Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28714.t1 | XP_013457305.1 | 97.5 | 238 | 6 | 0 | 1 | 238 | 1 | 238 | 9.90E-136 | 492.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28714.t1 | O48916 | 62.7 | 228 | 85 | 0 | 1 | 228 | 1 | 228 | 6.6e-88 | 325.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28714.t1 | B7FND9 | 97.5 | 238 | 6 | 0 | 1 | 238 | 1 | 238 | 7.1e-136 | 492.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055225 | MS.gene28714 | -0.806318 | 8.72E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene28714 | -0.80218 | 6.34E-49 | -1.69E-46 |
| MS.gene057156 | MS.gene28714 | 0.82642 | 2.74E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28714.t1 | MTR_4g094525 | 97.479 | 238 | 6 | 0 | 1 | 238 | 1 | 238 | 2.60e-174 | 479 |
| MS.gene28714.t1 | MTR_4g094525 | 85.294 | 238 | 4 | 1 | 1 | 238 | 1 | 207 | 3.67e-144 | 401 |
| MS.gene28714.t1 | MTR_2g031370 | 69.068 | 236 | 72 | 1 | 1 | 236 | 13 | 247 | 3.42e-125 | 355 |
| MS.gene28714.t1 | MTR_2g031370 | 68.776 | 237 | 73 | 1 | 1 | 237 | 1 | 236 | 4.73e-125 | 354 |
| MS.gene28714.t1 | MTR_4g094522 | 81.739 | 115 | 21 | 0 | 1 | 115 | 1 | 115 | 1.01e-55 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28714.t1 | AT2G34770 | 63.158 | 228 | 84 | 0 | 1 | 228 | 1 | 228 | 1.00e-108 | 313 |
| MS.gene28714.t1 | AT4G20870 | 61.603 | 237 | 90 | 1 | 1 | 237 | 1 | 236 | 5.83e-107 | 308 |
| MS.gene28714.t1 | AT4G20870 | 61.603 | 237 | 90 | 1 | 1 | 237 | 1 | 236 | 5.83e-107 | 308 |
Find 67 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGGTGATTCCAATTATT+TGG | 0.142082 | 4.3:+19360414 | MS.gene28714:CDS |
| ATGGGTTCATCAACCTATTA+TGG | 0.183910 | 4.3:+19360139 | MS.gene28714:CDS |
| GCAATTGGAACCCAAATAAT+TGG | 0.230184 | 4.3:-19360425 | None:intergenic |
| TTGGTGAAGATTATGATAAA+TGG | 0.262773 | 4.3:+19360120 | MS.gene28714:CDS |
| AAAAGAGGGAGGTGAGGAAC+AGG | 0.286347 | 4.3:-19360485 | None:intergenic |
| TCAATTGCTCCTGCTGTGTT+TGG | 0.295260 | 4.3:+19361522 | MS.gene28714:CDS |
| GTGGGTGATTCCAATTATTT+GGG | 0.302503 | 4.3:+19360415 | MS.gene28714:CDS |
| TTGGCATCACTTCACCACTA+TGG | 0.307245 | 4.3:+19362166 | MS.gene28714:CDS |
| GGGCCTTCCTTGCCCATAAT+AGG | 0.340890 | 4.3:-19360152 | None:intergenic |
| ATGTTCAAACTAAGAGCTAT+TGG | 0.342050 | 4.3:+19360570 | MS.gene28714:CDS |
| TTTCTTTCGTAGCAGTATCT+TGG | 0.345463 | 4.3:+19360178 | MS.gene28714:CDS |
| AGCTATCCATAGGGTGCTTA+TGG | 0.348531 | 4.3:-19360628 | None:intergenic |
| GAATAAACCCCTTGTTTGTC+AGG | 0.349453 | 4.3:+19359863 | MS.gene28714:CDS |
| TGTTCAAACTAAGAGCTATT+GGG | 0.361825 | 4.3:+19360571 | MS.gene28714:CDS |
| AATTGTTACTTATCTACGTT+TGG | 0.364138 | 4.3:-19362232 | None:intergenic |
| CATTTATAACTCTTTCAGAT+TGG | 0.376626 | 4.3:+19360457 | MS.gene28714:CDS |
| ATTTATAACTCTTTCAGATT+GGG | 0.403789 | 4.3:+19360458 | MS.gene28714:CDS |
| AGGGTCCAGAGCCTTGGCTT+TGG | 0.410334 | 4.3:+19362147 | MS.gene28714:CDS |
| CACTTCACCACTATGGGATA+AGG | 0.426484 | 4.3:+19362173 | MS.gene28714:CDS |
| TGGGTTCATCAACCTATTAT+GGG | 0.432385 | 4.3:+19360140 | MS.gene28714:CDS |
| AAAACGGTGCAATAAGTATT+CGG | 0.433689 | 4.3:-19360540 | None:intergenic |
| TGGTGAAGATTATGATAAAT+GGG | 0.434108 | 4.3:+19360121 | MS.gene28714:CDS |
| ATTGCTCCTGCTGTGTTTGG+AGG | 0.436809 | 4.3:+19361525 | MS.gene28714:CDS |
| ACCATTTGAATCATCACTAC+AGG | 0.439539 | 4.3:+19362127 | MS.gene28714:CDS |
| CTTTCGTAGCAGTATCTTGG+AGG | 0.464905 | 4.3:+19360181 | MS.gene28714:CDS |
| TGATGCCAAAGCCAAGGCTC+TGG | 0.469577 | 4.3:-19362152 | None:intergenic |
| TTTGAACATGGAAAAGAAAA+CGG | 0.472915 | 4.3:-19360556 | None:intergenic |
| CACTACAGGGTCCAGAGCCT+TGG | 0.478105 | 4.3:+19362141 | MS.gene28714:CDS |
| TGGCATCACTTCACCACTAT+GGG | 0.480111 | 4.3:+19362167 | MS.gene28714:CDS |
| ACACATTATTACTTGCATCA+TGG | 0.488209 | 4.3:+19361579 | MS.gene28714:CDS |
| ACAAGTCTTAAGCTATCCAT+AGG | 0.497021 | 4.3:-19360638 | None:intergenic |
| TAAATGAAACAAGATGCAAT+TGG | 0.498395 | 4.3:-19360440 | None:intergenic |
| ATGTGACAGGTTGGTCATCT+TGG | 0.510797 | 4.3:+19360101 | MS.gene28714:intron |
| CAACCTATTATGGGCAAGGA+AGG | 0.526322 | 4.3:+19360149 | MS.gene28714:CDS |
| AACACAGCAGGAGCAATTGA+AGG | 0.534894 | 4.3:-19361519 | None:intergenic |
| GGTGCTTATGGTGGCAACCA+TGG | 0.543946 | 4.3:-19360616 | None:intergenic |
| GCTATTAAAGCGGCTCCAGC+TGG | 0.544240 | 4.3:-19360668 | None:intergenic |
| ACATTGCATTATCTTCTCCA+TGG | 0.544817 | 4.3:+19360599 | MS.gene28714:CDS |
| ATGCCGAGTAGCACGAAAAG+AGG | 0.548185 | 4.3:-19360500 | None:intergenic |
| TTTCACGCGAACTGCTTGGT+GGG | 0.549072 | 4.3:+19360397 | MS.gene28714:CDS |
| GGTTCCTCCTCCATCAAAAG+TGG | 0.554501 | 4.3:+19362206 | MS.gene28714:CDS |
| ATTAAAGCGGCTCCAGCTGG+TGG | 0.557678 | 4.3:-19360665 | None:intergenic |
| AGTTGGTTACCTGACAAACA+AGG | 0.563299 | 4.3:-19359872 | None:intergenic |
| TTGCCACCATAAGCACCCTA+TGG | 0.565998 | 4.3:+19360622 | MS.gene28714:CDS |
| AGCCGCTTTAATAGCCTACA+TGG | 0.576385 | 4.3:+19360676 | MS.gene28714:CDS |
| GTTCAAACTAAGAGCTATTG+GGG | 0.580121 | 4.3:+19360572 | MS.gene28714:CDS |
| AGCACGAAAAGAGGGAGGTG+AGG | 0.582858 | 4.3:-19360491 | None:intergenic |
| CCCTGTAGTGATGATTCAAA+TGG | 0.586439 | 4.3:-19362128 | None:intergenic |
| TCATCAACCTATTATGGGCA+AGG | 0.588235 | 4.3:+19360145 | MS.gene28714:CDS |
| AATAGCTCTTAGTTTGAACA+TGG | 0.589170 | 4.3:-19360568 | None:intergenic |
| TAGAAAGGGGTATACCATGT+AGG | 0.600427 | 4.3:-19360690 | None:intergenic |
| AAAATGCCTCCAAACACAGC+AGG | 0.605294 | 4.3:-19361531 | None:intergenic |
| CAAGTCTTAAGCTATCCATA+GGG | 0.618487 | 4.3:-19360637 | None:intergenic |
| TGCCGAGTAGCACGAAAAGA+GGG | 0.619206 | 4.3:-19360499 | None:intergenic |
| TATCCATAGGGTGCTTATGG+TGG | 0.620677 | 4.3:-19360625 | None:intergenic |
| GTGAAGTGATGCCAAAGCCA+AGG | 0.625285 | 4.3:-19362158 | None:intergenic |
| ACAGCAGGAGCAATTGAAGG+AGG | 0.629758 | 4.3:-19361516 | None:intergenic |
| CCATTTGAATCATCACTACA+GGG | 0.637039 | 4.3:+19362128 | MS.gene28714:CDS |
| AAAGAGGGAGGTGAGGAACA+GGG | 0.637398 | 4.3:-19360484 | None:intergenic |
| GTTGGTTACCTGACAAACAA+GGG | 0.639760 | 4.3:-19359871 | None:intergenic |
| TTGGTTACCTGACAAACAAG+GGG | 0.643258 | 4.3:-19359870 | None:intergenic |
| CAGCAGGAGCAATTGAAGGA+GGG | 0.648334 | 4.3:-19361515 | None:intergenic |
| TACTGCTACGAAAGAAACGA+GGG | 0.659997 | 4.3:-19360172 | None:intergenic |
| TACCATGTAGGCTATTAAAG+CGG | 0.682242 | 4.3:-19360678 | None:intergenic |
| ATACTGCTACGAAAGAAACG+AGG | 0.685461 | 4.3:-19360173 | None:intergenic |
| CGAGTAGCACGAAAAGAGGG+AGG | 0.696341 | 4.3:-19360496 | None:intergenic |
| AGGGAATACAAGCTTCACTG+AGG | 0.754775 | 4.3:-19361496 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATAAACTCTTTATTA+TGG | + | chr4.3:19360829-19360848 | MS.gene28714:intron | 10.0% |
| !!! | ATAATCAATTTTAATGCATA+TGG | - | chr4.3:19360255-19360274 | None:intergenic | 15.0% |
| !!! | TCAACTATTTTAAAGAAATT+TGG | + | chr4.3:19361889-19361908 | MS.gene28714:intron | 15.0% |
| !!! | TGCATTAAAATTGATTATTT+TGG | + | chr4.3:19360257-19360276 | MS.gene28714:intron | 15.0% |
| !! | AAAAAAAAAGTGAATTGAGT+TGG | - | chr4.3:19359892-19359911 | None:intergenic | 20.0% |
| !! | AAATCATGCATATAATGAAA+AGG | - | chr4.3:19360745-19360764 | None:intergenic | 20.0% |
| !! | AACAAAAGAAAAATGTAGAA+AGG | - | chr4.3:19360708-19360727 | None:intergenic | 20.0% |
| !! | ACAAAAGAAAAATGTAGAAA+GGG | - | chr4.3:19360707-19360726 | None:intergenic | 20.0% |
| !! | ATAATATTTGACATACTTGT+AGG | + | chr4.3:19361113-19361132 | MS.gene28714:intron | 20.0% |
| !! | ATGAAAATTTAATGTAGGTA+GGG | - | chr4.3:19360223-19360242 | None:intergenic | 20.0% |
| !! | ATTATTAAGATTTGTGTTGT+TGG | + | chr4.3:19360367-19360386 | MS.gene28714:intron | 20.0% |
| !! | ATTTATAACTCTTTCAGATT+GGG | + | chr4.3:19360458-19360477 | MS.gene28714:CDS | 20.0% |
| !! | GAATGATGAAAATTTAATGT+AGG | - | chr4.3:19360228-19360247 | None:intergenic | 20.0% |
| !! | TAATATTTGACATACTTGTA+GGG | + | chr4.3:19361114-19361133 | MS.gene28714:intron | 20.0% |
| !!! | ATTTCATTGTTTAGTTTTGA+AGG | + | chr4.3:19360974-19360993 | MS.gene28714:intron | 20.0% |
| ! | AATATTTGACATACTTGTAG+GGG | + | chr4.3:19361115-19361134 | MS.gene28714:intron | 25.0% |
| ! | CAAAAGAAAAATGTAGAAAG+GGG | - | chr4.3:19360706-19360725 | None:intergenic | 25.0% |
| ! | CATTTATAACTCTTTCAGAT+TGG | + | chr4.3:19360457-19360476 | MS.gene28714:CDS | 25.0% |
| ! | GATGAAAATTTAATGTAGGT+AGG | - | chr4.3:19360224-19360243 | None:intergenic | 25.0% |
| ! | GATGAGATAATTAAAATGTC+TGG | - | chr4.3:19359991-19360010 | None:intergenic | 25.0% |
| ! | TAAATGAAACAAGATGCAAT+TGG | - | chr4.3:19360443-19360462 | None:intergenic | 25.0% |
| ! | TATACCAATTCAATTGATGT+TGG | + | chr4.3:19361044-19361063 | MS.gene28714:intron | 25.0% |
| ! | TGGTGAAGATTATGATAAAT+GGG | + | chr4.3:19360121-19360140 | MS.gene28714:CDS | 25.0% |
| ! | TGTTGTTACTGAAGAAAATA+AGG | - | chr4.3:19361916-19361935 | None:intergenic | 25.0% |
| ! | TTGGTGAAGATTATGATAAA+TGG | + | chr4.3:19360120-19360139 | MS.gene28714:CDS | 25.0% |
| ! | TTTCTACTTGAAATGATTAG+AGG | - | chr4.3:19360858-19360877 | None:intergenic | 25.0% |
| ! | TTTGAACATGGAAAAGAAAA+CGG | - | chr4.3:19360559-19360578 | None:intergenic | 25.0% |
| !! | ATTTTGCAAAAGTAACACAT+TGG | - | chr4.3:19361692-19361711 | None:intergenic | 25.0% |
| !! | GTATCTAAAACAAACTTCTA+AGG | - | chr4.3:19361023-19361042 | None:intergenic | 25.0% |
| !!! | TTAAGTACTTTGAAATCTTG+AGG | + | chr4.3:19361083-19361102 | MS.gene28714:intron | 25.0% |
| !!! | TTTAGTTTTGAAGGAATGAA+CGG | + | chr4.3:19360983-19361002 | MS.gene28714:intron | 25.0% |
| AAAACGGTGCAATAAGTATT+CGG | - | chr4.3:19360543-19360562 | None:intergenic | 30.0% | |
| AAATTTAATGTAGGTAGGGT+AGG | - | chr4.3:19360219-19360238 | None:intergenic | 30.0% | |
| AAGTAAATTCTTACGTACTC+TGG | - | chr4.3:19360055-19360074 | None:intergenic | 30.0% | |
| AATGGTACTTCTGCAAAATA+AGG | - | chr4.3:19362113-19362132 | None:intergenic | 30.0% | |
| AATTTAATGTAGGTAGGGTA+GGG | - | chr4.3:19360218-19360237 | None:intergenic | 30.0% | |
| ACACATTATTACTTGCATCA+TGG | + | chr4.3:19361579-19361598 | MS.gene28714:CDS | 30.0% | |
| ACCCATATGGATAAATGAAA+CGG | - | chr4.3:19361829-19361848 | None:intergenic | 30.0% | |
| ATGTCATGTTCGAAAAAGAA+AGG | - | chr4.3:19361993-19362012 | None:intergenic | 30.0% | |
| ATGTTCAAACTAAGAGCTAT+TGG | + | chr4.3:19360570-19360589 | MS.gene28714:CDS | 30.0% | |
| CATATTAGTTGATCGAAAAC+TGG | + | chr4.3:19361761-19361780 | MS.gene28714:intron | 30.0% | |
| CATCATAAGATTCATAACTG+TGG | + | chr4.3:19360926-19360945 | MS.gene28714:intron | 30.0% | |
| CTGTTTATCTTTCACCAAAA+AGG | - | chr4.3:19361943-19361962 | None:intergenic | 30.0% | |
| GATACCAACATCAATTGAAT+TGG | - | chr4.3:19361051-19361070 | None:intergenic | 30.0% | |
| TAATGTGCCAAAAAATCTCA+AGG | + | chr4.3:19361614-19361633 | MS.gene28714:CDS | 30.0% | |
| TATGTCACAGTTATCTTTAG+AGG | - | chr4.3:19360773-19360792 | None:intergenic | 30.0% | |
| TCCGTTTCATTTATCCATAT+GGG | + | chr4.3:19361825-19361844 | MS.gene28714:intron | 30.0% | |
| TGGTAAGGTAAACTATACAA+TGG | - | chr4.3:19361733-19361752 | None:intergenic | 30.0% | |
| TGTCAATAGTTCTTCTATAG+AGG | - | chr4.3:19361399-19361418 | None:intergenic | 30.0% | |
| TGTTCAAACTAAGAGCTATT+GGG | + | chr4.3:19360571-19360590 | MS.gene28714:CDS | 30.0% | |
| TTCCGTTTCATTTATCCATA+TGG | + | chr4.3:19361824-19361843 | MS.gene28714:intron | 30.0% | |
| TTTCGATCAACTAATATGTC+TGG | - | chr4.3:19361759-19361778 | None:intergenic | 30.0% | |
| ! | AATAGCTCTTAGTTTGAACA+TGG | - | chr4.3:19360571-19360590 | None:intergenic | 30.0% |
| ! | TGTGTCTTTCTTGTTTGATA+AGG | - | chr4.3:19361241-19361260 | None:intergenic | 30.0% |
| !!! | GCTTATACCTTGAGATTTTT+TGG | - | chr4.3:19361624-19361643 | None:intergenic | 30.0% |
| !!! | TTAGTTTTGAAGGAATGAAC+GGG | + | chr4.3:19360984-19361003 | MS.gene28714:intron | 30.0% |
| !!! | TTTTTTGGCACATTACTCTT+TGG | - | chr4.3:19361609-19361628 | None:intergenic | 30.0% |
| AAAAGTAACACATTGGAGCA+AGG | - | chr4.3:19361685-19361704 | None:intergenic | 35.0% | |
| AAGTCTGTTAGTATTAGACG+AGG | + | chr4.3:19361144-19361163 | MS.gene28714:intron | 35.0% | |
| AATGTCACAGTAGTAACTAG+TGG | - | chr4.3:19361801-19361820 | None:intergenic | 35.0% | |
| AATTGACAACACTATGTGAC+AGG | + | chr4.3:19360088-19360107 | MS.gene28714:intron | 35.0% | |
| ACAAGTCTTAAGCTATCCAT+AGG | - | chr4.3:19360641-19360660 | None:intergenic | 35.0% | |
| ACATTGCATTATCTTCTCCA+TGG | + | chr4.3:19360599-19360618 | MS.gene28714:CDS | 35.0% | |
| ACCATTTGAATCATCACTAC+AGG | + | chr4.3:19362127-19362146 | MS.gene28714:CDS | 35.0% | |
| ACGAGGAAGAAAGTAATGTT+AGG | + | chr4.3:19361161-19361180 | MS.gene28714:intron | 35.0% | |
| ACTTGTCAGTTGTCTTTCTA+AGG | - | chr4.3:19362079-19362098 | None:intergenic | 35.0% | |
| AGCTCCTACTAAGAATATGA+TGG | + | chr4.3:19361961-19361980 | MS.gene28714:intron | 35.0% | |
| ATGGGTTCATCAACCTATTA+TGG | + | chr4.3:19360139-19360158 | MS.gene28714:CDS | 35.0% | |
| CAAGTCTTAAGCTATCCATA+GGG | - | chr4.3:19360640-19360659 | None:intergenic | 35.0% | |
| CACTTTCCCTTCTTAAAATG+TGG | + | chr4.3:19361643-19361662 | MS.gene28714:intron | 35.0% | |
| CATATGGGTCTCTTAAACTT+GGG | + | chr4.3:19361840-19361859 | MS.gene28714:intron | 35.0% | |
| CCATTTGAATCATCACTACA+GGG | + | chr4.3:19362128-19362147 | MS.gene28714:CDS | 35.0% | |
| CGAAACAAGACATGTATTTC+TGG | - | chr4.3:19361296-19361315 | None:intergenic | 35.0% | |
| CGAGGAAGAAAGTAATGTTA+GGG | + | chr4.3:19361162-19361181 | MS.gene28714:intron | 35.0% | |
| GATAAGGCTTATGAGTTGTA+TGG | - | chr4.3:19361225-19361244 | None:intergenic | 35.0% | |
| GCAATTGGAACCCAAATAAT+TGG | - | chr4.3:19360428-19360447 | None:intergenic | 35.0% | |
| GCAGTAAATGAGTAGTACAT+AGG | + | chr4.3:19361369-19361388 | MS.gene28714:intron | 35.0% | |
| GTACTTCTGCAAAATAAGGA+AGG | - | chr4.3:19362109-19362128 | None:intergenic | 35.0% | |
| GTGGGTGATTCCAATTATTT+GGG | + | chr4.3:19360415-19360434 | MS.gene28714:CDS | 35.0% | |
| GTTCAAACTAAGAGCTATTG+GGG | + | chr4.3:19360572-19360591 | MS.gene28714:CDS | 35.0% | |
| TAACTGTGACATAGTTTCTC+TGG | + | chr4.3:19360780-19360799 | MS.gene28714:intron | 35.0% | |
| TACCATGTAGGCTATTAAAG+CGG | - | chr4.3:19360681-19360700 | None:intergenic | 35.0% | |
| TGATGTTGGTATCAGAAGTA+CGG | + | chr4.3:19361058-19361077 | MS.gene28714:intron | 35.0% | |
| TGCACCATCATATTCTTAGT+AGG | - | chr4.3:19361968-19361987 | None:intergenic | 35.0% | |
| TGGGTTCATCAACCTATTAT+GGG | + | chr4.3:19360140-19360159 | MS.gene28714:CDS | 35.0% | |
| TGTATGGTAGCAATACATGA+AGG | - | chr4.3:19361209-19361228 | None:intergenic | 35.0% | |
| TTTCTTTCGTAGCAGTATCT+TGG | + | chr4.3:19360178-19360197 | MS.gene28714:CDS | 35.0% | |
| ! | AAGATTTGTGTTGTTGGAAC+AGG | + | chr4.3:19360373-19360392 | MS.gene28714:intron | 35.0% |
| ! | AGTAACAACAGTGACCTTTT+TGG | + | chr4.3:19361926-19361945 | MS.gene28714:intron | 35.0% |
| ! | GAATTGTGTTTAGAGGGTTT+TGG | + | chr4.3:19360309-19360328 | MS.gene28714:intron | 35.0% |
| ! | TCAACTAATATGTCTGGCTT+TGG | - | chr4.3:19361753-19361772 | None:intergenic | 35.0% |
| ! | TGTGGTGTTAGTGTAAATGA+TGG | + | chr4.3:19360944-19360963 | MS.gene28714:intron | 35.0% |
| !! | ATGGGATAAGGTTTTTGGAA+CGG | + | chr4.3:19362185-19362204 | MS.gene28714:CDS | 35.0% |
| !! | GTATTTCTGGCTAGTTGAAA+CGG | - | chr4.3:19361283-19361302 | None:intergenic | 35.0% |
| !! | TAATATGTCTGGCTTTGGTA+AGG | - | chr4.3:19361748-19361767 | None:intergenic | 35.0% |
| !! | TCTCTGGAATTGTGTTTAGA+GGG | + | chr4.3:19360303-19360322 | MS.gene28714:intron | 35.0% |
| !! | TGTCGTCCACATTTTAAGAA+GGG | - | chr4.3:19361652-19361671 | None:intergenic | 35.0% |
| !! | TTGTCGTCCACATTTTAAGA+AGG | - | chr4.3:19361653-19361672 | None:intergenic | 35.0% |
| AATGTTAGGGTCAAATGCAG+AGG | + | chr4.3:19361175-19361194 | MS.gene28714:intron | 40.0% | |
| AGTTGGTTACCTGACAAACA+AGG | - | chr4.3:19359875-19359894 | None:intergenic | 40.0% | |
| ATACTGCTACGAAAGAAACG+AGG | - | chr4.3:19360176-19360195 | None:intergenic | 40.0% | |
| CCAAAAACCTTATCCCATAG+TGG | - | chr4.3:19362183-19362202 | None:intergenic | 40.0% | |
| CCAAGTTTAAGAGACCCATA+TGG | - | chr4.3:19361842-19361861 | None:intergenic | 40.0% | |
| CCATATGGGTCTCTTAAACT+TGG | + | chr4.3:19361839-19361858 | MS.gene28714:intron | 40.0% | |
| CCCTGTAGTGATGATTCAAA+TGG | - | chr4.3:19362131-19362150 | None:intergenic | 40.0% | |
| GGTGGGTGATTCCAATTATT+TGG | + | chr4.3:19360414-19360433 | MS.gene28714:CDS | 40.0% | |
| GTTGGTTACCTGACAAACAA+GGG | - | chr4.3:19359874-19359893 | None:intergenic | 40.0% | |
| TAATCCTATTCGAGTCGTGT+CGG | + | chr4.3:19359939-19359958 | MS.gene28714:intron | 40.0% | |
| TACTGCTACGAAAGAAACGA+GGG | - | chr4.3:19360175-19360194 | None:intergenic | 40.0% | |
| TCATCAACCTATTATGGGCA+AGG | + | chr4.3:19360145-19360164 | MS.gene28714:CDS | 40.0% | |
| TTGAAGGAATGAACGGGAAT+GGG | + | chr4.3:19360990-19361009 | MS.gene28714:intron | 40.0% | |
| TTGGTTACCTGACAAACAAG+GGG | - | chr4.3:19359873-19359892 | None:intergenic | 40.0% | |
| TTTGAAGGAATGAACGGGAA+TGG | + | chr4.3:19360989-19361008 | MS.gene28714:intron | 40.0% | |
| ! | CCACTATGGGATAAGGTTTT+TGG | + | chr4.3:19362180-19362199 | MS.gene28714:CDS | 40.0% |
| ! | GAATAAACCCCTTGTTTGTC+AGG | + | chr4.3:19359863-19359882 | MS.gene28714:CDS | 40.0% |
| ! | TAGAAAGGGGTATACCATGT+AGG | - | chr4.3:19360693-19360712 | None:intergenic | 40.0% |
| ! | TCTGGAGTTTGGTTGAGTAT+CGG | - | chr4.3:19360037-19360056 | None:intergenic | 40.0% |
| ! | TGCTACTCGGCATTTTTGTA+TGG | + | chr4.3:19360510-19360529 | MS.gene28714:CDS | 40.0% |
| !! | CGACTCAAAAGATTAGTCTC+TGG | + | chr4.3:19360287-19360306 | MS.gene28714:intron | 40.0% |
| !! | GTCTCTGGAATTGTGTTTAG+AGG | + | chr4.3:19360302-19360321 | MS.gene28714:intron | 40.0% |
| !! | TTCTTACGTACTCTGGAGTT+TGG | - | chr4.3:19360048-19360067 | None:intergenic | 40.0% |
| !!! | GTGTTTGGAGGCATTTTGTT+GGG | + | chr4.3:19361537-19361556 | MS.gene28714:CDS | 40.0% |
| !!! | TGTGTTTGGAGGCATTTTGT+TGG | + | chr4.3:19361536-19361555 | MS.gene28714:CDS | 40.0% |
| AAAATGCCTCCAAACACAGC+AGG | - | chr4.3:19361534-19361553 | None:intergenic | 45.0% | |
| AACACAGCAGGAGCAATTGA+AGG | - | chr4.3:19361522-19361541 | None:intergenic | 45.0% | |
| AATGTAGGTAGGGTAGGGTA+GGG | - | chr4.3:19360213-19360232 | None:intergenic | 45.0% | |
| AGGGAATACAAGCTTCACTG+AGG | - | chr4.3:19361499-19361518 | None:intergenic | 45.0% | |
| CAACCTATTATGGGCAAGGA+AGG | + | chr4.3:19360149-19360168 | MS.gene28714:CDS | 45.0% | |
| CACTTCACCACTATGGGATA+AGG | + | chr4.3:19362173-19362192 | MS.gene28714:CDS | 45.0% | |
| CTTTCGTAGCAGTATCTTGG+AGG | + | chr4.3:19360181-19360200 | MS.gene28714:CDS | 45.0% | |
| GACAACACTATGTGACAGGT+TGG | + | chr4.3:19360092-19360111 | MS.gene28714:intron | 45.0% | |
| TAATGTAGGTAGGGTAGGGT+AGG | - | chr4.3:19360214-19360233 | None:intergenic | 45.0% | |
| TAGGGTCAAATGCAGAGGTT+AGG | + | chr4.3:19361180-19361199 | MS.gene28714:intron | 45.0% | |
| TCAATTGCTCCTGCTGTGTT+TGG | + | chr4.3:19361522-19361541 | MS.gene28714:CDS | 45.0% | |
| TGGCATCACTTCACCACTAT+GGG | + | chr4.3:19362167-19362186 | MS.gene28714:CDS | 45.0% | |
| TTGGCATCACTTCACCACTA+TGG | + | chr4.3:19362166-19362185 | MS.gene28714:CDS | 45.0% | |
| ! | AGCCGCTTTAATAGCCTACA+TGG | + | chr4.3:19360676-19360695 | MS.gene28714:CDS | 45.0% |
| ! | AGCTATCCATAGGGTGCTTA+TGG | - | chr4.3:19360631-19360650 | None:intergenic | 45.0% |
| ! | TATCCATAGGGTGCTTATGG+TGG | - | chr4.3:19360628-19360647 | None:intergenic | 45.0% |
| !! | AGACTTGTTTTTCCACCAGC+TGG | + | chr4.3:19360653-19360672 | MS.gene28714:CDS | 45.0% |
| !! | ATGTGACAGGTTGGTCATCT+TGG | + | chr4.3:19360101-19360120 | MS.gene28714:intron | 45.0% |
| !! | CGTTTGGCATCCACTTTTGA+TGG | - | chr4.3:19362219-19362238 | None:intergenic | 45.0% |
| !! | TTGGCATCCACTTTTGATGG+AGG | - | chr4.3:19362216-19362235 | None:intergenic | 45.0% |
| AAAAGAGGGAGGTGAGGAAC+AGG | - | chr4.3:19360488-19360507 | None:intergenic | 50.0% | |
| AAAGAGGGAGGTGAGGAACA+GGG | - | chr4.3:19360487-19360506 | None:intergenic | 50.0% | |
| ACAGCAGGAGCAATTGAAGG+AGG | - | chr4.3:19361519-19361538 | None:intergenic | 50.0% | |
| ATGCCGAGTAGCACGAAAAG+AGG | - | chr4.3:19360503-19360522 | None:intergenic | 50.0% | |
| ATTGCTCCTGCTGTGTTTGG+AGG | + | chr4.3:19361525-19361544 | MS.gene28714:CDS | 50.0% | |
| CAGCAGGAGCAATTGAAGGA+GGG | - | chr4.3:19361518-19361537 | None:intergenic | 50.0% | |
| GGTTCCTCCTCCATCAAAAG+TGG | + | chr4.3:19362206-19362225 | MS.gene28714:CDS | 50.0% | |
| GTGAAGTGATGCCAAAGCCA+AGG | - | chr4.3:19362161-19362180 | None:intergenic | 50.0% | |
| TGCCGAGTAGCACGAAAAGA+GGG | - | chr4.3:19360502-19360521 | None:intergenic | 50.0% | |
| TTGCCACCATAAGCACCCTA+TGG | + | chr4.3:19360622-19360641 | MS.gene28714:CDS | 50.0% | |
| TTGTCTGCAACGTCCAGATC+TGG | + | chr4.3:19361472-19361491 | MS.gene28714:intron | 50.0% | |
| TTTCACGCGAACTGCTTGGT+GGG | + | chr4.3:19360397-19360416 | MS.gene28714:CDS | 50.0% | |
| ! | AGGTTTTCACGCGAACTGCT+TGG | + | chr4.3:19360393-19360412 | MS.gene28714:intron | 50.0% |
| ! | TTTTCACGCGAACTGCTTGG+TGG | + | chr4.3:19360396-19360415 | MS.gene28714:CDS | 50.0% |
| !! | CTCCCTCTTTTCGTGCTACT+CGG | + | chr4.3:19360497-19360516 | MS.gene28714:CDS | 50.0% |
| !! | GCATCCACTTTTGATGGAGG+AGG | - | chr4.3:19362213-19362232 | None:intergenic | 50.0% |
| AGCACGAAAAGAGGGAGGTG+AGG | - | chr4.3:19360494-19360513 | None:intergenic | 55.0% | |
| ATTAAAGCGGCTCCAGCTGG+TGG | - | chr4.3:19360668-19360687 | None:intergenic | 55.0% | |
| CGAGTAGCACGAAAAGAGGG+AGG | - | chr4.3:19360499-19360518 | None:intergenic | 55.0% | |
| GCTATTAAAGCGGCTCCAGC+TGG | - | chr4.3:19360671-19360690 | None:intergenic | 55.0% | |
| GCTTCACTGAGGACCAGATC+TGG | - | chr4.3:19361488-19361507 | None:intergenic | 55.0% | |
| GGGCCTTCCTTGCCCATAAT+AGG | - | chr4.3:19360155-19360174 | None:intergenic | 55.0% | |
| GGTGCTTATGGTGGCAACCA+TGG | - | chr4.3:19360619-19360638 | None:intergenic | 55.0% | |
| GTGTCCGACACGACTCGAAT+AGG | - | chr4.3:19359946-19359965 | None:intergenic | 55.0% | |
| TAGGTAGGGTAGGGTAGGGT+AGG | - | chr4.3:19360209-19360228 | None:intergenic | 55.0% | |
| TGATGCCAAAGCCAAGGCTC+TGG | - | chr4.3:19362155-19362174 | None:intergenic | 55.0% | |
| AGGGTCCAGAGCCTTGGCTT+TGG | + | chr4.3:19362147-19362166 | MS.gene28714:CDS | 60.0% | |
| CACTACAGGGTCCAGAGCCT+TGG | + | chr4.3:19362141-19362160 | MS.gene28714:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 19359834 | 19362245 | 19359834 | ID=MS.gene28714 |
| chr4.3 | mRNA | 19359834 | 19362245 | 19359834 | ID=MS.gene28714.t1;Parent=MS.gene28714 |
| chr4.3 | exon | 19359834 | 19359884 | 19359834 | ID=MS.gene28714.t1.exon1;Parent=MS.gene28714.t1 |
| chr4.3 | CDS | 19359834 | 19359884 | 19359834 | ID=cds.MS.gene28714.t1;Parent=MS.gene28714.t1 |
| chr4.3 | exon | 19360110 | 19360202 | 19360110 | ID=MS.gene28714.t1.exon2;Parent=MS.gene28714.t1 |
| chr4.3 | CDS | 19360110 | 19360202 | 19360110 | ID=cds.MS.gene28714.t1;Parent=MS.gene28714.t1 |
| chr4.3 | exon | 19360395 | 19360697 | 19360395 | ID=MS.gene28714.t1.exon3;Parent=MS.gene28714.t1 |
| chr4.3 | CDS | 19360395 | 19360697 | 19360395 | ID=cds.MS.gene28714.t1;Parent=MS.gene28714.t1 |
| chr4.3 | exon | 19361489 | 19361635 | 19361489 | ID=MS.gene28714.t1.exon4;Parent=MS.gene28714.t1 |
| chr4.3 | CDS | 19361489 | 19361635 | 19361489 | ID=cds.MS.gene28714.t1;Parent=MS.gene28714.t1 |
| chr4.3 | exon | 19362123 | 19362245 | 19362123 | ID=MS.gene28714.t1.exon5;Parent=MS.gene28714.t1 |
| chr4.3 | CDS | 19362123 | 19362245 | 19362123 | ID=cds.MS.gene28714.t1;Parent=MS.gene28714.t1 |
| Gene Sequence |
| Protein sequence |
