Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29410.t1 | XP_024635454.1 | 96.6 | 294 | 10 | 0 | 1 | 294 | 1 | 294 | 4.40E-160 | 573.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29410.t1 | P46519 | 30.7 | 137 | 95 | 0 | 41 | 177 | 14 | 150 | 2.1e-17 | 91.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29410.t1 | A0A072V5S0 | 96.6 | 294 | 10 | 0 | 1 | 294 | 1 | 294 | 3.2e-160 | 573.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053494 | MS.gene29410 | 0.820355 | 7.17E-53 | -1.69E-46 |
| MS.gene054183 | MS.gene29410 | 0.803955 | 2.72E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene29410 | 0.800062 | 1.72E-48 | -1.69E-46 |
| MS.gene056723 | MS.gene29410 | 0.819577 | 1.08E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene29410 | -0.808042 | 3.76E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29410.t1 | MTR_3g045190 | 96.129 | 310 | 12 | 0 | 1 | 310 | 1 | 310 | 0.0 | 590 |
| MS.gene29410.t1 | MTR_5g088850 | 78.914 | 313 | 55 | 3 | 1 | 302 | 1 | 313 | 1.09e-170 | 478 |
| MS.gene29410.t1 | MTR_5g088850 | 78.846 | 312 | 55 | 3 | 1 | 301 | 1 | 312 | 1.20e-169 | 474 |
| MS.gene29410.t1 | MTR_5g088850 | 78.846 | 312 | 55 | 3 | 1 | 301 | 1 | 312 | 1.33e-169 | 473 |
| MS.gene29410.t1 | MTR_8g028480 | 31.081 | 148 | 96 | 2 | 25 | 172 | 4 | 145 | 8.06e-21 | 87.4 |
| MS.gene29410.t1 | MTR_7g079180 | 27.027 | 148 | 102 | 1 | 25 | 172 | 3 | 144 | 5.02e-15 | 71.6 |
| MS.gene29410.t1 | MTR_7g079180 | 27.027 | 148 | 102 | 1 | 25 | 172 | 4 | 145 | 5.45e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29410.t1 | AT2G44060 | 71.698 | 318 | 69 | 3 | 1 | 299 | 1 | 316 | 2.47e-159 | 447 |
| MS.gene29410.t1 | AT2G44060 | 71.698 | 318 | 69 | 3 | 1 | 299 | 1 | 316 | 2.47e-159 | 447 |
| MS.gene29410.t1 | AT2G46140 | 29.878 | 164 | 105 | 2 | 13 | 172 | 3 | 160 | 3.99e-17 | 77.8 |
| MS.gene29410.t1 | AT1G01470 | 28.667 | 150 | 101 | 1 | 23 | 172 | 2 | 145 | 6.36e-17 | 77.0 |
Find 89 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATTGATATTAACTATT+TGG | 0.135397 | 3.3:+31546688 | MS.gene29410:CDS |
| ACCTTCAGGCCGAAGGATTT+TGG | 0.160524 | 3.3:+31547181 | MS.gene29410:CDS |
| CCAAATAGTTAATATCAATT+AGG | 0.192476 | 3.3:-31546688 | None:intergenic |
| CAAATAGTTAATATCAATTA+GGG | 0.255310 | 3.3:-31546687 | None:intergenic |
| GTACCGCCTTCTTTGCTAAT+AGG | 0.281765 | 3.3:-31547298 | None:intergenic |
| AGATCAACCTTCACCTTATA+AGG | 0.293664 | 3.3:-31546863 | None:intergenic |
| GGGAAGTATCATTCCTTATA+AGG | 0.326085 | 3.3:+31546850 | MS.gene29410:CDS |
| AGGGGAATCGGTACCGGATT+CGG | 0.326651 | 3.3:-31546668 | None:intergenic |
| TTGAGGAAACAGTTGGGTTT+GGG | 0.329702 | 3.3:+31546558 | MS.gene29410:CDS |
| CGATGGGAGGAAGCTAGTTT+CGG | 0.342864 | 3.3:+31546718 | MS.gene29410:CDS |
| TCGGGTTTGATACCGGATTC+TGG | 0.343130 | 3.3:+31546737 | MS.gene29410:CDS |
| ATTGAGGAAACAGTTGGGTT+TGG | 0.356214 | 3.3:+31546557 | MS.gene29410:CDS |
| GATGGGAGGAAGCTAGTTTC+GGG | 0.364581 | 3.3:+31546719 | MS.gene29410:CDS |
| AGGGTTTCATTCAAGACATT+GGG | 0.374827 | 3.3:+31546528 | MS.gene29410:CDS |
| TACATATGCTGATATTCAAC+CGG | 0.384028 | 3.3:+31546829 | MS.gene29410:CDS |
| TCATCATAAATCAAAGTAAC+AGG | 0.388586 | 3.3:-31546797 | None:intergenic |
| GAAACCAACTGCAGATGTTT+CGG | 0.390895 | 3.3:+31546580 | MS.gene29410:CDS |
| ATAGTTGATGTTCCTGTGAT+TGG | 0.392201 | 3.3:+31546887 | MS.gene29410:CDS |
| ATTGATGTTGACACACCCTT+TGG | 0.403399 | 3.3:+31547262 | MS.gene29410:CDS |
| TTGATCTTCCAATCACCTTC+AGG | 0.405514 | 3.3:+31547167 | MS.gene29410:CDS |
| ATATCAGGCTTGTATGGAAT+CGG | 0.407998 | 3.3:-31546947 | None:intergenic |
| TAAACCAGAAATAGTGAAAA+GGG | 0.409076 | 3.3:+31546454 | MS.gene29410:CDS |
| TTATAAGGAATGATACTTCC+CGG | 0.412721 | 3.3:-31546848 | None:intergenic |
| ACAAAAGGAAGGTGAGGAAA+AGG | 0.421788 | 3.3:+31546484 | MS.gene29410:CDS |
| AGATCAATATCAGGCTTGTA+TGG | 0.422032 | 3.3:-31546953 | None:intergenic |
| TGCTATTCTTCATTTGAAGT+TGG | 0.426339 | 3.3:+31547018 | MS.gene29410:CDS |
| ACTCAATGCCCTTGATTATG+AGG | 0.431327 | 3.3:+31547066 | MS.gene29410:CDS |
| TCCTTCGGCCTGAAGGTGAT+TGG | 0.431595 | 3.3:-31547175 | None:intergenic |
| CCCAAAATCCTTCGGCCTGA+AGG | 0.452825 | 3.3:-31547182 | None:intergenic |
| TTAATATCAATTAGGGGAAT+CGG | 0.452858 | 3.3:-31546680 | None:intergenic |
| ATAAACCAGAAATAGTGAAA+AGG | 0.464547 | 3.3:+31546453 | MS.gene29410:CDS |
| GAAAAGGGGTGAAGAACAAA+AGG | 0.467028 | 3.3:+31546469 | MS.gene29410:CDS |
| GCTAGTTTCGGGTTTGATAC+CGG | 0.478481 | 3.3:+31546730 | MS.gene29410:CDS |
| AACTATTTGGTTGAGAGCGA+TGG | 0.481277 | 3.3:+31546701 | MS.gene29410:CDS |
| CAAAAGGAAGGTGAGGAAAA+GGG | 0.483494 | 3.3:+31546485 | MS.gene29410:CDS |
| TCATGCACATGGCGAGGAAA+CGG | 0.487418 | 3.3:+31546766 | MS.gene29410:CDS |
| AAGGGTTTCATTCAAGACAT+TGG | 0.489962 | 3.3:+31546527 | MS.gene29410:CDS |
| AGACATTGGGGAGAAGATTG+AGG | 0.492962 | 3.3:+31546541 | MS.gene29410:CDS |
| TGGAAGGATCACTATACCTA+TGG | 0.493367 | 3.3:+31546907 | MS.gene29410:CDS |
| GAGAAGATTGAGGAAACAGT+TGG | 0.495120 | 3.3:+31546551 | MS.gene29410:CDS |
| CTCCTTACTCTTCTTGAGAC+GGG | 0.498996 | 3.3:-31547323 | None:intergenic |
| TATCAGGCTTGTATGGAATC+GGG | 0.508761 | 3.3:-31546946 | None:intergenic |
| TGGCTTGGTGATGATAGGAT+TGG | 0.510174 | 3.3:+31547091 | MS.gene29410:CDS |
| TCTCATAAAGAATCCGAATC+CGG | 0.510443 | 3.3:+31546655 | MS.gene29410:CDS |
| GCATGAATTGTACCAGAATC+CGG | 0.513122 | 3.3:-31546749 | None:intergenic |
| TGGGACATGATGAGAGGAAA+AGG | 0.514116 | 3.3:+31547214 | MS.gene29410:CDS |
| TCCAATCACCTTCAGGCCGA+AGG | 0.514304 | 3.3:+31547174 | MS.gene29410:CDS |
| GGCAATTTCATCGCTCCAAA+GGG | 0.514585 | 3.3:-31547277 | None:intergenic |
| AGAAGATTGAGGAAACAGTT+GGG | 0.514812 | 3.3:+31546552 | MS.gene29410:CDS |
| ATGCCCTTGATTATGAGGTA+TGG | 0.514840 | 3.3:+31547071 | MS.gene29410:CDS |
| GAAGGTGATTGGAAGATCAA+TGG | 0.521850 | 3.3:-31547164 | None:intergenic |
| ACTATTTGGTTGAGAGCGAT+GGG | 0.525582 | 3.3:+31546702 | MS.gene29410:CDS |
| CCTCCTTACTCTTCTTGAGA+CGG | 0.529375 | 3.3:-31547324 | None:intergenic |
| TCAATTAGGGGAATCGGTAC+CGG | 0.529894 | 3.3:-31546674 | None:intergenic |
| AGGTATGGCTTGGTGATGAT+AGG | 0.530326 | 3.3:+31547086 | MS.gene29410:CDS |
| GGATTTCTCAATACAGTGAA+GGG | 0.538251 | 3.3:+31546509 | MS.gene29410:CDS |
| AAATTGCCTATTAGCAAAGA+AGG | 0.540155 | 3.3:+31547292 | MS.gene29410:CDS |
| CTTGATTATGAGGTATGGCT+TGG | 0.543545 | 3.3:+31547076 | MS.gene29410:CDS |
| ATGATGAGAGGAAAAGGTAC+AGG | 0.545961 | 3.3:+31547220 | MS.gene29410:CDS |
| TATCATTCCTTATAAGGTGA+AGG | 0.548759 | 3.3:+31546856 | MS.gene29410:CDS |
| CAAGCCATACCTCATAATCA+AGG | 0.553144 | 3.3:-31547075 | None:intergenic |
| AGTGCTGACCCAAAATCCTT+CGG | 0.556973 | 3.3:-31547190 | None:intergenic |
| TACCCGTCTCAAGAAGAGTA+AGG | 0.565557 | 3.3:+31547321 | MS.gene29410:CDS |
| GGTACAGGATACACTATGAA+AGG | 0.566561 | 3.3:+31547235 | MS.gene29410:CDS |
| AGGCAATTTCATCGCTCCAA+AGG | 0.571299 | 3.3:-31547278 | None:intergenic |
| TGGATTTCTCAATACAGTGA+AGG | 0.575361 | 3.3:+31546508 | MS.gene29410:CDS |
| ATAGTGATCCTTCCAATCAC+AGG | 0.589173 | 3.3:-31546899 | None:intergenic |
| CTTGGTGATGATAGGATTGG+AGG | 0.590333 | 3.3:+31547094 | MS.gene29410:CDS |
| ATCTCCGAAACATCTGCAGT+TGG | 0.593488 | 3.3:-31546584 | None:intergenic |
| AGGGGTGAAGAACAAAAGGA+AGG | 0.598618 | 3.3:+31546473 | MS.gene29410:CDS |
| TACAATTCATGCACATGGCG+AGG | 0.611195 | 3.3:+31546760 | MS.gene29410:CDS |
| ACATATGCTGATATTCAACC+GGG | 0.617088 | 3.3:+31546830 | MS.gene29410:CDS |
| GGGTTTCATTCAAGACATTG+GGG | 0.618306 | 3.3:+31546529 | MS.gene29410:CDS |
| TTGATGTTCCTGTGATTGGA+AGG | 0.620198 | 3.3:+31546891 | MS.gene29410:CDS |
| AAGGAAGGTGAGGAAAAGGG+TGG | 0.625777 | 3.3:+31546488 | MS.gene29410:CDS |
| AAGAAGAGTAAGGAGGATGG+TGG | 0.626714 | 3.3:+31547331 | MS.gene29410:CDS |
| AAGCCATACCTCATAATCAA+GGG | 0.628460 | 3.3:-31547074 | None:intergenic |
| TGAAGAACAAAAGGAAGGTG+AGG | 0.629320 | 3.3:+31546478 | MS.gene29410:CDS |
| CTCAAGAAGAGTAAGGAGGA+TGG | 0.634584 | 3.3:+31547328 | MS.gene29410:CDS |
| TGGTGGAGATGATGATGATG+AGG | 0.644185 | 3.3:+31547348 | MS.gene29410:CDS |
| CTTCAAATGAAGAATAGCAA+CGG | 0.645167 | 3.3:-31547014 | None:intergenic |
| GCACTTTGGGACATGATGAG+AGG | 0.649658 | 3.3:+31547208 | MS.gene29410:CDS |
| CTATGTAGAGATGTCGACAT+CGG | 0.653141 | 3.3:+31546430 | None:intergenic |
| AAACCAGAAATAGTGAAAAG+GGG | 0.654731 | 3.3:+31546455 | MS.gene29410:CDS |
| TCTGGTACAATTCATGCACA+TGG | 0.656784 | 3.3:+31546755 | MS.gene29410:CDS |
| CCGTCTCAAGAAGAGTAAGG+AGG | 0.673482 | 3.3:+31547324 | MS.gene29410:CDS |
| ATTTGGTTGAGAGCGATGGG+AGG | 0.702091 | 3.3:+31546705 | MS.gene29410:CDS |
| AAATAGTTAATATCAATTAG+GGG | 0.704056 | 3.3:-31546686 | None:intergenic |
| TTGCCTATTAGCAAAGAAGG+CGG | 0.725605 | 3.3:+31547295 | MS.gene29410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGTTAATATCAATTAG+GGG | - | chr3.3:31546689-31546708 | None:intergenic | 15.0% |
| !! | CAAATAGTTAATATCAATTA+GGG | - | chr3.3:31546690-31546709 | None:intergenic | 15.0% |
| !! | CCAAATAGTTAATATCAATT+AGG | - | chr3.3:31546691-31546710 | None:intergenic | 20.0% |
| !! | CCTAATTGATATTAACTATT+TGG | + | chr3.3:31546688-31546707 | MS.gene29410:CDS | 20.0% |
| ! | ATAAACCAGAAATAGTGAAA+AGG | + | chr3.3:31546453-31546472 | MS.gene29410:CDS | 25.0% |
| ! | CTGCAAAAATTGAAAAATGT+GGG | + | chr3.3:31547134-31547153 | MS.gene29410:CDS | 25.0% |
| ! | TAAACCAGAAATAGTGAAAA+GGG | + | chr3.3:31546454-31546473 | MS.gene29410:CDS | 25.0% |
| ! | TCATCATAAATCAAAGTAAC+AGG | - | chr3.3:31546800-31546819 | None:intergenic | 25.0% |
| ! | TCTGCAAAAATTGAAAAATG+TGG | + | chr3.3:31547133-31547152 | MS.gene29410:CDS | 25.0% |
| ! | TTAATATCAATTAGGGGAAT+CGG | - | chr3.3:31546683-31546702 | None:intergenic | 25.0% |
| !! | ATTTTCTCAAGATCAATATC+AGG | - | chr3.3:31546965-31546984 | None:intergenic | 25.0% |
| !! | GCTTTGTCAAGATTAATTTT+AGG | - | chr3.3:31546617-31546636 | None:intergenic | 25.0% |
| !!! | AACAAGAATGATTTTGACTT+AGG | + | chr3.3:31547043-31547062 | MS.gene29410:CDS | 25.0% |
| AAACCAGAAATAGTGAAAAG+GGG | + | chr3.3:31546455-31546474 | MS.gene29410:CDS | 30.0% | |
| AAATTGCCTATTAGCAAAGA+AGG | + | chr3.3:31547292-31547311 | MS.gene29410:CDS | 30.0% | |
| ACTATACCTATGGAAAAAAC+TGG | + | chr3.3:31546917-31546936 | MS.gene29410:CDS | 30.0% | |
| CTTCAAATGAAGAATAGCAA+CGG | - | chr3.3:31547017-31547036 | None:intergenic | 30.0% | |
| TACATATGCTGATATTCAAC+CGG | + | chr3.3:31546829-31546848 | MS.gene29410:CDS | 30.0% | |
| TATCATTCCTTATAAGGTGA+AGG | + | chr3.3:31546856-31546875 | MS.gene29410:CDS | 30.0% | |
| TTATAAGGAATGATACTTCC+CGG | - | chr3.3:31546851-31546870 | None:intergenic | 30.0% | |
| ! | TGCTATTCTTCATTTGAAGT+TGG | + | chr3.3:31547018-31547037 | MS.gene29410:CDS | 30.0% |
| !!! | ATTTCTCCAGTTTTTTCCAT+AGG | - | chr3.3:31546926-31546945 | None:intergenic | 30.0% |
| AAGCCATACCTCATAATCAA+GGG | - | chr3.3:31547077-31547096 | None:intergenic | 35.0% | |
| AAGGGTTTCATTCAAGACAT+TGG | + | chr3.3:31546527-31546546 | MS.gene29410:CDS | 35.0% | |
| ACATATGCTGATATTCAACC+GGG | + | chr3.3:31546830-31546849 | MS.gene29410:CDS | 35.0% | |
| AGAAGATTGAGGAAACAGTT+GGG | + | chr3.3:31546552-31546571 | MS.gene29410:CDS | 35.0% | |
| AGATCAACCTTCACCTTATA+AGG | - | chr3.3:31546866-31546885 | None:intergenic | 35.0% | |
| AGATCAATATCAGGCTTGTA+TGG | - | chr3.3:31546956-31546975 | None:intergenic | 35.0% | |
| AGGGTTTCATTCAAGACATT+GGG | + | chr3.3:31546528-31546547 | MS.gene29410:CDS | 35.0% | |
| ATATCAGGCTTGTATGGAAT+CGG | - | chr3.3:31546950-31546969 | None:intergenic | 35.0% | |
| GGATTTCTCAATACAGTGAA+GGG | + | chr3.3:31546509-31546528 | MS.gene29410:CDS | 35.0% | |
| TCTCATAAAGAATCCGAATC+CGG | + | chr3.3:31546655-31546674 | MS.gene29410:CDS | 35.0% | |
| TGGATTTCTCAATACAGTGA+AGG | + | chr3.3:31546508-31546527 | MS.gene29410:CDS | 35.0% | |
| ! | ATAGTTGATGTTCCTGTGAT+TGG | + | chr3.3:31546887-31546906 | MS.gene29410:CDS | 35.0% |
| !! | GGGAAGTATCATTCCTTATA+AGG | + | chr3.3:31546850-31546869 | MS.gene29410:CDS | 35.0% |
| AACTATTTGGTTGAGAGCGA+TGG | + | chr3.3:31546701-31546720 | MS.gene29410:CDS | 40.0% | |
| ACAAAAGGAAGGTGAGGAAA+AGG | + | chr3.3:31546484-31546503 | MS.gene29410:CDS | 40.0% | |
| ACTATTTGGTTGAGAGCGAT+GGG | + | chr3.3:31546702-31546721 | MS.gene29410:CDS | 40.0% | |
| ACTCAATGCCCTTGATTATG+AGG | + | chr3.3:31547066-31547085 | MS.gene29410:CDS | 40.0% | |
| ATAGTGATCCTTCCAATCAC+AGG | - | chr3.3:31546902-31546921 | None:intergenic | 40.0% | |
| ATGCCCTTGATTATGAGGTA+TGG | + | chr3.3:31547071-31547090 | MS.gene29410:CDS | 40.0% | |
| ATTGAGGAAACAGTTGGGTT+TGG | + | chr3.3:31546557-31546576 | MS.gene29410:CDS | 40.0% | |
| ATTGATGTTGACACACCCTT+TGG | + | chr3.3:31547262-31547281 | MS.gene29410:CDS | 40.0% | |
| CAAAAGGAAGGTGAGGAAAA+GGG | + | chr3.3:31546485-31546504 | MS.gene29410:CDS | 40.0% | |
| CAAGCCATACCTCATAATCA+AGG | - | chr3.3:31547078-31547097 | None:intergenic | 40.0% | |
| CTTGATTATGAGGTATGGCT+TGG | + | chr3.3:31547076-31547095 | MS.gene29410:CDS | 40.0% | |
| GAAAAGGGGTGAAGAACAAA+AGG | + | chr3.3:31546469-31546488 | MS.gene29410:CDS | 40.0% | |
| GAAACCAACTGCAGATGTTT+CGG | + | chr3.3:31546580-31546599 | MS.gene29410:CDS | 40.0% | |
| GAAGGTGATTGGAAGATCAA+TGG | - | chr3.3:31547167-31547186 | None:intergenic | 40.0% | |
| GAGAAGATTGAGGAAACAGT+TGG | + | chr3.3:31546551-31546570 | MS.gene29410:CDS | 40.0% | |
| GCATGAATTGTACCAGAATC+CGG | - | chr3.3:31546752-31546771 | None:intergenic | 40.0% | |
| GGGTTTCATTCAAGACATTG+GGG | + | chr3.3:31546529-31546548 | MS.gene29410:CDS | 40.0% | |
| GGTACAGGATACACTATGAA+AGG | + | chr3.3:31547235-31547254 | MS.gene29410:CDS | 40.0% | |
| TATCAGGCTTGTATGGAATC+GGG | - | chr3.3:31546949-31546968 | None:intergenic | 40.0% | |
| TCTGGTACAATTCATGCACA+TGG | + | chr3.3:31546755-31546774 | MS.gene29410:CDS | 40.0% | |
| TGAAGAACAAAAGGAAGGTG+AGG | + | chr3.3:31546478-31546497 | MS.gene29410:CDS | 40.0% | |
| TGGAAGGATCACTATACCTA+TGG | + | chr3.3:31546907-31546926 | MS.gene29410:CDS | 40.0% | |
| TTGAGGAAACAGTTGGGTTT+GGG | + | chr3.3:31546558-31546577 | MS.gene29410:CDS | 40.0% | |
| TTGATCTTCCAATCACCTTC+AGG | + | chr3.3:31547167-31547186 | MS.gene29410:CDS | 40.0% | |
| TTGATGTTCCTGTGATTGGA+AGG | + | chr3.3:31546891-31546910 | MS.gene29410:CDS | 40.0% | |
| TTGCCTATTAGCAAAGAAGG+CGG | + | chr3.3:31547295-31547314 | MS.gene29410:CDS | 40.0% | |
| ! | ATGATGAGAGGAAAAGGTAC+AGG | + | chr3.3:31547220-31547239 | MS.gene29410:CDS | 40.0% |
| ! | TCACCCCTTTTCACTATTTC+TGG | - | chr3.3:31546461-31546480 | None:intergenic | 40.0% |
| AAGAAGAGTAAGGAGGATGG+TGG | + | chr3.3:31547331-31547350 | MS.gene29410:CDS | 45.0% | |
| AGACATTGGGGAGAAGATTG+AGG | + | chr3.3:31546541-31546560 | MS.gene29410:CDS | 45.0% | |
| AGGCAATTTCATCGCTCCAA+AGG | - | chr3.3:31547281-31547300 | None:intergenic | 45.0% | |
| AGGGGTGAAGAACAAAAGGA+AGG | + | chr3.3:31546473-31546492 | MS.gene29410:CDS | 45.0% | |
| ATCTCCGAAACATCTGCAGT+TGG | - | chr3.3:31546587-31546606 | None:intergenic | 45.0% | |
| CCTCCTTACTCTTCTTGAGA+CGG | - | chr3.3:31547327-31547346 | None:intergenic | 45.0% | |
| CTCAAGAAGAGTAAGGAGGA+TGG | + | chr3.3:31547328-31547347 | MS.gene29410:CDS | 45.0% | |
| CTCCTTACTCTTCTTGAGAC+GGG | - | chr3.3:31547326-31547345 | None:intergenic | 45.0% | |
| GGCAATTTCATCGCTCCAAA+GGG | - | chr3.3:31547280-31547299 | None:intergenic | 45.0% | |
| GTACCGCCTTCTTTGCTAAT+AGG | - | chr3.3:31547301-31547320 | None:intergenic | 45.0% | |
| TACAATTCATGCACATGGCG+AGG | + | chr3.3:31546760-31546779 | MS.gene29410:CDS | 45.0% | |
| TACCCGTCTCAAGAAGAGTA+AGG | + | chr3.3:31547321-31547340 | MS.gene29410:CDS | 45.0% | |
| TCAATTAGGGGAATCGGTAC+CGG | - | chr3.3:31546677-31546696 | None:intergenic | 45.0% | |
| TGGGACATGATGAGAGGAAA+AGG | + | chr3.3:31547214-31547233 | MS.gene29410:CDS | 45.0% | |
| ! | TGGTGGAGATGATGATGATG+AGG | + | chr3.3:31547348-31547367 | MS.gene29410:CDS | 45.0% |
| !! | AGGATTTTGGGTCAGCACTT+TGG | + | chr3.3:31547194-31547213 | MS.gene29410:CDS | 45.0% |
| !! | AGGTATGGCTTGGTGATGAT+AGG | + | chr3.3:31547086-31547105 | MS.gene29410:CDS | 45.0% |
| !! | AGTGCTGACCCAAAATCCTT+CGG | - | chr3.3:31547193-31547212 | None:intergenic | 45.0% |
| !! | CTTGGTGATGATAGGATTGG+AGG | + | chr3.3:31547094-31547113 | MS.gene29410:CDS | 45.0% |
| !! | GCTAGTTTCGGGTTTGATAC+CGG | + | chr3.3:31546730-31546749 | MS.gene29410:CDS | 45.0% |
| !! | GGATTTTGGGTCAGCACTTT+GGG | + | chr3.3:31547195-31547214 | MS.gene29410:CDS | 45.0% |
| !! | TGGCTTGGTGATGATAGGAT+TGG | + | chr3.3:31547091-31547110 | MS.gene29410:CDS | 45.0% |
| AAGGAAGGTGAGGAAAAGGG+TGG | + | chr3.3:31546488-31546507 | MS.gene29410:CDS | 50.0% | |
| ATTTGGTTGAGAGCGATGGG+AGG | + | chr3.3:31546705-31546724 | MS.gene29410:CDS | 50.0% | |
| CCGTCTCAAGAAGAGTAAGG+AGG | + | chr3.3:31547324-31547343 | MS.gene29410:CDS | 50.0% | |
| TCATGCACATGGCGAGGAAA+CGG | + | chr3.3:31546766-31546785 | MS.gene29410:CDS | 50.0% | |
| TCGGGTTTGATACCGGATTC+TGG | + | chr3.3:31546737-31546756 | MS.gene29410:CDS | 50.0% | |
| ! | ACCTTCAGGCCGAAGGATTT+TGG | + | chr3.3:31547181-31547200 | MS.gene29410:CDS | 50.0% |
| ! | CCTTCAGGCCGAAGGATTTT+GGG | + | chr3.3:31547182-31547201 | MS.gene29410:CDS | 50.0% |
| ! | CGATGGGAGGAAGCTAGTTT+CGG | + | chr3.3:31546718-31546737 | MS.gene29410:CDS | 50.0% |
| ! | GATGGGAGGAAGCTAGTTTC+GGG | + | chr3.3:31546719-31546738 | MS.gene29410:CDS | 50.0% |
| !! | GCACTTTGGGACATGATGAG+AGG | + | chr3.3:31547208-31547227 | MS.gene29410:CDS | 50.0% |
| CCCAAAATCCTTCGGCCTGA+AGG | - | chr3.3:31547185-31547204 | None:intergenic | 55.0% | |
| TCCAATCACCTTCAGGCCGA+AGG | + | chr3.3:31547174-31547193 | MS.gene29410:CDS | 55.0% | |
| TCCTTCGGCCTGAAGGTGAT+TGG | - | chr3.3:31547178-31547197 | None:intergenic | 55.0% | |
| ! | AGGGGAATCGGTACCGGATT+CGG | - | chr3.3:31546671-31546690 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 31546440 | 31547375 | 31546440 | ID=MS.gene29410 |
| chr3.3 | mRNA | 31546440 | 31547375 | 31546440 | ID=MS.gene29410.t1;Parent=MS.gene29410 |
| chr3.3 | exon | 31546440 | 31547375 | 31546440 | ID=MS.gene29410.t1.exon1;Parent=MS.gene29410.t1 |
| chr3.3 | CDS | 31546440 | 31547375 | 31546440 | ID=cds.MS.gene29410.t1;Parent=MS.gene29410.t1 |
| Gene Sequence |
| Protein sequence |
