Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28673.t1 | XP_024638350.1 | 93.5 | 630 | 14 | 1 | 1 | 603 | 1 | 630 | 0.00E+00 | 1182.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28673.t1 | Q55G83 | 33.1 | 489 | 233 | 9 | 183 | 587 | 153 | 631 | 5.9e-69 | 263.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28673.t1 | Q2HTV1 | 93.5 | 630 | 14 | 1 | 1 | 603 | 1 | 630 | 0.0e+00 | 1182.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene064936 | MS.gene28673 | PPI |
MS.gene64242 | MS.gene28673 | PPI |
MS.gene073953 | MS.gene28673 | PPI |
MS.gene53578 | MS.gene28673 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28673.t1 | MTR_4g091510 | 93.492 | 630 | 14 | 1 | 1 | 603 | 1 | 630 | 0.0 | 1217 |
MS.gene28673.t1 | MTR_4g091510 | 93.440 | 625 | 14 | 1 | 6 | 603 | 1 | 625 | 0.0 | 1206 |
MS.gene28673.t1 | MTR_2g011640 | 72.496 | 629 | 141 | 3 | 4 | 603 | 50 | 675 | 0.0 | 931 |
MS.gene28673.t1 | MTR_8g464860 | 56.303 | 595 | 214 | 7 | 47 | 603 | 36 | 622 | 0.0 | 655 |
MS.gene28673.t1 | MTR_3g082750 | 28.399 | 331 | 178 | 9 | 217 | 515 | 203 | 506 | 2.29e-30 | 127 |
MS.gene28673.t1 | MTR_3g094740 | 28.053 | 303 | 170 | 7 | 214 | 487 | 200 | 483 | 1.34e-24 | 109 |
MS.gene28673.t1 | MTR_3g094740 | 28.053 | 303 | 170 | 7 | 214 | 487 | 200 | 483 | 1.56e-24 | 108 |
MS.gene28673.t1 | MTR_8g091710 | 27.759 | 299 | 168 | 7 | 214 | 483 | 191 | 470 | 2.35e-23 | 105 |
MS.gene28673.t1 | MTR_6g038750 | 26.562 | 384 | 241 | 7 | 212 | 577 | 126 | 486 | 3.07e-23 | 105 |
MS.gene28673.t1 | MTR_3g105760 | 23.632 | 402 | 243 | 8 | 216 | 579 | 123 | 498 | 5.93e-22 | 100 |
MS.gene28673.t1 | MTR_5g068050 | 26.257 | 358 | 199 | 11 | 216 | 532 | 126 | 459 | 1.50e-21 | 99.0 |
MS.gene28673.t1 | MTR_3g070410 | 25.723 | 311 | 185 | 9 | 227 | 503 | 96 | 394 | 1.13e-18 | 90.5 |
MS.gene28673.t1 | MTR_4g026450 | 23.559 | 399 | 241 | 10 | 213 | 577 | 150 | 518 | 2.10e-18 | 89.7 |
MS.gene28673.t1 | MTR_1g008980 | 25.816 | 337 | 174 | 13 | 205 | 487 | 21 | 335 | 5.82e-18 | 88.6 |
MS.gene28673.t1 | MTR_1g009860 | 25.614 | 285 | 160 | 7 | 219 | 473 | 132 | 394 | 3.60e-17 | 85.5 |
MS.gene28673.t1 | MTR_1g009860 | 25.614 | 285 | 160 | 7 | 219 | 473 | 132 | 394 | 4.21e-17 | 85.5 |
MS.gene28673.t1 | MTR_1g046620 | 24.561 | 285 | 165 | 7 | 229 | 487 | 195 | 455 | 1.49e-16 | 84.0 |
MS.gene28673.t1 | MTR_5g077080 | 25.087 | 287 | 164 | 8 | 232 | 489 | 98 | 362 | 1.69e-16 | 83.2 |
MS.gene28673.t1 | MTR_4g104070 | 27.419 | 310 | 152 | 10 | 229 | 493 | 79 | 360 | 6.87e-16 | 80.9 |
MS.gene28673.t1 | MTR_0053s0030 | 25.606 | 289 | 162 | 7 | 229 | 487 | 151 | 416 | 1.27e-13 | 74.3 |
MS.gene28673.t1 | MTR_1g095480 | 25.430 | 291 | 151 | 7 | 220 | 468 | 202 | 468 | 6.00e-12 | 69.3 |
MS.gene28673.t1 | MTR_1g095480 | 26.538 | 260 | 137 | 6 | 220 | 437 | 202 | 449 | 1.24e-11 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28673.t1 | AT1G11390 | 60.032 | 633 | 214 | 6 | 1 | 603 | 1 | 624 | 0.0 | 764 |
MS.gene28673.t1 | AT1G61640 | 60.432 | 556 | 189 | 5 | 77 | 603 | 68 | 621 | 0.0 | 685 |
MS.gene28673.t1 | AT1G61640 | 59.381 | 517 | 179 | 5 | 77 | 564 | 68 | 582 | 0.0 | 619 |
MS.gene28673.t1 | AT1G61640 | 56.980 | 351 | 148 | 3 | 77 | 425 | 68 | 417 | 3.40e-137 | 408 |
MS.gene28673.t1 | AT3G07700 | 27.586 | 319 | 176 | 8 | 217 | 506 | 192 | 484 | 2.52e-27 | 117 |
MS.gene28673.t1 | AT3G07700 | 26.946 | 334 | 185 | 9 | 217 | 521 | 192 | 495 | 2.97e-27 | 117 |
MS.gene28673.t1 | AT3G07700 | 26.946 | 334 | 185 | 9 | 217 | 521 | 192 | 495 | 2.97e-27 | 117 |
MS.gene28673.t1 | AT3G07700 | 26.946 | 334 | 185 | 9 | 217 | 521 | 192 | 495 | 2.97e-27 | 117 |
MS.gene28673.t1 | AT5G24970 | 24.601 | 439 | 257 | 11 | 189 | 579 | 148 | 560 | 9.18e-25 | 109 |
MS.gene28673.t1 | AT5G24970 | 24.601 | 439 | 257 | 11 | 189 | 579 | 109 | 521 | 1.16e-24 | 109 |
MS.gene28673.t1 | AT5G64940 | 28.053 | 303 | 170 | 7 | 214 | 487 | 215 | 498 | 1.60e-24 | 108 |
MS.gene28673.t1 | AT5G64940 | 28.053 | 303 | 170 | 7 | 214 | 487 | 215 | 498 | 1.60e-24 | 108 |
MS.gene28673.t1 | AT1G65950 | 27.221 | 349 | 199 | 9 | 180 | 493 | 53 | 381 | 1.40e-22 | 101 |
MS.gene28673.t1 | AT1G65950 | 29.153 | 295 | 162 | 8 | 180 | 439 | 53 | 335 | 2.39e-22 | 101 |
MS.gene28673.t1 | AT1G79600 | 28.041 | 296 | 162 | 8 | 221 | 487 | 150 | 423 | 2.95e-22 | 102 |
MS.gene28673.t1 | AT5G24970 | 24.146 | 439 | 256 | 12 | 189 | 579 | 109 | 518 | 1.38e-21 | 99.8 |
MS.gene28673.t1 | AT5G05200 | 25.680 | 331 | 193 | 9 | 221 | 519 | 129 | 438 | 5.62e-21 | 97.4 |
MS.gene28673.t1 | AT1G71810 | 25.067 | 375 | 243 | 5 | 221 | 577 | 123 | 477 | 5.84e-21 | 97.8 |
MS.gene28673.t1 | AT5G50330 | 29.236 | 301 | 140 | 9 | 229 | 484 | 76 | 348 | 3.91e-19 | 91.3 |
MS.gene28673.t1 | AT4G24810 | 26.752 | 314 | 151 | 8 | 229 | 494 | 33 | 315 | 1.55e-17 | 84.3 |
MS.gene28673.t1 | AT4G24810 | 26.837 | 313 | 150 | 8 | 229 | 493 | 33 | 314 | 2.93e-17 | 85.1 |
MS.gene28673.t1 | AT4G24810 | 26.837 | 313 | 150 | 8 | 229 | 493 | 33 | 314 | 2.93e-17 | 85.1 |
MS.gene28673.t1 | AT4G24810 | 26.837 | 313 | 150 | 8 | 229 | 493 | 76 | 357 | 4.28e-17 | 84.7 |
MS.gene28673.t1 | AT4G24810 | 28.571 | 259 | 118 | 7 | 229 | 439 | 33 | 272 | 1.21e-16 | 81.6 |
MS.gene28673.t1 | AT5G24810 | 26.667 | 345 | 179 | 14 | 195 | 487 | 60 | 382 | 1.82e-16 | 84.0 |
MS.gene28673.t1 | AT3G24190 | 24.324 | 296 | 179 | 7 | 214 | 487 | 191 | 463 | 2.70e-16 | 83.2 |
MS.gene28673.t1 | AT4G31390 | 25.172 | 290 | 165 | 7 | 219 | 478 | 168 | 435 | 3.25e-16 | 82.8 |
MS.gene28673.t1 | AT4G24810 | 27.273 | 308 | 162 | 10 | 229 | 493 | 33 | 321 | 3.88e-16 | 81.6 |
MS.gene28673.t1 | AT2G39190 | 27.861 | 201 | 134 | 3 | 220 | 419 | 201 | 391 | 5.73e-14 | 75.9 |
MS.gene28673.t1 | AT2G39190 | 28.743 | 167 | 108 | 3 | 220 | 385 | 201 | 357 | 7.33e-13 | 70.9 |
Find 143 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCACCATTTGCAGATTATTT+TGG | 0.167715 | 4.2:-20794053 | MS.gene28673:CDS |
AGTTCATCCCTGCGCTTAAT+TGG | 0.233298 | 4.2:-20793617 | MS.gene28673:CDS |
TGGAAAAGGCATTTACCTTT+TGG | 0.276940 | 4.2:-20784634 | MS.gene28673:CDS |
GTAGAAGGCCTGGTCTTGTT+AGG | 0.291072 | 4.2:-20794122 | MS.gene28673:CDS |
CAGGTCCGGCATTCATAAAA+TGG | 0.303106 | 4.2:-20793977 | MS.gene28673:CDS |
ACTTGTGCATCCCGCAGTTT+TGG | 0.315016 | 4.2:-20793451 | MS.gene28673:CDS |
TTTGCATTTGTTGTGGTAGA+AGG | 0.328347 | 4.2:-20794137 | MS.gene28673:CDS |
AATCCATAAAAGCAGATATC+TGG | 0.329375 | 4.2:-20794603 | MS.gene28673:CDS |
AAAACTATGCTCAGGGGCTT+TGG | 0.338841 | 4.2:+20793884 | None:intergenic |
TGCCATCAATATTAACTCTA+TGG | 0.356498 | 4.2:+20784543 | None:intergenic |
TTATTTACAATTTCCGTCAA+TGG | 0.356698 | 4.2:-20793506 | MS.gene28673:CDS |
TCAATATAAGCCTTCGGATC+AGG | 0.360819 | 4.2:+20792046 | None:intergenic |
TTGGTGGAAACATATGAAAA+TGG | 0.369350 | 4.2:-20793432 | MS.gene28673:CDS |
TATTCTTCCAATGGTTATAG+TGG | 0.376964 | 4.2:-20794356 | MS.gene28673:CDS |
CGCCATAGAGTTAATATTGA+TGG | 0.387144 | 4.2:-20784545 | MS.gene28673:CDS |
ATGGGCTTTGCTTGCTGACC+AGG | 0.400663 | 4.2:+20793729 | None:intergenic |
AAAACTATAGAAAGCGCATT+TGG | 0.402533 | 4.2:-20793849 | MS.gene28673:CDS |
TCCCTGCGCTTAATTGGTTA+AGG | 0.405133 | 4.2:-20793611 | MS.gene28673:CDS |
TGTCCTGCATCGGTTGATAT+TGG | 0.406194 | 4.2:+20794544 | None:intergenic |
ACAAGTGGATAAACAGGCTT+AGG | 0.406606 | 4.2:+20793468 | None:intergenic |
AGCAATTACTTGAGAAAGTT+AGG | 0.407683 | 4.2:-20784568 | MS.gene28673:CDS |
AGGTCCGGCATTCATAAAAT+GGG | 0.412415 | 4.2:-20793976 | MS.gene28673:CDS |
GAAGAATTGCCTGTTGCATC+TGG | 0.432722 | 4.2:-20793795 | MS.gene28673:CDS |
GGATGCACAAGTGGATAAAC+AGG | 0.432971 | 4.2:+20793462 | None:intergenic |
CACATAAATCTCAAATTGCT+TGG | 0.437682 | 4.2:-20794397 | MS.gene28673:CDS |
TGCGCTTAATTGGTTAAGGT+TGG | 0.442346 | 4.2:-20793607 | MS.gene28673:CDS |
TGGCAGCGCAAGCTTGATCC+CGG | 0.453902 | 4.2:-20784278 | MS.gene28673:CDS |
GATTGAACTACATCCTTCAC+TGG | 0.455273 | 4.2:+20794502 | None:intergenic |
TGTTAGTTGCAGTGAAGGTC+AGG | 0.455861 | 4.2:-20793707 | MS.gene28673:CDS |
GTCCTGCATCGGTTGATATT+GGG | 0.456084 | 4.2:+20794545 | None:intergenic |
ATTCATGCAGACATGCATCC+TGG | 0.462391 | 4.2:-20792277 | MS.gene28673:CDS |
GCACTCATACACAAAGCATT+TGG | 0.464871 | 4.2:+20794188 | None:intergenic |
TGTCATCAGAAATGCAGGTT+TGG | 0.465126 | 4.2:-20794579 | MS.gene28673:CDS |
AACAAGAACGAGTCAAAGCC+AGG | 0.466059 | 4.2:+20794297 | None:intergenic |
TAGCGATCGGGTGAATTTAG+TGG | 0.470738 | 4.2:-20792149 | MS.gene28673:CDS |
AATTGCTCCATGCAATCGGC+TGG | 0.471091 | 4.2:+20784584 | None:intergenic |
TTTCTAACAGGAAGTGGAAA+AGG | 0.472158 | 4.2:-20784648 | MS.gene28673:intron |
TACACTAGAAAGAGCAGGTC+CGG | 0.473539 | 4.2:-20793991 | MS.gene28673:CDS |
CAGCAAAATCAGTCAGATGC+AGG | 0.476405 | 4.2:-20794224 | MS.gene28673:CDS |
AGTTCAGGAAAATGTGGCTC+CGG | 0.476480 | 4.2:-20794025 | MS.gene28673:CDS |
GTGTAGCTAAAACTATGCTC+AGG | 0.476963 | 4.2:+20793876 | None:intergenic |
AAGTAATTGCTCCATGCAAT+CGG | 0.485113 | 4.2:+20784580 | None:intergenic |
GACCTTCACTGCAACTAACA+TGG | 0.486515 | 4.2:+20793710 | None:intergenic |
CTGAACTCTCTGGTAGCGAT+CGG | 0.487550 | 4.2:-20792162 | MS.gene28673:CDS |
GATTGCTCAAGCAGTGAGCC+TGG | 0.489155 | 4.2:-20794315 | MS.gene28673:CDS |
ACTCGAACAAGAATATTTCC+AGG | 0.491498 | 4.2:+20792259 | None:intergenic |
GCAGTGAAGGTCAGGCATCC+TGG | 0.494938 | 4.2:-20793699 | MS.gene28673:CDS |
CAATATAAGCCTTCGGATCA+GGG | 0.495816 | 4.2:+20792047 | None:intergenic |
ATTTGTTGTGGTAGAAGGCC+TGG | 0.496149 | 4.2:-20794132 | MS.gene28673:CDS |
TGTCTCAAGTTGACCTTGCA+AGG | 0.500238 | 4.2:-20793551 | MS.gene28673:CDS |
GCAATACTTCCAGATGCAAC+AGG | 0.505670 | 4.2:+20793786 | None:intergenic |
GGGGTCAGTGGGCGGCTACA+CGG | 0.505755 | 4.2:-20793956 | MS.gene28673:CDS |
ATTACCTCAATATAAGCCTT+CGG | 0.506641 | 4.2:+20792040 | None:intergenic |
TTATGCTTGGACACATTGGG+AGG | 0.510559 | 4.2:-20794646 | MS.gene28673:CDS |
TGTTCGAGTGCCTCAGAGCA+AGG | 0.513395 | 4.2:-20792245 | MS.gene28673:CDS |
CATTGCTGCTTAGAGCTGAC+TGG | 0.514309 | 4.2:-20784229 | MS.gene28673:CDS |
CTGGATGTCATCAGAAATGC+AGG | 0.516180 | 4.2:-20794584 | MS.gene28673:CDS |
TTAAAGACGCACGATGCACT+TGG | 0.516442 | 4.2:+20793763 | None:intergenic |
AACCTTAACCAATTAAGCGC+AGG | 0.518360 | 4.2:+20793609 | None:intergenic |
AATGAGCAGCTTCCCTTGCA+AGG | 0.519250 | 4.2:+20793538 | None:intergenic |
TGAACTCTCTGGTAGCGATC+GGG | 0.520551 | 4.2:-20792161 | MS.gene28673:CDS |
GGGCCAAAATAATCTGCAAA+TGG | 0.520579 | 4.2:+20794050 | None:intergenic |
AAAGCTGTTGCCCGCAGAGA+TGG | 0.526628 | 4.2:-20792118 | MS.gene28673:CDS |
ATATCTTGAGGAAATAGATC+AGG | 0.530009 | 4.2:+20793933 | None:intergenic |
CACCCAATATCAACCGATGC+AGG | 0.531406 | 4.2:-20794547 | MS.gene28673:CDS |
GCCCATGTTAGTTGCAGTGA+AGG | 0.532016 | 4.2:-20793712 | MS.gene28673:CDS |
TAGAAGGCCTGGTCTTGTTA+GGG | 0.534001 | 4.2:-20794121 | MS.gene28673:CDS |
TATGTTTCCACCAAAACTGC+GGG | 0.536343 | 4.2:+20793441 | None:intergenic |
TACTGTCATGGTGACCACCT+TGG | 0.536843 | 4.2:-20784513 | MS.gene28673:CDS |
ACCTTCTCGAGTTCCCCAAA+AGG | 0.537128 | 4.2:+20784619 | None:intergenic |
TGAGGCTTTGATTTGAAGAA+CGG | 0.538324 | 4.2:+20792214 | None:intergenic |
ATTCATAAAATGGGGTCAGT+GGG | 0.541035 | 4.2:-20793967 | MS.gene28673:CDS |
CATAAAATATATTCTTCCAA+TGG | 0.541989 | 4.2:-20794365 | MS.gene28673:CDS |
GGTAGATCCACTATAACCAT+TGG | 0.542434 | 4.2:+20794349 | None:intergenic |
ACCTTCACTGCAACTAACAT+GGG | 0.543161 | 4.2:+20793711 | None:intergenic |
AATGGTGCCATCAGTATGCT+TGG | 0.544641 | 4.2:+20794068 | None:intergenic |
AGCGGTCCGACCATCTCTGC+GGG | 0.550823 | 4.2:+20792108 | None:intergenic |
GAAGGTCAGGCATCCTGGTG+TGG | 0.551469 | 4.2:-20793694 | MS.gene28673:CDS |
GGCATGACTGCTGAACTCTC+TGG | 0.551548 | 4.2:-20792172 | MS.gene28673:CDS |
AAGACACGTCCCTCCATTGA+CGG | 0.554021 | 4.2:+20793493 | None:intergenic |
GTTCAGGAAAATGTGGCTCC+GGG | 0.558474 | 4.2:-20794024 | MS.gene28673:CDS |
CAGTATAAGTTTCCCAGTGA+AGG | 0.559877 | 4.2:-20794515 | MS.gene28673:CDS |
GACGGAAATTGTAAATAAAG+CGG | 0.560686 | 4.2:+20793511 | None:intergenic |
TACACAAAGCATTTGGTGAA+GGG | 0.561670 | 4.2:+20794195 | None:intergenic |
CTGATAGATTCTCCCACACC+AGG | 0.564921 | 4.2:+20793681 | None:intergenic |
AAGAATTACCTCTAAAACCA+AGG | 0.567303 | 4.2:+20784496 | None:intergenic |
TTTACAATTTCCGTCAATGG+AGG | 0.577225 | 4.2:-20793503 | MS.gene28673:CDS |
TGTAGCTAAAACTATGCTCA+GGG | 0.577705 | 4.2:+20793877 | None:intergenic |
CATTCATAAAATGGGGTCAG+TGG | 0.577994 | 4.2:-20793968 | MS.gene28673:CDS |
TATGCTTGGACACATTGGGA+GGG | 0.577995 | 4.2:-20794645 | MS.gene28673:CDS |
TCTTTAAAATATCGTTACCC+TGG | 0.578971 | 4.2:-20793747 | MS.gene28673:CDS |
ACAGAACTGCCCTGATCCGA+AGG | 0.579301 | 4.2:-20792056 | MS.gene28673:CDS |
CAAGTGGATAAACAGGCTTA+GGG | 0.583288 | 4.2:+20793469 | None:intergenic |
GGCAGCGCAAGCTTGATCCC+GGG | 0.583620 | 4.2:-20784277 | MS.gene28673:CDS |
AAGGTCAGGCATCCTGGTGT+GGG | 0.584830 | 4.2:-20793693 | MS.gene28673:CDS |
TGTCTCCATCACATTATACC+CGG | 0.586292 | 4.2:+20784259 | None:intergenic |
TTACAATTTCCGTCAATGGA+GGG | 0.587427 | 4.2:-20793502 | MS.gene28673:CDS |
CATAAAATGGGGTCAGTGGG+CGG | 0.590431 | 4.2:-20793964 | MS.gene28673:CDS |
TGGCAATGTTTGTACTGTCA+TGG | 0.591925 | 4.2:-20784525 | MS.gene28673:CDS |
GTGTGGGAGAATCTATCAGA+AGG | 0.592449 | 4.2:-20793677 | MS.gene28673:CDS |
ACCTTAACCAATTAAGCGCA+GGG | 0.595340 | 4.2:+20793610 | None:intergenic |
ATTGCTGCTTAGAGCTGACT+GGG | 0.597161 | 4.2:-20784228 | MS.gene28673:CDS |
ATTCTCTCCAAGCATACTGA+TGG | 0.598290 | 4.2:-20794075 | MS.gene28673:CDS |
TGATCCCGGGTATAATGTGA+TGG | 0.598520 | 4.2:-20784264 | MS.gene28673:CDS |
GGTTCACCCAGCCGATTGCA+TGG | 0.598937 | 4.2:-20784591 | MS.gene28673:CDS |
TAAAGACGCACGATGCACTT+GGG | 0.599670 | 4.2:+20793764 | None:intergenic |
ATACACAAAGCATTTGGTGA+AGG | 0.601176 | 4.2:+20794194 | None:intergenic |
AGCTTAGTACATATATCTTG+AGG | 0.603331 | 4.2:+20793921 | None:intergenic |
CCGCTGCTGAGTGCACACTT+AGG | 0.603489 | 4.2:-20792090 | MS.gene28673:CDS |
GCCCCGAGTTCAGGAAAATG+TGG | 0.603655 | 4.2:-20794031 | MS.gene28673:CDS |
TAGCTCTCCCTAACAAGACC+AGG | 0.606113 | 4.2:+20794114 | None:intergenic |
ACTGCATATATGTCCTGCAT+CGG | 0.608798 | 4.2:+20794534 | None:intergenic |
TGCATGTGGAGAGCTAGCAT+TGG | 0.609017 | 4.2:-20794249 | MS.gene28673:CDS |
TGATCCGAAGGCTTATATTG+AGG | 0.613318 | 4.2:-20792044 | MS.gene28673:intron |
CATCGTACACTAGAAAGAGC+AGG | 0.614986 | 4.2:-20793996 | MS.gene28673:CDS |
AAAACTGCGGGATGCACAAG+TGG | 0.616371 | 4.2:+20793453 | None:intergenic |
AGCAAAATCAGTCAGATGCA+GGG | 0.618278 | 4.2:-20794223 | MS.gene28673:CDS |
CAGAGTCTGATGGCCCCTTG+AGG | 0.619099 | 4.2:-20784182 | None:intergenic |
ATTGCTCCATGCAATCGGCT+GGG | 0.621411 | 4.2:+20784585 | None:intergenic |
GTCTCAAGTTGACCTTGCAA+GGG | 0.622912 | 4.2:-20793550 | MS.gene28673:CDS |
TGGGCTTTGCTTGCTGACCA+GGG | 0.624719 | 4.2:+20793730 | None:intergenic |
GCTAGCGAAAACTTTCACAA+AGG | 0.634191 | 4.2:-20794467 | MS.gene28673:CDS |
AAAGAAAGAACCTCCTCAAG+GGG | 0.634321 | 4.2:+20784169 | None:intergenic |
ATATGTTTCCACCAAAACTG+CGG | 0.642456 | 4.2:+20793440 | None:intergenic |
GTCTCCATCACATTATACCC+GGG | 0.643086 | 4.2:+20784260 | None:intergenic |
TTGTGTATGAGTGCACAAGA+TGG | 0.646764 | 4.2:-20794179 | MS.gene28673:CDS |
CTAGTGTACGATGAACAACC+CGG | 0.650208 | 4.2:+20794006 | None:intergenic |
GGTTTGCGAGCCTTGCTCTG+AGG | 0.654052 | 4.2:+20792235 | None:intergenic |
CTGTTGCCCGCAGAGATGGT+CGG | 0.657647 | 4.2:-20792114 | MS.gene28673:CDS |
AAGGATGTAGTTCAATCATG+TGG | 0.658916 | 4.2:-20794496 | MS.gene28673:CDS |
ATACACAATTCAGAGTCTGA+TGG | 0.661199 | 4.2:-20784192 | MS.gene28673:CDS |
CAGCGGTCCGACCATCTCTG+CGG | 0.665411 | 4.2:+20792107 | None:intergenic |
TGTAGTTCAATCATGTGGCG+AGG | 0.668343 | 4.2:-20794491 | MS.gene28673:CDS |
ATTGAACTACATCCTTCACT+GGG | 0.674087 | 4.2:+20794503 | None:intergenic |
GGTCCGGCATTCATAAAATG+GGG | 0.675314 | 4.2:-20793975 | MS.gene28673:CDS |
TGTGGGAGAATCTATCAGAA+GGG | 0.684154 | 4.2:-20793676 | MS.gene28673:CDS |
CCTAAGTGTGCACTCAGCAG+CGG | 0.686723 | 4.2:+20792090 | None:intergenic |
TTGAGCAATCATATGTACAG+AGG | 0.703226 | 4.2:+20794328 | None:intergenic |
ACATCGAGGAAAATTACATG+AGG | 0.705947 | 4.2:+20792196 | None:intergenic |
GGGAACTCGAGAAGGTGACG+CGG | 0.730457 | 4.2:-20784612 | MS.gene28673:CDS |
AATTACCTCTAAAACCAAGG+TGG | 0.739212 | 4.2:+20784499 | None:intergenic |
CAGCAGTCATGCCTACATCG+AGG | 0.745012 | 4.2:+20792182 | None:intergenic |
GTAGCTAAAACTATGCTCAG+GGG | 0.756366 | 4.2:+20793878 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 20784184 | 20795626 | 20784184 | ID=MS.gene28673 |
chr4.2 | mRNA | 20784184 | 20795626 | 20784184 | ID=MS.gene28673.t1;Parent=MS.gene28673 |
chr4.2 | exon | 20795619 | 20795626 | 20795619 | ID=MS.gene28673.t1.exon1;Parent=MS.gene28673.t1 |
chr4.2 | CDS | 20795619 | 20795626 | 20795619 | ID=cds.MS.gene28673.t1;Parent=MS.gene28673.t1 |
chr4.2 | exon | 20793413 | 20794673 | 20793413 | ID=MS.gene28673.t1.exon2;Parent=MS.gene28673.t1 |
chr4.2 | CDS | 20793413 | 20794673 | 20793413 | ID=cds.MS.gene28673.t1;Parent=MS.gene28673.t1 |
chr4.2 | exon | 20792045 | 20792311 | 20792045 | ID=MS.gene28673.t1.exon3;Parent=MS.gene28673.t1 |
chr4.2 | CDS | 20792045 | 20792311 | 20792045 | ID=cds.MS.gene28673.t1;Parent=MS.gene28673.t1 |
chr4.2 | exon | 20784505 | 20784660 | 20784505 | ID=MS.gene28673.t1.exon4;Parent=MS.gene28673.t1 |
chr4.2 | CDS | 20784505 | 20784660 | 20784505 | ID=cds.MS.gene28673.t1;Parent=MS.gene28673.t1 |
chr4.2 | exon | 20784184 | 20784303 | 20784184 | ID=MS.gene28673.t1.exon5;Parent=MS.gene28673.t1 |
chr4.2 | CDS | 20784184 | 20784303 | 20784184 | ID=cds.MS.gene28673.t1;Parent=MS.gene28673.t1 |
Gene Sequence |
Protein sequence |