Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28707.t1 | XP_013457317.1 | 87.6 | 388 | 47 | 1 | 1 | 387 | 1 | 388 | 4.60E-207 | 730.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28707.t1 | A0A072UQP9 | 87.6 | 388 | 47 | 1 | 1 | 387 | 1 | 388 | 3.3e-207 | 730.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053931 | MS.gene28707 | 0.824428 | 8.12E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene28707 | 0.809736 | 1.63E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28707.t1 | MTR_4g094550 | 87.629 | 388 | 47 | 1 | 1 | 387 | 1 | 388 | 0.0 | 714 |
| MS.gene28707.t1 | MTR_4g094562 | 82.895 | 380 | 65 | 0 | 1 | 380 | 1 | 380 | 0.0 | 666 |
| MS.gene28707.t1 | MTR_4g094570 | 82.632 | 380 | 66 | 0 | 1 | 380 | 1 | 380 | 0.0 | 666 |
| MS.gene28707.t1 | MTR_4g094548 | 81.748 | 389 | 69 | 2 | 1 | 387 | 1 | 389 | 0.0 | 661 |
| MS.gene28707.t1 | MTR_4g094555 | 80.879 | 387 | 74 | 0 | 1 | 387 | 1 | 387 | 0.0 | 658 |
| MS.gene28707.t1 | MTR_6g048350 | 78.158 | 380 | 83 | 0 | 1 | 380 | 1 | 380 | 0.0 | 632 |
| MS.gene28707.t1 | MTR_4g094560 | 82.682 | 358 | 52 | 1 | 23 | 380 | 23 | 370 | 0.0 | 624 |
| MS.gene28707.t1 | MTR_6g048310 | 79.310 | 377 | 73 | 2 | 4 | 380 | 3 | 374 | 0.0 | 611 |
| MS.gene28707.t1 | MTR_4g094562 | 78.378 | 296 | 64 | 0 | 1 | 296 | 1 | 296 | 5.36e-176 | 493 |
| MS.gene28707.t1 | MTR_2g030460 | 61.126 | 373 | 135 | 4 | 10 | 380 | 12 | 376 | 4.23e-173 | 489 |
| MS.gene28707.t1 | MTR_0083s0100 | 63.248 | 351 | 120 | 2 | 29 | 378 | 32 | 374 | 1.29e-168 | 478 |
| MS.gene28707.t1 | MTR_1g052640 | 59.269 | 383 | 142 | 5 | 1 | 378 | 1 | 374 | 1.23e-167 | 475 |
| MS.gene28707.t1 | MTR_2g030470 | 61.478 | 379 | 137 | 2 | 3 | 380 | 420 | 790 | 1.02e-166 | 487 |
| MS.gene28707.t1 | MTR_2g030470 | 61.022 | 372 | 136 | 2 | 10 | 380 | 15 | 378 | 3.22e-165 | 483 |
| MS.gene28707.t1 | MTR_4g094565 | 62.895 | 380 | 60 | 2 | 1 | 380 | 1 | 299 | 3.91e-163 | 461 |
| MS.gene28707.t1 | MTR_2g030480 | 56.919 | 383 | 136 | 3 | 3 | 384 | 5 | 359 | 7.00e-156 | 444 |
| MS.gene28707.t1 | MTR_2g030460 | 59.215 | 331 | 125 | 4 | 10 | 338 | 12 | 334 | 7.27e-148 | 422 |
| MS.gene28707.t1 | MTR_4g094565 | 71.678 | 286 | 53 | 1 | 1 | 286 | 1 | 258 | 2.36e-145 | 415 |
| MS.gene28707.t1 | MTR_1g052640 | 57.434 | 343 | 132 | 5 | 1 | 338 | 1 | 334 | 1.38e-143 | 411 |
| MS.gene28707.t1 | MTR_8g039300 | 45.619 | 388 | 190 | 6 | 1 | 380 | 1 | 375 | 1.21e-123 | 363 |
| MS.gene28707.t1 | MTR_1g052640 | 56.164 | 292 | 114 | 5 | 1 | 287 | 1 | 283 | 1.35e-117 | 343 |
| MS.gene28707.t1 | MTR_6g089930 | 42.416 | 389 | 201 | 6 | 1 | 380 | 1 | 375 | 2.93e-116 | 344 |
| MS.gene28707.t1 | MTR_6g090090 | 43.928 | 387 | 188 | 6 | 1 | 380 | 27 | 391 | 7.64e-116 | 344 |
| MS.gene28707.t1 | MTR_3g035040 | 44.094 | 381 | 192 | 6 | 8 | 380 | 8 | 375 | 2.47e-114 | 339 |
| MS.gene28707.t1 | MTR_1g035220 | 40.827 | 387 | 197 | 8 | 1 | 384 | 1 | 358 | 1.64e-101 | 305 |
| MS.gene28707.t1 | MTR_1g062750 | 42.678 | 239 | 122 | 4 | 58 | 287 | 2 | 234 | 1.37e-67 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28707.t1 | AT5G61820 | 55.645 | 372 | 144 | 6 | 14 | 371 | 15 | 379 | 5.68e-146 | 422 |
| MS.gene28707.t1 | AT5G61820 | 55.645 | 372 | 144 | 6 | 14 | 371 | 15 | 379 | 5.68e-146 | 422 |
Find 93 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTAAGATACACAATTAAA+TGG | 0.146736 | 4.3:+19297012 | MS.gene28707:CDS |
| TCCAGGTCCTAGCTCAAATT+TGG | 0.222916 | 4.3:-19296415 | None:intergenic |
| ACACCATGCTCAGGTTCTTT+TGG | 0.238296 | 4.3:+19296351 | MS.gene28707:CDS |
| GGAAATTACCTGTCCATATA+AGG | 0.243222 | 4.3:-19297606 | None:intergenic |
| GGAATTGGGTCCACCTTATA+TGG | 0.274259 | 4.3:+19297593 | MS.gene28707:CDS |
| CATCAACATTCAGGTGGAAT+TGG | 0.280512 | 4.3:+19297578 | MS.gene28707:CDS |
| AATGTTACAGTTGATGAATA+TGG | 0.303360 | 4.3:+19296888 | MS.gene28707:CDS |
| CATATCTCCTCATATCCTTC+TGG | 0.316534 | 4.3:-19296786 | None:intergenic |
| ACACAATTAAATGGGTTGAT+TGG | 0.331561 | 4.3:+19297021 | MS.gene28707:CDS |
| CCAGGTCCTAGCTCAAATTT+GGG | 0.347633 | 4.3:-19296414 | None:intergenic |
| GCAATACTCTTGCTGTTGTT+TGG | 0.348458 | 4.3:+19296327 | MS.gene28707:CDS |
| CACAATTAAATGGGTTGATT+GGG | 0.351218 | 4.3:+19297022 | MS.gene28707:CDS |
| CAGAAGGATATGAGGAGATA+TGG | 0.353403 | 4.3:+19296787 | MS.gene28707:CDS |
| AGGAACGGTGACCGATATTC+CGG | 0.357488 | 4.3:+19296725 | MS.gene28707:CDS |
| ATCTTTAGAGAGCCTGGTTT+AGG | 0.358338 | 4.3:-19297898 | None:intergenic |
| TCAATACCAAGTTATGGAAA+TGG | 0.370676 | 4.3:+19297823 | MS.gene28707:CDS |
| ACAAACCATAAGGAGGAAAA+TGG | 0.374430 | 4.3:+19297488 | MS.gene28707:CDS |
| GGTGTTGCTCATCAACATTC+AGG | 0.386508 | 4.3:+19297569 | MS.gene28707:CDS |
| AGAGCCTGGTTTAGGATAAC+AGG | 0.389896 | 4.3:-19297890 | None:intergenic |
| TAGGTTTCATGGAGAGGTAT+AGG | 0.398215 | 4.3:-19296534 | None:intergenic |
| AATGATGGAGATAGGTTTCA+TGG | 0.398235 | 4.3:-19296545 | None:intergenic |
| TCCGAATGGATCCGGAATAT+CGG | 0.398280 | 4.3:-19296736 | None:intergenic |
| ATGAAACCTATCTCCATCAT+TGG | 0.404073 | 4.3:+19296547 | MS.gene28707:CDS |
| TCAATTATATATATCTTAAC+AGG | 0.405782 | 4.3:-19297059 | None:intergenic |
| ACTGGTGGCTATGTGATCTA+TGG | 0.406576 | 4.3:+19297548 | MS.gene28707:CDS |
| TGTTCTTCAATACCAAGTTA+TGG | 0.411053 | 4.3:+19297817 | MS.gene28707:CDS |
| AACAACCCAATGATGGAGAT+AGG | 0.418621 | 4.3:-19296553 | None:intergenic |
| ACATAGCCACCAGTTTGAAA+TGG | 0.422102 | 4.3:-19297539 | None:intergenic |
| CGCGGTGTGGAGGATAAGTT+AGG | 0.426766 | 4.3:+19296837 | MS.gene28707:CDS |
| ATCTCTATTCCGAATGGATC+CGG | 0.432103 | 4.3:-19296744 | None:intergenic |
| CATCAACTGTAACATTATAA+AGG | 0.435686 | 4.3:-19296881 | None:intergenic |
| TCAATAAGGTCAGATTATAA+AGG | 0.436435 | 4.3:+19296915 | MS.gene28707:CDS |
| TTGTTTGGCACACCATGCTC+AGG | 0.437320 | 4.3:+19296342 | MS.gene28707:CDS |
| TCATTTATCTTTAGAGAGCC+TGG | 0.437593 | 4.3:-19297904 | None:intergenic |
| ATCAACATTCAGGTGGAATT+GGG | 0.446521 | 4.3:+19297579 | MS.gene28707:CDS |
| CCCAAATTTGAGCTAGGACC+TGG | 0.447991 | 4.3:+19296414 | MS.gene28707:CDS |
| CTTAAGATACACAATTAAAT+GGG | 0.453280 | 4.3:+19297013 | MS.gene28707:CDS |
| TTGATTGCTATATGACCTCT+TGG | 0.453879 | 4.3:-19296474 | None:intergenic |
| AACGGACAGTACTTTGGGCT+TGG | 0.458369 | 4.3:+19296690 | MS.gene28707:CDS |
| CTCCACACCGCGCGTATCAA+TGG | 0.458833 | 4.3:-19296826 | None:intergenic |
| TCGTTTCCATTTCCATAACT+TGG | 0.461468 | 4.3:-19297829 | None:intergenic |
| AAACTATCAGATGATTCAAA+AGG | 0.461623 | 4.3:+19297098 | MS.gene28707:CDS |
| CTTAAGTAGAGGCTTCTCAT+TGG | 0.462700 | 4.3:-19296996 | None:intergenic |
| AATGAGACAGGCTACGTTGT+AGG | 0.462721 | 4.3:+19297859 | MS.gene28707:CDS |
| TATGGAAATGGAAACGAAGC+TGG | 0.465420 | 4.3:+19297835 | MS.gene28707:CDS |
| ATGAATATGGAAGGTCAATA+AGG | 0.466178 | 4.3:+19296901 | MS.gene28707:CDS |
| ACCGATATTCCGGATCCATT+CGG | 0.467121 | 4.3:+19296735 | MS.gene28707:CDS |
| CATAGCCACCAGTTTGAAAT+GGG | 0.475271 | 4.3:-19297538 | None:intergenic |
| GATCCATTCGGAATAGAGAT+AGG | 0.487132 | 4.3:+19296747 | MS.gene28707:CDS |
| TGAAACCTATCTCCATCATT+GGG | 0.499779 | 4.3:+19296548 | MS.gene28707:CDS |
| ACAAGTCTCCCATTTCAAAC+TGG | 0.501575 | 4.3:+19297530 | MS.gene28707:CDS |
| ATCTTTCAACAACCCAATGA+TGG | 0.507144 | 4.3:-19296560 | None:intergenic |
| TATCCTTCTGGAATATCTGC+AGG | 0.507928 | 4.3:-19296774 | None:intergenic |
| TTATACACAGTGCAAGTTGA+AGG | 0.508751 | 4.3:+19296959 | MS.gene28707:CDS |
| AGATATTCCAGAAGGATATG+AGG | 0.514011 | 4.3:+19296779 | MS.gene28707:CDS |
| ATCTTGCAGCACAAACCATA+AGG | 0.514953 | 4.3:+19297478 | MS.gene28707:CDS |
| TATCTATTGATAACTGATCC+AGG | 0.514983 | 4.3:-19296432 | None:intergenic |
| GTCACACACATAAGAAATGA+TGG | 0.520359 | 4.3:+19296600 | MS.gene28707:CDS |
| GGCTCTCTAAAGATAAATGA+TGG | 0.527986 | 4.3:+19297907 | MS.gene28707:CDS |
| TGGGTCCACCTTATATGGAC+AGG | 0.544628 | 4.3:+19297598 | MS.gene28707:CDS |
| AACGAAGCTGGAAATGAGAC+AGG | 0.557293 | 4.3:+19297847 | MS.gene28707:CDS |
| ACACAGTGCAAGTTGAAGGA+AGG | 0.578271 | 4.3:+19296963 | MS.gene28707:CDS |
| TTGTTATTTAGACACAGAGA+TGG | 0.578958 | 4.3:+19299175 | MS.gene28707:intron |
| TTACCTATCTCTATTCCGAA+TGG | 0.583103 | 4.3:-19296750 | None:intergenic |
| TGGAGATAGGTTTCATGGAG+AGG | 0.587595 | 4.3:-19296540 | None:intergenic |
| GAACTCAGATCATGATTGCA+AGG | 0.588027 | 4.3:+19297124 | MS.gene28707:CDS |
| TAATTGTGTATCTTAAGTAG+AGG | 0.588300 | 4.3:-19297007 | None:intergenic |
| TGGATCTGAAACACGAGGAA+CGG | 0.597554 | 4.3:+19296710 | MS.gene28707:CDS |
| TGCCATTGATACGCGCGGTG+TGG | 0.598065 | 4.3:+19296824 | MS.gene28707:CDS |
| CATTGATACGCGCGGTGTGG+AGG | 0.606928 | 4.3:+19296827 | MS.gene28707:CDS |
| TCCACCTGTTATCCTAAACC+AGG | 0.607854 | 4.3:+19297886 | MS.gene28707:CDS |
| TTCCCAAAAGAACCTGAGCA+TGG | 0.611307 | 4.3:-19296354 | None:intergenic |
| GCTGAAGTAGTTGATGAAGC+TGG | 0.614547 | 4.3:+19296507 | MS.gene28707:CDS |
| ATAAGGTCAGATTATAAAGG+AGG | 0.616158 | 4.3:+19296918 | MS.gene28707:CDS |
| ATGGTTGTGTTCATGTGAAG+AGG | 0.619686 | 4.3:+19297507 | MS.gene28707:CDS |
| AGGATATGAGGAGATATGGA+TGG | 0.620598 | 4.3:+19296791 | MS.gene28707:CDS |
| AACAGCAAGAGTATTGCCAA+TGG | 0.620972 | 4.3:-19296321 | None:intergenic |
| AGGAACAGTGGTATATGCCA+AGG | 0.623948 | 4.3:+19296660 | MS.gene28707:CDS |
| AATTACCTGTCCATATAAGG+TGG | 0.625077 | 4.3:-19297603 | None:intergenic |
| GCGGTGTGGAGGATAAGTTA+GGG | 0.627173 | 4.3:+19296838 | MS.gene28707:CDS |
| AGTCTCCCATTTCAAACTGG+TGG | 0.630697 | 4.3:+19297533 | MS.gene28707:CDS |
| TTACAGTTGATGAATATGGA+AGG | 0.632054 | 4.3:+19296892 | MS.gene28707:CDS |
| ACATAAGAAATGATGGCCAA+AGG | 0.633089 | 4.3:+19296607 | MS.gene28707:CDS |
| GGGCTTGGATCTGAAACACG+AGG | 0.638622 | 4.3:+19296705 | MS.gene28707:CDS |
| GCCTGGTTTAGGATAACAGG+TGG | 0.641140 | 4.3:-19297887 | None:intergenic |
| AATCCTGCAGATATTCCAGA+AGG | 0.641795 | 4.3:+19296771 | MS.gene28707:CDS |
| GTTGCTCATCAACATTCAGG+TGG | 0.654778 | 4.3:+19297572 | MS.gene28707:CDS |
| ATTCTGATAATGTTATGCTG+AGG | 0.659236 | 4.3:+19296640 | MS.gene28707:CDS |
| CAGGTCCTAGCTCAAATTTG+GGG | 0.677421 | 4.3:-19296413 | None:intergenic |
| TTGCAGCACAAACCATAAGG+AGG | 0.679495 | 4.3:+19297481 | MS.gene28707:CDS |
| AGGTCCTAGCTCAAATTTGG+GGG | 0.688231 | 4.3:-19296412 | None:intergenic |
| AATGTTATGCTGAGGAACAG+TGG | 0.703854 | 4.3:+19296648 | MS.gene28707:CDS |
| GTTCATGCCATTGATACGCG+CGG | 0.723014 | 4.3:+19296819 | MS.gene28707:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATAAATAAAATAATA+AGG | + | chr4.3:19298849-19298868 | MS.gene28707:intron | 0.0% |
| !! | TTATATTAAAATCCAAAATA+CGG | + | chr4.3:19297251-19297270 | MS.gene28707:intron | 10.0% |
| !!! | AAATACATAATTTCTATTTT+TGG | - | chr4.3:19299004-19299023 | None:intergenic | 10.0% |
| !!! | TAAGAAAATATTCATTTTTT+AGG | + | chr4.3:19298420-19298439 | MS.gene28707:intron | 10.0% |
| !! | ATTAATTAAGCAGATATATT+TGG | - | chr4.3:19298579-19298598 | None:intergenic | 15.0% |
| !! | TCAATTATATATATCTTAAC+AGG | - | chr4.3:19297062-19297081 | None:intergenic | 15.0% |
| !!! | AAATTTGTATAATTTGTGAA+CGG | - | chr4.3:19297212-19297231 | None:intergenic | 15.0% |
| !! | ACTTAAGATACACAATTAAA+TGG | + | chr4.3:19297012-19297031 | MS.gene28707:CDS | 20.0% |
| !! | ATACAAAAACTTTCTGTATT+TGG | + | chr4.3:19298209-19298228 | MS.gene28707:intron | 20.0% |
| !! | CTTAAGATACACAATTAAAT+GGG | + | chr4.3:19297013-19297032 | MS.gene28707:CDS | 20.0% |
| !! | TAAGTAAGAATAAGAATGAA+CGG | + | chr4.3:19298727-19298746 | MS.gene28707:intron | 20.0% |
| !! | TAGCAATAATTATTTAGCAA+AGG | + | chr4.3:19298913-19298932 | MS.gene28707:intron | 20.0% |
| !! | TCACATATTTGTAATATATG+TGG | + | chr4.3:19298103-19298122 | MS.gene28707:intron | 20.0% |
| !!! | ATAACATTATCAGAATTTTC+AGG | - | chr4.3:19296636-19296655 | None:intergenic | 20.0% |
| !!! | ATTATTGCTATTTTCAAAGT+TGG | - | chr4.3:19298903-19298922 | None:intergenic | 20.0% |
| !!! | TACGGTTATTTTTAAATACT+TGG | + | chr4.3:19297642-19297661 | MS.gene28707:intron | 20.0% |
| !!! | TATTTTCTTATATTTGAGAC+CGG | - | chr4.3:19298410-19298429 | None:intergenic | 20.0% |
| ! | AAACTATCAGATGATTCAAA+AGG | + | chr4.3:19297098-19297117 | MS.gene28707:CDS | 25.0% |
| ! | AATGGAAAAACAAAATGTCT+AGG | - | chr4.3:19296306-19296325 | None:intergenic | 25.0% |
| ! | AGACAAACAAACTACAAATT+TGG | - | chr4.3:19297360-19297379 | None:intergenic | 25.0% |
| ! | ATATGCCAAGGAAATAAAAA+CGG | + | chr4.3:19296672-19296691 | MS.gene28707:CDS | 25.0% |
| ! | CATCAACTGTAACATTATAA+AGG | - | chr4.3:19296884-19296903 | None:intergenic | 25.0% |
| ! | TAATTGTGTATCTTAAGTAG+AGG | - | chr4.3:19297010-19297029 | None:intergenic | 25.0% |
| ! | TATTTGTAATATATGTGGAG+TGG | + | chr4.3:19298108-19298127 | MS.gene28707:intron | 25.0% |
| ! | TCAATAAGGTCAGATTATAA+AGG | + | chr4.3:19296915-19296934 | MS.gene28707:CDS | 25.0% |
| ! | TTATATGATACAAGAAAGAG+TGG | - | chr4.3:19298376-19298395 | None:intergenic | 25.0% |
| ! | TTATTTAGCAAAGGTCAAAT+TGG | + | chr4.3:19298922-19298941 | MS.gene28707:intron | 25.0% |
| ! | TTTACTATAATACCCAACAT+TGG | - | chr4.3:19297417-19297436 | None:intergenic | 25.0% |
| ! | TTTCCAAAAGTTACAACTTA+CGG | + | chr4.3:19297624-19297643 | MS.gene28707:intron | 25.0% |
| !! | AGTGTGTTTTATGACATTTA+TGG | + | chr4.3:19297766-19297785 | MS.gene28707:intron | 25.0% |
| !! | TACGTAGTGTGTAATTATTT+TGG | + | chr4.3:19298344-19298363 | MS.gene28707:intron | 25.0% |
| !!! | AATGTTACAGTTGATGAATA+TGG | + | chr4.3:19296888-19296907 | MS.gene28707:CDS | 25.0% |
| !!! | CATTTATGGATTATGTTTTC+AGG | + | chr4.3:19297780-19297799 | MS.gene28707:intron | 25.0% |
| !!! | TACTCGTTCTTCATTTTTTT+TGG | + | chr4.3:19298044-19298063 | MS.gene28707:intron | 25.0% |
| !!! | TAGACATTTTGTTTTTCCAT+TGG | + | chr4.3:19296305-19296324 | MS.gene28707:CDS | 25.0% |
| !!! | TATATGATTGGTCTAAAAAG+AGG | + | chr4.3:19298156-19298175 | MS.gene28707:intron | 25.0% |
| !!! | TATGATATTGATTTTCCAAG+AGG | + | chr4.3:19296459-19296478 | MS.gene28707:CDS | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+AGG | + | chr4.3:19298519-19298538 | MS.gene28707:intron | 25.0% |
| AAAACTTTCTGTATTTGGCT+TGG | + | chr4.3:19298214-19298233 | MS.gene28707:intron | 30.0% | |
| AATAAAAACGGACAGTACTT+TGG | + | chr4.3:19296684-19296703 | MS.gene28707:CDS | 30.0% | |
| ACAAAGTTGTCGATAGAAAT+AGG | - | chr4.3:19299159-19299178 | None:intergenic | 30.0% | |
| ATAAAAACGGACAGTACTTT+GGG | + | chr4.3:19296685-19296704 | MS.gene28707:CDS | 30.0% | |
| ATAAGGTCAGATTATAAAGG+AGG | + | chr4.3:19296918-19296937 | MS.gene28707:CDS | 30.0% | |
| ATGAATATGGAAGGTCAATA+AGG | + | chr4.3:19296901-19296920 | MS.gene28707:CDS | 30.0% | |
| ATGTAACACTATTCCAATGT+TGG | + | chr4.3:19297401-19297420 | MS.gene28707:intron | 30.0% | |
| CAAAGTTGTCGATAGAAATA+GGG | - | chr4.3:19299158-19299177 | None:intergenic | 30.0% | |
| CTTTCATTGAAAAATGCGTA+TGG | + | chr4.3:19298704-19298723 | MS.gene28707:intron | 30.0% | |
| GGTATTATAGTAAAGCAATG+TGG | + | chr4.3:19297423-19297442 | MS.gene28707:intron | 30.0% | |
| TAAGAATAAGAATGAACGGA+AGG | + | chr4.3:19298731-19298750 | MS.gene28707:intron | 30.0% | |
| TCAATACCAAGTTATGGAAA+TGG | + | chr4.3:19297823-19297842 | MS.gene28707:CDS | 30.0% | |
| TCATATAATAATACTCCCTC+CGG | + | chr4.3:19298388-19298407 | MS.gene28707:intron | 30.0% | |
| TGTAACACTATTCCAATGTT+GGG | + | chr4.3:19297402-19297421 | MS.gene28707:intron | 30.0% | |
| TGTTCTTCAATACCAAGTTA+TGG | + | chr4.3:19297817-19297836 | MS.gene28707:CDS | 30.0% | |
| ! | AATGTGGATTTCTTTGTTTC+AGG | + | chr4.3:19297439-19297458 | MS.gene28707:intron | 30.0% |
| ! | ATATTCTTCGAATTTTCTCG+AGG | + | chr4.3:19297702-19297721 | MS.gene28707:intron | 30.0% |
| ! | ATTCTGATAATGTTATGCTG+AGG | + | chr4.3:19296640-19296659 | MS.gene28707:CDS | 30.0% |
| ! | TAACCGTAAGTTGTAACTTT+TGG | - | chr4.3:19297630-19297649 | None:intergenic | 30.0% |
| ! | TATCTATTGATAACTGATCC+AGG | - | chr4.3:19296435-19296454 | None:intergenic | 30.0% |
| ! | TTCTTATATTTGAGACAGGA+GGG | + | chr4.3:19298523-19298542 | MS.gene28707:intron | 30.0% |
| ! | TTTCTTATATTTGAGACAGG+AGG | + | chr4.3:19298522-19298541 | MS.gene28707:intron | 30.0% |
| !! | AATGTCTAAAGTGTTGATGT+GGG | - | chr4.3:19298023-19298042 | None:intergenic | 30.0% |
| !! | ACACAATTAAATGGGTTGAT+TGG | + | chr4.3:19297021-19297040 | MS.gene28707:CDS | 30.0% |
| !! | ATTATGTTTTCAGGATGAGA+GGG | + | chr4.3:19297789-19297808 | MS.gene28707:intron | 30.0% |
| !! | CACAATTAAATGGGTTGATT+GGG | + | chr4.3:19297022-19297041 | MS.gene28707:CDS | 30.0% |
| !! | TTACAGTTGATGAATATGGA+AGG | + | chr4.3:19296892-19296911 | MS.gene28707:CDS | 30.0% |
| !! | TTGTTATTTAGACACAGAGA+TGG | + | chr4.3:19299175-19299194 | MS.gene28707:intron | 30.0% |
| AAATACGGAGCTTGAAATCT+AGG | + | chr4.3:19297266-19297285 | MS.gene28707:intron | 35.0% | |
| AACGAACTTCAATTCAGCAT+AGG | + | chr4.3:19298603-19298622 | MS.gene28707:intron | 35.0% | |
| AAGGAACACATTGGAGTAAT+GGG | + | chr4.3:19297967-19297986 | MS.gene28707:intron | 35.0% | |
| AATTACCTGTCCATATAAGG+TGG | - | chr4.3:19297606-19297625 | None:intergenic | 35.0% | |
| ACAAACCATAAGGAGGAAAA+TGG | + | chr4.3:19297488-19297507 | MS.gene28707:CDS | 35.0% | |
| ACATAAGAAATGATGGCCAA+AGG | + | chr4.3:19296607-19296626 | MS.gene28707:CDS | 35.0% | |
| ACGAACTTCAATTCAGCATA+GGG | + | chr4.3:19298604-19298623 | MS.gene28707:intron | 35.0% | |
| AGATATTCCAGAAGGATATG+AGG | + | chr4.3:19296779-19296798 | MS.gene28707:CDS | 35.0% | |
| AGTCGATTAGATTAAGAGGA+AGG | + | chr4.3:19298757-19298776 | MS.gene28707:intron | 35.0% | |
| ATCAACATTCAGGTGGAATT+GGG | + | chr4.3:19297579-19297598 | MS.gene28707:CDS | 35.0% | |
| ATCTTTCAACAACCCAATGA+TGG | - | chr4.3:19296563-19296582 | None:intergenic | 35.0% | |
| ATGAAACCTATCTCCATCAT+TGG | + | chr4.3:19296547-19296566 | MS.gene28707:CDS | 35.0% | |
| GATGAGTCGATTAGATTAAG+AGG | + | chr4.3:19298753-19298772 | MS.gene28707:intron | 35.0% | |
| GGAAATTACCTGTCCATATA+AGG | - | chr4.3:19297609-19297628 | None:intergenic | 35.0% | |
| GTAGCGAAGTGATATATGAT+TGG | + | chr4.3:19298144-19298163 | MS.gene28707:intron | 35.0% | |
| GTCACACACATAAGAAATGA+TGG | + | chr4.3:19296600-19296619 | MS.gene28707:CDS | 35.0% | |
| GTCTAAATACAACAACACCA+AGG | + | chr4.3:19297948-19297967 | MS.gene28707:intron | 35.0% | |
| TCGTTTCCATTTCCATAACT+TGG | - | chr4.3:19297832-19297851 | None:intergenic | 35.0% | |
| TGAAACCTATCTCCATCATT+GGG | + | chr4.3:19296548-19296567 | MS.gene28707:CDS | 35.0% | |
| TGATTGGAGAAGATCTTCTT+TGG | + | chr4.3:19298678-19298697 | MS.gene28707:intron | 35.0% | |
| TTACCTATCTCTATTCCGAA+TGG | - | chr4.3:19296753-19296772 | None:intergenic | 35.0% | |
| TTCGAAGAATATGTCTCTTG+AGG | - | chr4.3:19297694-19297713 | None:intergenic | 35.0% | |
| TTGATTGCTATATGACCTCT+TGG | - | chr4.3:19296477-19296496 | None:intergenic | 35.0% | |
| ! | AATGATGGAGATAGGTTTCA+TGG | - | chr4.3:19296548-19296567 | None:intergenic | 35.0% |
| ! | AATGGGACTTTTCTACCTAT+TGG | + | chr4.3:19297984-19298003 | MS.gene28707:intron | 35.0% |
| ! | AGATTTCAAGCTCCGTATTT+TGG | - | chr4.3:19297266-19297285 | None:intergenic | 35.0% |
| ! | GGCTCTCTAAAGATAAATGA+TGG | + | chr4.3:19297907-19297926 | MS.gene28707:CDS | 35.0% |
| ! | TCATTTATCTTTAGAGAGCC+TGG | - | chr4.3:19297907-19297926 | None:intergenic | 35.0% |
| ! | TTATACACAGTGCAAGTTGA+AGG | + | chr4.3:19296959-19296978 | MS.gene28707:CDS | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | - | chr4.3:19298406-19298425 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | - | chr4.3:19298407-19298426 | None:intergenic | 35.0% |
| !! | AAGTTGAAGGAAGGTTTTGA+AGG | + | chr4.3:19296972-19296991 | MS.gene28707:CDS | 35.0% |
| !! | ACTGTCCGTTTTTATTTCCT+TGG | - | chr4.3:19296680-19296699 | None:intergenic | 35.0% |
| !! | ATAGACTGTTGGTTCAAGAT+CGG | - | chr4.3:19297297-19297316 | None:intergenic | 35.0% |
| !! | GAATGTCTAAAGTGTTGATG+TGG | - | chr4.3:19298024-19298043 | None:intergenic | 35.0% |
| !! | GATTATGTTTTCAGGATGAG+AGG | + | chr4.3:19297788-19297807 | MS.gene28707:intron | 35.0% |
| AACAACACCAAGGAACACAT+TGG | + | chr4.3:19297958-19297977 | MS.gene28707:intron | 40.0% | |
| AATCCTGCAGATATTCCAGA+AGG | + | chr4.3:19296771-19296790 | MS.gene28707:CDS | 40.0% | |
| AATGTTATGCTGAGGAACAG+TGG | + | chr4.3:19296648-19296667 | MS.gene28707:CDS | 40.0% | |
| ACAAGTCTCCCATTTCAAAC+TGG | + | chr4.3:19297530-19297549 | MS.gene28707:CDS | 40.0% | |
| ACATAGCCACCAGTTTGAAA+TGG | - | chr4.3:19297542-19297561 | None:intergenic | 40.0% | |
| AGGATATGAGGAGATATGGA+TGG | + | chr4.3:19296791-19296810 | MS.gene28707:CDS | 40.0% | |
| ATCTCTATTCCGAATGGATC+CGG | - | chr4.3:19296747-19296766 | None:intergenic | 40.0% | |
| ATCTTGCAGCACAAACCATA+AGG | + | chr4.3:19297478-19297497 | MS.gene28707:CDS | 40.0% | |
| ATGGTTGTGTTCATGTGAAG+AGG | + | chr4.3:19297507-19297526 | MS.gene28707:CDS | 40.0% | |
| CAAGGAACACATTGGAGTAA+TGG | + | chr4.3:19297966-19297985 | MS.gene28707:intron | 40.0% | |
| CAGAAGGATATGAGGAGATA+TGG | + | chr4.3:19296787-19296806 | MS.gene28707:CDS | 40.0% | |
| CATATCTCCTCATATCCTTC+TGG | - | chr4.3:19296789-19296808 | None:intergenic | 40.0% | |
| CATCAACATTCAGGTGGAAT+TGG | + | chr4.3:19297578-19297597 | MS.gene28707:CDS | 40.0% | |
| CATTACTCCAATGTGTTCCT+TGG | - | chr4.3:19297968-19297987 | None:intergenic | 40.0% | |
| CGATTAGATTAAGAGGAAGG+AGG | + | chr4.3:19298760-19298779 | MS.gene28707:intron | 40.0% | |
| CTACGTGTATCACTAGAACA+CGG | - | chr4.3:19298290-19298309 | None:intergenic | 40.0% | |
| CTTAAGTAGAGGCTTCTCAT+TGG | - | chr4.3:19296999-19297018 | None:intergenic | 40.0% | |
| GAACTCAGATCATGATTGCA+AGG | + | chr4.3:19297124-19297143 | MS.gene28707:CDS | 40.0% | |
| GATCCATTCGGAATAGAGAT+AGG | + | chr4.3:19296747-19296766 | MS.gene28707:CDS | 40.0% | |
| TATGGAAATGGAAACGAAGC+TGG | + | chr4.3:19297835-19297854 | MS.gene28707:CDS | 40.0% | |
| TTCACTCAGAACGACTAACT+AGG | - | chr4.3:19298798-19298817 | None:intergenic | 40.0% | |
| ! | AACAACCCAATGATGGAGAT+AGG | - | chr4.3:19296556-19296575 | None:intergenic | 40.0% |
| ! | AAGGCTGCTTCTTTCTAGAA+AGG | + | chr4.3:19298868-19298887 | MS.gene28707:intron | 40.0% |
| ! | AGGCTGCTTCTTTCTAGAAA+GGG | + | chr4.3:19298869-19298888 | MS.gene28707:intron | 40.0% |
| ! | ATATGTGGAGTGGAGTGTTA+TGG | + | chr4.3:19298118-19298137 | MS.gene28707:intron | 40.0% |
| ! | ATCTTTAGAGAGCCTGGTTT+AGG | - | chr4.3:19297901-19297920 | None:intergenic | 40.0% |
| ! | CACAACCATTTTCCTCCTTA+TGG | - | chr4.3:19297496-19297515 | None:intergenic | 40.0% |
| ! | CATAGCCACCAGTTTGAAAT+GGG | - | chr4.3:19297541-19297560 | None:intergenic | 40.0% |
| ! | TAGGTTTCATGGAGAGGTAT+AGG | - | chr4.3:19296537-19296556 | None:intergenic | 40.0% |
| !! | AACAGCAAGAGTATTGCCAA+TGG | - | chr4.3:19296324-19296343 | None:intergenic | 40.0% |
| !! | CAGAATTTTCAGGCATCCTT+TGG | - | chr4.3:19296626-19296645 | None:intergenic | 40.0% |
| !! | GCAATACTCTTGCTGTTGTT+TGG | + | chr4.3:19296327-19296346 | MS.gene28707:CDS | 40.0% |
| !! | TATCCTTCTGGAATATCTGC+AGG | - | chr4.3:19296777-19296796 | None:intergenic | 40.0% |
| !! | TATTTGGCTTGGCTAGCTAT+AGG | + | chr4.3:19298225-19298244 | MS.gene28707:intron | 40.0% |
| AACGAAGCTGGAAATGAGAC+AGG | + | chr4.3:19297847-19297866 | MS.gene28707:CDS | 45.0% | |
| AATGAGACAGGCTACGTTGT+AGG | + | chr4.3:19297859-19297878 | MS.gene28707:CDS | 45.0% | |
| ACCGATATTCCGGATCCATT+CGG | + | chr4.3:19296735-19296754 | MS.gene28707:CDS | 45.0% | |
| ACGCAATCGACATAGACTGT+TGG | - | chr4.3:19297308-19297327 | None:intergenic | 45.0% | |
| ACTGGTGGCTATGTGATCTA+TGG | + | chr4.3:19297548-19297567 | MS.gene28707:CDS | 45.0% | |
| AGGAACAGTGGTATATGCCA+AGG | + | chr4.3:19296660-19296679 | MS.gene28707:CDS | 45.0% | |
| AGGTCCTAGCTCAAATTTGG+GGG | - | chr4.3:19296415-19296434 | None:intergenic | 45.0% | |
| AGTCTCCCATTTCAAACTGG+TGG | + | chr4.3:19297533-19297552 | MS.gene28707:CDS | 45.0% | |
| CACTGCATTGCATGCATGAT+TGG | + | chr4.3:19298662-19298681 | MS.gene28707:intron | 45.0% | |
| CAGGTCCTAGCTCAAATTTG+GGG | - | chr4.3:19296416-19296435 | None:intergenic | 45.0% | |
| CCAGGTCCTAGCTCAAATTT+GGG | - | chr4.3:19296417-19296436 | None:intergenic | 45.0% | |
| CTTCAATTCAGCATAGGGAC+CGG | + | chr4.3:19298609-19298628 | MS.gene28707:intron | 45.0% | |
| GATTAAGAGGAAGGAGGAGT+AGG | + | chr4.3:19298766-19298785 | MS.gene28707:intron | 45.0% | |
| GGAATTGGGTCCACCTTATA+TGG | + | chr4.3:19297593-19297612 | MS.gene28707:CDS | 45.0% | |
| GGGTCATGATATGTGTCTTG+AGG | - | chr4.3:19299138-19299157 | None:intergenic | 45.0% | |
| GTTGCTCATCAACATTCAGG+TGG | + | chr4.3:19297572-19297591 | MS.gene28707:CDS | 45.0% | |
| TCCACCTGTTATCCTAAACC+AGG | + | chr4.3:19297886-19297905 | MS.gene28707:CDS | 45.0% | |
| TCCAGGTCCTAGCTCAAATT+TGG | - | chr4.3:19296418-19296437 | None:intergenic | 45.0% | |
| TCCGAATGGATCCGGAATAT+CGG | - | chr4.3:19296739-19296758 | None:intergenic | 45.0% | |
| TGGAGATAGGTTTCATGGAG+AGG | - | chr4.3:19296543-19296562 | None:intergenic | 45.0% | |
| TGTAGAGTCTCGAGAATGCA+AGG | + | chr4.3:19297331-19297350 | MS.gene28707:intron | 45.0% | |
| TTCCCAAAAGAACCTGAGCA+TGG | - | chr4.3:19296357-19296376 | None:intergenic | 45.0% | |
| TTGCAGCACAAACCATAAGG+AGG | + | chr4.3:19297481-19297500 | MS.gene28707:CDS | 45.0% | |
| TTGTCCCCCAAATTTGAGCT+AGG | + | chr4.3:19296408-19296427 | MS.gene28707:CDS | 45.0% | |
| ! | ACACAGTGCAAGTTGAAGGA+AGG | + | chr4.3:19296963-19296982 | MS.gene28707:CDS | 45.0% |
| ! | ACACCATGCTCAGGTTCTTT+TGG | + | chr4.3:19296351-19296370 | MS.gene28707:CDS | 45.0% |
| ! | AGAGCCTGGTTTAGGATAAC+AGG | - | chr4.3:19297893-19297912 | None:intergenic | 45.0% |
| ! | CACCATGCTCAGGTTCTTTT+GGG | + | chr4.3:19296352-19296371 | MS.gene28707:CDS | 45.0% |
| ! | GGGACTTTTCTACCTATTGG+TGG | + | chr4.3:19297987-19298006 | MS.gene28707:intron | 45.0% |
| ! | TGGATCTGAAACACGAGGAA+CGG | + | chr4.3:19296710-19296729 | MS.gene28707:CDS | 45.0% |
| !! | GCTGAAGTAGTTGATGAAGC+TGG | + | chr4.3:19296507-19296526 | MS.gene28707:CDS | 45.0% |
| !! | GGTGTTGCTCATCAACATTC+AGG | + | chr4.3:19297569-19297588 | MS.gene28707:CDS | 45.0% |
| !!! | TTTGTAATATTATTATTTTT+TGG | + | chr4.3:19298310-19298329 | MS.gene28707:intron | 5.0% |
| AACGGACAGTACTTTGGGCT+TGG | + | chr4.3:19296690-19296709 | MS.gene28707:CDS | 50.0% | |
| AGGAACGGTGACCGATATTC+CGG | + | chr4.3:19296725-19296744 | MS.gene28707:CDS | 50.0% | |
| AGTGAAGCTGAGGAGGTTCT+TGG | + | chr4.3:19298812-19298831 | MS.gene28707:intron | 50.0% | |
| CCCAAATTTGAGCTAGGACC+TGG | + | chr4.3:19296414-19296433 | MS.gene28707:CDS | 50.0% | |
| GCGGTGTGGAGGATAAGTTA+GGG | + | chr4.3:19296838-19296857 | MS.gene28707:CDS | 50.0% | |
| GTTCATGCCATTGATACGCG+CGG | + | chr4.3:19296819-19296838 | MS.gene28707:CDS | 50.0% | |
| TGGGTCCACCTTATATGGAC+AGG | + | chr4.3:19297598-19297617 | MS.gene28707:CDS | 50.0% | |
| TTGTTTGGCACACCATGCTC+AGG | + | chr4.3:19296342-19296361 | MS.gene28707:CDS | 50.0% | |
| ! | AGTCGTTCTGAGTGAAGCTG+AGG | + | chr4.3:19298802-19298821 | MS.gene28707:intron | 50.0% |
| ! | GCCTGGTTTAGGATAACAGG+TGG | - | chr4.3:19297890-19297909 | None:intergenic | 50.0% |
| CGCGGTGTGGAGGATAAGTT+AGG | + | chr4.3:19296837-19296856 | MS.gene28707:CDS | 55.0% | |
| GGAGCTGTTCTGCCACCAAT+AGG | - | chr4.3:19298002-19298021 | None:intergenic | 55.0% | |
| TAGAGAGCAAGCCACATCCG+TGG | - | chr4.3:19298635-19298654 | None:intergenic | 55.0% | |
| ! | CGTTCTGAGTGAAGCTGAGG+AGG | + | chr4.3:19298805-19298824 | MS.gene28707:intron | 55.0% |
| ! | GGGCTTGGATCTGAAACACG+AGG | + | chr4.3:19296705-19296724 | MS.gene28707:CDS | 55.0% |
| CATTGATACGCGCGGTGTGG+AGG | + | chr4.3:19296827-19296846 | MS.gene28707:CDS | 60.0% | |
| CTCCACACCGCGCGTATCAA+TGG | - | chr4.3:19296829-19296848 | None:intergenic | 60.0% | |
| TGCCATTGATACGCGCGGTG+TGG | + | chr4.3:19296824-19296843 | MS.gene28707:CDS | 60.0% | |
| TTCAGCATAGGGACCGGCCA+CGG | + | chr4.3:19298615-19298634 | MS.gene28707:intron | 60.0% | |
| ATAGGGACCGGCCACGGATG+TGG | + | chr4.3:19298621-19298640 | MS.gene28707:intron | 65.0% | |
| GAGCAAGCCACATCCGTGGC+CGG | - | chr4.3:19298631-19298650 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 19296291 | 19299214 | 19296291 | ID=MS.gene28707 |
| chr4.3 | mRNA | 19296291 | 19299214 | 19296291 | ID=MS.gene28707.t1;Parent=MS.gene28707 |
| chr4.3 | exon | 19296291 | 19297145 | 19296291 | ID=MS.gene28707.t1.exon1;Parent=MS.gene28707.t1 |
| chr4.3 | CDS | 19296291 | 19297145 | 19296291 | ID=cds.MS.gene28707.t1;Parent=MS.gene28707.t1 |
| chr4.3 | exon | 19297461 | 19297619 | 19297461 | ID=MS.gene28707.t1.exon2;Parent=MS.gene28707.t1 |
| chr4.3 | CDS | 19297461 | 19297619 | 19297461 | ID=cds.MS.gene28707.t1;Parent=MS.gene28707.t1 |
| chr4.3 | exon | 19297802 | 19297928 | 19297802 | ID=MS.gene28707.t1.exon3;Parent=MS.gene28707.t1 |
| chr4.3 | CDS | 19297802 | 19297928 | 19297802 | ID=cds.MS.gene28707.t1;Parent=MS.gene28707.t1 |
| chr4.3 | exon | 19299186 | 19299214 | 19299186 | ID=MS.gene28707.t1.exon4;Parent=MS.gene28707.t1 |
| chr4.3 | CDS | 19299186 | 19299214 | 19299186 | ID=cds.MS.gene28707.t1;Parent=MS.gene28707.t1 |
| Gene Sequence |
| Protein sequence |
