAATGGGTAGT+AGG | + | chr7.1:3982438-3982457 | MS.gene28660:intron | 35.0% |
| !! | AATCTAGGAGTTGATGATTC+TGG | + | chr7.1:3981141-3981160 | MS.gene28660:intron | 35.0% |
| !! | GTGTATCTCTTTTAGGTCAT+TGG | + | chr7.1:3981712-3981731 | MS.gene28660:intron | 35.0% |
| !! | TTGATTGTTATTTGAGGGTG+AGG | - | chr7.1:3982860-3982879 | None:intergenic | 35.0% |
| !! | TTGTTTTGCAACTGCCAATT+CGG | + | chr7.1:3981387-3981406 | MS.gene28660:intron | 35.0% |
| !!! | GCCACTTTTACTCTAGTTTT+GGG | + | chr7.1:3982074-3982093 | MS.gene28660:intron | 35.0% |
| !!! | TGCCACTTTTACTCTAGTTT+TGG | + | chr7.1:3982073-3982092 | MS.gene28660:intron | 35.0% |
| !!! | TTTACTCTAGTTTTGGGCTT+GGG | + | chr7.1:3982080-3982099 | MS.gene28660:intron | 35.0% |
| !!! | TTTTACTCTAGTTTTGGGCT+TGG | + | chr7.1:3982079-3982098 | MS.gene28660:intron | 35.0% |
| !!! | TTTTAGGTCATTGGTTTGCA+TGG | + | chr7.1:3981721-3981740 | MS.gene28660:intron | 35.0% |
| AAGCACAATACTCGATGGTT+TGG | - | chr7.1:3983132-3983151 | None:intergenic | 40.0% | |
| ACAAACAGATTGACGACTCT+TGG | - | chr7.1:3981587-3981606 | None:intergenic | 40.0% | |
| ACTGGGCAACACAAACTATA+TGG | - | chr7.1:3982567-3982586 | None:intergenic | 40.0% | |
| ATCCAGTCTATGCCATTATC+AGG | + | chr7.1:3981816-3981835 | MS.gene28660:CDS | 40.0% | |
| ATGGAATTGAAACATCTCCC+AGG | - | chr7.1:3983207-3983226 | None:intergenic | 40.0% | |
| CAACTATCTTGTGCATGTCT+TGG | - | chr7.1:3981352-3981371 | None:intergenic | 40.0% | |
| CTCAAAACTTCCAGCTATAC+AGG | + | chr7.1:3981920-3981939 | MS.gene28660:CDS | 40.0% | |
| CTCCCAGGTATCTATATTGT+GGG | - | chr7.1:3983192-3983211 | None:intergenic | 40.0% | |
| CTGCTTCCATAACCTGATAA+TGG | - | chr7.1:3981831-3981850 | None:intergenic | 40.0% | |
| CTGGGCAACACAAACTATAT+GGG | - | chr7.1:3982566-3982585 | None:intergenic | 40.0% | |
| CTTGGGGTAGATTTACGTTT+AGG | + | chr7.1:3982097-3982116 | MS.gene28660:intron | 40.0% | |
| GAAATAGCTGTAGCAGCAAT+AGG | - | chr7.1:3981793-3981812 | None:intergenic | 40.0% | |
| GATTCTCCTAGATGTTCGAT+AGG | - | chr7.1:3981767-3981786 | None:intergenic | 40.0% | |
| GCCCAAAACTAGAGTAAAAG+TGG | - | chr7.1:3982078-3982097 | None:intergenic | 40.0% | |
| GGAGCGACAATTTGAATGTT+AGG | + | chr7.1:3981674-3981693 | MS.gene28660:intron | 40.0% | |
| TCTCCCAGGTATCTATATTG+TGG | - | chr7.1:3983193-3983212 | None:intergenic | 40.0% | |
| TCTTGGCAACAGTATAGAAG+TGG | - | chr7.1:3981570-3981589 | None:intergenic | 40.0% | |
| TTATCAGGTTATGGAAGCAG+CGG | + | chr7.1:3981831-3981850 | MS.gene28660:CDS | 40.0% | |
| TTCAAATAGATCTCCAGCTG+AGG | + | chr7.1:3981891-3981910 | MS.gene28660:CDS | 40.0% | |
| ! | CTGTATAGCTGGAAGTTTTG+AGG | - | chr7.1:3981922-3981941 | None:intergenic | 40.0% |
| ! | TCCTTTCTATAGCACCGAAT+TGG | - | chr7.1:3981404-3981423 | None:intergenic | 40.0% |
| ! | TGAACCGGTGTATCTCTTTT+AGG | + | chr7.1:3981705-3981724 | MS.gene28660:intron | 40.0% |
| ! | TGCAAAAGCACAATACTCGA+TGG | - | chr7.1:3983137-3983156 | None:intergenic | 40.0% |
| ! | TTTACGTTTAGGATTCCCTC+TGG | + | chr7.1:3982108-3982127 | MS.gene28660:intron | 40.0% |
| !! | AACCTGATAATGGCATAGAC+TGG | - | chr7.1:3981821-3981840 | None:intergenic | 40.0% |
| !! | AAGAGATACACCGGTTCAAA+AGG | - | chr7.1:3981703-3981722 | None:intergenic | 40.0% |
| !! | ATTGTTATTTGAGGGTGAGG+TGG | - | chr7.1:3982857-3982876 | None:intergenic | 40.0% |
| !! | TGTTAGGGTACCTTTTGAAC+CGG | + | chr7.1:3981690-3981709 | MS.gene28660:intron | 40.0% |
| !!! | GTTTCCTTTTTTCCCTAACC+TGG | + | chr7.1:3981995-3982014 | MS.gene28660:intron | 40.0% |
| !!! | TTACTCTAGTTTTGGGCTTG+GGG | + | chr7.1:3982081-3982100 | MS.gene28660:intron | 40.0% |
| AAATAGATCTCCAGCTGAGG+CGG | + | chr7.1:3981894-3981913 | MS.gene28660:CDS | 45.0% | |
| AAGGCCAGGTTAGGGAAAAA+AGG | - | chr7.1:3982002-3982021 | None:intergenic | 45.0% | |
| CAAACAGCACTAGTCGCATA+TGG | - | chr7.1:3983226-3983245 | None:intergenic | 45.0% | |
| CGCCCACAATATAGATACCT+GGG | + | chr7.1:3983187-3983206 | MS.gene28660:CDS | 45.0% | |
| GTGTTGCCTATCGAACATCT+AGG | + | chr7.1:3981758-3981777 | MS.gene28660:CDS | 45.0% | |
| TATGCAAGTGTCTCTCTGCA+AGG | + | chr7.1:3982650-3982669 | MS.gene28660:intron | 45.0% | |
| TGAGTGCAGAAAGTCTTGCA+AGG | - | chr7.1:3982772-3982791 | None:intergenic | 45.0% | |
| TGCCAAACAAAGTGACTGAC+AGG | - | chr7.1:3982816-3982835 | None:intergenic | 45.0% | |
| TGGGATAATTCGCGAGTGAA+AGG | + | chr7.1:3981428-3981447 | MS.gene28660:intron | 45.0% | |
| ! | CATATGCGACTAGTGCTGTT+TGG | + | chr7.1:3983224-3983243 | MS.gene28660:CDS | 45.0% |
| ! | TGCATGCTCATGGTTGTTTC+TGG | + | chr7.1:3982131-3982150 | MS.gene28660:intron | 45.0% |
| !! | AGGTCATTGGTTTGCATGGA+GGG | + | chr7.1:3981725-3981744 | MS.gene28660:intron | 45.0% |
| !! | GCCAATTCGGTGCTATAGAA+AGG | + | chr7.1:3981400-3981419 | MS.gene28660:intron | 45.0% |
| !! | TAGGTCATTGGTTTGCATGG+AGG | + | chr7.1:3981724-3981743 | MS.gene28660:intron | 45.0% |
| !!! | CTTTTTTTTTTTTTTTATAA+GGG | + | chr7.1:3982695-3982714 | MS.gene28660:intron | 5.0% |
| !!! | TCTTTTTTTTTTTTTTTATA+AGG | + | chr7.1:3982694-3982713 | MS.gene28660:intron | 5.0% |
| AACCATGAGCATGCACCAGA+GGG | - | chr7.1:3982126-3982145 | None:intergenic | 50.0% | |
| CTCTACTTCCTCAGCCAGAA+TGG | + | chr7.1:3983095-3983114 | MS.gene28660:CDS | 50.0% | |
| CTGCAAGGTTGAAGCTCCAT+CGG | + | chr7.1:3982665-3982684 | MS.gene28660:intron | 50.0% | |
| GCGCCCACAATATAGATACC+TGG | + | chr7.1:3983186-3983205 | MS.gene28660:CDS | 50.0% | |
| TGGGAGACATTTCAGCCTGT+GGG | + | chr7.1:3983070-3983089 | MS.gene28660:CDS | 50.0% | |
| TTGCCACAAACAGTTGCCTC+CGG | - | chr7.1:3983252-3983271 | None:intergenic | 50.0% | |
| TTGGGAGACATTTCAGCCTG+TGG | + | chr7.1:3983069-3983088 | MS.gene28660:CDS | 50.0% | |
| ! | GGCCTGTCAGTCACTTTGTT+TGG | + | chr7.1:3982811-3982830 | MS.gene28660:intron | 50.0% |
| !! | GGTCATTGGTTTGCATGGAG+GGG | + | chr7.1:3981726-3981745 | MS.gene28660:intron | 50.0% |
| !! | TCAGCCAGAATGGACTGCTT+GGG | + | chr7.1:3983105-3983124 | MS.gene28660:CDS | 50.0% |
| ATTTGAGGGTGAGGTGGCAG+TGG | - | chr7.1:3982851-3982870 | None:intergenic | 55.0% | |
| CAACCATGAGCATGCACCAG+AGG | - | chr7.1:3982127-3982146 | None:intergenic | 55.0% | |
| CAAGGTTGAAGCTCCATCGG+AGG | + | chr7.1:3982668-3982687 | MS.gene28660:intron | 55.0% | |
| GGAGACATTTCAGCCTGTGG+GGG | + | chr7.1:3983072-3983091 | MS.gene28660:CDS | 55.0% | |
| GGGAGACATTTCAGCCTGTG+GGG | + | chr7.1:3983071-3983090 | MS.gene28660:CDS | 55.0% | |
| TGGTCCCAAGCAGTCCATTC+TGG | - | chr7.1:3983112-3983131 | None:intergenic | 55.0% | |
| TTCCCTCTGGTGCATGCTCA+TGG | + | chr7.1:3982121-3982140 | MS.gene28660:intron | 55.0% | |
| ! | CAAGCAGTCCATTCTGGCTG+AGG | - | chr7.1:3983106-3983125 | None:intergenic | 55.0% |
| !! | CGACTAGTGCTGTTTGGCAC+CGG | + | chr7.1:3983230-3983249 | MS.gene28660:CDS | 55.0% |
| !! | CTCAGCCAGAATGGACTGCT+TGG | + | chr7.1:3983104-3983123 | MS.gene28660:CDS | 55.0% |
| GCACCGGAGGCAACTGTTTG+TGG | + | chr7.1:3983246-3983265 | MS.gene28660:CDS | 60.0% | |
| TGAGGAAGTAGAGCCCCCAC+AGG | - | chr7.1:3983088-3983107 | None:intergenic | 60.0% | |
| !! | CTAGTGCTGTTTGGCACCGG+AGG | + | chr7.1:3983233-3983252 | MS.gene28660:CDS | 60.0% |
| !! | TTGCATGGAGGGGCACTGCT+TGG | + | chr7.1:3981736-3981755 | MS.gene28660:CDS | 60.0% |
| !!! | TTTTGAGGTGCCGCCTCAGC+TGG | - | chr7.1:3981907-3981926 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3981084 | 3983287 | 3981084 | ID=MS.gene28660 |
| chr7.1 | mRNA | 3981084 | 3983287 | 3981084 | ID=MS.gene28660.t1;Parent=MS.gene28660 |
| chr7.1 | exon | 3981084 | 3981090 | 3981084 | ID=MS.gene28660.t1.exon1;Parent=MS.gene28660.t1 |
| chr7.1 | CDS | 3981084 | 3981090 | 3981084 | ID=cds.MS.gene28660.t1;Parent=MS.gene28660.t1 |
| chr7.1 | exon | 3981727 | 3981941 | 3981727 | ID=MS.gene28660.t1.exon2;Parent=MS.gene28660.t1 |
| chr7.1 | CDS | 3981727 | 3981941 | 3981727 | ID=cds.MS.gene28660.t1;Parent=MS.gene28660.t1 |
| chr7.1 | exon | 3983069 | 3983287 | 3983069 | ID=MS.gene28660.t1.exon3;Parent=MS.gene28660.t1 |
| chr7.1 | CDS | 3983069 | 3983287 | 3983069 | ID=cds.MS.gene28660.t1;Parent=MS.gene28660.t1 |
| Gene Sequence |
| Protein sequence |
