AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29603

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29603.t1 MTR_5g081900 87.204 211 5 1 1 211 1 189 3.71e-129 361
MS.gene29603.t1 MTR_8g093950 85.714 42 5 1 33 74 39 79 1.64e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29603.t1 AT2G39960 69.048 210 37 2 3 211 10 192 1.27e-99 287
MS.gene29603.t1 AT4G04200 61.321 212 50 3 2 211 9 190 2.99e-85 250

Find 43 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAGAAAATCTGGGTAATT+TGG 0.222649 5.2:+69962824 None:intergenic
TCGTTTGCAGAAACTGATTT+TGG 0.230960 5.2:+69962771 None:intergenic
CGTATACATGTCAGAAAATC+TGG 0.239995 5.2:+69962815 None:intergenic
CCATATCACTTGCTCTTCTT+TGG 0.240424 5.2:+69962504 None:intergenic
TCTTGGTTGAGGGCCTCTTC+TGG 0.250821 5.2:-69962566 MS.gene29603:CDS
CTACCACTGGGTAACACTTT+TGG 0.318937 5.2:+69962734 None:intergenic
ATGTGAAATTGAGCAATATT+AGG 0.331788 5.2:-69965069 MS.gene29603:CDS
ATTCGCTTTCTTCTGTCCTT+TGG 0.333788 5.2:+69965287 None:intergenic
AAAGGTAAGGAAAGGATATA+AGG 0.355380 5.2:+69964949 None:intergenic
ACACACAGTGAATAAATAAA+AGG 0.361489 5.2:+69964931 None:intergenic
AGAAGAAAATCGCGATTCTC+CGG 0.379794 5.2:+69964983 None:intergenic
GCAATATTAGGTTGTTGCTT+GGG 0.414641 5.2:-69965057 MS.gene29603:CDS
TAAGGATGGTGTCTTGGTTG+AGG 0.416353 5.2:-69962577 MS.gene29603:CDS
AAGGATGGTGTCTTGGTTGA+GGG 0.421110 5.2:-69962576 MS.gene29603:CDS
TTTGGATTGTAGGTTATAAC+GGG 0.434899 5.2:-69965109 MS.gene29603:intron
TTCCTTTACCAGTACCGGTT+TGG 0.452853 5.2:-69962856 MS.gene29603:CDS
AGCAATATTAGGTTGTTGCT+TGG 0.460593 5.2:-69965058 MS.gene29603:CDS
CAGGGTTCCTTTACCAGTAC+CGG 0.482927 5.2:-69962861 MS.gene29603:CDS
TACCAAACCGGTACTGGTAA+AGG 0.483907 5.2:+69962854 None:intergenic
GTTCACTAAGGATGGTGTCT+TGG 0.485813 5.2:-69962583 MS.gene29603:CDS
CGAGAATGTGCTTGATTGAA+TGG 0.489697 5.2:+69965253 None:intergenic
GGAAACTACCAAACCGGTAC+TGG 0.493140 5.2:+69962848 None:intergenic
GGTTGAGGGCCTCTTCTGGA+AGG 0.505626 5.2:-69962562 MS.gene29603:CDS
TTGTAGGTTATAACGGGTCG+TGG 0.511975 5.2:-69965103 MS.gene29603:intron
GATTCCAGGTTCACTAAGGA+TGG 0.517156 5.2:-69962591 MS.gene29603:intron
TTTGGATTCCAGGTTCACTA+AGG 0.518138 5.2:-69962595 MS.gene29603:intron
GAAGAAAATCGCGATTCTCC+GGG 0.518343 5.2:+69964984 None:intergenic
TCTCGATGAGTCTGCTTCTG+AGG 0.518489 5.2:-69965235 MS.gene29603:intron
TTTGGAGGAAACTACCAAAC+CGG 0.521957 5.2:+69962842 None:intergenic
AATAAATAAAAGGTAAGGAA+AGG 0.544623 5.2:+69964941 None:intergenic
AGAAAATCTGGGTAATTTGG+AGG 0.545278 5.2:+69962827 None:intergenic
CTTCAACATCCTTCCAGAAG+AGG 0.549952 5.2:+69962553 None:intergenic
CAGTGAATAAATAAAAGGTA+AGG 0.583044 5.2:+69964936 None:intergenic
GCAGCTGATCATATACACTA+AGG 0.584453 5.2:-69964153 MS.gene29603:CDS
AACGGGTCGTGGGTATGTTG+AGG 0.596614 5.2:-69965092 MS.gene29603:CDS
GTATACATGTCAGAAAATCT+GGG 0.601017 5.2:+69962816 None:intergenic
TCACAGAAACTTACAGTCAG+AGG 0.616719 5.2:+69964104 None:intergenic
CAGAGGATAAGTAAACAGAA+TGG 0.624465 5.2:+69964121 None:intergenic
ATTCGAAACATGGCAACCAA+AGG 0.628041 5.2:-69965303 None:intergenic
TGTAGGTTATAACGGGTCGT+GGG 0.632463 5.2:-69965102 MS.gene29603:intron
TACGTATGTAGTCTTCAACT+TGG 0.636467 5.2:-69964180 MS.gene29603:CDS
CTACATACGTACGAGAGTCA+AGG 0.645912 5.2:+69964192 None:intergenic
TTACCAAAAGTGTTACCCAG+TGG 0.756276 5.2:-69962737 MS.gene29603:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGTAAATATCTAAATTA+AGG - chr5.2:69963332-69963351 MS.gene29603:intron 10.0%
!!! ATTTAACATTTTATTATGTA+TGG - chr5.2:69964172-69964191 MS.gene29603:CDS 10.0%
!!! TTTAACATTTTATTATGTAT+GGG - chr5.2:69964173-69964192 MS.gene29603:CDS 10.0%
!!! TTTATATCTTATTTTTTACA+GGG - chr5.2:69964924-69964943 MS.gene29603:intron 10.0%
!!! TTTTATATCTTATTTTTTAC+AGG - chr5.2:69964923-69964942 MS.gene29603:intron 10.0%
!! ATAAAGAACTTTAATAGTTT+AGG + chr5.2:69964590-69964609 None:intergenic 15.0%
!! CATTTATCTAAAAATGATTT+AGG - chr5.2:69964793-69964812 MS.gene29603:intron 15.0%
!! TAAACTATTAAAGTTCTTTA+TGG - chr5.2:69964589-69964608 MS.gene29603:intron 15.0%
!! AATAAATAAAAGGTAAGGAA+AGG + chr5.2:69962865-69962884 None:intergenic 20.0%
!! ATATGAAAATGAAAGAAAGT+TGG + chr5.2:69964553-69964572 None:intergenic 20.0%
!! ATATGATGATTTATGTGAAA+AGG - chr5.2:69963529-69963548 MS.gene29603:intron 20.0%
!! CAACAAGATCAAAAAAATTA+GGG + chr5.2:69962607-69962626 None:intergenic 20.0%
!! TATGATGATTTATGTGAAAA+GGG - chr5.2:69963530-69963549 MS.gene29603:intron 20.0%
!! TCAACAAGATCAAAAAAATT+AGG + chr5.2:69962608-69962627 None:intergenic 20.0%
!! TGTGTTGAAAATGAAATATT+TGG - chr5.2:69963432-69963451 MS.gene29603:intron 20.0%
!! TGTTGTGAAATAACAATTAT+AGG - chr5.2:69963205-69963224 MS.gene29603:intron 20.0%
!! TTTCAATAGTGATTTAAAGA+GGG - chr5.2:69964652-69964671 MS.gene29603:intron 20.0%
!!! GAGTTTTTTGTTTGTTAATT+GGG - chr5.2:69962664-69962683 MS.gene29603:intron 20.0%
!!! TAAATGTTATTTCTATGTGT+TGG + chr5.2:69963811-69963830 None:intergenic 20.0%
!!! TAGTTGTTTTAATTGAAAGT+TGG - chr5.2:69963488-69963507 MS.gene29603:intron 20.0%
!!! TATGTGAACGATTTTATAAA+GGG + chr5.2:69965113-69965132 None:intergenic 20.0%
!!! TGAGTTTTTTGTTTGTTAAT+TGG - chr5.2:69962663-69962682 MS.gene29603:intron 20.0%
!!! TGCTTTTGATTTTATTCTTT+CGG - chr5.2:69964849-69964868 MS.gene29603:intron 20.0%
!!! TTTTCAATAGTGATTTAAAG+AGG - chr5.2:69964651-69964670 MS.gene29603:intron 20.0%
! AACATCCAAATTAAGATTCA+AGG + chr5.2:69964624-69964643 None:intergenic 25.0%
! ACACACAGTGAATAAATAAA+AGG + chr5.2:69962875-69962894 None:intergenic 25.0%
! AGTTGGAATAACATAGATAA+AGG + chr5.2:69964536-69964555 None:intergenic 25.0%
! ATAAGATATAAAAGCCAAGT+TGG + chr5.2:69964916-69964935 None:intergenic 25.0%
! ATGTGAAATTGAGCAATATT+AGG - chr5.2:69962734-69962753 MS.gene29603:intron 25.0%
! ATTTATGTGAAAAGGGATAT+GGG - chr5.2:69963537-69963556 MS.gene29603:intron 25.0%
! CAAACTATTTATGCAGATTA+TGG - chr5.2:69964471-69964490 MS.gene29603:intron 25.0%
! CAGTGAATAAATAAAAGGTA+AGG + chr5.2:69962870-69962889 None:intergenic 25.0%
! CATAATCTGCATAAATAGTT+TGG + chr5.2:69964473-69964492 None:intergenic 25.0%
! CCAGTACTAATTTAAGAAAA+TGG - chr5.2:69963055-69963074 MS.gene29603:intron 25.0%
! TTCAATACTCACTTTCTTAT+TGG - chr5.2:69964225-69964244 MS.gene29603:CDS 25.0%
!! CCATTTTCTTAAATTAGTAC+TGG + chr5.2:69963058-69963077 None:intergenic 25.0%
!! CTATGTGAACGATTTTATAA+AGG + chr5.2:69965114-69965133 None:intergenic 25.0%
!! TGTTAATTGGGATTGAATTT+TGG - chr5.2:69962676-69962695 MS.gene29603:intron 25.0%
!! TTCAATTAGCAAGTTTCTTT+TGG - chr5.2:69963921-69963940 MS.gene29603:intron 25.0%
!! TTTTGGATTGTAGGTTATAA+CGG - chr5.2:69962693-69962712 MS.gene29603:intron 25.0%
!!! AAGTTTGTTAAAATTCCACT+AGG + chr5.2:69963249-69963268 None:intergenic 25.0%
!!! AATGTCTGGTTAGTTTATTT+AGG - chr5.2:69963968-69963987 MS.gene29603:intron 25.0%
!!! ATACTGTTTTTGTTATGGTT+TGG - chr5.2:69963295-69963314 MS.gene29603:intron 25.0%
!!! TGCTAATACTGTTTTTGTTA+TGG - chr5.2:69963290-69963309 MS.gene29603:intron 25.0%
!!! TTAATACTGATTCATATGTC+CGG + chr5.2:69965140-69965159 None:intergenic 25.0%
!!! TTGTTTTAATTGAAAGTTGG+AGG - chr5.2:69963491-69963510 MS.gene29603:intron 25.0%
!!! TTTTTTGTGTTGTCAAATAG+CGG - chr5.2:69962962-69962981 MS.gene29603:intron 25.0%
AAAAAATTAGGGTTTAGCGA+AGG + chr5.2:69962596-69962615 None:intergenic 30.0%
AAAGGTAAGGAAAGGATATA+AGG + chr5.2:69962857-69962876 None:intergenic 30.0%
AGACAAATAATGCTAATGTC+TGG - chr5.2:69963954-69963973 MS.gene29603:intron 30.0%
AGTTGCCTTGAATCTTAATT+TGG - chr5.2:69964616-69964635 MS.gene29603:intron 30.0%
CTAAAGCATGTTCCTTTAAA+TGG - chr5.2:69963728-69963747 MS.gene29603:intron 30.0%
CTTATTGGATGAAATCAATG+TGG - chr5.2:69964240-69964259 MS.gene29603:intron 30.0%
GATTTATGTGAAAAGGGATA+TGG - chr5.2:69963536-69963555 MS.gene29603:intron 30.0%
GGCAAATAAATGAATGCTAT+GGG - chr5.2:69964194-69964213 MS.gene29603:CDS 30.0%
GTATACATGTCAGAAAATCT+GGG + chr5.2:69964990-69965009 None:intergenic 30.0%
TTTGGATTGTAGGTTATAAC+GGG - chr5.2:69962694-69962713 MS.gene29603:intron 30.0%
! AATTGAAAGTTGGAGGTTTT+TGG - chr5.2:69963498-69963517 MS.gene29603:intron 30.0%
! ACGATTTTATAAAGGGATGA+AGG + chr5.2:69965106-69965125 None:intergenic 30.0%
! ATTCCAAATTTTCTCTCACT+AGG + chr5.2:69962930-69962949 None:intergenic 30.0%
! CGATTTTATAAAGGGATGAA+GGG + chr5.2:69965105-69965124 None:intergenic 30.0%
! CTTCTATTTTCTGTGATTTG+TGG - chr5.2:69963266-69963285 MS.gene29603:intron 30.0%
!! GTTTTTGTTATGGTTTGGAT+GGG - chr5.2:69963300-69963319 MS.gene29603:intron 30.0%
!! TGTTTTTGTTATGGTTTGGA+TGG - chr5.2:69963299-69963318 MS.gene29603:intron 30.0%
!! TTATTTCTATGTGTTGGAAG+TGG + chr5.2:69963805-69963824 None:intergenic 30.0%
!! TTTTTGTTATGGTTTGGATG+GGG - chr5.2:69963301-69963320 MS.gene29603:intron 30.0%
!!! GCATCAATCTGTTTTTTGTT+TGG - chr5.2:69965190-69965209 MS.gene29603:intron 30.0%
AAAAAAGAGTAGCAATCCTC+TGG - chr5.2:69964353-69964372 MS.gene29603:intron 35.0%
AAAAAGAGTAGCAATCCTCT+GGG - chr5.2:69964354-69964373 MS.gene29603:intron 35.0%
AAAATCGTTCACATAGACAC+CGG - chr5.2:69965118-69965137 MS.gene29603:intron 35.0%
ACCAGATTATATTTACCCAG+AGG + chr5.2:69964372-69964391 None:intergenic 35.0%
AGAAAATCTGGGTAATTTGG+AGG + chr5.2:69964979-69964998 None:intergenic 35.0%
ATCATCCTGCTGCAAATAAA+AGG + chr5.2:69964419-69964438 None:intergenic 35.0%
ATGCCTAGTGAGAGAAAATT+TGG - chr5.2:69962924-69962943 MS.gene29603:intron 35.0%
ATGTAATGATGCAAACTGTG+TGG - chr5.2:69964705-69964724 MS.gene29603:intron 35.0%
ATTGAATCAGTGCACAAAAC+AGG + chr5.2:69963757-69963776 None:intergenic 35.0%
CAAATAGCTGAAACTAATCG+TGG - chr5.2:69964111-69964130 MS.gene29603:intron 35.0%
CAGAGGATAAGTAAACAGAA+TGG + chr5.2:69963685-69963704 None:intergenic 35.0%
CGTATACATGTCAGAAAATC+TGG + chr5.2:69964991-69965010 None:intergenic 35.0%
CTAACATCCACTCTCTTATT+GGG + chr5.2:69964322-69964341 None:intergenic 35.0%
GAGTGTGTGTTCAAATTGAA+AGG - chr5.2:69963389-69963408 MS.gene29603:intron 35.0%
GGGCAAATAAATGAATGCTA+TGG - chr5.2:69964193-69964212 MS.gene29603:CDS 35.0%
GTCAGAAAATCTGGGTAATT+TGG + chr5.2:69964982-69965001 None:intergenic 35.0%
TACGTATGTAGTCTTCAACT+TGG - chr5.2:69963623-69963642 MS.gene29603:intron 35.0%
TCCTCTGGGTAAATATAATC+TGG - chr5.2:69964368-69964387 MS.gene29603:intron 35.0%
TCTAACATCCACTCTCTTAT+TGG + chr5.2:69964323-69964342 None:intergenic 35.0%
TCTCTCTAACAGACACAAAA+TGG + chr5.2:69963866-69963885 None:intergenic 35.0%
TTGAATCAGTGCACAAAACA+GGG + chr5.2:69963756-69963775 None:intergenic 35.0%
! ACACTTTTGGTAAGATGTAC+TGG + chr5.2:69965059-69965078 None:intergenic 35.0%
! ACATCCATGGGTTAAAAACA+TGG - chr5.2:69964444-69964463 MS.gene29603:intron 35.0%
! AGCAATATTAGGTTGTTGCT+TGG - chr5.2:69962745-69962764 MS.gene29603:CDS 35.0%
! AGGATGATTTTTCACATCCA+TGG - chr5.2:69964431-69964450 MS.gene29603:intron 35.0%
! ATTTTGTGTCTGTTAGAGAG+AGG - chr5.2:69963865-69963884 MS.gene29603:intron 35.0%
! CTCATGTTTTGTCTTTGTAG+TGG - chr5.2:69964744-69964763 MS.gene29603:intron 35.0%
! GAGAACTCTTGTTTGTATGT+AGG - chr5.2:69963367-69963386 MS.gene29603:intron 35.0%
! GCAATATTAGGTTGTTGCTT+GGG - chr5.2:69962746-69962765 MS.gene29603:CDS 35.0%
! GGATGATTTTTCACATCCAT+GGG - chr5.2:69964432-69964451 MS.gene29603:intron 35.0%
! GGGATTGAATTTTGGATTGT+AGG - chr5.2:69962684-69962703 MS.gene29603:intron 35.0%
! GTTTTACAAGAAGAAGTTCC+CGG - chr5.2:69962801-69962820 MS.gene29603:CDS 35.0%
! TTTAGGACTGTGCTATAGTA+AGG - chr5.2:69963985-69964004 MS.gene29603:intron 35.0%
! TTTTGTGTCTGTTAGAGAGA+GGG - chr5.2:69963866-69963885 MS.gene29603:intron 35.0%
!! ACGGTTTTGATCAGATTTGT+CGG - chr5.2:69963125-69963144 MS.gene29603:intron 35.0%
!! GTGTTGGAAGTGGATTAAAA+CGG + chr5.2:69963795-69963814 None:intergenic 35.0%
!! TACATCCTTTTATTTGCAGC+AGG - chr5.2:69964411-69964430 MS.gene29603:intron 35.0%
!! TCGTTTGCAGAAACTGATTT+TGG + chr5.2:69965035-69965054 None:intergenic 35.0%
!! TTTAGGTTGAGAATTTGACC+AGG - chr5.2:69964500-69964519 MS.gene29603:intron 35.0%
!!! CTGTTTTTTGTTTGGATTCC+AGG - chr5.2:69965198-69965217 MS.gene29603:intron 35.0%
!!! TAATGCGTGCACTGATTTTT+TGG - chr5.2:69965157-69965176 MS.gene29603:intron 35.0%
ACAAACCACTTACACAGACA+CGG - chr5.2:69963004-69963023 MS.gene29603:intron 40.0%
ACTATATCACTGTAGCCTAG+TGG - chr5.2:69963231-69963250 MS.gene29603:intron 40.0%
AGAAGAAAATCGCGATTCTC+CGG + chr5.2:69962823-69962842 None:intergenic 40.0%
ATCAAAACCGTAACTGACAC+TGG + chr5.2:69963116-69963135 None:intergenic 40.0%
ATTCGCTTTCTTCTGTCCTT+TGG + chr5.2:69962519-69962538 None:intergenic 40.0%
CAATGTGAGTCCTACACTTT+GGG + chr5.2:69964293-69964312 None:intergenic 40.0%
CATCGCACTCTACTTCAAAA+AGG + chr5.2:69963465-69963484 None:intergenic 40.0%
CGAGAATGTGCTTGATTGAA+TGG + chr5.2:69962553-69962572 None:intergenic 40.0%
CGCGTATTGTGAAACAATAG+TGG + chr5.2:69963164-69963183 None:intergenic 40.0%
GATAAAGGCAAGTACTATCC+TGG + chr5.2:69964521-69964540 None:intergenic 40.0%
GATTACACCCAATAAGAGAG+TGG - chr5.2:69964312-69964331 MS.gene29603:intron 40.0%
GCAGATTATGGCATGTCTTT+AGG - chr5.2:69964483-69964502 MS.gene29603:intron 40.0%
GCAGCTGATCATATACACTA+AGG - chr5.2:69963650-69963669 MS.gene29603:intron 40.0%
GGAAAAAGAGAACTACCACT+GGG + chr5.2:69965084-69965103 None:intergenic 40.0%
TCAATGTGAGTCCTACACTT+TGG + chr5.2:69964294-69964313 None:intergenic 40.0%
TCACAGAAACTTACAGTCAG+AGG + chr5.2:69963702-69963721 None:intergenic 40.0%
TGAATCAGTGCACAAAACAG+GGG + chr5.2:69963755-69963774 None:intergenic 40.0%
TGGGTGCTTCATGTTTATCA+TGG + chr5.2:69964065-69964084 None:intergenic 40.0%
TGGGTTTCACATAAAGTGGT+AGG + chr5.2:69964268-69964287 None:intergenic 40.0%
TTTGGAGGAAACTACCAAAC+CGG + chr5.2:69964964-69964983 None:intergenic 40.0%
TTTGGATTCCAGGTTCACTA+AGG - chr5.2:69965208-69965227 MS.gene29603:intron 40.0%
! ATGAAGCACCCATGTTAAAC+AGG - chr5.2:69964073-69964092 MS.gene29603:intron 40.0%
! GAGTATTGTGTGTTCCAACT+TGG - chr5.2:69964899-69964918 MS.gene29603:intron 40.0%
! GGAATGGGTTTCACATAAAG+TGG + chr5.2:69964272-69964291 None:intergenic 40.0%
! TGAAGCACCCATGTTAAACA+GGG - chr5.2:69964074-69964093 MS.gene29603:intron 40.0%
! TTTTGGATCTGCGCTTTCTA+TGG + chr5.2:69965018-69965037 None:intergenic 40.0%
!! GCAAGTTTCTTTTGGTCTTC+TGG - chr5.2:69963929-69963948 MS.gene29603:intron 40.0%
!! GTGTTGTCAAATAGCGGATA+GGG - chr5.2:69962968-69962987 MS.gene29603:intron 40.0%
!! GTTGCCATGTTTTTAACCCA+TGG + chr5.2:69964451-69964470 None:intergenic 40.0%
!! TGTGTTGTCAAATAGCGGAT+AGG - chr5.2:69962967-69962986 MS.gene29603:intron 40.0%
!! TTACCAAAAGTGTTACCCAG+TGG - chr5.2:69965066-69965085 MS.gene29603:CDS 40.0%
!!! TTTTGAAGTAGAGTGCGATG+TGG - chr5.2:69963465-69963484 MS.gene29603:intron 40.0%
AAGGATGGTGTCTTGGTTGA+GGG - chr5.2:69965227-69965246 MS.gene29603:intron 45.0%
CAAAACAGGGGGCCATTTAA+AGG + chr5.2:69963743-69963762 None:intergenic 45.0%
CGTGTAGCCCTGTTTAACAT+GGG + chr5.2:69964084-69964103 None:intergenic 45.0%
CTACATACGTACGAGAGTCA+AGG + chr5.2:69963614-69963633 None:intergenic 45.0%
CTTCAACATCCTTCCAGAAG+AGG + chr5.2:69965253-69965272 None:intergenic 45.0%
GAAACCCATTCCCAAAGTGT+AGG - chr5.2:69964280-69964299 MS.gene29603:intron 45.0%
GAAGAAAATCGCGATTCTCC+GGG + chr5.2:69962822-69962841 None:intergenic 45.0%
GAATCAGTGCACAAAACAGG+GGG + chr5.2:69963754-69963773 None:intergenic 45.0%
GATTCCAGGTTCACTAAGGA+TGG - chr5.2:69965212-69965231 MS.gene29603:intron 45.0%
GGGAAAAAGAGAACTACCAC+TGG + chr5.2:69965085-69965104 None:intergenic 45.0%
GTTCACTAAGGATGGTGTCT+TGG - chr5.2:69965220-69965239 MS.gene29603:intron 45.0%
TAAGGATGGTGTCTTGGTTG+AGG - chr5.2:69965226-69965245 MS.gene29603:intron 45.0%
TCGTGTAGCCCTGTTTAACA+TGG + chr5.2:69964085-69964104 None:intergenic 45.0%
TGTTGTGCCAGTGTCAGTTA+CGG - chr5.2:69963106-69963125 MS.gene29603:intron 45.0%
TTGACATGTAGTGTCGTCTC+TGG + chr5.2:69963033-69963052 None:intergenic 45.0%
TTTGTCTTTGTAGTGGCTGC+TGG - chr5.2:69964751-69964770 MS.gene29603:intron 45.0%
! CTACCACTGGGTAACACTTT+TGG + chr5.2:69965072-69965091 None:intergenic 45.0%
! GAGTCCTACACTTTGGGAAT+GGG + chr5.2:69964287-69964306 None:intergenic 45.0%
! TGAGTCCTACACTTTGGGAA+TGG + chr5.2:69964288-69964307 None:intergenic 45.0%
!! TACCAAACCGGTACTGGTAA+AGG + chr5.2:69964952-69964971 None:intergenic 45.0%
!! TGTAGGTTATAACGGGTCGT+GGG - chr5.2:69962701-69962720 MS.gene29603:intron 45.0%
!! TTCCTTTACCAGTACCGGTT+TGG - chr5.2:69964947-69964966 MS.gene29603:CDS 45.0%
!! TTGTAGGTTATAACGGGTCG+TGG - chr5.2:69962700-69962719 MS.gene29603:intron 45.0%
CAGGGTTCCTTTACCAGTAC+CGG - chr5.2:69964942-69964961 MS.gene29603:CDS 50.0%
GACACCATCCTTAGTGAACC+TGG + chr5.2:69965219-69965238 None:intergenic 50.0%
GGAAACTACCAAACCGGTAC+TGG + chr5.2:69964958-69964977 None:intergenic 50.0%
TCTCGATGAGTCTGCTTCTG+AGG - chr5.2:69962568-69962587 MS.gene29603:CDS 50.0%
AACGGGTCGTGGGTATGTTG+AGG - chr5.2:69962711-69962730 MS.gene29603:intron 55.0%
GGTGTCCGTGTCTGTGTAAG+TGG + chr5.2:69963012-69963031 None:intergenic 55.0%
TCTTGGTTGAGGGCCTCTTC+TGG - chr5.2:69965237-69965256 MS.gene29603:CDS 55.0%
GGTTGAGGGCCTCTTCTGGA+AGG - chr5.2:69965241-69965260 MS.gene29603:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 69962509 69965316 69962509 ID=MS.gene29603
chr5.2 mRNA 69962509 69965316 69962509 ID=MS.gene29603.t1;Parent=MS.gene29603
chr5.2 exon 69965236 69965316 69965236 ID=MS.gene29603.t1.exon1;Parent=MS.gene29603.t1
chr5.2 CDS 69965236 69965316 69965236 ID=cds.MS.gene29603.t1;Parent=MS.gene29603.t1
chr5.2 exon 69964935 69965119 69964935 ID=MS.gene29603.t1.exon2;Parent=MS.gene29603.t1
chr5.2 CDS 69964935 69965119 69964935 ID=cds.MS.gene29603.t1;Parent=MS.gene29603.t1
chr5.2 exon 69964118 69964247 69964118 ID=MS.gene29603.t1.exon3;Parent=MS.gene29603.t1
chr5.2 CDS 69964118 69964247 69964118 ID=cds.MS.gene29603.t1;Parent=MS.gene29603.t1
chr5.2 exon 69962738 69962880 69962738 ID=MS.gene29603.t1.exon4;Parent=MS.gene29603.t1
chr5.2 CDS 69962738 69962880 69962738 ID=cds.MS.gene29603.t1;Parent=MS.gene29603.t1
chr5.2 exon 69962509 69962605 69962509 ID=MS.gene29603.t1.exon5;Parent=MS.gene29603.t1
chr5.2 CDS 69962509 69962605 69962509 ID=cds.MS.gene29603.t1;Parent=MS.gene29603.t1
Gene Sequence

>MS.gene29603

ATGGCAACCAAAGGACAGAAGAAAGCGAATCTGTTAGATCACCATTCAATCAAGCACATTCTCGATGAGTCTGCTTCTGAGGTTCCTTCGCTAAACCCTAATTTTTTTGATCTTGTTGATTTTTGATGAATTTTGTTGTGTTTTTGTGTTTAATTGAGTTTTTTGTTTGTTAATTGGGATTGAATTTTGGATTGTAGGTTATAACGGGTCGTGGGTATGTTGAGGATGTGAAATTGAGCAATATTAGGTTGTTGCTTGGGTCTGTCATCATCGTCATTGCTCTTTTTGCTCAGTTTTACAAGAAGAAGTTCCCGGAGAATCGCGATTTTCTTCTTGCTTGCATTGCCTTATATCCTTTCCTTACCTTTTATTTATTCACTGTGTGTACATGTGTGTGTGTTTAATTTATAACAAAATGCCTAGTGAGAGAAAATTTGGAATTTTTTTTTTTTTTTTTTTGTGTTGTCAAATAGCGGATAGGGTAGCTGTGTTTTAACAAACCACTTACACAGACACGGACACCAGAGACGACACTACATGTCAATACCAGTACTAATTTAAGAAAATGGCATAATTGAATGAGATCACTTGTGTCGATGTTGTGCCAGTGTCAGTTACGGTTTTGATCAGATTTGTCGGTGTACAGAGCAAACCACTATTGTTTCACAATACGCGATTTAGAAATAAATAAAATAGTGTTGTGAAATAACAATTATAGGAGAACTATATCACTGTAGCCTAGTGGAATTTTAACAAACTTCTATTTTCTGTGATTTGTGGTTGCTAATACTGTTTTTGTTATGGTTTGGATGGGGATAATTGTATAAGTAAATATCTAAATTAAGGATTTTTCAAAATGAGAACTCTTGTTTGTATGTAGGAGTGTGTGTTCAAATTGAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTTGAAAATGAAATATTTGGAATTAAACCTTTTTGAAGTAGAGTGCGATGTGGTAGTTGTTTTAATTGAAAGTTGGAGGTTTTTGGCTAAATGAATATGATGATTTATGTGAAAAGGGATATGGGATTGTTTGTGTTTGTAAGTCTACTCATTCTTCTGCTTCATTGTTGTTTGATCCTTGACTCTCGTACGTATGTAGTCTTCAACTTGGTGTTGCAGCTGATCATATACACTAAGGAGAAGAATGCCATTCTGTTTACTTATCCTCTGACTGTAAGTTTCTGTGAACTTAGCTAAAGCATGTTCCTTTAAATGGCCCCCTGTTTTGTGCACTGATTCAATTGTTGTTTAATCTGACCGTTTTAATCCACTTCCAACACATAGAAATAACATTTAAAAATTGTCATATTTCTATAATCTATTCTGTGCCATTTTGTGTCTGTTAGAGAGAGGGATTGAGACAAGAGTATATCTTTTTCTTACTATTTCAATTAGCAAGTTTCTTTTGGTCTTCTGGAGAGACAAATAATGCTAATGTCTGGTTAGTTTATTTAGGACTGTGCTATAGTAAGGCATAAAGATACATACAAATACATTTATTTGAAGATGACTGTTTCAGCTCAATAACCATGATAAACATGAAGCACCCATGTTAAACAGGGCTACACGAAGTTGACAAATAGCTGAAACTAATCGTGGTTTGATAAGCGAGTAATATTTATTTGATATTTAGTTGCATTTAACATTTTATTATGTATGGGCAAATAAATGAATGCTATGGGACACTCTTTTCAATACTCACTTTCTTATTGGATGAAATCAATGTGGATCCTACCACTTTATGTGAAACCCATTCCCAAAGTGTAGGACTCACATTGATTACACCCAATAAGAGAGTGGATGTTAGAGTGAGTGTTGAAAAAAGAGTAGCAATCCTCTGGGTAAATATAATCTGGTATCACTTTATCATGTTCTCTACATCCTTTTATTTGCAGCAGGATGATTTTTCACATCCATGGGTTAAAAACATGGCAACCAAACTATTTATGCAGATTATGGCATGTCTTTAGGTTGAGAATTTGACCAGGATAGTACTTGCCTTTATCTATGTTATTCCAACTTTCTTTCATTTTCATATGAAATTTGAGTTGACCTAAACTATTAAAGTTCTTTATGGTTTTAGTTGCCTTGAATCTTAATTTGGATGTTGCTTCATTTTTCAATAGTGATTTAAAGAGGGTAAGTTATGACATATATCGATTAGTGTCACATGTAATGATGCAAACTGTGTGGTGTAGATTGTAGATATCTCATGTTTTGTCTTTGTAGTGGCTGCTGGTGATAGAATATATTATTTTCATTTATCTAAAAATGATTTAGGTTTGTCTTTGAACTGTGTCAACAAATCAAGTAATGCTTTTGATTTTATTCTTTCGGCAGAAGTTTAAGACATACATTAATTATGAGTATTGTGTGTTCCAACTTGGCTTTTATATCTTATTTTTTACAGGGTTCCTTTACCAGTACCGGTTTGGTAGTTTCCTCCAAATTACCCAGATTTTCTGACATGTATACGCTTACCATAGAAAGCGCAGATCCAAAATCAGTTTCTGCAAACGAACCAGTACATCTTACCAAAAGTGTTACCCAGTGGTAGTTCTCTTTTTCCCTTCATCCCTTTATAAAATCGTTCACATAGACACCGGACATATGAATCAGTATTAATGCGTGCACTGATTTTTTGGTAATCAAAATGCATCAATCTGTTTTTTGTTTGGATTCCAGGTTCACTAAGGATGGTGTCTTGGTTGAGGGCCTCTTCTGGAAGGATGTTGAAGCTCTAATCGCTCAATATACGAAAGAACCAAAGAAGAGCAAGTGA
Protein sequence

>MS.gene29603.t1

MATKGQKKANLLDHHSIKHILDESASEVITGRGYVEDVKLSNIRLLLGSVIIVIALFAQFYKKKFPENRDFLLACIALYPFLTFYLFTVLLILLLHCCLILDSRTYVVFNLVLQLIIYTKEKNAILFTYPLTGSFTSTGLVVSSKLPRFSDMYTLTIESADPKSVSANEPVHLTKSVTQWFTKDGVLVEGLFWKDVEALIAQYTKEPKKSK